Query psy9579
Match_columns 887
No_of_seqs 313 out of 2318
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:15:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450|consensus 100.0 2E-243 5E-248 2009.4 68.3 853 24-887 123-1013(1017)
2 PRK12270 kgd alpha-ketoglutara 100.0 2E-239 5E-244 2053.5 80.0 845 23-887 380-1228(1228)
3 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 5E-230 1E-234 2037.5 87.5 844 28-885 75-929 (929)
4 PRK09404 sucA 2-oxoglutarate d 100.0 2E-229 4E-234 2042.2 88.3 843 28-886 79-924 (924)
5 COG0567 SucA 2-oxoglutarate de 100.0 1E-228 3E-233 1976.1 65.9 860 9-887 47-906 (906)
6 KOG0451|consensus 100.0 6E-208 1E-212 1691.7 49.1 862 2-886 19-913 (913)
7 cd02016 TPP_E1_OGDC_like Thiam 100.0 5.2E-78 1.1E-82 641.5 24.6 261 157-417 1-265 (265)
8 COG1071 AcoA Pyruvate/2-oxoglu 100.0 2.2E-68 4.7E-73 584.5 30.8 302 137-470 22-333 (358)
9 PF00676 E1_dh: Dehydrogenase 100.0 7.4E-66 1.6E-70 562.7 27.0 293 149-470 1-298 (300)
10 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.3E-63 2.9E-68 527.8 24.8 299 537-884 8-318 (324)
11 PLN02269 Pyruvate dehydrogenas 100.0 6.8E-63 1.5E-67 549.6 31.4 298 137-470 25-332 (362)
12 TIGR03182 PDH_E1_alph_y pyruva 100.0 1E-60 2.2E-65 525.7 29.8 296 141-470 1-305 (315)
13 PLN02374 pyruvate dehydrogenas 100.0 1.5E-60 3.2E-65 540.5 31.2 306 136-470 80-396 (433)
14 KOG0225|consensus 100.0 9.5E-60 2.1E-64 498.8 24.0 306 136-483 53-369 (394)
15 CHL00149 odpA pyruvate dehydro 100.0 1.9E-58 4.1E-63 512.0 31.4 305 137-470 15-330 (341)
16 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 4.8E-57 1E-61 492.3 28.7 289 147-463 1-293 (293)
17 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.6E-55 3.5E-60 489.2 30.8 296 137-470 19-318 (341)
18 PRK12315 1-deoxy-D-xylulose-5- 100.0 7.9E-50 1.7E-54 471.1 45.2 540 138-884 14-576 (581)
19 KOG1182|consensus 100.0 4.7E-51 1E-55 428.4 21.1 340 136-514 80-425 (432)
20 KOG0525|consensus 100.0 5E-49 1.1E-53 401.4 18.1 287 551-883 55-355 (362)
21 KOG0524|consensus 100.0 2.5E-47 5.4E-52 394.4 18.5 303 536-884 40-354 (359)
22 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 3.6E-43 7.7E-48 416.9 42.7 434 262-865 108-590 (617)
23 PRK05444 1-deoxy-D-xylulose-5- 100.0 1.6E-40 3.5E-45 393.0 43.0 453 262-885 114-577 (580)
24 PRK12571 1-deoxy-D-xylulose-5- 100.0 1.2E-37 2.5E-42 371.1 43.8 447 270-884 124-623 (641)
25 PLN02582 1-deoxy-D-xylulose-5- 100.0 2.6E-36 5.7E-41 358.3 47.0 439 262-864 141-639 (677)
26 PLN02234 1-deoxy-D-xylulose-5- 100.0 1.8E-37 3.9E-42 365.5 34.1 422 262-847 174-621 (641)
27 PRK05899 transketolase; Review 100.0 3.5E-36 7.6E-41 359.0 36.1 447 263-835 116-579 (624)
28 CHL00144 odpB pyruvate dehydro 100.0 8.9E-37 1.9E-41 337.4 25.9 293 548-884 15-319 (327)
29 PRK11892 pyruvate dehydrogenas 100.0 7E-37 1.5E-41 350.8 25.3 294 548-884 153-458 (464)
30 PTZ00182 3-methyl-2-oxobutanat 100.0 1.2E-36 2.7E-41 339.4 26.4 296 547-885 45-352 (355)
31 PLN02683 pyruvate dehydrogenas 100.0 1.5E-35 3.4E-40 330.7 26.7 310 537-886 27-348 (356)
32 PRK09212 pyruvate dehydrogenas 100.0 1.3E-35 2.8E-40 328.4 24.8 295 546-884 13-319 (327)
33 PLN02225 1-deoxy-D-xylulose-5- 100.0 7.8E-32 1.7E-36 318.3 41.1 523 126-865 78-664 (701)
34 TIGR00232 tktlase_bact transke 100.0 6.9E-31 1.5E-35 314.0 45.0 462 262-831 107-605 (653)
35 PLN02790 transketolase 100.0 2.6E-27 5.7E-32 283.4 43.5 471 262-836 102-610 (654)
36 PRK12753 transketolase; Review 100.0 1.4E-26 3E-31 277.1 47.9 454 263-811 112-594 (663)
37 PRK12754 transketolase; Review 100.0 7.9E-27 1.7E-31 278.0 42.6 444 263-809 112-592 (663)
38 PTZ00089 transketolase; Provis 100.0 3E-26 6.5E-31 274.6 40.1 475 262-835 113-616 (661)
39 PF02779 Transket_pyr: Transke 99.9 3.7E-26 7.9E-31 232.4 12.9 177 536-739 2-178 (178)
40 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 1.2E-24 2.6E-29 219.5 12.3 152 549-733 9-167 (167)
41 COG1154 Dxs Deoxyxylulose-5-ph 99.9 1.2E-19 2.7E-24 208.0 36.1 521 138-861 16-592 (627)
42 TIGR03186 AKGDH_not_PDH alpha- 99.9 9.6E-20 2.1E-24 220.3 34.7 501 265-860 189-828 (889)
43 PRK09405 aceE pyruvate dehydro 99.8 6E-18 1.3E-22 204.9 36.2 502 271-860 201-831 (891)
44 KOG0523|consensus 99.8 1.1E-17 2.3E-22 191.1 29.8 441 265-831 118-567 (632)
45 PRK13012 2-oxoacid dehydrogena 99.8 1.9E-17 4.2E-22 201.2 32.8 461 266-812 204-779 (896)
46 cd07033 TPP_PYR_DXS_TK_like Py 99.8 1.2E-18 2.5E-23 174.0 12.7 145 549-733 9-156 (156)
47 smart00861 Transket_pyr Transk 99.8 8.9E-18 1.9E-22 169.0 14.6 159 542-733 5-167 (168)
48 PRK05261 putative phosphoketol 99.7 3.1E-15 6.7E-20 179.7 35.4 437 264-788 141-634 (785)
49 cd02007 TPP_DXS Thiamine pyrop 99.7 1.4E-16 2.9E-21 164.9 10.6 122 262-402 72-194 (195)
50 COG3958 Transketolase, C-termi 99.6 1.5E-14 3.3E-19 154.1 22.1 267 540-862 12-283 (312)
51 COG0021 TktA Transketolase [Ca 99.6 2E-12 4.3E-17 150.0 34.0 471 265-841 116-623 (663)
52 cd02012 TPP_TK Thiamine pyroph 99.6 2.8E-14 6.1E-19 153.4 17.5 133 264-407 104-236 (255)
53 cd02011 TPP_PK Thiamine pyroph 99.6 7.9E-15 1.7E-19 154.1 11.9 169 174-386 2-175 (227)
54 PRK11864 2-ketoisovalerate fer 99.5 1.7E-13 3.8E-18 149.6 13.3 236 203-464 14-297 (300)
55 TIGR00759 aceE pyruvate dehydr 99.2 4.7E-09 1E-13 127.2 27.5 463 265-811 189-767 (885)
56 COG3959 Transketolase, N-termi 99.2 1E-10 2.2E-15 121.1 10.7 124 263-398 117-241 (243)
57 PF00456 Transketolase_N: Tran 99.1 1.6E-10 3.5E-15 128.8 10.0 134 265-405 111-250 (332)
58 cd00568 TPP_enzymes Thiamine p 99.1 9.5E-11 2.1E-15 116.9 6.7 113 264-397 45-168 (168)
59 cd02017 TPP_E1_EcPDC_like Thia 99.0 8.6E-09 1.9E-13 116.0 19.0 134 265-404 118-323 (386)
60 cd02002 TPP_BFDC Thiamine pyro 99.0 4.7E-10 1E-14 113.8 7.6 112 265-397 49-178 (178)
61 cd02004 TPP_BZL_OCoD_HPCL Thia 99.0 1.1E-09 2.3E-14 110.9 8.0 112 265-397 48-171 (172)
62 cd03372 TPP_ComE Thiamine pyro 98.8 1.4E-08 3.1E-13 103.9 7.8 111 265-398 42-155 (179)
63 cd02014 TPP_POX Thiamine pyrop 98.8 2.7E-08 5.9E-13 101.4 9.5 113 265-398 51-173 (178)
64 TIGR03336 IOR_alpha indolepyru 98.8 4.5E-07 9.8E-12 109.0 21.1 239 614-875 54-329 (595)
65 cd02015 TPP_AHAS Thiamine pyro 98.7 2.3E-08 5.1E-13 102.5 7.3 114 265-399 50-175 (186)
66 PRK07524 hypothetical protein; 98.7 3.3E-08 7.2E-13 117.1 8.1 117 265-402 407-533 (535)
67 cd02013 TPP_Xsc_like Thiamine 98.6 3.1E-08 6.6E-13 102.8 5.8 117 265-399 53-180 (196)
68 PF02780 Transketolase_C: Tran 98.6 7.4E-09 1.6E-13 99.4 0.6 94 763-861 6-103 (124)
69 PRK08327 acetolactate synthase 98.6 1.2E-07 2.7E-12 113.2 10.8 118 265-397 430-566 (569)
70 PRK07119 2-ketoisovalerate fer 98.6 4.9E-06 1.1E-10 94.1 21.5 201 608-829 51-306 (352)
71 PRK07092 benzoylformate decarb 98.5 1.4E-07 3.1E-12 111.7 7.6 112 265-397 407-529 (530)
72 PRK08659 2-oxoglutarate ferred 98.5 7.5E-06 1.6E-10 93.3 20.9 207 608-830 51-334 (376)
73 cd03371 TPP_PpyrDC Thiamine py 98.5 4.5E-07 9.7E-12 93.7 9.5 116 265-400 48-165 (188)
74 PF13292 DXP_synthase_N: 1-deo 98.5 3E-07 6.4E-12 98.5 7.6 123 262-397 108-270 (270)
75 cd02006 TPP_Gcl Thiamine pyrop 98.5 3E-07 6.6E-12 95.7 7.4 115 266-397 58-193 (202)
76 cd02008 TPP_IOR_alpha Thiamine 98.5 4.1E-07 8.9E-12 92.9 8.2 115 265-397 51-176 (178)
77 PRK08366 vorA 2-ketoisovalerat 98.5 6.7E-06 1.5E-10 94.0 18.7 217 611-846 54-335 (390)
78 cd02001 TPP_ComE_PpyrDC Thiami 98.4 4.9E-07 1.1E-11 90.8 7.5 111 265-397 42-154 (157)
79 PRK06725 acetolactate synthase 98.4 4.6E-07 9.9E-12 108.4 8.1 112 265-397 422-544 (570)
80 TIGR03846 sulfopy_beta sulfopy 98.4 8.3E-07 1.8E-11 91.2 8.4 110 266-397 43-155 (181)
81 cd02005 TPP_PDC_IPDC Thiamine 98.4 1.7E-06 3.6E-11 88.9 10.4 114 267-399 52-175 (183)
82 PRK09622 porA pyruvate flavodo 98.4 1.7E-05 3.7E-10 91.3 19.5 212 614-842 64-340 (407)
83 PRK11865 pyruvate ferredoxin o 98.4 4.7E-06 1E-10 91.8 14.3 180 265-458 69-294 (299)
84 PRK09627 oorA 2-oxoglutarate-a 98.3 1.1E-05 2.5E-10 91.7 17.0 225 614-861 55-363 (375)
85 PF02775 TPP_enzyme_C: Thiamin 98.3 3.3E-07 7.1E-12 91.0 3.9 112 265-395 28-153 (153)
86 cd02010 TPP_ALS Thiamine pyrop 98.3 1E-06 2.2E-11 90.1 7.3 112 267-399 50-171 (177)
87 PRK08266 hypothetical protein; 98.3 1.1E-06 2.3E-11 104.5 8.7 118 265-403 402-530 (542)
88 PRK06163 hypothetical protein; 98.3 1.3E-06 2.8E-11 91.4 8.1 113 266-398 58-173 (202)
89 COG3957 Phosphoketolase [Carbo 98.3 5.2E-05 1.1E-09 89.7 21.4 229 550-807 414-670 (793)
90 PRK06112 acetolactate synthase 98.3 1.3E-06 2.9E-11 104.5 8.5 112 265-397 437-559 (578)
91 TIGR03710 OAFO_sf 2-oxoacid:ac 98.3 2E-05 4.4E-10 94.3 18.3 204 613-830 244-524 (562)
92 PRK08155 acetolactate synthase 98.3 1.6E-06 3.5E-11 103.6 8.5 112 265-397 419-542 (564)
93 PRK06546 pyruvate dehydrogenas 98.2 2.6E-06 5.7E-11 102.1 8.9 112 265-397 408-529 (578)
94 cd02009 TPP_SHCHC_synthase Thi 98.2 2.7E-06 5.8E-11 86.7 7.6 111 265-397 51-174 (175)
95 PRK07710 acetolactate synthase 98.2 3.4E-06 7.4E-11 101.0 9.3 114 265-399 424-549 (571)
96 PRK06882 acetolactate synthase 98.2 4.3E-06 9.2E-11 100.1 8.9 114 266-399 422-547 (574)
97 PRK11269 glyoxylate carboligas 98.1 4.7E-06 1E-10 100.2 8.4 116 265-397 419-555 (591)
98 PRK07525 sulfoacetaldehyde ace 98.1 3.7E-06 8.1E-11 101.0 7.0 117 265-399 435-563 (588)
99 cd02003 TPP_IolD Thiamine pyro 98.1 7.5E-06 1.6E-10 85.6 8.4 112 266-398 49-184 (205)
100 PRK08199 thiamine pyrophosphat 98.1 9.7E-06 2.1E-10 96.8 10.3 113 265-398 415-538 (557)
101 cd02018 TPP_PFOR Thiamine pyro 98.1 1.8E-05 3.9E-10 84.8 10.7 118 268-397 67-202 (237)
102 PRK06154 hypothetical protein; 98.1 7.5E-06 1.6E-10 98.0 8.3 114 266-397 432-554 (565)
103 TIGR00118 acolac_lg acetolacta 98.0 7.7E-06 1.7E-10 97.6 7.5 113 266-399 413-537 (558)
104 PRK07586 hypothetical protein; 98.0 9.6E-06 2.1E-10 95.8 8.0 112 265-397 385-514 (514)
105 TIGR01504 glyox_carbo_lig glyo 98.0 5.6E-06 1.2E-10 99.5 5.8 116 265-397 418-554 (588)
106 PRK08527 acetolactate synthase 98.0 1.5E-05 3.1E-10 95.5 9.1 114 265-399 414-539 (563)
107 PRK09628 oorB 2-oxoglutarate-a 98.0 1.7E-05 3.6E-10 86.9 8.8 112 268-397 71-200 (277)
108 PRK08367 porA pyruvate ferredo 98.0 0.00033 7.1E-09 80.5 19.4 214 613-848 57-339 (394)
109 TIGR02720 pyruv_oxi_spxB pyruv 98.0 2E-05 4.4E-10 94.5 10.0 114 265-397 408-531 (575)
110 COG0028 IlvB Thiamine pyrophos 98.0 1E-05 2.2E-10 96.5 7.1 114 266-400 409-533 (550)
111 cd03376 TPP_PFOR_porB_like Thi 98.0 3.5E-05 7.6E-10 82.5 10.5 104 292-404 80-206 (235)
112 PRK07064 hypothetical protein; 98.0 1.9E-05 4E-10 94.0 8.9 113 265-398 405-528 (544)
