Query psy9578
Match_columns 122
No_of_seqs 141 out of 855
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:13:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_U 50S ribosomal protein L 100.0 1.3E-63 4.6E-68 363.4 14.4 118 1-118 1-118 (118)
2 2zjr_N 50S ribosomal protein L 100.0 9.5E-63 3.3E-67 358.9 12.7 116 1-116 1-116 (118)
3 3r8s_Q 50S ribosomal protein L 100.0 4.6E-62 1.6E-66 354.9 14.3 117 2-118 1-117 (117)
4 3bbo_S Ribosomal protein L20; 100.0 1.2E-61 4.2E-66 353.5 10.6 116 1-116 1-118 (119)
5 2ghj_A 50S ribosomal protein L 100.0 3.4E-61 1.2E-65 350.7 12.2 116 2-118 1-116 (118)
6 2ftc_L MRPL20 protein; mitocho 100.0 4.2E-58 1.4E-62 334.5 14.2 112 5-116 5-116 (118)
7 4aik_A Transcriptional regulat 66.3 28 0.00097 23.8 7.2 56 58-113 13-70 (151)
8 2cob_A LCOR protein; MLR2, KIA 60.2 6.8 0.00023 25.6 2.8 28 65-92 33-60 (70)
9 3e7l_A Transcriptional regulat 59.0 9.3 0.00032 23.0 3.1 26 65-90 35-60 (63)
10 4b8x_A SCO5413, possible MARR- 57.0 41 0.0014 22.7 6.6 56 58-113 17-75 (147)
11 1g2h_A Transcriptional regulat 51.8 13 0.00043 22.4 2.9 25 65-89 36-60 (61)
12 1umq_A Photosynthetic apparatu 38.8 24 0.00083 22.9 2.9 24 65-88 57-80 (81)
13 3vmx_A Voltage-gated hydrogen 36.9 19 0.00066 21.9 1.9 13 62-74 34-46 (48)
14 1eto_A FIS, factor for inversi 36.4 31 0.0011 22.9 3.2 25 65-89 74-98 (98)
15 3a2a_A Voltage-gated hydrogen 31.4 23 0.0008 22.3 1.7 14 61-74 40-53 (58)
16 1ntc_A Protein (nitrogen regul 30.0 18 0.00062 23.3 1.1 24 65-88 67-90 (91)
17 2ck3_I ATP synthase subunit ep 29.9 20 0.00067 21.9 1.1 14 70-83 5-18 (50)
18 2k9i_A Plasmid PRN1, complete 29.9 50 0.0017 18.6 3.0 22 62-83 21-42 (55)
19 2cpg_A REPA protein, transcrip 29.4 54 0.0018 17.8 3.0 23 62-84 14-36 (45)
20 4i1u_A Dephospho-COA kinase; s 29.2 36 0.0012 25.5 2.8 39 72-110 50-92 (210)
21 3oee_I ATP synthase subunit ep 28.9 22 0.00074 22.5 1.2 13 70-82 4-16 (61)
22 3g3z_A NMB1585, transcriptiona 27.9 1.1E+02 0.0039 19.7 4.9 52 61-113 16-69 (145)
23 2ba3_A NIKA; dimer, bacterial 27.1 54 0.0019 18.7 2.8 21 63-83 28-48 (51)
24 2fi0_A Conserved domain protei 24.3 62 0.0021 20.5 2.9 28 63-90 50-77 (81)
25 2ee7_A Sperm flagellar protein 23.1 50 0.0017 23.3 2.4 43 76-118 76-119 (127)
26 2p9x_A Hypothetical protein PH 22.8 46 0.0016 23.0 2.1 16 97-112 40-55 (99)
27 1nd9_A Translation initiation 22.7 30 0.001 19.2 1.0 25 64-88 4-28 (49)
28 3oop_A LIN2960 protein; protei 21.1 1.7E+02 0.0059 18.7 4.8 55 57-112 18-74 (143)
29 3f3x_A Transcriptional regulat 20.6 1.8E+02 0.0061 18.7 5.1 52 59-112 19-73 (144)
No 1
>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=100.00 E-value=1.3e-63 Score=363.41 Aligned_cols=118 Identities=48% Similarity=0.841 Sum_probs=115.1
Q ss_pred CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578 1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM 80 (122)
Q Consensus 1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi 80 (122)
|||||+|+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||
T Consensus 1 M~Rvkrg~~ar~Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi 80 (118)
T 3v2d_U 1 MPRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFI 80 (118)
T ss_dssp -CCCCCTTHHHHHHHHHHHHTTTCSGGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578 81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118 (122)
Q Consensus 81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~ 118 (122)
+||+++||+|||||||||||+||++|.+||+.++++++
T Consensus 81 ~gL~k~~i~LNRK~La~lAi~dp~~F~~lv~~ak~~~~ 118 (118)
T 3v2d_U 81 HGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQG 118 (118)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHCHHHHHHHHHHHHHTC-
T ss_pred HHHHHcCCCCcHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998763
No 2
>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...
