BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9579
(887 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/855 (48%), Positives = 563/855 (65%), Gaps = 23/855 (2%)
Query: 35 LIDNYRRLGVYFANLDPLK--QKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKK 92
LI+ YR G ANLDPL Q+ K +L + F+D E+D NV + G +
Sbjct: 95 LINAYRFRGHQHANLDPLGLWQQDKVADL----DPSFHDLTEADFQETFNVGSFASGKET 150
Query: 93 TTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLT 152
L LL+ LK TY IG+E+M+I + EE WIQ+++ES +AT F+ E+KK L LT
Sbjct: 151 MKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRAT--FNSEEKKRFLSELT 208
Query: 153 AAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLV 212
AAE E YL ++ G KRFSLEG ++ I L E+I+H+G G RE+V+GMAHRGRLNVLV
Sbjct: 209 AAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLV 268
Query: 213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINP 272
N+LGKKP++LFDEF K+ E+L +GDVKYH GFSS+ T GG++HL+LAFNPSHLEI++P
Sbjct: 269 NVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSP 328
Query: 273 VVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYXXXXXXXXXX 332
VV GS +AR++R D+ +VLP+ +HGDAA +GQGVV ETLN SK Y
Sbjct: 329 VVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVI 388
Query: 333 XXXXXXXTS-PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDC 391
TS P D RST YCTDIGK+++AP+FHVN DDPE+V VT++A+++R FK+D
Sbjct: 389 NNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDV 448
Query: 392 IINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKE 451
I+++C+R+ GHNE D PS TQPLMY+KI KHP R++Y++KL+ +K+ T ++ M+
Sbjct: 449 FIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL 508
Query: 452 FNDMINSGKSIVNSI-PSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNI 510
+ D +++G +V P N W+P+L + + + + +++L+ L+K+I+ +
Sbjct: 509 YRDALDAGDCVVAEWRPMNM----HSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTV 564
Query: 511 PKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFS 570
P+ ++ V KI DR M G+ DWG AE+LAYA+LV G VRLSG+DSGRGTF
Sbjct: 565 PEAVEMQSRVAKIYADRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF 624
Query: 571 HRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASP 630
HRHA+++NQ ++ STY PL ++ Q F + +S+LSEEA+L FEYG++TA P
Sbjct: 625 HRHAVIHNQ--------SNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEP 676
Query: 631 NTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLER 690
TLTIWEAQFGDFANGAQV+IDQFISS E+KWGR+ GL ++LPHGYEGQGPEHSSARLER
Sbjct: 677 RTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLER 736
Query: 691 FLQLCANNNIQIVQPTSASQIFHLLRYQXXXXXXXXXXXXXXXSLLRKKEASSTLMDLAT 750
+LQLCA N+Q+ P++ +Q++H+LR Q SLLR A S+L +LA
Sbjct: 737 YLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN 796
Query: 751 GKFNXXXXXXXXXXXXXXXXXXXACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNED 810
G F CSGK+YYDL R+K N++DV I+RIEQLYPFP++
Sbjct: 797 GTF-LPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKA 855
Query: 811 FLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYY 870
++L++F + + +W Q+EP NQGAW + + + + L Y GR SASPA GY
Sbjct: 856 MQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYM 915
Query: 871 SKHCKEQITLLNNAF 885
S H K+Q L+N+A
Sbjct: 916 SVHQKQQQDLVNDAL 930
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/855 (47%), Positives = 563/855 (65%), Gaps = 23/855 (2%)
Query: 35 LIDNYRRLGVYFANLDPLK--QKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKK 92
LI+ YR G ANLDPL Q+ K +L + F+D E+D NV + G +
Sbjct: 95 LINAYRFRGHQHANLDPLGLWQQDKVADL----DPSFHDLTEADFQETFNVGSFASGKET 150
Query: 93 TTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLT 152
L LL+ LK TY IG+E+M+I + EE WIQ+++ES +AT F+ E+KK L LT
Sbjct: 151 MKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRAT--FNSEEKKRFLSELT 208
Query: 153 AAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLV 212
AAE E YL ++ G KRFSLEG ++ I L E+I+H+G G RE+V+GMAHRGRLNVLV
Sbjct: 209 AAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLV 268