113 CHL00099 ilvB acetohydroxyacid 97.9 1.9E-05 4.1E-10 94.9 8.6 112 265-397 430-554 (585)
114 PRK09124 pyruvate dehydrogenas 97.9 2.1E-05 4.6E-10 94.2 8.6 111 266-397 409-529 (574)
115 PRK12474 hypothetical protein; 97.9 2.4E-05 5.1E-10 92.8 8.7 112 265-397 389-518 (518)
116 PRK05778 2-oxoglutarate ferred 97.9 2.5E-05 5.5E-10 86.4 7.1 120 268-405 73-212 (301)
117 TIGR03297 Ppyr-DeCO2ase phosph 97.8 3.2E-05 7E-10 87.7 7.8 113 265-397 221-335 (361)
118 cd03375 TPP_OGFOR Thiamine pyr 97.8 4E-05 8.7E-10 79.5 8.0 113 267-397 53-183 (193)
119 PRK07979 acetolactate synthase 97.8 3E-05 6.6E-10 93.0 7.8 116 265-398 421-548 (574)
120 PRK07418 acetolactate synthase 97.8 3.3E-05 7.1E-10 93.5 7.6 113 265-398 434-559 (616)
121 PRK08273 thiamine pyrophosphat 97.8 5.7E-05 1.2E-09 91.1 8.9 115 265-398 415-546 (597)
122 PRK09107 acetolactate synthase 97.8 4.4E-05 9.6E-10 92.0 7.9 114 265-399 430-555 (595)
123 TIGR03457 sulphoacet_xsc sulfo 97.8 5.7E-05 1.2E-09 90.7 8.5 116 265-398 430-557 (579)
124 PRK11869 2-oxoacid ferredoxin 97.7 5.8E-05 1.3E-09 82.7 7.5 113 267-397 62-192 (280)
125 PLN02470 acetolactate synthase 97.7 0.0001 2.2E-09 88.7 10.0 113 265-398 426-557 (585)
126 PRK06965 acetolactate synthase 97.7 7.5E-05 1.6E-09 89.9 8.5 112 266-397 438-561 (587)
127 PRK06466 acetolactate synthase 97.7 6.6E-05 1.4E-09 90.1 7.8 113 266-398 424-548 (574)
128 PRK07449 2-succinyl-5-enolpyru 97.7 4.8E-05 1E-09 91.1 6.2 110 266-397 426-548 (568)
129 TIGR02418 acolac_catab acetola 97.7 6.3E-05 1.4E-09 89.5 6.7 112 266-398 409-530 (539)
130 COG4231 Indolepyruvate ferredo 97.7 0.003 6.6E-08 74.9 20.1 240 606-870 58-340 (640)
131 TIGR03254 oxalate_oxc oxalyl-C 97.6 0.00015 3.3E-09 86.6 9.6 111 265-397 417-537 (554)
132 PRK06276 acetolactate synthase 97.6 8.5E-05 1.8E-09 89.4 7.3 111 266-397 420-542 (586)
133 PRK09259 putative oxalyl-CoA d 97.6 0.0002 4.4E-09 85.9 10.2 110 266-398 425-546 (569)
134 PRK08978 acetolactate synthase 97.6 0.00014 2.9E-09 86.9 8.2 114 265-399 401-526 (548)
135 PLN02573 pyruvate decarboxylas 97.6 0.00013 2.9E-09 87.7 8.1 114 265-397 428-551 (578)
136 PRK08617 acetolactate synthase 97.6 0.00013 2.8E-09 87.1 8.0 113 266-399 415-537 (552)
137 PRK06456 acetolactate synthase 97.6 0.00015 3.2E-09 87.0 8.4 114 265-399 421-546 (572)
138 PRK08979 acetolactate synthase 97.6 0.00016 3.5E-09 86.8 8.2 114 265-398 421-546 (572)
139 PRK08611 pyruvate oxidase; Pro 97.5 0.00014 3.1E-09 87.4 7.7 114 265-399 408-531 (576)
140 PRK06457 pyruvate dehydrogenas 97.5 0.0002 4.4E-09 85.5 8.9 114 265-398 396-519 (549)
141 PRK11866 2-oxoacid ferredoxin 97.5 0.00021 4.6E-09 78.3 7.5 111 268-397 62-191 (279)
142 PRK05858 hypothetical protein; 97.5 0.00019 4E-09 85.7 7.6 112 265-397 407-529 (542)
143 PRK08322 acetolactate synthase 97.5 0.00021 4.4E-09 85.3 7.9 112 266-398 407-528 (547)
144 TIGR03393 indolpyr_decarb indo 97.5 0.00021 4.5E-09 85.2 7.6 112 265-397 404-526 (539)
145 PRK11867 2-oxoglutarate ferred 97.4 0.00032 6.9E-09 77.3 8.1 110 268-396 72-200 (286)
146 TIGR02176 pyruv_ox_red pyruvat 97.4 0.0059 1.3E-07 78.9 19.7 200 613-835 58-330 (1165)
147 cd06586 TPP_enzyme_PYR Pyrimid 97.4 0.0011 2.4E-08 65.1 10.4 115 605-733 34-154 (154)
148 PRK06048 acetolactate synthase 97.4 0.00047 1E-08 82.6 8.9 112 266-398 415-538 (561)
149 PRK07282 acetolactate synthase 97.4 0.00028 6E-09 84.7 6.9 113 265-399 418-542 (566)
150 PRK07789 acetolactate synthase 97.3 0.0004 8.6E-09 84.2 7.7 113 266-398 448-576 (612)
151 TIGR03336 IOR_alpha indolepyru 97.3 0.00059 1.3E-08 82.5 8.6 114 265-396 403-528 (595)
152 TIGR02177 PorB_KorB 2-oxoacid: 97.1 0.00073 1.6E-08 74.5 6.2 111 268-397 56-185 (287)
153 COG0674 PorA Pyruvate:ferredox 97.1 0.033 7.1E-07 63.6 19.7 229 613-861 54-349 (365)
154 PLN02980 2-oxoglutarate decarb 96.9 0.0015 3.2E-08 87.3 8.0 117 263-399 757-890 (1655)
155 KOG1185|consensus 96.8 0.0061 1.3E-07 70.2 10.0 111 271-397 432-559 (571)
156 TIGR03394 indol_phenyl_DC indo 96.6 0.0047 1E-07 73.8 8.5 111 266-397 404-520 (535)
157 PRK13029 2-oxoacid ferredoxin 96.2 0.12 2.6E-06 66.4 17.3 193 651-861 133-379 (1186)
158 PF09364 XFP_N: XFP N-terminal 96.0 0.017 3.7E-07 64.9 7.6 107 267-383 142-250 (379)
159 PRK13030 2-oxoacid ferredoxin 95.8 0.3 6.5E-06 63.2 18.2 233 607-861 75-368 (1159)
160 PRK09193 indolepyruvate ferred 95.5 0.48 1E-05 61.2 18.5 193 651-861 130-376 (1165)
161 COG3961 Pyruvate decarboxylase 94.8 0.055 1.2E-06 63.3 6.6 112 268-397 414-534 (557)
162 COG1013 PorB Pyruvate:ferredox 94.4 0.25 5.5E-06 54.9 10.6 112 268-397 73-203 (294)
163 COG2609 AceE Pyruvate dehydrog 94.3 8.6 0.00019 47.1 23.1 50 289-341 218-267 (887)
164 COG3960 Glyoxylate carboligase 93.3 0.24 5.2E-06 55.0 7.7 124 266-406 420-564 (592)
165 cd03377 TPP_PFOR_PNO Thiamine 92.3 0.46 1E-05 54.1 8.5 95 294-397 153-266 (365)
166 PRK08659 2-oxoglutarate ferred 91.8 0.37 7.9E-06 55.5 7.0 99 303-407 77-179 (376)
167 PF01855 POR_N: Pyruvate flavo 89.2 0.65 1.4E-05 49.9 5.7 116 610-738 40-159 (230)
168 KOG1184|consensus 88.6 0.86 1.9E-05 53.6 6.5 113 268-396 418-537 (561)
169 PF01855 POR_N: Pyruvate flavo 88.5 0.71 1.5E-05 49.6 5.5 94 303-407 65-163 (230)
170 KOG4166|consensus 87.6 0.86 1.9E-05 52.3 5.5 108 270-398 529-647 (675)
171 PRK09627 oorA 2-oxoglutarate-a 87.1 1.1 2.3E-05 51.7 6.1 97 303-407 76-178 (375)
172 cd06586 TPP_enzyme_PYR Pyrimid 86.4 4.1 8.8E-05 39.8 9.1 93 292-395 60-152 (154)
173 PF03894 XFP: D-xylulose 5-pho 83.6 11 0.00023 39.1 10.7 147 554-718 16-176 (179)
174 cd07039 TPP_PYR_POX Pyrimidine 81.4 7.5 0.00016 39.4 8.7 93 292-395 64-156 (164)
175 TIGR03710 OAFO_sf 2-oxoacid:ac 81.4 2.9 6.3E-05 50.7 6.7 97 303-405 266-366 (562)
176 cd07035 TPP_PYR_POX_like Pyrim 81.2 9.8 0.00021 37.5 9.4 92 293-395 61-153 (155)
177 cd07034 TPP_PYR_PFOR_IOR-alpha 79.5 15 0.00032 36.6 10.0 92 294-395 67-158 (160)
178 cd07038 TPP_PYR_PDC_IPDC_like 79.0 6.8 0.00015 39.6 7.5 95 292-395 60-160 (162)
179 TIGR03845 sulfopyru_alph sulfo 78.9 11 0.00023 38.3 8.8 109 612-735 40-156 (157)
180 PRK07119 2-ketoisovalerate fer 78.0 11 0.00024 43.0 9.7 92 305-406 79-178 (352)
181 TIGR02176 pyruv_ox_red pyruvat 77.6 11 0.00025 49.5 10.7 97 294-399 953-1068(1165)
182 PRK09622 porA pyruvate flavodo 73.8 5.9 0.00013 46.2 6.1 91 303-404 85-181 (407)
183 COG3962 Acetolactate synthase 72.2 17 0.00037 42.8 9.0 95 292-397 462-574 (617)
184 TIGR03845 sulfopyru_alph sulfo 71.9 30 0.00066 35.0 10.0 69 322-395 83-152 (157)
185 COG0674 PorA Pyruvate:ferredox 70.5 13 0.00028 42.8 7.8 92 303-401 76-169 (365)
186 cd07034 TPP_PYR_PFOR_IOR-alpha 68.2 42 0.00091 33.3 10.0 114 605-731 41-158 (160)
187 PRK08366 vorA 2-ketoisovalerat 66.7 18 0.0004 42.0 8.0 91 303-401 78-170 (390)
188 PF02776 TPP_enzyme_N: Thiamin 65.5 33 0.00071 34.7 8.8 94 292-395 65-159 (172)
189 COG1165 MenD 2-succinyl-6-hydr 65.2 9.5 0.00021 45.7 5.3 106 273-399 430-547 (566)
190 COG4231 Indolepyruvate ferredo 60.9 29 0.00064 42.3 8.4 95 292-395 445-551 (640)
191 COG0075 Serine-pyruvate aminot 57.5 38 0.00083 39.3 8.4 72 765-840 79-150 (383)
192 cd07037 TPP_PYR_MenD Pyrimidin 55.4 48 0.001 33.7 7.9 95 292-395 61-160 (162)
193 KOG1615|consensus 53.9 42 0.0009 35.6 7.1 49 180-228 90-138 (227)
194 TIGR02720 pyruv_oxi_spxB pyruv 51.1 99 0.0021 37.7 11.0 92 292-396 64-157 (575)
195 PRK08367 porA pyruvate ferredo 50.8 40 0.00088 39.2 7.3 92 303-404 79-175 (394)
196 TIGR03457 sulphoacet_xsc sulfo 49.3 80 0.0017 38.4 9.8 94 292-396 65-158 (579)
197 PF02776 TPP_enzyme_N: Thiamin 48.3 81 0.0018 31.9 8.3 121 605-738 39-166 (172)
198 PRK08978 acetolactate synthase 47.6 93 0.002 37.5 10.0 93 292-395 64-157 (548)
199 PRK06456 acetolactate synthase 47.2 92 0.002 37.8 9.9 91 292-395 69-162 (572)
200 PRK06725 acetolactate synthase 47.2 78 0.0017 38.6 9.3 93 292-395 78-171 (570)
201 PRK07525 sulfoacetaldehyde ace 45.9 94 0.002 37.9 9.7 91 292-395 69-161 (588)
202 TIGR00118 acolac_lg acetolacta 44.7 1.2E+02 0.0026 36.7 10.3 93 292-395 65-158 (558)
203 PRK07979 acetolactate synthase 44.5 91 0.002 37.9 9.3 93 292-395 68-161 (574)
204 PRK08155 acetolactate synthase 44.0 1.1E+02 0.0024 37.1 9.8 94 292-396 77-171 (564)
205 PRK07789 acetolactate synthase 43.6 1E+02 0.0022 37.9 9.6 94 292-396 95-189 (612)
206 PRK06276 acetolactate synthase 43.1 97 0.0021 37.8 9.3 94 292-396 64-158 (586)
207 PLN02470 acetolactate synthase 42.7 99 0.0021 37.7 9.2 94 292-396 77-171 (585)
208 PRK08979 acetolactate synthase 42.3 88 0.0019 38.0 8.7 93 292-395 68-161 (572)
209 PRK06965 acetolactate synthase 42.0 2.2E+02 0.0047 34.8 12.0 90 292-395 85-178 (587)
210 PRK08527 acetolactate synthase 41.7 1.2E+02 0.0026 36.8 9.6 91 292-395 67-160 (563)
211 PRK08611 pyruvate oxidase; Pro 41.5 1.4E+02 0.003 36.4 10.2 93 292-395 69-161 (576)
212 TIGR03254 oxalate_oxc oxalyl-C 41.4 1E+02 0.0023 37.2 9.1 95 292-395 66-161 (554)
213 PRK06466 acetolactate synthase 41.3 1.2E+02 0.0026 36.9 9.6 93 292-395 68-161 (574)
214 PRK11269 glyoxylate carboligas 40.2 96 0.0021 37.9 8.6 94 292-396 69-163 (591)
215 PRK07064 hypothetical protein; 40.1 1.4E+02 0.0031 35.8 9.9 92 292-396 67-164 (544)
216 PRK06112 acetolactate synthase 39.8 1E+02 0.0022 37.5 8.7 94 292-396 75-169 (578)
217 PRK07418 acetolactate synthase 38.9 1.3E+02 0.0028 37.0 9.4 94 292-396 86-180 (616)
218 PRK05647 purN phosphoribosylgl 38.6 1E+02 0.0022 32.4 7.5 114 293-431 3-117 (200)
219 PRK09107 acetolactate synthase 37.7 1.2E+02 0.0026 37.2 8.9 91 292-395 75-168 (595)
220 PF09851 SHOCT: Short C-termin 37.5 44 0.00096 24.7 3.2 27 426-453 4-30 (31)
221 TIGR03297 Ppyr-DeCO2ase phosph 37.1 1.2E+02 0.0025 35.1 8.1 112 613-736 33-155 (361)
222 PRK12474 hypothetical protein; 37.0 1.4E+02 0.0031 35.7 9.3 93 292-395 69-162 (518)
223 TIGR01504 glyox_carbo_lig glyo 36.5 1.1E+02 0.0023 37.5 8.2 94 292-396 68-162 (588)
224 PRK09259 putative oxalyl-CoA d 36.3 1.6E+02 0.0036 35.7 9.7 96 292-396 73-169 (569)
225 cd07035 TPP_PYR_POX_like Pyrim 35.5 2.8E+02 0.006 27.2 9.6 113 606-732 35-154 (155)
226 PRK08199 thiamine pyrophosphat 34.9 1.7E+02 0.0037 35.4 9.6 93 292-395 72-165 (557)
227 PRK08569 rpl18p 50S ribosomal 34.7 3.4E+02 0.0074 28.7 10.3 94 365-460 74-192 (193)
228 PRK06882 acetolactate synthase 34.3 1.8E+02 0.0039 35.3 9.7 94 292-396 68-162 (574)
229 COG3737 Uncharacterized conser 34.0 39 0.00084 33.0 3.0 65 723-797 33-101 (127)
230 PRK06048 acetolactate synthase 33.7 2E+02 0.0044 34.8 9.9 93 292-395 71-164 (561)