Probab=100.00 E-value=9.5e-63 Score=358.94 Aligned_cols=116 Identities=53% Similarity=0.903 Sum_probs=113.5
Q ss_pred CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Q psy9578 1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFM 80 (122)
Q Consensus 1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi 80 (122)
|||||+|+++++||+|||++|+||+|++|+||++|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||
T Consensus 1 M~Rvkrg~~ar~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYS~fi 80 (118)
T 2zjr_N 1 MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFI 80 (118)
T ss_dssp -CCCCCTTHHHHHHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHH
Q psy9578 81 NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKEN 116 (122)
Q Consensus 81 ~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~ 116 (122)
+||+++||+|||||||||||+||++|.+||+.++.+
T Consensus 81 ~gL~k~~I~LNRKvLA~lAi~dp~~F~~lv~~ak~~ 116 (118)
T 2zjr_N 81 NGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 116 (118)
T ss_dssp HHHHHCTTCCCCSSHHHHHHHCHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCccHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998864
No 3
>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=100.00 E-value=4.6e-62 Score=354.90 Aligned_cols=117 Identities=62% Similarity=1.017 Sum_probs=115.4
Q ss_pred CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578 2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN 81 (122)
Q Consensus 2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~ 81 (122)
||||+|+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||+
T Consensus 1 ~Rvkrg~~ar~Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~ 80 (117)
T 3r8s_Q 1 ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFIN 80 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTTCCTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHhccccCcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578 82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118 (122)
Q Consensus 82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~ 118 (122)
||+++||+|||||||||||+||++|.+||++++++++
T Consensus 81 ~L~k~~i~LNRK~La~lAi~dp~~F~~lv~~ak~~~~ 117 (117)
T 3r8s_Q 81 GLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA 117 (117)
T ss_dssp HHHHTTCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCcHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998874
No 4
>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.2e-61 Score=353.52 Aligned_cols=116 Identities=42% Similarity=0.613 Sum_probs=114.6
Q ss_pred CCcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC--cHHH
Q psy9578 1 MPRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKM--TYNT 78 (122)
Q Consensus 1 M~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~gl--sYs~ 78 (122)
|||||+|+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+ |||.
T Consensus 1 M~Rvkrg~~ar~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~gl~~sYs~ 80 (119)
T 3bbo_S 1 MTRVKRGYIARRRRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSK 80 (119)
T ss_dssp CCCSCCTTHHHHHHHHHHHHCSSCSSSTTSSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCHHH
T ss_pred CCCCcCcHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHH
Q psy9578 79 FMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKEN 116 (122)
Q Consensus 79 fi~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~ 116 (122)
||+||+++||+|||||||||||+||.+|.+||+++++.
