RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9578
         (122 letters)



>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus
           thermophilus [TaxId: 274]}
          Length = 117

 Score =  150 bits (382), Expect = 3e-49
 Identities = 56/116 (48%), Positives = 80/116 (68%)

Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
           PR K GV  R +HKK+LK AKGY+G R+  +R A++ +  A  YAY  R+ +KR FR LW
Sbjct: 1   PRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLW 60

Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           I RINAA R+H + Y+TF++GLKK+ I++DRK LA +A+ +  VF+ +V + K   
Sbjct: 61  IVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQ 116


>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 117

 Score =  147 bits (374), Expect = 5e-48
 Identities = 61/116 (52%), Positives = 81/116 (69%)

Query: 2   PRVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLW 61
           PR K G+  R RHKKVLK+AKG++G R+  YR A Q +++A  Y YRDRRNKKR FR LW
Sbjct: 1   PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLW 60

Query: 62  ISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           I RINA  R H M Y+TF+NGLK+++I L+RK+LA IA  +   F ++V+  +   
Sbjct: 61  IQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR 116


>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli
           [TaxId: 562]}
          Length = 115

 Score =  145 bits (368), Expect = 3e-47
 Identities = 73/115 (63%), Positives = 96/115 (83%)

Query: 3   RVKRGVTARARHKKVLKQAKGYFGRRNSVYRVAKQAVMHAMQYAYRDRRNKKRVFRSLWI 62
           RVKRGV ARARHKK+LKQAKGY+G R+ VYRVA QAV+ A QYAYRDRR +KR FR LWI
Sbjct: 1   RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWI 60

Query: 63  SRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           +RINAA R++ ++Y+ F+NGLKK+S+++DRK+LA IA+ DK+ F+++V + K  L
Sbjct: 61  ARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAAL 115


>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 60

 Score = 84.2 bits (209), Expect = 1e-23
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 61  WISRINAAVREHKMTYNTFMNGLKKSSIQLDRKLLASIAITDKLVFSSIVNQIKENL 117
           WI+RINAAVR + + Y+TF+NGLKK+ I+LDRK+LA +A+ D   F  +VN++KE L
Sbjct: 1   WIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEAL 57


>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
           subunit {Thale cress (Arabidopsis thaliana), chloroplast
           [TaxId: 3702]}
          Length = 179

 Score = 26.5 bits (57), Expect = 0.86
 Identities = 6/43 (13%), Positives = 20/43 (46%)

Query: 37  QAVMHAMQYAYRDRRNKKRVFRSLWISRINAAVREHKMTYNTF 79
           +  +  M     +R  + ++   +W + +N   ++  +++ TF
Sbjct: 136 KLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTF 178


>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 70

 Score = 24.3 bits (53), Expect = 2.1
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 84  KKSSIQLDRKLLASIAITDKLVFSSIVNQIKENLTNK 120
           KK  +  + K L+++ + ++      +N IK  L   
Sbjct: 14  KKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAA 50


>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2
          [TaxId: 11060]}
          Length = 150

 Score = 24.3 bits (53), Expect = 4.0
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 7/59 (11%)

Query: 21 AKGYFGRRNSVYRVAKQAVMHAMQYAYRDR--RNKKRVFRSLWISRINAAVREHKMTYN 77
           KG  G       V K+   H M +  R     +K +     W     A V++  ++Y 
Sbjct: 10 QKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSW-----ADVKKDLISYG 63


>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId:
          11082]}
          Length = 152

 Score = 23.5 bits (51), Expect = 6.7
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 7/59 (11%)

Query: 21 AKGYFGRRNSVYRVAKQAVMHAMQYAYRDR--RNKKRVFRSLWISRINAAVREHKMTYN 77
           +G  G   +   V  + V H + +  +     + +      W      +V+E ++ Y 
Sbjct: 9  TRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYW-----GSVKEDRLCYG 62


>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
          4530]}
          Length = 140

 Score = 23.1 bits (50), Expect = 9.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 66 NAAVREHKMTYNT 78
           A V+++K+TY T
Sbjct: 4  KAGVKDYKLTYYT 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 398,408
Number of extensions: 15508
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 12
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.9 bits)