231 CHL00099 ilvB acetohydroxyacid 33.5 1.9E+02 0.004 35.4 9.6 92 292-396 77-171 (585)
232 PRK07282 acetolactate synthase 32.0 2.3E+02 0.005 34.4 10.0 93 292-395 74-167 (566)
233 KOG4166|consensus 30.6 1.8E+02 0.004 34.3 8.1 153 215-395 89-248 (675)
234 PRK06457 pyruvate dehydrogenas 30.3 2.9E+02 0.0062 33.4 10.4 93 292-396 65-158 (549)
235 COG2144 Selenophosphate synthe 28.5 1E+02 0.0023 34.5 5.5 52 350-409 83-137 (324)
236 COG1303 Uncharacterized protei 28.1 1E+02 0.0022 31.7 4.9 53 341-396 13-65 (179)
237 PRK12571 1-deoxy-D-xylulose-5- 28.0 1.3E+02 0.0028 37.4 7.0 89 294-395 386-476 (641)
238 PRK07710 acetolactate synthase 26.6 3E+02 0.0066 33.4 9.8 93 292-396 79-173 (571)
239 PRK08322 acetolactate synthase 26.2 2.7E+02 0.006 33.4 9.3 93 292-396 64-158 (547)
240 PRK13010 purU formyltetrahydro 26.1 1.6E+02 0.0034 33.0 6.6 112 291-431 93-206 (289)
241 KOG2733|consensus 25.6 61 0.0013 37.4 3.2 85 293-403 5-99 (423)
242 PRK13030 2-oxoacid ferredoxin 25.4 1.2E+02 0.0026 40.2 6.3 114 266-395 469-600 (1159)
243 PRK05858 hypothetical protein; 25.3 3.3E+02 0.0071 32.9 9.7 93 292-395 68-161 (542)
244 TIGR00655 PurU formyltetrahydr 25.0 1.9E+02 0.0041 32.2 6.9 112 290-431 83-197 (280)
245 PRK08617 acetolactate synthase 24.8 3.6E+02 0.0078 32.5 9.9 94 292-396 68-162 (552)
246 cd02012 TPP_TK Thiamine pyroph 24.2 3.1E+02 0.0067 29.7 8.4 108 618-731 110-224 (255)
247 PRK09193 indolepyruvate ferred 23.8 2.2E+02 0.0048 37.8 8.2 94 295-395 502-614 (1165)
248 cd07033 TPP_PYR_DXS_TK_like Py 23.4 2.6E+02 0.0057 27.9 7.1 89 294-395 64-154 (156)
249 TIGR02418 acolac_catab acetola 23.1 4.3E+02 0.0094 31.8 10.1 94 292-396 62-156 (539)
250 PRK07524 hypothetical protein; 22.6 4E+02 0.0087 32.0 9.7 95 292-395 65-161 (535)
251 PRK09124 pyruvate dehydrogenas 22.3 4.1E+02 0.0089 32.3 9.8 91 292-395 67-159 (574)
252 cd02014 TPP_POX Thiamine pyrop 21.5 4E+02 0.0087 27.0 8.1 102 618-729 56-168 (178)
253 PRK07586 hypothetical protein; 21.3 4.3E+02 0.0094 31.5 9.6 94 292-396 65-159 (514)
254 PLN02573 pyruvate decarboxylas 20.9 2.8E+02 0.0062 33.8 8.0 95 292-395 79-179 (578)
255 COG0028 IlvB Thiamine pyrophos 20.6 4.6E+02 0.0099 32.1 9.6 94 291-395 64-158 (550)
256 PF13344 Hydrolase_6: Haloacid 20.5 38 0.00082 31.5 0.4 74 297-392 9-84 (101)
No 1
>KOG0450|consensus
Probab=100.00 E-value=2.5e-243 Score=2009.40 Aligned_cols=853 Identities=45% Similarity=0.752 Sum_probs=809.1
Q ss_pred hhhhhHHHHHHHHHHHHhcccccCccCCCCCCccc------cccccCcccccCCCCccccccccccC--ccc-cCCcccC
Q psy9579 24 LENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKT------INLEYKLNIKFYDFNESDMDSVINVN--NIF-FGVKKTT 94 (887)
Q Consensus 24 ~~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~------~~~~~~L~~~~~gl~~~dl~~~~~~~--~~~-~~~~~~t 94 (887)
......++|+.||+||+.+||..|+|||||+.... .++|++|++.+|||+|.|||++|.+. .|. -+.+.+|
T Consensus 123 ~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~~~~~l~~Ygf~E~DLDref~L~~t~Fi~~~~~~lt 202 (1017)
T KOG0450|consen 123 KTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIPEELTLAFYGFTEADLDREFHLPTTTFIGGGESSLT 202 (1017)
T ss_pred ccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCCCCChhhhhhhcCCchhhccceeccCCcccccCCCcccc
Confidence 34567899999999999999999999999984321 12456799999999999999999773 222 2467899
Q ss_pred HHHHHHHHHHHhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q psy9579 95 LRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLE 174 (887)
Q Consensus 95 l~ei~~~L~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~e 174 (887)
||||+++|+++||++||+|||||.|.++++||++|+|++. ...++.|+++-||.+|.++..||+||++||+..||||+|
T Consensus 203 LreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~-~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFGLE 281 (1017)
T KOG0450|consen 203 LREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGLE 281 (1017)
T ss_pred HHHHHHHHHHHhhccceeEEEeeCcHHHhHHHHHhccCCC-ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccccc
Confidence 9999999999999999999999999999999999999984 678999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCC--C
Q psy9579 175 GSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINT--P 252 (887)
Q Consensus 175 G~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~--~ 252 (887)
|+|+++||+++||++++.+|++++|+||+||||+|+|+|+..+|+++||+||.|...-..|+||||||+|.+.++.. .
T Consensus 282 GcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~DeGSGDVKYHLG~~~~R~~r~s 361 (1017)
T KOG0450|consen 282 GCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADEGSGDVKYHLGMYYERPNRVS 361 (1017)
T ss_pred chhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcCCCCceeeeeccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999966555799999999999988765 5
Q ss_pred CceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEE
Q psy9579 253 GGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIII 332 (887)
Q Consensus 253 gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~ 332 (887)
|+.++|+++.||||||+++||++|++||.|++.+|..+++++.|++||||||+|||+|||||+++.||+|.++||||||+
T Consensus 362 ~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVv 441 (1017)
T KOG0450|consen 362 GKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVV 441 (1017)
T ss_pred CceeEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEE
Confidence 77899999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred eCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCC
Q psy9579 333 NNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLT 412 (887)
Q Consensus 333 NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~t 412 (887)
||||||||+|..+||++||||+||+.++||||||+||||||..+++.|.|+|.+|++||+||++|||++||||.|+|+||
T Consensus 442 NNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FT 521 (1017)
T KOG0450|consen 442 NNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFT 521 (1017)
T ss_pred ccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCC----C
Q psy9579 413 QPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGY----I 488 (887)
Q Consensus 413 qp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~----~ 488 (887)
||.||+.|+++++.++.|.++|+++|.++++|+++..+++...+++|++.++.+.+....+|++..|.+++.+.. .
T Consensus 522 QPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~ 601 (1017)
T KOG0450|consen 522 QPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKIL 601 (1017)
T ss_pred chHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccc
Confidence 999999999999999999999999999999999999999999999999999999876544569999999987532 2
Q ss_pred CCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCc
Q psy9579 489 DNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGT 568 (887)
Q Consensus 489 ~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGt 568 (887)
..++||+..+.|+.||..+.++|++|++|..|+|+|+.|.+|+++ +.||||++|+|||||||.||.+||||||||+|||
T Consensus 602 ~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~EG~hVRlSGQDVERGT 680 (1017)
T KOG0450|consen 602 PCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGT 680 (1017)
T ss_pred cCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHhcCceEEeecccccccc
Confidence 245799999999999999999999999999999999999999998 7999999999999999999999999999999999
Q ss_pred ccccceeeeccccccccccCCC-cEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccch
Q psy9579 569 FSHRHAILYNQDYQYSEKETDI-STYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGA 647 (887)
Q Consensus 569 FshRHav~~dq~~~~~~~~~~~-~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~A 647 (887)
|||||+|||||+ ++ .+|+||++|+++|+++.|.||.|||+||||||+||||++|+.|++||||||||+|+|
T Consensus 681 FShRH~VLHDQ~--------~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGDFaNtA 752 (1017)
T KOG0450|consen 681 FSHRHHVLHDQE--------VDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFANTA 752 (1017)
T ss_pred cccchhhhcccc--------cCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceEEeehhhccccccc
Confidence 999999999999 66 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCC------------------CcEEEcCCCHh
Q psy9579 648 QVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANN------------------NIQIVQPTSAS 709 (887)
Q Consensus 648 q~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~------------------nl~V~~pstpa 709 (887)
|+||||||++|++||-+++||||+|||||+|+||||||+|+|||||||+++ ||+||||||||
T Consensus 753 Q~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPa 832 (1017)
T KOG0450|consen 753 QCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPA 832 (1017)
T ss_pred hhhHHhHhccchhhhhhhcCeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCCeEEEecCChH
Confidence 999999999999999999999999999999999999999999999999975 99999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCc-ceeecccccc-ccCCCCceEEEEEechHHHHHHHHH
Q psy9579 710 QIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGK-FNKIINEIDD-IIDPKKIKRIIACSGKIYYDLFNFR 787 (887)
Q Consensus 710 ~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~-f~~~i~~~~~-~~~~~~v~r~i~~~G~~~~~l~~~~ 787 (887)
||||+|||||.++||||||+|+||+|||||.+.|+++||.+|+ |+.+|++... +.++++|+|+|+|||||||+|.++|
T Consensus 833 NyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~R 912 (1017)
T KOG0450|consen 833 NYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKER 912 (1017)
T ss_pred HHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEEEEecceEehhhhHHH
Confidence 9999999999999999999999999999999999999999985 9999988543 3567899999999999999999999
Q ss_pred HHcC-CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc-CCcEEEecCCCCCCC
Q psy9579 788 KKKN-KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS-TQKLIYVGRSCSASP 865 (887)
Q Consensus 788 ~~~~-~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~-~~~~~~~gr~~~~~~ 865 (887)
++.+ ..+|||+|+|||+|||++.|.++++|||| +|+|||||||+|||+|.||.|||...+.. +.+++|+||.++++|
T Consensus 913 k~~~~~~~vAi~RvEQl~PFp~dli~~e~~~Ypn-aEivWcQEE~~NmG~w~Yv~PRl~T~l~~~~r~v~Y~GR~Psaa~ 991 (1017)
T KOG0450|consen 913 KEVGLEGDVAITRVEQLSPFPFDLIQQELNKYPN-AEIVWCQEEHKNMGAWDYVEPRLRTALKRLARPVKYAGRLPSAAP 991 (1017)
T ss_pred HhcCcccceeEEEeeccCCCcHHHHHHHHHhCCC-ceeeehhhhhcccCchhhcchHHHHHHHhhCCcceecccCCcccc
Confidence 9887 57899999999999999999999999999 69999999999999999999999998774 679999999999999
Q ss_pred CCCchhhHHHHHHHHHHHhhcC
Q psy9579 866 ASGYYSKHCKEQITLLNNAFLK 887 (887)
Q Consensus 866 a~g~~~~h~~~~~~i~~~a~~~ 887 (887)
|+|....|.+||++++++||..