T Consensus 81 fi~~L~k~~I~LNRKvLa~lAi~dp~~F~~l~~~~k~~ 118 (119)
T 3bbo_S 81 FIHDLYKRQLLLNRKILAQIAILNPNCIYMIYNEIIKK 118 (119)
T ss_dssp HHHHHHHHTCCCSCSSGGGGTTSCTTTTTHHHHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHhCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999874
No 5
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=100.00 E-value=3.4e-61 Score=350.74 Aligned_cols=116 Identities=56% Similarity=0.909 Sum_probs=97.7
Q ss_pred CcccCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9578 2 PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMN 81 (122)
Q Consensus 2 ~Rvkrg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~ 81 (122)
|||| |+++++||+|||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|+||+|||.||+
T Consensus 1 ~Rvk-g~~ar~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYS~fi~ 79 (118)
T 2ghj_A 1 MRVK-GPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFIN 79 (118)
T ss_dssp ------------------CCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCC-cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578 82 GLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118 (122)
Q Consensus 82 ~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~ 118 (122)
||+++||+|||||||||||+||++|.+||+.++.+++
T Consensus 80 gL~k~~I~LNRKvLA~lAi~dp~~F~~lv~~ak~~l~ 116 (118)
T 2ghj_A 80 GLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQ 116 (118)
T ss_dssp HHTTTTCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCccHHHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998873
No 6
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=4.2e-58 Score=334.49 Aligned_cols=112 Identities=35% Similarity=0.566 Sum_probs=109.4
Q ss_pred cCcHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy9578 5 KRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTFMNGLK 84 (122)
Q Consensus 5 krg~~~~~rrkkilk~AkGf~G~~~~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYs~fi~~L~ 84 (122)
.+|+++++||+|||++|+||+|++|+||++|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||+||+
T Consensus 5 ~rg~~a~~rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~sYs~fi~~L~ 84 (118)
T 2ftc_L 5 NRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLV 84 (118)
T ss_pred ccchHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCcccchhhhHHHHhhChHHHHHHHHHHHHH
Q psy9578 85 KSSIQLDRKLLASIAITDKLVFSSIVNQIKEN 116 (122)
Q Consensus 85 k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~ 116 (122)
++||+|||||||||||+||.+|.+||+.++..
T Consensus 85 k~~I~LNRKvLa~lAi~dp~~F~~lv~~ak~~ 116 (118)
T 2ftc_L 85 KCQVELNRKVLADLAIYEPKTFKSLAALASRR 116 (118)
T ss_pred HhCCCccHHHHHHHHHcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998753
No 7
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=66.33 E-value=28 Score=23.78 Aligned_cols=56 Identities=11% Similarity=0.223 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHH--HHHHHCCcccchhhhHHHHhhChHHHHHHHHHH
Q psy9578 58 RSLWISRINAAVREHKMTYNTFM--NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQI 113 (122)
Q Consensus 58 R~LWI~RINAa~R~~glsYs~fi--~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~ 113 (122)
-++|-..++...+++|+|.++|. ..|...+=.+.-+-||+..--+|.+-..+|+.-
T Consensus 13 ~r~~~~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 13 VRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp HHHHHHHHHHHTGGGCCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 35677788899999999999874 455555555665778888888999999888754
No 8
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=60.21 E-value=6.8 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=24.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHCCcccch
Q psy9578 65 INAAVREHKMTYNTFMNGLKKSSIQLDR 92 (122)
Q Consensus 65 INAa~R~~glsYs~fi~~L~k~~i~LNR 92 (122)
|..|++++|+++|.+..-++.....+++
T Consensus 33 ~~~Aak~yGVP~sTL~~RVk~~~~~~~~ 60 (70)
T 2cob_A 33 VSKAQSIYGIPHSTLEYKVKERLGTLKN 60 (70)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHTTTTSS
T ss_pred HHHHHHHhCCChHHHHHHHHhhcccccC
Confidence 5669999999999999999888877765
No 9
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=59.02 E-value=9.3 Score=23.02 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=23.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHCCccc
Q psy9578 65 INAAVREHKMTYNTFMNGLKKSSIQL 90 (122)
Q Consensus 65 INAa~R~~glsYs~fi~~L~k~~i~L 90 (122)
+..+|+..|+|.+.|...|++.||..