Query: 213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINP 272
N+LGKKP++LFDEF K+ E+L +GDVKYH GFSS+ T GG++HL+LAFNPSHLEI++P
Sbjct: 269 NVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSP 328
Query: 273 VVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYXXXXXXXXXX 332
VV GS +AR++R D+ +VLP+ +HGDAA +GQGVV ETLN SK Y
Sbjct: 329 VVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVI 388
Query: 333 XXXXXXXTS-PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDC 391
TS P D RST YCTDIGK+++AP+FHVN DDPE+V VT++A+++R FK+D
Sbjct: 389 NNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDV 448
Query: 392 IINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKE 451
I+++C+R+ GHNE D PS TQPLMY+KI KHP R++Y++KL+ +K+ T ++ M+
Sbjct: 449 FIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL 508
Query: 452 FNDMINSGKSIVNSI-PSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNI 510
+ D +++G +V P N W+P+L + + + + +++L+ L+K+I+ +
Sbjct: 509 YRDALDAGDCVVAEWRPMNM----HSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTV 564
Query: 511 PKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFS 570
P+ ++ V KI DR M G+ DWG AE+LAYA+LV G VRLSG+DSGRGTF
Sbjct: 565 PEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF 624
Query: 571 HRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASP 630
HRHA+++NQ ++ STY PL ++ Q F + +S+LSEEA+L FEYG++TA P
Sbjct: 625 HRHAVIHNQ--------SNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEP 676
Query: 631 NTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLER 690
TLTIWEAQFGDFANGAQV+IDQFISS E+KWGR+ GL ++LPHGYEGQGPEHSSARLER
Sbjct: 677 RTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLER 736
Query: 691 FLQLCANNNIQIVQPTSASQIFHLLRYQXXXXXXXXXXXXXXXSLLRKKEASSTLMDLAT 750
+LQLCA N+Q+ P++ +Q++H+LR Q SLLR A S+L +LA
Sbjct: 737 YLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAN 796
Query: 751 GKFNXXXXXXXXXXXXXXXXXXXACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNED 810
G F CSGK+YYDL R+K N++DV I+RIEQLYPFP++
Sbjct: 797 GTF-LPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKA 855
Query: 811 FLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYY 870
++L++F + + +W Q+EP NQGAW + + + + L Y GR SASPA G+
Sbjct: 856 MQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGHM 915
Query: 871 SKHCKEQITLLNNAF 885
S H K+Q L+N+A
Sbjct: 916 SVHQKQQQDLVNDAL 930
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 605 bits (1561), Expect = e-173, Method: Compositional matrix adjust.
Identities = 330/866 (38%), Positives = 484/866 (55%), Gaps = 27/866 (3%)
Query: 35 LIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTT 94
LI YR G A++DPL+ L++ + D+D V+ F GV++
Sbjct: 259 LIAAYRNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGLTLWDLDREFKVDG-FAGVQRKK 317
Query: 95 LRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAA 154
LR++L L++ Y ++G E+ +I E+ WIQE++E+ P +++K IL L AA
Sbjct: 318 LRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKHDKPTVAEQKY--ILSKLNAA 375
Query: 155 EEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNI 214
E FE +L +YVGQKRFSLEG+E+ I ++ +I + G+ E+VI M HRGRLNVL NI
Sbjct: 376 EAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANI 435
Query: 215 LGKKPKELFDEFEDK--NSENLLSGDVKYHQGFSSNINTPGGV--IHLSLAFNPSHLEII 270
+GK ++F EFE S+ SGDVKYH G + G I +SL NPSHLE +
Sbjct: 436 VGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAV 495
Query: 271 NPVVEGSAKARM-------ERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYX 323
+PV+EG +A+ E D++F V+P+++HGDAAF+GQGVV ETLN + + Y
Sbjct: 496 DPVLEGLVRAKQDLLDTGEEGSDNRF--SVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 553
Query: 324 XXXXXXXXXXXXXXXXTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEY 383
T+P D RS+ YCTD+ K+I AP+FHVNGDDPE+ V ++AV++
Sbjct: 554 TGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDF 613
Query: 384 RMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKN 443