T Consensus 992 AtGnk~~Hl~eq~~~l~~a~~~ 1013 (1017)
T KOG0450|consen 992 ATGNKQTHLAEQKAFLNKAFQL 1013 (1017)
T ss_pred cccchhHHHHHHHHHHHHHhcc
Confidence 9999999999999999999963
No 2
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.2e-239 Score=2053.50 Aligned_cols=845 Identities=45% Similarity=0.781 Sum_probs=799.4
Q ss_pred chhhhhHHHHHHHHHHHHhcccccCccCCCCCCccccccccCcccccCCCCccccccccccCccccCCcccCHHHHHHHH
Q psy9579 23 ILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFL 102 (887)
Q Consensus 23 ~~~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~tl~ei~~~L 102 (887)
.....|+.+|++||+|||.+|||.|++|||++..+. + |+||+.+||||-+|||++|.+|+|. |+..++||||+..|
T Consensus 380 ~~~i~K~arv~elI~ayR~rGHLmAd~dPL~~~~r~--h-pdLd~~~hGLTlWDLdR~f~~ggf~-g~~~m~LrdiL~~L 455 (1228)
T PRK12270 380 EDEVDKNARVMELIHAYRVRGHLMADTDPLEYRQRS--H-PDLDVLTHGLTLWDLDREFPVGGFG-GKERMKLRDILGVL 455 (1228)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhccCCcccccccC--C-CCCCccccCCCHHhcCceeecCCcC-CcccccHHHHHHHH
Confidence 356788999999999999999999999999985433 6 9999999999999999999999886 88899999999999
Q ss_pred HHHhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHH
Q psy9579 103 KNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILS 182 (887)
Q Consensus 103 ~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vg 182 (887)
+++||++||+|||||.|++||.|||+|+|.+ ..+++.+++++||++|..++.||.||++||.+|||||+||.|++||.
T Consensus 456 RdsYcr~vg~EymhI~dpeqr~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFslEG~Es~ipl 533 (1228)
T PRK12270 456 RDSYCRTVGIEYMHIQDPEQRRWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFSLEGGESLIPL 533 (1228)
T ss_pred HHHHhhhheeeeeecCCHHHHHHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeeeecchhhHHHH
Confidence 9999999999999999999999999999975 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCC--CCCCCcccccccccccCC-CCceeEEE
Q psy9579 183 LNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSEN--LLSGDVKYHQGFSSNINT-PGGVIHLS 259 (887)
Q Consensus 183 l~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~--~~~GDvkyHlG~s~~~~~-~gg~~hl~ 259 (887)
++++++.|+..+.+++++||+||||+|+|+|+.|||+.+||+||.|+.+.. .|+||||||+|..++... .|..+.++
T Consensus 534 ld~~~~~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~ 613 (1228)
T PRK12270 534 LDAVLDQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVS 613 (1228)
T ss_pred HHHHHHHHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEE
Confidence 999999999999999999999999999999999999999999999987543 589999999999987766 57789999
Q ss_pred eecCCCcccccccccchhHHHHHhhccCC-CCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCcee
Q psy9579 260 LAFNPSHLEIINPVVEGSAKARMERRDDK-FGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGF 338 (887)
Q Consensus 260 l~~npShle~v~Pva~G~A~A~q~~~~~~-~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ 338 (887)
|+.||||||+|+||..|++||+|+..+.. .+-.+++|++||||||+|||+|+||||||+|.||.+|||||||+||||||
T Consensus 614 laaNPSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGf 693 (1228)
T PRK12270 614 LAANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGF 693 (1228)
T ss_pred EecCchhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCccc
Confidence 99999999999999999999999987622 23589999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhH
Q psy9579 339 TTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYK 418 (887)
Q Consensus 339 ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr 418 (887)
||++.++||+.||+|+||++++|+||||||||+||++++++|++||++|+||||||++|||++||||+|||++|||.||+
T Consensus 694 tT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~ 773 (1228)
T PRK12270 694 TTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYD 773 (1228)
T ss_pred ccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHH
Q psy9579 419 KIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLE 498 (887)
Q Consensus 419 ~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~ 498 (887)
.|..++++.++|.+.|+.+|.+|++|++++.++++++|+.+|++.++....+... .... .. ........+|.++.+
T Consensus 774 ~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~-~~~~-~~--~~~~~~~~~Tav~~~ 849 (1228)
T PRK12270 774 LIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEP-PESV-ES--DQGPPAGVDTAVSAE 849 (1228)
T ss_pred hhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCc-cc--cccCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999999999999998755322110 0000 00 011223468999999
Q ss_pred HHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeec
Q psy9579 499 KLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYN 578 (887)
Q Consensus 499 ~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~d 578 (887)
.|+.|+++..++|++|++||+|++++++|.+|..+ ++||||++|+|||||||.+|..|||+|||+.||||+||||||||
T Consensus 850 ~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~-g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D 928 (1228)
T PRK12270 850 VLERIGDAHVNLPEGFTVHPKLKPLLEKRREMARE-GGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLID 928 (1228)
T ss_pred HHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEec
Confidence 99999999999999999999999999999999986 68999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhH
Q psy9579 579 QDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSS 658 (887)
Q Consensus 579 q~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~ 658 (887)
.+ ||..|.||++|.+++|+|.||||+|||+|.||||||||+.+|.+|++||||||||+||||.|||+|||||
T Consensus 929 ~~--------tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~ 1000 (1228)
T PRK12270 929 RE--------TGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSG 1000 (1228)
T ss_pred CC--------CCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHHhhh
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEcccccccc
Q psy9579 659 EEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRK 738 (887)
Q Consensus 659 ~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~ 738 (887)
|+||++.|++||+||||||||||+|||+|||||||||+++||.|++|||||+||||||||+....++|||||+||+|||+
T Consensus 1001 e~KWgQ~S~vvlLLPHGyEGQGPdHSSaRiERfLqlcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~ 1080 (1228)
T PRK12270 1001 EAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRL 1080 (1228)
T ss_pred HhhhccccceEEEccCCcCCCCCCcchHHHHHHHHhhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHHhc
Q psy9579 739 KEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKF 818 (887)
Q Consensus 739 ~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~ 818 (887)
|.++|+++||+.|+|++||+|+... ++++|+|||+||||+||||.++|++.+..+++|||||||||||.+.|.+.|.+|
T Consensus 1081 KaA~S~vedFT~g~F~pVi~D~~~~-~~~~V~RVlLcSGKvYYdL~a~R~k~~~~d~AIvRvEQLyP~p~~~l~~~l~~y 1159 (1228)
T PRK12270 1081 KAAVSDVEDFTEGKFRPVIDDPTVD-DGAKVRRVLLCSGKLYYDLAARREKDGRDDTAIVRVEQLYPLPRAELREALARY 1159 (1228)
T ss_pred hhhcCCHHHhccCCceecCCCCCCC-CccceeEEEEEcchhHHHHHHHHHhcCCCceEEEEhhhhCCCCHHHHHHHHHhC
Confidence 9999999999999999999998854 566899999999999999999999888889999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhhcC
Q psy9579 819 RYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK 887 (887)
Q Consensus 819 ~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~~~ 887 (887)
||+.+++||||||.|||+|.|+...|.+.++...++|||+|++++|||+|+.+.|..||+.||++||..
T Consensus 1160 pna~e~~wvQeEP~NqGaw~f~~~~l~~~l~~~~~lr~VsRpasasPAtGs~kvH~~EQ~~Ll~~Af~~ 1228 (1228)
T PRK12270 1160 PNATEVVWVQEEPANQGAWPFMALNLPELLPDGRRLRRVSRPASASPATGSAKVHAVEQQELLDEAFAR 1228 (1228)
T ss_pred CCcceeEEeccCcccCCCchhhhhhhHhhccCCCCceEecCCcccCCCccchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988767899999999999999999999999999999999963
No 3
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=4.7e-230 Score=2037.47 Aligned_cols=844 Identities=50% Similarity=0.873 Sum_probs=789.0
Q ss_pred hHHHHHHHHHHHHhcccccCccCCCCCCccccccccCcccccCCCCccccccccccCccccCCc---ccCHHHHHHHHHH
Q psy9579 28 KKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVK---KTTLRNLLKFLKN 104 (887)
Q Consensus 28 ~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~---~~tl~ei~~~L~~ 104 (887)
+++++.+||++||.+||+.|+||||++..+. .. ++|++.+|||+++||++.|.++.+.++.. .+||+||+++|++
T Consensus 75 ~~~~v~~LI~ayR~~GHl~A~lDPL~~~~~~-~~-~~l~~~~~gl~~~dl~~~~~~~~~~~~~~~~~~~~l~eii~~L~~ 152 (929)
T TIGR00239 75 SQVKVLQLIRAYRFRGHLHANLDPLGLKQQD-KV-PELDLSFYGLTEADLQETFNIGSFVSGKDATMKLSNLELLQALKQ 152 (929)
T ss_pred HHHHHHHHHHHHHHhcchheecCCCCCCCCC-CC-CccChhhcCCChHHhCceeeecccccCccccccCCHHHHHHHHHH
Confidence 5789999999999999999999999974433 34 78999999999999999998876533433 3599999999999
Q ss_pred HhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHHHH
Q psy9579 105 TYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLN 184 (887)
Q Consensus 105 ~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vgl~ 184 (887)
+|||+||+|||||.|+++|.||++|||+.. ...+++++++++|++|++++.||+||++||+++||||+||+|+++|+++
T Consensus 153 ~YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~ 231 (929)
T TIGR00239 153 TYCGSIGAEYMHITSTEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPMLK 231 (929)
T ss_pred HhcCcceeeeecCCCHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeecccHHHHHHHHH
Confidence 999999999999999999999999999765 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCC--CCCCcccccc-cccccCCCCceeEEEee
Q psy9579 185 EIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENL--LSGDVKYHQG-FSSNINTPGGVIHLSLA 261 (887)
Q Consensus 185 ~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~--~~GDvkyHlG-~s~~~~~~gg~~hl~l~ 261 (887)
+||+.|+.+|++|+++||+||||+|+|+|++|+|+++||+||+|+..+.. ++||||||+| ++++....|+.+|++|+
T Consensus 232 ~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~ 311 (929)
T TIGR00239 232 EIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALA 311 (929)
T ss_pred HHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeec
Confidence 99999999999999999999999999999999999999999999876532 6899999999 78777778888999999
Q ss_pred cCCCcccccccccchhHHHHHhhccC-CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceecc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDD-KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTT 340 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~-~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST 340 (887)
+||||||+|+|||+|+|||+|+++++ ..+++.|+|++|||||++|||+||||||||++.+|.+||+||||+||||||||
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT 391 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTT 391 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEE
Confidence 99999999999999999999999764 45568999999999998899999999999999777777899999999999999
Q ss_pred CCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHH
Q psy9579 341 SPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKI 420 (887)
Q Consensus 341 ~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i 420 (887)
++++++++.||+|+|++||+|++|||||||+||+.|+++|++|||+|+||+|||++|||++|||++|+|++|||.||+.+
T Consensus 392 ~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i 471 (929)
T TIGR00239 392 NPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKI 471 (929)
T ss_pred cHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHH
Q psy9579 421 FKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKL 500 (887)
Q Consensus 421 ~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l 500 (887)
++++||+.+|+++|+++|++|++++++|+++++++++++++.++..+++.+. ...|.++....+....+|+++.+.|
T Consensus 472 ~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~t~v~~~~l 548 (929)
T TIGR00239 472 KKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA---SFTWSPELNHEWDEEYPNKVEMKRL 548 (929)
T ss_pred HhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcccc---ccccccccccccccCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999876543211 2257665433232345799999999
Q ss_pred HHHHHHhccCCCCCcchhHHHHHHHHH-HhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeecc
Q psy9579 501 KFLSKKITNIPKGFKLHKLVKKILKDR-VEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQ 579 (887)
Q Consensus 501 ~~i~~~~~~~P~~f~~h~~v~~~~~~R-~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq 579 (887)
+.|+.+++++|++|++||+|+|+++.| ++|.++++.+||++||++||+++|.+|++|||+||||+||||||||||||||
T Consensus 549 ~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq 628 (929)
T TIGR00239 549 QELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQ 628 (929)
T ss_pred HHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCccccccccccccc
Confidence 999999999999999999999999999 8888877779999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHH
Q psy9579 580 DYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSE 659 (887)
Q Consensus 580 ~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~ 659 (887)
+ +|++|+||++|.++||++||+||||||+||+|||||||+.|+++|||||+|||||+||||++|||||++++
T Consensus 629 ~--------~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~ 700 (929)
T TIGR00239 629 S--------NGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGE 700 (929)
T ss_pred c--------cCceeecccchhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccC
Q psy9579 660 EKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKK 739 (887)
Q Consensus 660 ~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~ 739 (887)
+||+++||||||+||||+||||+|||+|+|||||||++|||+||+||||+|||||||||+.++++|||||||||+|||++
T Consensus 701 ~K~~~~sglv~~~p~G~~g~g~~hsS~~~E~~lql~~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~ 780 (929)
T TIGR00239 701 QKWGQMSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHP 780 (929)
T ss_pred HHhcCccCeEEEecCcCCCCCchhhccCHHHHHHHhCCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred CCCCccccCCCCcceeecccccc---ccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHH
Q psy9579 740 EASSTLMDLATGKFNKIINEIDD---IIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILK 816 (887)
Q Consensus 740 ~~~s~~~d~~~g~f~~~i~~~~~---~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~ 816 (887)
.++|+++||++|.|++||++... ...+++|+|||+|||||||+|++++.+.+.++|+|||||||||||+++|.++|+
T Consensus 781 ~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg~v~~~l~~~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~ 860 (929)
T TIGR00239 781 LAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLVLCSGKVYYDLHEQRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQ 860 (929)
T ss_pred cccCccccCCCCCcccccccccccccccCccCCcEEEEECchHHHHHHHHHHhcCCCCEEEEEeeeeCCCCHHHHHHHHH
Confidence 99999999999999999976421 114568999999999999999998776666899999999999999999999999
Q ss_pred hcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhh
Q psy9579 817 KFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885 (887)
Q Consensus 817 k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~ 885 (887)
||++++++|||||||+|||+|.||.+||.+.+....+++|+||+++||||+|+.+.|++||++||++||
T Consensus 861 k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~~~~~l~y~gR~~~aspA~G~~~~H~~eq~~li~~a~ 929 (929)
T TIGR00239 861 QYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIPEGVSVRYAGRPASASPAVGYMSLHQKQQQDLLNDAL 929 (929)