T Consensus 35 ~~~aA~~LGisr~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCCC
Confidence 56799999999999999999999863
No 10
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=57.00 E-value=41 Score=22.70 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHH--HHHHHC-CcccchhhhHHHHhhChHHHHHHHHHH
Q psy9578 58 RSLWISRINAAVREHKMTYNTFM--NGLKKS-SIQLDRKLLASIAITDKLVFSSIVNQI 113 (122)
Q Consensus 58 R~LWI~RINAa~R~~glsYs~fi--~~L~k~-~i~LNRKiLa~lAi~dp~~F~~lv~~~ 113 (122)
..++..+++...+++|+|+++|. ..|... +=.+.=.-||+..-.++.+-..+++.-
T Consensus 17 ~~~l~~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 17 QQILLGEVDAVVKPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp HHHHHHHHHHHHGGGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35677899999999999999874 334332 224566778888888999998888753
No 11
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=51.80 E-value=13 Score=22.41 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHCCcc
Q psy9578 65 INAAVREHKMTYNTFMNGLKKSSIQ 89 (122)
Q Consensus 65 INAa~R~~glsYs~fi~~L~k~~i~ 89 (122)
+..+++..|+|.+.|...|++.||.
T Consensus 36 ~~~aA~~LGIsr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 36 TRKLAQRLGVSHTAIANKLKQYGIG 60 (61)
T ss_dssp HHHHHHHTTSCTHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 4568999999999999999998873
No 12
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=38.84 E-value=24 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHCCc
Q psy9578 65 INAAVREHKMTYNTFMNGLKKSSI 88 (122)
Q Consensus 65 INAa~R~~glsYs~fi~~L~k~~i 88 (122)
+..||+..|++.+.|...|++.+|
T Consensus 57 ~s~AA~~LGISR~TLyrKLkk~gi 80 (81)
T 1umq_A 57 VSETARRLNMHRRTLQRILAKRSP 80 (81)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCC
Confidence 557999999999999999998876
No 13
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.89 E-value=19 Score=21.91 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCC
Q psy9578 62 ISRINAAVREHKM 74 (122)
Q Consensus 62 I~RINAa~R~~gl 74 (122)
|.|+|+..++||+
T Consensus 34 ieRL~~LLkqHgl 46 (48)
T 3vmx_A 34 IERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 8999999999996
No 14
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=36.40 E-value=31 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHCCcc
Q psy9578 65 INAAVREHKMTYNTFMNGLKKSSIQ 89 (122)
Q Consensus 65 INAa~R~~glsYs~fi~~L~k~~i~ 89 (122)
+..||+..|+|.+.|...|++.||.
T Consensus 74 ~~~AA~~LGIsR~TL~rkLkk~gi~ 98 (98)
T 1eto_A 74 QTRAALMMGINRGTLRKKLKKYGMN 98 (98)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 4579999999999999999998863
No 15
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.39 E-value=23 Score=22.28 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCC
Q psy9578 61 WISRINAAVREHKM 74 (122)
Q Consensus 61 WI~RINAa~R~~gl 74 (122)
=|.|+|+..++||+
T Consensus 40 EieRL~~LLkqHgl 53 (58)
T 3a2a_A 40 EIERLNKLLRQHGL 53 (58)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCC
Confidence 49999999999997
No 16
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.96 E-value=18 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHCCc
Q psy9578 65 INAAVREHKMTYNTFMNGLKKSSI 88 (122)
Q Consensus 65 INAa~R~~glsYs~fi~~L~k~~i 88 (122)
+..+++..|||.+.|...|++.||
T Consensus 67 ~~~aA~~LGIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 67 KQEAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp TTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCc
Confidence 457899999999999999988765
No 17
>2ck3_I ATP synthase subunit epsilon\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} PDB: 1e79_I* 1h8e_I* 2jdi_I* 2v7q_I* 2wss_I* 2w6j_I 2w6h_I 2w6i_I 2xnd_I*
Probab=29.91 E-value=20 Score=21.87 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=11.0
Q ss_pred HhCCCcHHHHHHHH
Q psy9578 70 REHKMTYNTFMNGL 83 (122)
Q Consensus 70 R~~glsYs~fi~~L 83 (122)
|..|+||.+|.+-.