R FKKD +I+++C+R+ GHNE D PS+TQP MY I G R+ Y+ L + ++
Sbjct: 614 RQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 673
Query: 444 ESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFL 503
E+E+ ++++ + + V + + I E + + T++ L+ +
Sbjct: 674 EAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPS----KLATAVDKAMLQRI 729
Query: 504 SKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQD 563
+P+GF +H V+ +L+ R EM + +DW AE LA SL+ G VRLSGQD
Sbjct: 730 GDAHLALPEGFTVHPRVRPVLEKRREMAY-EGRIDWAFAELLALGSLIAEGKLVRLSGQD 788
Query: 564 SGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEY 623
+ RGTF+ RHA++ D + E+ T + + + KF + NS LSE A +GFEY
Sbjct: 789 TQRGTFTQRHAVIV--DRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEY 846
Query: 624 GFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEH 683
G+S +P+ + +WEAQFGDF NGAQ IID+FISS E KWG++S + L+LPHG+EGQGP+H
Sbjct: 847 GYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDH 906
Query: 684 SSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQXXXXXXXXXXXXXXXSLLRKKEASS 743
+S R+ERFLQL A ++ I P++ + FHLLR S+LR K A S
Sbjct: 907 TSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVS 966
Query: 744 TLMDLATGKFNXXXXX---XXXXXXXXXXXXXXACSGKIYYDLFNFRKKKNKNDVVIIRI 800
+ D KF SGKIYY+L + K+N+ DV I+RI
Sbjct: 967 DIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRI 1026
Query: 801 EQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL-NSTQKLIYVGR 859
EQL P P + L ++ ++ W Q+EP NQGAWP + + L + L + R
Sbjct: 1027 EQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISR 1086
Query: 860 SCSASPASGYYSKHCKEQITLLNNAF 885
++P+SG H EQ +L+ AF
Sbjct: 1087 RAMSAPSSGSSKVHAVEQQEILDTAF 1112
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 605 bits (1559), Expect = e-173, Method: Compositional matrix adjust.
Identities = 330/866 (38%), Positives = 484/866 (55%), Gaps = 27/866 (3%)
Query: 35 LIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTT 94
LI YR G A++DPL+ L++ + D+D V+ F GV++
Sbjct: 14 LIAAYRNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGLTLWDLDREFKVDG-FAGVQRKK 72
Query: 95 LRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAA 154
LR++L L++ Y ++G E+ +I E+ WIQE++E+ P +++K IL L AA
Sbjct: 73 LRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKHDKPTVAEQKY--ILSKLNAA 130
Query: 155 EEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNI 214
E FE +L +YVGQKRFSLEG+E+ I ++ +I + G+ E+VI M HRGRLNVL NI
Sbjct: 131 EAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANI 190
Query: 215 LGKKPKELFDEFEDK--NSENLLSGDVKYHQGFSSNINTPGGV--IHLSLAFNPSHLEII 270
+GK ++F EFE S+ SGDVKYH G + G I +SL NPSHLE +
Sbjct: 191 VGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAV 250
Query: 271 NPVVEGSAKARM-------ERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYX 323
+PV+EG +A+ E D++F V+P+++HGDAAF+GQGVV ETLN + + Y
Sbjct: 251 DPVLEGLVRAKQDLLDTGEEGSDNRF--SVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 308
Query: 324 XXXXXXXXXXXXXXXXTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEY 383
T+P D RS+ YCTD+ K+I AP+FHVNGDDPE+ V ++AV++
Sbjct: 309 TGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDF 368
Query: 384 RMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKN 443
R FKKD +I+++C+R+ GHNE D PS+TQP MY I G R+ Y+ L + ++
Sbjct: 369 RQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 428
Query: 444 ESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFL 503
E+E+ ++++ + + V + + I E + + T++ L+ +
Sbjct: 429 EAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPS----KLATAVDKAMLQRI 484
Query: 504 SKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQD 563
+P+GF +H V+ +L+ R EM + +DW AE LA SL+ G VRLSGQD
Sbjct: 485 GDAHLALPEGFTVHPRVRPVLEKRREMAY-EGRIDWAFAELLALGSLIAEGKLVRLSGQD 543
Query: 564 SGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEY 623
+ RGTF+ RHA++ D + E+ T + + + KF + NS LSE A +GFEY
Sbjct: 544 TQRGTFTQRHAVIV--DRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEY 601