T ss_pred hcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhccCCceEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999886556899999999999999999999999999999997
No 4
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.8e-229 Score=2042.18 Aligned_cols=843 Identities=58% Similarity=0.974 Sum_probs=796.1
Q ss_pred hHHHHHHHHHHHHhcccccCccCCCCCCccccccccCcccccCCCCccccccccccCccccCCcccCHHHHHHHHHHHhc
Q psy9579 28 KKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYT 107 (887)
Q Consensus 28 ~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~tl~ei~~~L~~~Yc 107 (887)
+++++.+||++||.+||+.|+||||++..+. .. ++|+|.+|||+++||++.|.++.+..+...+||+||+++|+++||
T Consensus 79 ~~~~v~~Li~ayR~~GHl~A~lDPL~~~~~~-~~-~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~~l~eii~~L~~~Yc 156 (924)
T PRK09404 79 PQVKVLQLINAYRFRGHLAANLDPLGLWKRP-DV-PELDPAFYGLTEADLDRTFNTGSLALGKETATLREIIEALKKTYC 156 (924)
T ss_pred HHHHHHHHHHHHHHhCchheecCCCCCccCC-CC-ccCChhhcCCChHHcCCccccCccccCCCCCcHHHHHHHHHHHhc
Confidence 5789999999999999999999999974433 34 889999999999999999988655335556899999999999999
Q ss_pred CCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHHHHHHH
Q psy9579 108 SNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEII 187 (887)
Q Consensus 108 g~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vgl~~~i 187 (887)
|+||+|||||.|+++|.||+++||+... .+++++++++|++|+++|.||+||+++|.++||||++||||+++|+++++
T Consensus 157 g~ig~E~~hi~~~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li 234 (924)
T PRK09404 157 GSIGVEYMHISDPEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEII 234 (924)
T ss_pred ccHhheeccCCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHH
Confidence 9999999999999999999999997643 89999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCC--CCCCCCCCcccccccccccCCCCceeEEEeecCCC
Q psy9579 188 QHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKN--SENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPS 265 (887)
Q Consensus 188 ~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~--~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npS 265 (887)
+.|++++++|+++||+||||+|+|+|++|+|+.+||+||+|+. .+..++||||||+|++.++.++||+||+++++|||
T Consensus 235 ~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npS 314 (924)
T PRK09404 235 RRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPS 314 (924)
T ss_pred HHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCcc
Confidence 9999999999999999999999999999999999999999987 33346899999999998877899999999999999
Q ss_pred cccccccccchhHHHHHhhccC-CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDD-KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPND 344 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~-~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~ 344 (887)
|||+|+|||+|+|||+|+++++ ..+++.|+|++|||||++|||+||||||||++.+|.++||||||+||||||||++++
T Consensus 315 hleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~ 394 (924)
T PRK09404 315 HLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPD 394 (924)
T ss_pred ccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHH
Confidence 9999999999999999999875 455669999999999998999999999999996666669999999999999999999
Q ss_pred cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCC
Q psy9579 345 LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHP 424 (887)
Q Consensus 345 ~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~ 424 (887)
++++.||+|+|++||+|++|||||||+||+.|+++|++|||+|+||+|||++|||++|||++|+|+||||.+|+.+++++
T Consensus 395 ~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~ 474 (924)
T PRK09404 395 DRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHP 474 (924)
T ss_pred hccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHH
Q psy9579 425 GIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLS 504 (887)
Q Consensus 425 dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~ 504 (887)
||+.+|+++|+++|++|++++++|+++++++|+++++.|++..+. .++...|.++..+......+|+++.+.|+.++
T Consensus 475 dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~ 551 (924)
T PRK09404 475 TTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA---DWLAGDWSPYLGHEWDDPVDTGVPLERLKELA 551 (924)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccccccccccccccccccCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999976322 22556787654443334568999999999999
Q ss_pred HHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccc
Q psy9579 505 KKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYS 584 (887)
Q Consensus 505 ~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~ 584 (887)
.+++++|++|++||+|+|++++|++|+.++..||||+||+|||+|+|.+|++|||+||||+||||||||||||||+
T Consensus 552 ~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~---- 627 (924)
T PRK09404 552 EKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQK---- 627 (924)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccC----
Confidence 9999999999999999999999999998878899999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcC
Q psy9579 585 EKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGR 664 (887)
Q Consensus 585 ~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~ 664 (887)
+|++|+||++|.++||++||+||||||+||+|||||||+.|+++|||||+|||||+|+||++|||||+++++||++
T Consensus 628 ----~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~ 703 (924)
T PRK09404 628 ----TGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGR 703 (924)
T ss_pred ----CCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCc
Q psy9579 665 ISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASST 744 (887)
Q Consensus 665 ~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~ 744 (887)
+||||||+||||+|+||+|||+|+|||||||++|||+||+||||+|||||||+|+.+++||||||||||+|||++.++|+
T Consensus 704 ~sglv~~~p~G~~g~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~ 783 (924)
T PRK09404 704 LSGLVMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSS 783 (924)
T ss_pred ccCeEEEecCcCCCCChhhhccCHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred cccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeE
Q psy9579 745 LMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKL 824 (887)
Q Consensus 745 ~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~ 824 (887)
++||++|.|+++|+++. .+++++|+|||||||||||++++++++++.++|+|||||||+|||.++|.++|+||+++.++
T Consensus 784 ~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~ 862 (924)
T PRK09404 784 LEELAEGSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRGIDDVAIVRIEQLYPFPHEELAAELAKYPNAKEV 862 (924)
T ss_pred HHHcCCCCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeE
Confidence 99999999999999976 45788999999999999999999998887779999999999999999999999999998899
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhhc
Q psy9579 825 IWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFL 886 (887)
Q Consensus 825 v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~~ 886 (887)
|||||||+|||+|.||.++|.+.+....+++|+||+++||||+|+.+.|++||++||++||+
T Consensus 863 v~vqEe~~n~G~~~~~~~~~~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~~i~~a~~ 924 (924)
T PRK09404 863 VWCQEEPKNQGAWYFIQHHLEEVLPEGQKLRYAGRPASASPAVGYMSLHKKQQEALVEDALG 924 (924)
T ss_pred EEEeeCCCCCCcHHHHHHHHHHHhccCCeeEEECCCCcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998865568999999999999999999999999999999985
No 5
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.5e-228 Score=1976.08 Aligned_cols=860 Identities=54% Similarity=0.927 Sum_probs=819.3
Q ss_pred chHHHhhhhhccccchhhhhHHHHHHHHHHHHhcccccCccCCCCCCccccccccCcccccCCCCccccccccccCcccc
Q psy9579 9 TPINFKNLNKEKINILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFF 88 (887)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~ 88 (887)
++++|..++++...+....++.++++||+|||.+||+.|+||||++ +++ .. ++|++++||||++||++.|.++....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~ayR~~Ghl~a~ldPL~~-~~~-~~-~~l~~~~~glt~~d~~~~~~~~~~~~ 123 (906)
T COG0567 47 VRESFRRLAKKGNDPDATLKSVKVLRLINAYRSRGHLHANLDPLGL-KRP-DV-PELDPEFHGLTEADLDETFNIGDGFL 123 (906)
T ss_pred hhhhhhhhcccccchhhhHHHHHHHHHHHHHHHhchhhhcCCcccC-CCC-Cc-cccCHhhcCCCHHHHhcccccccccc
Confidence 5677777777744366777899999999999999999999999996 434 34 89999999999999999998544444
Q ss_pred CCcccCHHHHHHHHHHHhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9579 89 GVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQ 168 (887)
Q Consensus 89 ~~~~~tl~ei~~~L~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~ 168 (887)
|+..+||+||++.|+++|||+||+|||||.|+++|.||++|||+ ..+.++.|+++.+|++|..++.||+||++||+++
T Consensus 124 ~~~~~~l~e~~~~l~~~Ycgsig~E~~hi~~~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~ 201 (906)
T COG0567 124 GKETMTLRELIEILKKTYCGSIGVEYMHISDPEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGA 201 (906)
T ss_pred ccccccHHHHHHHHHHHhccceeeeeeccCCHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 88899999999999999999999999999999999999999999 4689999999999999999999999999999999
Q ss_pred CccccCCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccc
Q psy9579 169 KRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSN 248 (887)
Q Consensus 169 krfg~eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~ 248 (887)
||||+||+||++|+++++|++|...|++++|+||+||||+|+|+|++|||++.||.||.|+...+..+||||||+|++++
T Consensus 202 KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~ 281 (906)
T COG0567 202 KRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSD 281 (906)
T ss_pred ccccccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988766669999999999999
Q ss_pred cCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEE
Q psy9579 249 INTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTI 328 (887)
Q Consensus 249 ~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvI 328 (887)
+...++.+|++|++||||||+|+||+.|.+||+|.+..+...+++++|++|||+|++|||+|+|+|||+.++||+++|+|
T Consensus 282 ~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGti 361 (906)
T COG0567 282 RQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTW 361 (906)
T ss_pred cccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeE
Confidence 98888899999999999999999999999999999998877779999999999999999999999999999999999999
Q ss_pred EEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCC
Q psy9579 329 HIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDT 408 (887)
Q Consensus 329 fiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~Dd 408 (887)
|||+|||+||||.|.++||++||||+||++++|++|||||||+||..+++.|++||++|++||+||++|||++||||+|+
T Consensus 362 HiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~De 441 (906)
T COG0567 362 HIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDE 441 (906)
T ss_pred EEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCC
Q psy9579 409 PSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYI 488 (887)
Q Consensus 409 P~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~ 488 (887)
|++|||.||+.|++|+.+.+.|.++|+++|++|+++++.+.+++++.++..+...+...+. +++...|.++.... .
T Consensus 442 Ps~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~ 517 (906)
T COG0567 442 PSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYKEM---DWLEGDWSGYLNAG-L 517 (906)
T ss_pred ccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHHhh---hccccccccccCCc-c
Confidence 9999999999999999999999999999999999999999999999999999888877622 23667788876544 3
Q ss_pred CCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCc
Q psy9579 489 DNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGT 568 (887)
Q Consensus 489 ~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGt 568 (887)
...+|.++.+.|+.|+.+++++|++|++||+|+++++.|.+|++++.++||++||.|||+||+.+|.+||++||||+|||
T Consensus 518 ~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGT 597 (906)
T COG0567 518 RHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGT 597 (906)
T ss_pred cccccccCHHHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccccccCCCcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchh
Q psy9579 569 FSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQ 648 (887)
Q Consensus 569 FshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq 648 (887)
|+|||+|+|||. ++..|.||++|+.++|.|.|+||||||+|++|||||||+..|++|++||||||||+||||
T Consensus 598 F~hRHaVlhdq~--------~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQ 669 (906)
T COG0567 598 FSHRHAVLHDQK--------TGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQ 669 (906)
T ss_pred ccccceeeeccc--------CccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCe
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEE
Q psy9579 649 VIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLI 728 (887)
Q Consensus 649 ~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv 728 (887)
++|||||+||++||.++||||++|||||+||||||||+|+|||||||++.||+||+||||+|+||+||||+.+++|+|||
T Consensus 670 vviDQfisSge~KW~r~sgLv~lLPHgyEGQGPEHSSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLi 749 (906)
T COG0567 670 VVIDQFISSGEQKWGRMSGLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLI 749 (906)
T ss_pred eeeccccccHHHHHHHhcCceEEccCCCCCCCCcCccchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCH
Q psy9579 729 IITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPN 808 (887)
Q Consensus 729 ~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~ 808 (887)
+|+||+|||||.++|+++||++|.|++++.|... ...+|+|||+|||||||||.+.+++.+..+++|||+|||||||.
T Consensus 750 imtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~--~~~~v~rvvlcSGKvyydl~~~r~~~g~~dvaiiRiEqLyPfP~ 827 (906)
T COG0567 750 VMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDE--LDPKVKRVVLCSGKVYYDLLEQREKDGRDDVAIVRIEQLYPFPA 827 (906)
T ss_pred ecChhhhhhccccCCchhhhchhhhhhhhccccc--cccceeeEEeeccchHHHHHHHHhhcCCcceeEEeeecccCchH
Confidence 9999999999999999999999999999998743 23459999999999999999999877778999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhhcC
Q psy9579 809 EDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFLK 887 (887)
Q Consensus 809 ~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~~~ 887 (887)
+.|.+.+++|++++++|||||||+|||+|.|+.+.+.+.+.+...++|+||++++|||+|+...|++||++++++||..
T Consensus 828 ~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~~l~~~~~l~yagRp~saSpA~G~~~~h~~eq~~l~~dal~~ 906 (906)
T COG0567 828 KALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEEVLPEGDKLRYAGRPASASPAVGSMSVHQKQQEKLLEDALGV 906 (906)
T ss_pred HHHHHHHHhccccccccccccCCCccccHHHHHHHHHHhhcccchhcccCCCcccCcccccHHHHHHHHHHHhHhhhcC
Confidence 9999999999999999999999999999999999999999876779999999999999999999999999999999963
No 6
>KOG0451|consensus
Probab=100.00 E-value=5.5e-208 Score=1691.74 Aligned_cols=862 Identities=39% Similarity=0.700 Sum_probs=802.4
Q ss_pred CCCCCCCchHHHhhhhhcccc-------chhhhhHHHHHHHHHHHHhcccccCccCCCCCCccccccccCcccccCCCCc
Q psy9579 2 QSMKYRNTPINFKNLNKEKIN-------ILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNE 74 (887)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~L~~~~~gl~~ 74 (887)
|++.|++.+--|..+++..+. ...-..+..+.+||++||.|||+.|++|||.+..+.... .+|+|..||+-.