T Consensus 5 R~aG~sY~~Ys~i~ 18 (50)
T 2ck3_I 5 RQAGLSYIRYSQIC 18 (50)
T ss_dssp SSSSCCHHHHHHHH
T ss_pred HHhCccHHHHHHHH
Confidence 57899999987654
No 18
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=29.89 E-value=50 Score=18.60 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHH
Q psy9578 62 ISRINAAVREHKMTYNTFMNGL 83 (122)
Q Consensus 62 I~RINAa~R~~glsYs~fi~~L 83 (122)
..+|...|...|+|-|.||...
T Consensus 21 ~~~l~~~a~~~g~s~s~~ir~a 42 (55)
T 2k9i_A 21 HDRLMEIAKEKNLTLSDVCRLA 42 (55)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 4678889999999999998764
No 19
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=29.40 E-value=54 Score=17.81 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHH
Q psy9578 62 ISRINAAVREHKMTYNTFMNGLK 84 (122)
Q Consensus 62 I~RINAa~R~~glsYs~fi~~L~ 84 (122)
..+|...|...|+|-|.+|...-
T Consensus 14 ~~~Ld~~a~~~g~srS~~ir~ai 36 (45)
T 2cpg_A 14 LENLEKMAREMGLSKSAMISVAL 36 (45)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHH
Confidence 56788999999999999987543
No 20
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=29.15 E-value=36 Score=25.51 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHC----CcccchhhhHHHHhhChHHHHHHH
Q psy9578 72 HKMTYNTFMNGLKKS----SIQLDRKLLASIAITDKLVFSSIV 110 (122)
Q Consensus 72 ~glsYs~fi~~L~k~----~i~LNRKiLa~lAi~dp~~F~~lv 110 (122)
.+..|.......-.. +=.|||+.|+++...||+.-..|=
T Consensus 50 ~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~L~ 92 (210)
T 4i1u_A 50 AGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLE 92 (210)
T ss_dssp TCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHHHH
T ss_pred CcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHHHH
Confidence 345676666555322 336999999999999999877663
No 21
>3oee_I ATP synthase subunit epsilon; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_I* 3fks_I 3oe7_I* 2hld_I* 3oeh_I* 3ofn_I* 4b2q_I* 2xok_I* 3zry_I*
Probab=28.89 E-value=22 Score=22.50 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=7.5
Q ss_pred HhCCCcHHHHHHH
Q psy9578 70 REHKMTYNTFMNG 82 (122)
Q Consensus 70 R~~glsYs~fi~~ 82 (122)
|..||||++|.+-
T Consensus 4 R~AGltY~~Ys~i 16 (61)
T 3oee_I 4 RKAGISYAAYLNV 16 (61)
T ss_dssp ----CCHHHHHHH
T ss_pred HHhcccHHHHHHH
Confidence 6789999999764
No 22
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.89 E-value=1.1e+02 Score=19.74 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCcHHHHH--HHHHHCCcccchhhhHHHHhhChHHHHHHHHHH
Q psy9578 61 WISRINAAVREHKMTYNTFM--NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQI 113 (122)
Q Consensus 61 WI~RINAa~R~~glsYs~fi--~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~ 113 (122)
+...++..+..+|++.+.|. ..|...+ .+.-.-||+..-.++.+-..+++.-
T Consensus 16 ~~~~~~~~~~~~~lt~~q~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 16 ICNVFDKWIGQQDLNYNLFAVLYTLATEG-SRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445777889999988764 3444444 3666777777777888777777653
No 23
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=27.10 E-value=54 Score=18.67 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHH
Q psy9578 63 SRINAAVREHKMTYNTFMNGL 83 (122)
Q Consensus 63 ~RINAa~R~~glsYs~fi~~L 83 (122)
..|...+...|+|-|.|+-.+
T Consensus 28 ~~l~~~A~~~g~s~SeyiR~~ 48 (51)
T 2ba3_A 28 ETIRKKAEDSGLTVSAYIRNA 48 (51)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 468889999999999998654
No 24
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=24.29 E-value=62 Score=20.48 Aligned_cols=28 Identities=4% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHCCccc
Q psy9578 63 SRINAAVREHKMTYNTFMNGLKKSSIQL 90 (122)
Q Consensus 63 ~RINAa~R~~glsYs~fi~~L~k~~i~L 90 (122)
.-|--||..||++=..|+..|...|.++
T Consensus 50 ~TL~~aa~~~gid~d~l~~~L~~~g~~~ 77 (81)
T 2fi0_A 50 VSLKQGSKLAGTPMDKIVRTLEANGYEV 77 (81)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHTTCEE
T ss_pred CcHHHHHHHcCCCHHHHHHHHHHcCCEe
Confidence 4477789999999999999999998765
No 25
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.06 E-value=50 Score=23.27 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHH-HHHHHCCcccchhhhHHHHhhChHHHHHHHHHHHHHhc
Q psy9578 76 YNTFM-NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLT 118 (122)
Q Consensus 76 Ys~fi-~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~~k~~~~ 118 (122)
++.|- .-|++.|+.|++.++-+|+-..|.+-..|+......+.