Query: 624 GFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEH 683
G+S +P+ + +WEAQFGDF NGAQ IID+FISS E KWG++S + L+LPHG+EGQGP+H
Sbjct: 602 GYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDH 661
Query: 684 SSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQXXXXXXXXXXXXXXXSLLRKKEASS 743
+S R+ERFLQL A ++ I P++ + FHLLR S+LR K A S
Sbjct: 662 TSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVS 721
Query: 744 TLMDLATGKFNXXXXXXXXXXXXXXXXXXXA---CSGKIYYDLFNFRKKKNKNDVVIIRI 800
+ D KF SGKIYY+L + K+N+ DV I+RI
Sbjct: 722 DIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRI 781
Query: 801 EQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL-NSTQKLIYVGR 859
EQL P P + L ++ ++ W Q+EP NQGAWP + + L + L + R
Sbjct: 782 EQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISR 841
Query: 860 SCSASPASGYYSKHCKEQITLLNNAF 885
++P+SG H EQ +L+ AF
Sbjct: 842 RAMSAPSSGSSKVHAVEQQEILDTAF 867
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 604 AKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWG 663
K + N+ L E+ I+GF G A I E QF D+ A DQ ++ + +
Sbjct: 65 GKDRVFNTPLCEQGIVGF--GIGIAVTGATAIAEIQFADYIFPA---FDQIVNEAAKYRY 119
Query: 664 R------ISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLL 715
R LT+ P G G G ++S E F C I++V P S Q LL
Sbjct: 120 RSGDLFNCGSLTIRSPWGCVGHGALYASQSPEAFFAHCP--GIKVVIPRSPFQAKGLL 175
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 361 PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN-EQDTPS--LTQPLMY 417
P V+G DP +V K A E + + +I +CFR H D P+ ++ L
Sbjct: 230 PGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELEN 289
Query: 418 KKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYD 473
+ K P +R + L+ + + ++ E N+I++ + I + P + D
Sbjct: 290 EWAKKDPLVR--FRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTD 343
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 361 PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN-EQDTPS--LTQPLMY 417
P V+G DP +V K A E + + +I +CFR H D P+ ++ L
Sbjct: 229 PGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELEN 288
Query: 418 KKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYD 473
+ K P +R + L+ + + ++ E N+I++ + I + P + D
Sbjct: 289 EWAKKDPLVR--FRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTD 342
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 361 PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN-EQDTPS--LTQPLMY 417
P V+G DP +V K A E + + +I +CFR H D P+ ++ L
Sbjct: 229 PGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELEN 288
Query: 418 KKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYD 473
+ K P +R + L+ + + ++ E N+I++ + I + P + D
Sbjct: 289 EWAKKDPLVR--FRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTD 342
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 361 PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN-EQDTPS--LTQPLMY 417
P V+G DP +V K A E + + +I +CFR H D P+ ++ L
Sbjct: 230 PGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELEN 289
Query: 418 KKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYD 473
+ K P +R + L+ + + ++ E N+I++ + I + P + D
Sbjct: 290 EWAKKDPLVR--FRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTD 343
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 474 KSKSEWAPFLKNGYIDNCNTSISLEK--------LKFLSKKITN 509
K+ +W PFLK G+I++C +EK +K+L ++ N
Sbjct: 504 KNMEKWIPFLKRGHIEDCGHWTQIEKPTEVNQILIKWLQTEVQN 547
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,350,608
Number of Sequences: 62578
Number of extensions: 1012859
Number of successful extensions: 2470
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2428
Number of HSP's gapped (non-prelim): 20
length of query: 887
length of database: 14,973,337
effective HSP length: 107
effective length of query: 780
effective length of database: 8,277,491
effective search space: 6456442980
effective search space used: 6456442980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)