T Consensus 19 q~R~Y~~e~GV~Gy~P~~p~~~~e~qg~l~~~p~~a~~~rlv~afr~hGhk~A~vnPl~~l~~v~e~-qeL~pa~yG~~~ 97 (913)
T KOG0451|consen 19 QSRCYHSEKGVWGYKPIAPREFQEAQGVLASRPSQANVYRLVEAFRQHGHKLAAVNPLSILTSVQEL-QELSPAFYGLQR 97 (913)
T ss_pred hhhcccCCCcccccCCCChhhhhcccccccCCcccccHHHHHHHHHHhcchhhccCchHhhhccHHH-HHhCHHhhcchh
Confidence 789999999888888877663 122234678999999999999999999999954322033 679999999642
Q ss_pred cccccccccCccccCCcccCHHHHHHHHHHHhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q psy9579 75 SDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAA 154 (887)
Q Consensus 75 ~dl~~~~~~~~~~~~~~~~tl~ei~~~L~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~a 154 (887)
.| |.+..++...+|.|+.+.|+.+|||++.+||+||.|.|||+|+.+++|+.. ...+.+|++.+|-+.|++.
T Consensus 98 t~-------gLl~~~k~~~sl~~l~~~L~~IYCG~tsiEfs~v~~~eEr~W~a~nFE~l~-~e~l~keEr~~i~~Lmlks 169 (913)
T KOG0451|consen 98 TD-------GLLSGPKVAHSLAQLEQLLKDIYCGSTSIEFSYVEDIEEREWLARNFETLD-QEQLGKEERCEIAELMLKS 169 (913)
T ss_pred hh-------hhhcCccccccHHHHHHHHHhheeCcchhhhhhhccHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhh
Confidence 11 111124567899999999999999999999999999999999999999984 5689999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccCCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCC-
Q psy9579 155 EEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSEN- 233 (887)
Q Consensus 155 r~fE~~l~~~~~~~krfg~eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~- 233 (887)
..||+||++||++-||+|.+|.|++..-..++++.++..+++++++||+||||+|+|+..+..||..||.++.|.+..+
T Consensus 170 q~fD~FlatKFpTvKRYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE 249 (913)
T KOG0451|consen 170 QAFDNFLATKFPTVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPE 249 (913)
T ss_pred hhHHHHHHhccchhhhhccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --CCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccC---------CCCCceEEEEeecCc
Q psy9579 234 --LLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDD---------KFGTQVLPVLVHGDA 302 (887)
Q Consensus 234 --~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~---------~~~~~~v~i~~hGDg 302 (887)
...|||.+|+-.|.+.+|.++++|++|++||||||+|||||+|++|++|...++ ..++.++.+.+||||
T Consensus 250 ~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDa 329 (913)
T KOG0451|consen 250 DIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDA 329 (913)
T ss_pred hhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecch
Confidence 357999999999989999999999999999999999999999999999987643 235678999999999
Q ss_pred ccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9579 303 AFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVE 382 (887)
Q Consensus 303 A~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e 382 (887)
||+|||+|+|++|||.+|.|.+||+||+|+|||+|||||.+..||+.||+|+||.+++|+|||||||||+|.+|+++|++
T Consensus 330 aF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~ 409 (913)
T KOG0451|consen 330 AFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFR 409 (913)
T ss_pred hhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9579 383 YRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSI 462 (887)
Q Consensus 383 ~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~ 462 (887)
|.|+|+||||||++|||++||||.|||.||.|.||+.+.....+...|.++|+++|++|+++++++++++.+.+.+.++.
T Consensus 410 Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~ 489 (913)
T KOG0451|consen 410 YQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELAL 489 (913)
T ss_pred HHHHhhhhheeehHHHHHhccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCccCcccccccccc-CCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHH-HHHHHhhhcCCCcccHH
Q psy9579 463 VNSIPSNFIYDKSKSEWAPFLK-NGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKI-LKDRVEMGCGKLNVDWG 540 (887)
Q Consensus 463 a~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~-~~~R~~m~~~~~~idw~ 540 (887)
+..+.|++.. +...|.++.. +.....++||++.+.|..||...+++|++|+.||.|-|. ...|.+-++++.+||||
T Consensus 490 ~~~y~Pp~~~--~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWa 567 (913)
T KOG0451|consen 490 APAYQPPPSY--FEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWA 567 (913)
T ss_pred CCccCCCchh--hHHhhhhhccChhhhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchH
Confidence 9988776522 6788999874 334456899999999999999999999999999999886 46688878888999999
Q ss_pred HHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccC-CceEEeccccchHHHH
Q psy9579 541 MAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQ-AKFHIINSILSEEAIL 619 (887)
Q Consensus 541 ~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~-g~~~V~nspLsE~ail 619 (887)
+||+||+||||.+|.+||||||||||||||||||+++||. |+..|+||+++.+.+ |..+|-||+|||.|||
T Consensus 568 TAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~--------Td~~~IPLN~m~~~qkg~LEvans~LSEEAvL 639 (913)
T KOG0451|consen 568 TAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQ--------TDEMFIPLNSMEGGQKGKLEVANSILSEEAVL 639 (913)
T ss_pred HHHHHHHHHHHhccCceeeeccccCcccccccceeeeecc--------ccceeeeccccCCCcCCeeEeccccccHhhhh
Confidence 9999999999999999999999999999999999999999 999999999998765 7899999999999999
Q ss_pred HHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcC--
Q psy9579 620 GFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCAN-- 697 (887)
Q Consensus 620 G~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~-- 697 (887)
|||||+|+.+|+.|+|||||||||.||||+|||.||++||+||..+|||||+|||||+|.||||||||||||||||+.
T Consensus 640 GFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl~ssglvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E 719 (913)
T KOG0451|consen 640 GFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKE 719 (913)
T ss_pred hhhcccccCCcccceeehhhhcccccCceEEEeeeecccchhhhhhCCeEEEccCCcCCCCCccchhhHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -------CCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCc-ceeeccccccccCCCCc
Q psy9579 698 -------NNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGK-FNKIINEIDDIIDPKKI 769 (887)
Q Consensus 698 -------~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~-f~~~i~~~~~~~~~~~v 769 (887)
.||.||+||||||||||||||+.++|||||||..||.|||+|.++|+++||.+|+ |++||+|.. .++++|
T Consensus 720 ~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~--~~p~kv 797 (913)
T KOG0451|consen 720 TSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTI--AKPEKV 797 (913)
T ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCccccccccccc--cChhHh
Confidence 3999999999999999999999999999999999999999999999999999997 999999974 378899
Q ss_pred eEEEEEechHHHHHHHHHHHcCC-CcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhh
Q psy9579 770 KRIIACSGKIYYDLFNFRKKKNK-NDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL 848 (887)
Q Consensus 770 ~r~i~~~G~~~~~l~~~~~~~~~-~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~ 848 (887)
++||+||||.||.|.++|+++|. +.++|||+|.|+|||.+.+.+.++||++++++||.||||+|||+|+||+||+++.+
T Consensus 798 kkvifcSGKH~y~l~k~Re~rgakd~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWsFVrPRFEn~l 877 (913)
T KOG0451|consen 798 KKVIFCSGKHYYTLAKEREKRGAKDTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRFENLL 877 (913)
T ss_pred eEEEEecCcchhhHHHHHHhcccccceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcceeechHHHHHh
Confidence 99999999999999999999886 45899999999999999999999999999999999999999999999999999987
Q ss_pred ccCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhhc
Q psy9579 849 NSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFL 886 (887)
Q Consensus 849 ~~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~~ 886 (887)
. .+|+|+||++.+.||+|..+.|+.|.++|+.+.|.
T Consensus 878 g--~~L~~~GRpelp~pAtgIG~vH~~e~eeiva~tFa 913 (913)
T KOG0451|consen 878 G--QQLHYCGRPELPTPATGIGKVHKREVEEIVAATFA 913 (913)
T ss_pred h--hhheecCCCCCCCccccchhhhhhhHHHHHhhccC
Confidence 6 67999999999999999999999999999999874
No 7
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=5.2e-78 Score=641.46 Aligned_cols=261 Identities=60% Similarity=1.027 Sum_probs=248.2
Q ss_pred HHHHHHHHHhcCCccccCCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCC---
Q psy9579 157 FEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSEN--- 233 (887)
Q Consensus 157 fE~~l~~~~~~~krfg~eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~--- 233 (887)
||+||++||+++||||++|+|+++|+++++++.++..+++||++||+||||+|+|+|++|+|+++||+||+|+.+.+
T Consensus 1 ~e~f~~~~f~~~krfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~ 80 (265)
T cd02016 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDD 80 (265)
T ss_pred ChhhHHHhcCCCeEEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988733
Q ss_pred CCCCCcccccccccccCCC-CceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHH
Q psy9579 234 LLSGDVKYHQGFSSNINTP-GGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVME 312 (887)
Q Consensus 234 ~~~GDvkyHlG~s~~~~~~-gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~E 312 (887)
.++||||||+|++.+++.. |+++|++|++||||+|+++|+|+|+|+|.|+++++...++.|+|++|||||++|||+|||
T Consensus 81 ~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~E 160 (265)
T cd02016 81 EGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYE 160 (265)
T ss_pred CCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHH
Confidence 3678999999999776654 889999999999999999999999999999998655556899999999999879999999
Q ss_pred HHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEE
Q psy9579 313 TLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCI 392 (887)
Q Consensus 313 aLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~Pvl 392 (887)
+||||+|++|.++|+||||+||||||||++++++++.+|+|+|++||+|++|||||||+||++|+++|++|+|+|+||+|
T Consensus 161 alNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~l 240 (265)
T cd02016 161 TLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVV 240 (265)
T ss_pred HHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999997777779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCCCCCCCCCChHhh
Q psy9579 393 INIICFRKLGHNEQDTPSLTQPLMY 417 (887)
Q Consensus 393 Ie~vtYR~~GHne~DdP~~tqp~~Y 417 (887)
||++|||++|||++|+|+||||.||
T Consensus 241 Ie~~tYR~~GHse~D~p~~t~p~my 265 (265)
T cd02016 241 IDLVCYRRHGHNELDEPSFTQPLMY 265 (265)
T ss_pred EEEEEecCCCCCCcCCccccCCCcC
Confidence 9999999999999999999999998
No 8
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-68 Score=584.51 Aligned_cols=302 Identities=20% Similarity=0.205 Sum_probs=282.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCC-cEEecCCccchHHHH
Q psy9579 137 PNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIR-EIVIGMAHRGRLNVL 211 (887)
Q Consensus 137 ~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~-D~v~gm~HRgr~~~L 211 (887)
..+++++++++|++|+++|.||+++..++.++|..|+ .||||+++|+ +.+|+.+ ||++| +||+|+++|
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~------~~aL~~~~D~i~~-~YR~h~~~l 94 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGA------AAALRPGEDWIFP-TYRDHGHLL 94 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHH------HHhcCCCCCEeec-ccCccccce
Confidence 3689999999999999999999999999999999866 9999999999 9999965 99999 999999999
Q ss_pred HHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEE-----EeecCCCcccccccccchhHHHHHhhcc
Q psy9579 212 VNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHL-----SLAFNPSHLEIINPVVEGSAKARMERRD 286 (887)
Q Consensus 212 ~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl-----~l~~npShle~v~Pva~G~A~A~q~~~~ 286 (887)
++|+|+.+||+|++|+.+| +| +|++++||+ .+++..+.+++|.|+|+|+|+|.|++++
T Consensus 95 --~~G~~~~~~~a~~~G~~~g------------~~---kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~ 157 (358)
T COG1071 95 --ARGVPLKEIMAELLGKATG------------PC---KGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGT 157 (358)
T ss_pred --ecCCCHHHHHHHHhccccC------------CC---CCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCC
Confidence 9999999999999999998 56 678888887 3556667789999999999999999985
Q ss_pred CCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEc
Q psy9579 287 DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVN 366 (887)
Q Consensus 287 ~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~Vd 366 (887)
++.|++|++||||+ +||+|||+||||++ |++| +||+|+|||||||+|.+.++....++.+|.+||||++.||
T Consensus 158 ----~~~Va~~~~GDGat-~qG~FhEalN~A~v--~klP-vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VD 229 (358)
T COG1071 158 ----KDGVAVAFFGDGAT-NQGDFHEALNFAAV--WKLP-VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVD 229 (358)
T ss_pred ----CCcEEEEEecCCcc-ccchHHHHHHHHHH--hcCC-EEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEEC
Confidence 24599999999999 99999999999999 9999 9999999999999988878888788889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHH
Q psy9579 367 GDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESE 446 (887)
Q Consensus 367 G~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~ 446 (887)
||||+|||.++++|++++|++++|+|||++|||+.|||++|||+-|++......|+++|||.+++++|++.|++|+++++
T Consensus 230 G~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~ 309 (358)
T COG1071 230 GNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELE 309 (358)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999988888888878899899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC
Q psy9579 447 NMIKEFNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 447 ~i~~~~~~~l~~a~~~a~~~~~~~ 470 (887)
+|+++++++|++|++.|++.|.|.