T Consensus 76 W~~ln~kvl~kl~~~l~~~~i~~i~~~~~Gaie~lL~~L~~~l~ 119 (127)
T 2ee7_A 76 WGHLNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLE 119 (127)
T ss_dssp HHHHHHHTTGGGTCCCCHHHHHHHHTTCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 55553 46999999999999999999999999988888776553
No 26
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=22.75 E-value=46 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.0
Q ss_pred HHHhhChHHHHHHHHH
Q psy9578 97 SIAITDKLVFSSIVNQ 112 (122)
Q Consensus 97 ~lAi~dp~~F~~lv~~ 112 (122)
+||-.||.-|+..|+.
T Consensus 40 ElayeDP~kFkeaV~~ 55 (99)
T 2p9x_A 40 ELAYDDPQKFKEAVSK 55 (99)
T ss_dssp THHHHCHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHH
Confidence 6899999999998874
No 27
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=22.72 E-value=30 Score=19.18 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHCCc
Q psy9578 64 RINAAVREHKMTYNTFMNGLKKSSI 88 (122)
Q Consensus 64 RINAa~R~~glsYs~fi~~L~k~~i 88 (122)
||+-.+++.|++=..++..|+..|+
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 5677899999999999999999998
No 28
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=21.12 E-value=1.7e+02 Score=18.75 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHH--HHHHHCCcccchhhhHHHHhhChHHHHHHHHH
Q psy9578 57 FRSLWISRINAAVREHKMTYNTFM--NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQ 112 (122)
Q Consensus 57 fR~LWI~RINAa~R~~glsYs~fi--~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~ 112 (122)
.-..+-..++.....+|++.++|. ..|...+ .+.=.-||+..--+|.+-..+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~~~-~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 18 TAKKMHLFLMRSIASYDVTPEQWSVLEGIEANE-PISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHS-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHcC-CcCHHHHHHHHCCCHhhHHHHHHH
Confidence 344566677778888999988763 3444332 345556666666677777766664
No 29
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=20.58 E-value=1.8e+02 Score=18.69 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhC-CCcHHHHH--HHHHHCCcccchhhhHHHHhhChHHHHHHHHH
Q psy9578 59 SLWISRINAAVREH-KMTYNTFM--NGLKKSSIQLDRKLLASIAITDKLVFSSIVNQ 112 (122)
Q Consensus 59 ~LWI~RINAa~R~~-glsYs~fi--~~L~k~~i~LNRKiLa~lAi~dp~~F~~lv~~ 112 (122)
+.+...++.....+ |++.+.|. ..|...+- .=.-||+..-.+|.+-..+++.
T Consensus 19 ~~~~~~~~~~l~~~~~lt~~~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~ 73 (144)
T 3f3x_A 19 RGSIKEFNNRLGKLMNLSYLDFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDK 73 (144)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHH
Confidence 34556677778888 99877653 33444433 4444454445566655555543
Done!