T Consensus 310 ~i~~e~~~~V~ea~e~a~~~p~P~ 333 (358)
T COG1071 310 AIEAEAKAEVDEAVEFAEASPYPD 333 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999988554
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=7.4e-66 Score=562.72 Aligned_cols=293 Identities=23% Similarity=0.290 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHH
Q psy9579 149 FLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFD 224 (887)
Q Consensus 149 ~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~ 224 (887)
++|+++|.||+.+..+|..++++|+ .||||+++|+ +.+++++||+++ +||+|+++| ++|.++.++|+
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~------~~~l~~~D~v~~-~yR~~~~~l--a~g~~~~~~~~ 71 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAA------AAALRPGDWVFP-YYRDHGHAL--ARGIDLEEIFA 71 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHH------HHHSCTTSEEEE-CSTTHHHHH--HTTT-HHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHH------HHhccCCCEEEe-cccchhhhh--hccccccchhH
Confidence 4688888999999999999999887 9999999999 899999999998 899999999 99999999999
Q ss_pred HccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCccc
Q psy9579 225 EFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAF 304 (887)
Q Consensus 225 e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~ 304 (887)
|++|+..+..++-. +.|++.. + . .+.+.+++++.++|+|+|.|+|.|++++ +.|+||+|||||+
T Consensus 72 e~~g~~~g~~g~~~-~~~~~~~------~--~--~~~~~~~~vg~~~p~a~G~A~a~k~~~~-----~~v~v~~~GDga~ 135 (300)
T PF00676_consen 72 ELLGKAKGHGGGRH-PLHFSDK------G--L--NILGASSPVGAQVPIAAGVALAIKYRGK-----DGVVVCFFGDGAT 135 (300)
T ss_dssp HHHTBTTSTTTTGC-TTEEEBT------T--T--TBEEEESSTTTHHHHHHHHHHHHHHTTS-----SEEEEEEEETGGG
T ss_pred HhcCcccCCCCCcc-ccccccc------c--c--eeeeccccccccCccccchhHhhhhcCC-----ceeEEEEecCccc
Confidence 99999965322223 4554322 1 1 1234567888889999999999999886 9999999999998
Q ss_pred ccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHH
Q psy9579 305 SGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYR 384 (887)
Q Consensus 305 ~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~ 384 (887)
+||+|||+||||++ |++| +||||+||||||||+.++++++.+++++|++||+|+++||||||++|++++++|++|+
T Consensus 136 -~qG~~~EalN~A~~--~~lP-vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~ 211 (300)
T PF00676_consen 136 -SQGDFHEALNLAAL--WKLP-VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYA 211 (300)
T ss_dssp -GSHHHHHHHHHHHH--TTTS-EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHH
T ss_pred -ccCccHHHHHHHhh--ccCC-eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHH
Confidence 99999999999999 9999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCcEEEEEEeeecCCCCCCCCCCCCC-hHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy9579 385 MKFKKDCIINIICFRKLGHNEQDTPSLTQ-PLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIV 463 (887)
Q Consensus 385 r~~~~PvlIe~vtYR~~GHne~DdP~~tq-p~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a 463 (887)
|+|+||+|||++|||++|||++|||++|| |.+|..+|+++||+.+|+++|+++|++|++++++|+++++++|++++++|
T Consensus 212 R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a 291 (300)
T PF00676_consen 212 RAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFA 291 (300)
T ss_dssp HTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCC
Q psy9579 464 NSIPSNF 470 (887)
Q Consensus 464 ~~~~~~~ 470 (887)
++.|.|.
T Consensus 292 ~~~p~p~ 298 (300)
T PF00676_consen 292 EASPEPD 298 (300)
T ss_dssp HHSHBC-
T ss_pred HhCCCCC
Confidence 9987543
No 10
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-63 Score=527.85 Aligned_cols=299 Identities=19% Similarity=0.268 Sum_probs=264.5
Q ss_pred ccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchH
Q psy9579 537 VDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEE 616 (887)
Q Consensus 537 idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ 616 (887)
|+-||.| .|++|.+|+|+||||+. .||+|+.++||.++||+.||+||||||.
T Consensus 8 i~~Am~~------eM~rD~~V~v~GEDVg~----------------------~GGvf~~T~GL~~kfG~~RV~DTPiaE~ 59 (324)
T COG0022 8 INEAMDE------EMERDERVVVLGEDVGV----------------------YGGVFRVTKGLQEKFGEERVIDTPIAES 59 (324)
T ss_pred HHHHHHH------HHhcCCCEEEEcccccc----------------------cCChhhhchhHHHHhCccceecCccchh
Confidence 5555555 47899999999999965 6889999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccC------cEEEecccCCCCCccccCchHHH
Q psy9579 617 AILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISG------LTLMLPHGYEGQGPEHSSARLER 690 (887)
Q Consensus 617 ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sg------lv~~lP~G~~g~GpeHSs~r~Er 690 (887)
+|+|.++|+|+.|.| ||+|+||.||++.| |||++|+ .+|.++||| ||+|.|.|..-++++|||+++|.
T Consensus 60 gi~G~avGaA~~Glr--PivEiqf~dF~~~a---~dqi~n~-aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea 133 (324)
T COG0022 60 GIAGIAVGAALTGLR--PIVEIQFADFIYPA---FDQIVNQ-AAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEA 133 (324)
T ss_pred hhHHHHHHHHHcCCc--ceEEEEecchhHHH---HHHHHHH-HHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHH
Confidence 999999999999998 79999999999997 9999988 699998875 99999999876677666777999
Q ss_pred HHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEcccccccc-CCCCCccccCCCCcceeeccccccccCCCCc
Q psy9579 691 FLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRK-KEASSTLMDLATGKFNKIINEIDDIIDPKKI 769 (887)
Q Consensus 691 ~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~-~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v 769 (887)
||. +.|||+||+||||+|+++||+++|++| |||||||||.|||. +.. .+++.|..+++++.+.|+|+||
T Consensus 134 ~f~--h~PGlKVV~PStpyDAKGLL~aAIrd~--dPViflE~k~lY~~~~~e------VP~~~Y~iPlGkA~i~reG~Dv 203 (324)
T COG0022 134 LFA--HIPGLKVVMPSTPYDAKGLLKAAIRDP--DPVIFLEHKRLYRSFKGE------VPEEDYTIPLGKAKIVREGSDV 203 (324)
T ss_pred HHh--cCCCceEEecCChHHHHHHHHHHhcCC--CCEEEEecHHHhcccccC------CCCCCccccccceeeEecCCce
Confidence 995 556999999999999999999999998 99999999999994 433 4567788999999999999999
Q ss_pred eEEEEEechHHHHHHHHHHHcC--CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHh
Q psy9579 770 KRIIACSGKIYYDLFNFRKKKN--KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKY 847 (887)
Q Consensus 770 ~r~i~~~G~~~~~l~~~~~~~~--~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~ 847 (887)
|||+||.+.+..++|+++++ .+++||||||+|+|||+++|.+|++||+| +|+|||.++.+|++++|.+.|+|.
T Consensus 204 --Tivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~PlD~etIi~SvkKTgR---~viV~Ea~~~~g~gaei~A~i~e~ 278 (324)
T COG0022 204 --TIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPLDKETIIASVKKTGR---LVIVHEAPKTGGIGAEIAALIAEE 278 (324)
T ss_pred --EEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCccCHHHHHHHHHhhCc---EEEEEeccccCChHHHHHHHHHHH
Confidence 79999996666666554432 37999999999999999999999999999 699999999999999999999886
Q ss_pred -hc--cCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHh
Q psy9579 848 -LN--STQKLIYVGRSCSASPASGYYSKHCKEQITLLNNA 884 (887)
Q Consensus 848 -~~--~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a 884 (887)
|. +.+..|..|.+.+.+++.-+++...+..++|++.+
T Consensus 279 ~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av 318 (324)
T COG0022 279 AFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAV 318 (324)
T ss_pred HHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHH
Confidence 43 35667888999988899999999999999998765
No 11
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=6.8e-63 Score=549.65 Aligned_cols=298 Identities=18% Similarity=0.193 Sum_probs=272.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHH
Q psy9579 137 PNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLV 212 (887)
Q Consensus 137 ~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~ 212 (887)
..+++++++++|+.|+++|.||+++..+|.+++..|+ .||||+++|+ +++|+++||+++ +||+|+++|
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~------~~aL~~~D~~~~-~yR~hg~~l- 96 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGM------EAAITKEDAIIT-AYRDHCTHL- 96 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHH------HHhcCCCCEEEe-chhhHHHHH-
Confidence 4789999999999999999999999999999987554 9999999999 999999999999 999999999
Q ss_pred HHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEE-----EeecCCCcccccccccchhHHHHHhhccC
Q psy9579 213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHL-----SLAFNPSHLEIINPVVEGSAKARMERRDD 287 (887)
Q Consensus 213 n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl-----~l~~npShle~v~Pva~G~A~A~q~~~~~ 287 (887)
++|+|+.++|+|++|+.+| +| +|+||+||+ .+++..+++|.+.|+|+|+|+|.|+++.
T Consensus 97 -a~G~~~~~~~ae~~g~~~g------------~~---~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~- 159 (362)
T PLN02269 97 -GRGGTVLEVFAELMGRKDG------------CS---RGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKE- 159 (362)
T ss_pred -HcCCCHHHHHHHHcCCCCC------------CC---CCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCC-
Confidence 9999999999999999988 45 677778877 2234446789999999999999999986
Q ss_pred CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcC
Q psy9579 288 KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNG 367 (887)
Q Consensus 288 ~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG 367 (887)
+.+++|+|||||+ +||.|||+||||++ |++| +||||+||||||||+...+..+..++++ ++++|+++|||
T Consensus 160 ----~~v~v~~~GDGa~-~eG~~~Ealn~A~~--~~lP-vvfvveNN~~aist~~~~~~~~~~~~~~--~~~~p~~~VDG 229 (362)
T PLN02269 160 ----ENVAFALYGDGAA-NQGQLFEALNIAAL--WDLP-VIFVCENNHYGMGTAEWRAAKSPAYYKR--GDYVPGLKVDG 229 (362)
T ss_pred ----CCeEEEEECCCCc-ccCHHHHHHHHhhc--cCcC-EEEEEeCCCEeccCchhhhccchHHHHh--hcCCCeEEECC
Confidence 8899999999998 99999999999999 9999 9999999999999998777666655544 46899999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCC-CCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHH
Q psy9579 368 DDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTP-SLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESE 446 (887)
Q Consensus 368 ~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP-~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~ 446 (887)
+|++||+++++.|++++|+ +||+|||++|||++|||++|++ .|+.|.+|+.+++++||+.+|+++|+++|++|+++++
T Consensus 230 ~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~ 308 (362)
T PLN02269 230 MDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELK 308 (362)
T ss_pred CCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999 9999999999999999999987 6777888886666899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC
Q psy9579 447 NMIKEFNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 447 ~i~~~~~~~l~~a~~~a~~~~~~~ 470 (887)
+++++++++|++++++|++.|.|+
T Consensus 309 ~i~~e~~~~v~~a~~~A~~~p~P~ 332 (362)
T PLN02269 309 DIEKEIRKEVDDAVAKAKESPMPD 332 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999988654
No 12
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1e-60 Score=525.73 Aligned_cols=296 Identities=22% Similarity=0.208 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhC
Q psy9579 141 KEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILG 216 (887)
Q Consensus 141 ~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G 216 (887)
+|+++++|+.|+++|.||+++.+++++++..|+ .||||+++|+ +.+++++||+++ +||+|+.+| ++|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~------~~al~~~D~~~~-~yR~~~~~l--a~G 71 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGL------IAALKPDDYVIT-SYRDHGHAL--ARG 71 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHH------HHhCCCCCEEEe-chhhHHHHH--HcC
Confidence 468899999999999999999999999987653 9999999999 999999999999 999999999 999
Q ss_pred CCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEE-----EeecCCCcccccccccchhHHHHHhhccCCCCC
Q psy9579 217 KKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHL-----SLAFNPSHLEIINPVVEGSAKARMERRDDKFGT 291 (887)
Q Consensus 217 ~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl-----~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~ 291 (887)
.|+.++|+|++|+.+| +| +|++++||+ .+....+.+|...|+|+|+|+|.|+++.
T Consensus 72 ~~~~~~~~~~~g~~~g------------~~---~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~----- 131 (315)
T TIGR03182 72 VPPKEVMAELTGRATG------------CS---KGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGN----- 131 (315)
T ss_pred CCHHHHHHHHcCCCCC------------CC---CCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCC-----
Confidence 9999999999999988 34 455666665 2233446779999999999999999875
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
+.++|+++||||+ +||.|||+||+|++ |++| +||||+||+|||+|+...+++..+++++|++||+|+++|||+|++
T Consensus 132 ~~~vv~~~GDGa~-~~g~~~ealn~A~~--~~lP-vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~ 207 (315)
T TIGR03182 132 DNVTACFFGDGAA-NQGQFYESFNMAAL--WKLP-VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVL 207 (315)
T ss_pred CCEEEEEeCCCcc-cccHHHHHHHHhhc--cCcC-EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHH
Confidence 7899999999999 99999999999999 9999 999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKE 451 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~ 451 (887)
+|+.+++.|++++|++++|+|||++|||++|||++|+|.||+|.+|+.++ .+||+.+|+++|+++|++|++++++++++
T Consensus 208 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~ 286 (315)
T TIGR03182 208 AVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKE 286 (315)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998665 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q psy9579 452 FNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 452 ~~~~l~~a~~~a~~~~~~~ 470 (887)
++++++++++.+++.|.|+
T Consensus 287 ~~~~v~~a~~~a~~~p~p~ 305 (315)
T TIGR03182 287 VRAEVEEAVEFAENSPEPP 305 (315)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 9999999999999987554
No 13
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=1.5e-60 Score=540.46 Aligned_cols=306 Identities=18% Similarity=0.218 Sum_probs=278.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHH
Q psy9579 136 TPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVL 211 (887)
Q Consensus 136 ~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L 211 (887)
.+.+++|+++++|++|+++|.||+++.++|.++|++|+ .||||+++|+ +++++++||+++ +||+|+++|
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~------~~aL~~~D~v~~-~yR~h~~~L 152 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGF------IKLLKKDDSVVS-TYRDHVHAL 152 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHH------HHHcCCCCEEEc-cCcChHHhh
Confidence 35899999999999999999999999999999999887 9999999999 999999999999 999999999
Q ss_pred HHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEE-----EeecCCCcccccccccchhHHHHHhhcc
Q psy9579 212 VNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHL-----SLAFNPSHLEIINPVVEGSAKARMERRD 286 (887)
Q Consensus 212 ~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl-----~l~~npShle~v~Pva~G~A~A~q~~~~ 286 (887)
++|+++.+||+|++|+.++ +| +|+|++||+ .+....+++|.+.|+|+|+|+|.|+++.
T Consensus 153 --a~G~~~~~~mael~Gk~~g------------~~---~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~ 215 (433)
T PLN02374 153 --SKGVPARAVMSELFGKATG------------CC---RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRRE 215 (433)
T ss_pred --hcCCCHHHHHHHHcCCCCC------------CC---CCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhc
Confidence 9999999999999999987 34 455666666 1123335678899999999999999863
Q ss_pred C--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEE
Q psy9579 287 D--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFH 364 (887)
Q Consensus 287 ~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~ 364 (887)
. ....+.++||++|||++ ++|.|||+||+|++ |++| +||||+||+|+++|+...+++.+.++++|++||+|+++
T Consensus 216 ~~~~~~~~~vvv~~~GDGa~-~eG~f~EaLn~A~~--~~LP-vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~ 291 (433)
T PLN02374 216 VLKEESCDDVTLAFFGDGTC-NNGQFFECLNMAAL--WKLP-IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVH 291 (433)
T ss_pred cccccCCCCEEEEEECCCcc-ccChHHHHHHHHHH--hCCC-EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEE
Confidence 1 11236799999999999 89999999999999 9999 99999999999999888877778899999999999999
Q ss_pred EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHH
Q psy9579 365 VNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNE 444 (887)
Q Consensus 365 VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e 444 (887)
|||+|+++|+++++.|++++|++++|+|||+.|||++|||++|++.|++|.+++. |+.+||+.+|+++|+++|++|+++
T Consensus 292 VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~YR~~~e~~~-~~~~DPi~~~~~~L~~~gi~te~e 370 (433)
T PLN02374 292 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAH-YAARDPIAALKKYLIENGLATEAE 370 (433)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccccCCHHHHHH-HHcCCcHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999985 556999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy9579 445 SENMIKEFNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 445 ~~~i~~~~~~~l~~a~~~a~~~~~~~ 470 (887)
+++|+++++++|+++++.|++.|.+.
T Consensus 371 ~~~i~~~~~~~v~~a~~~A~~~p~P~ 396 (433)
T PLN02374 371 LKAIEKKIDEVVEDAVEFADASPLPP 396 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999998887544
No 14
>KOG0225|consensus
Probab=100.00 E-value=9.5e-60 Score=498.80 Aligned_cols=306 Identities=19% Similarity=0.246 Sum_probs=278.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHH
Q psy9579 136 TPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVL 211 (887)
Q Consensus 136 ~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L 211 (887)
...+++|+.+.+|+.|+++|.||..+..+|...|++|| .||||+.+|+ -+++...|.|+. +||+|+..+
T Consensus 53 s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGm------e~ait~~D~iIt-sYR~Hg~~~ 125 (394)
T KOG0225|consen 53 SVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGM------EAAITKSDSIIT-SYRCHGWTY 125 (394)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHH------HHhccCCCceEE-EeeeeeEEe
Confidence 34689999999999999999999999999999999998 9999999999 566778899998 999999999
Q ss_pred HHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCc------ccccccccchhHHHHHhhc
Q psy9579 212 VNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSH------LEIINPVVEGSAKARMERR 285 (887)
Q Consensus 212 ~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npSh------le~v~Pva~G~A~A~q~~~ 285 (887)
.+|.++.++|+|++|+.+| +| +|.|||||+ ++++- +|+|.|+++|+|+|.|+++
T Consensus 126 --~~G~S~~~v~aEL~Gr~~G------------c~---kGKGGSMHm---y~k~FyGGnGIVGAQiPLGaGia~A~kY~~ 185 (394)
T KOG0225|consen 126 --LRGVSVREVLAELMGRQAG------------CS---KGKGGSMHM---YAKNFYGGNGIVGAQIPLGAGIAFAQKYNR 185 (394)
T ss_pred --ecCccHHHHHHHHhccccc------------cc---cCCCcceee---ecccccCccceeccCCCccccHHHHHHhcc
Confidence 9999999999999999998 77 899999999 77764 4888999999999999998
Q ss_pred cCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEE
Q psy9579 286 DDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV 365 (887)
Q Consensus 286 ~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~V 365 (887)
+ +.|++++.||||. +||.++|++|||+| |+|| +|||||||.||+.|+.+++.+++....++ .| ||+++|
T Consensus 186 ~-----~~v~~alYGDGAa-NQGQ~fEa~NMA~L--W~LP-~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~V 254 (394)
T KOG0225|consen 186 E-----DAVCFALYGDGAA-NQGQVFEAFNMAAL--WKLP-VIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKV 254 (394)
T ss_pred C-----CceEEEEeccccc-cchhHHHHhhHHHH--hCCC-EEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEE
Confidence 7 8999999999999 99999999999999 9999 99999999999999999888888788888 45 999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCC-CCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHH
Q psy9579 366 NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDT-PSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNE 444 (887)
Q Consensus 366 dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~Dd-P~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e 444 (887)
||+|+++|..|+++|.+|+++++||+++|+.|||++|||.+|- -+|+.-..-+..+.++|||..++++|++.++.|++|
T Consensus 255 dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~E 334 (394)
T KOG0225|consen 255 DGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEE 334 (394)
T ss_pred CCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHH
Confidence 9999999999999999999999999999999999999999993 223322233335678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccc
Q psy9579 445 SENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFL 483 (887)
Q Consensus 445 ~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~ 483 (887)
+++|+++++++|++++++|++.|++. .+..|.+++
T Consensus 335 LKai~k~irkeVdeav~~A~~~p~p~----~~eL~~dvy 369 (394)
T KOG0225|consen 335 LKAIDKEIRKEVDEAVAFATASPEPE----PSELFTDVY 369 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC----HHHHHHHhh
Confidence 99999999999999999999998765 344666664
No 15
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=1.9e-58 Score=511.99 Aligned_cols=305 Identities=19% Similarity=0.193 Sum_probs=275.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHH
Q psy9579 137 PNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLV 212 (887)
Q Consensus 137 ~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~ 212 (887)
..+++|+++++|+.|+++|.||+.+.++|.+++..|+ .||||+++|+ +.+++++||+++ +||+|+++|
T Consensus 15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~------~~al~~~D~~~~-~yR~~~~~l- 86 (341)
T CHL00149 15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGV------IKLLAETDYVCS-TYRDHVHAL- 86 (341)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHH------HHhCCCCCEEEc-ccccHHHHH-
Confidence 4689999999999999999999999999999987654 9999999999 999999999999 999999999
Q ss_pred HHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEE-----eecCCCcccccccccchhHHHHHhhccC
Q psy9579 213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLS-----LAFNPSHLEIINPVVEGSAKARMERRDD 287 (887)
Q Consensus 213 n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~-----l~~npShle~v~Pva~G~A~A~q~~~~~ 287 (887)
++|+|+.++|+|++|+.+| +| +|+|++||+. ++...+.+|...|.|+|+|+|.++++..
T Consensus 87 -a~G~~~~~~~ae~~g~~~g------------~~---~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~ 150 (341)
T CHL00149 87 -SKGVPPKNVMAELFGKETG------------CS---RGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQV 150 (341)
T ss_pred -HcCCCHHHHHHHHcCCCCC------------CC---CCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccc
Confidence 9999999999999999988 45 5677777761 2233356788899999999999988631
Q ss_pred --CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEE
Q psy9579 288 --KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV 365 (887)
Q Consensus 288 --~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~V 365 (887)
+...+.+++|++|||++ ++|.|||+||+|++ |++| +||||+||+|+++|+...+++...++++|++||+|+++|
T Consensus 151 ~~~~~~~~vvv~~~GDGa~-~~G~~~Ealn~A~~--~~LP-vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V 226 (341)
T CHL00149 151 LKEVQPLRVTACFFGDGTT-NNGQFFECLNMAVL--WKLP-IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV 226 (341)
T ss_pred cccCCCCCEEEEEeCCchh-hhcHHHHHHHHHhh--cCCC-EEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE
Confidence 11247899999999999 89999999999999 9999 999999999999999888777788999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHH
Q psy9579 366 NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNES 445 (887)
Q Consensus 366 dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~ 445 (887)
||+|+++|+.+++.|++++|++++|+|||+.|||++|||++|++.|+.+. +...|+++||+.+|+++|+++|++|++++
T Consensus 227 dg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~~YR~~~-e~~~~~~~DPi~~~~~~L~~~g~~~~~~~ 305 (341)
T CHL00149 227 DGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQ-EKEAWVARDPIKKLKSYIIDNELASQKEL 305 (341)
T ss_pred eCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCccCCCHH-HHHHHhcCCHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999999999999999999988866544 44567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCC
Q psy9579 446 ENMIKEFNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 446 ~~i~~~~~~~l~~a~~~a~~~~~~~ 470 (887)
++++++++++|++++++|++.|.|.
T Consensus 306 ~~i~~e~~~~v~~a~~~a~~~p~p~ 330 (341)
T CHL00149 306 NKIQREVKIEIEQAVQFAISSPEPN 330 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999988654
No 16
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=4.8e-57 Score=492.29 Aligned_cols=289 Identities=20% Similarity=0.180 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccc----cCCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHH
Q psy9579 147 ILFLLTAAEEFEHYLHNRYVGQKRFS----LEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKEL 222 (887)
Q Consensus 147 ~l~~M~~ar~fE~~l~~~~~~~krfg----~eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~i 222 (887)
+|+.|+++|.||+++.++|.++|..+ ..||||+++|+ +.+++++|++++ +||+|+++| ++|+|+.++
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~------~~~l~~~D~~~~-~yR~~~~~l--a~G~~~~~~ 71 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGV------AAALRPGDWVFP-TYRDHGHAL--ARGVDLKEM 71 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHH------HHHCCCCCEEEe-cchhHHHHH--HcCCCHHHH
Confidence 58999999999999999999998877 39999999999 999999999999 999999999 999999999
Q ss_pred HHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCc
Q psy9579 223 FDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDA 302 (887)
Q Consensus 223 f~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDg 302 (887)
|+|++|+.+++..+.+++.|++.. ...+.+..+++|.+.|+|+|+|+|.|+.+. +.++|+++|||
T Consensus 72 ~~e~~g~~~g~~~G~~g~~h~~~~----------~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~-----~~~vv~~~GDG 136 (293)
T cd02000 72 LAELFGKETGPCKGRGGSMHIGDK----------EKNFFGGNGIVGGQVPLAAGAALALKYRGE-----DRVAVCFFGDG 136 (293)
T ss_pred HHHHcCCCCCCCCCCCCCCCCCch----------hcCccccccccccchhHHHHHHHHHHHhCC-----CCEEEEEeCCC
Confidence 999999999853333566666432 113346668899999999999999999875 78999999999
Q ss_pred ccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9579 303 AFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVE 382 (887)
Q Consensus 303 A~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e 382 (887)
|+ +||.|+|+||+|+. |++| +||||+||+||++|+...+++..+++++|++||+|+++|||+|+++|+.+++.|++
T Consensus 137 a~-~~g~~~E~l~~A~~--~~lP-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~ 212 (293)
T cd02000 137 AT-NEGDFHEALNFAAL--WKLP-VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVE 212 (293)
T ss_pred cc-ccchHHHHHHHHHh--hCCC-EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 99 99999999999999 9999 99999999999999988777778999999999999999999999999999999999
Q ss_pred HHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9579 383 YRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSI 462 (887)
Q Consensus 383 ~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~ 462 (887)
++|++++|+|||++|||.+|||++|||++|+|..+.+.|+++||+.+|+++|+++|++|+++++++++++++++++++++
T Consensus 213 ~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~ 292 (293)
T cd02000 213 RARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEF 292 (293)
T ss_pred HHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888777777889999999999999999999999999999999999999876
Q ss_pred h
Q psy9579 463 V 463 (887)
Q Consensus 463 a 463 (887)
|
T Consensus 293 a 293 (293)
T cd02000 293 A 293 (293)
T ss_pred C
Confidence 4
No 17
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.6e-55 Score=489.15 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=273.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHH
Q psy9579 137 PNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLV 212 (887)
Q Consensus 137 ~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~ 212 (887)
+.+++++++++|+.|+++|.||+.+..+|.++|. |+ .||||+.+|+ +.+++++|++++ +||+|+++|
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~------~~al~~~D~~~~-~yR~h~~~l- 89 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGS------ALALRKDDWVFP-SYRDHAAML- 89 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHH------HHHcCCCCEEEc-chhhHHHHH-
Confidence 4689999999999999999999999999998886 54 9999999999 999999999999 999999999
Q ss_pred HHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCc
Q psy9579 213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQ 292 (887)
Q Consensus 213 n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~ 292 (887)
++|.++.++|+|++|+.+|. +. +..+.++...+.+|...|.|+|+|+|.|+.+. +
T Consensus 90 -~~G~~~~~~~ae~~g~~~g~------------~~-------~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~-----~ 144 (341)
T TIGR03181 90 -ARGVPLVEILLYWRGDERGS------------WD-------PEGVNILPPNIPIGTQYLHAAGVAYALKLRGE-----D 144 (341)
T ss_pred -HcCCCHHHHHHHhcCcCcCC------------CC-------chhcCccCCCchHhcchhHHHhHHHHHHhhCC-----C
Confidence 99999999999999998762 10 11122234557889999999999999999876 7
Q ss_pred eEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHH
Q psy9579 293 VLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPES 372 (887)
Q Consensus 293 ~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~A 372 (887)
.++||++||||+ ++|.|+|+||+|+. |++| +||||+||+|+++|+...+.+...++++|++||+|+++|||+|+++
T Consensus 145 ~~vv~~~GDGa~-~~g~~~EaL~tA~~--~~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~a 220 (341)
T TIGR03181 145 NVAVTYFGDGGT-SEGDFYEALNFAGV--FKAP-VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLA 220 (341)
T ss_pred CEEEEEecCCcc-ccChHHHHHHHHhc--cCCC-EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHH
Confidence 899999999999 99999999999999 9999 9999999999999987666566778999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy9579 373 VILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEF 452 (887)
Q Consensus 373 V~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~ 452 (887)
|+++++.|+++++++++|+|||+.|||++|||++|+|..|||.+|...|+++||+.+|+++|+++|++|+++++++++++
T Consensus 221 v~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~ 300 (341)
T TIGR03181 221 VYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEA 300 (341)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCC
Q psy9579 453 NDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 453 ~~~l~~a~~~a~~~~~~~ 470 (887)
++++++++++|++.|.|.
T Consensus 301 ~~~v~~a~~~a~~~p~P~ 318 (341)
T TIGR03181 301 EAEVAEAVAEALALPPPP 318 (341)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 999999999999988554
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=7.9e-50 Score=471.07 Aligned_cols=540 Identities=15% Similarity=0.115 Sum_probs=380.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHHHHHHHHHhhcCC---CCcEEe--cCCccchHHHHH
Q psy9579 138 NFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRG---IREIVI--GMAHRGRLNVLV 212 (887)
Q Consensus 138 ~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vgl~~~i~~a~al~---~~D~v~--gm~HRgr~~~L~ 212 (887)
.|+.+++.+ +-.-+|.+.++.- . ..++-..+..|+ +.+++ |.++. ++|+++ + .||++++.|
T Consensus 14 ~l~~~~l~~-l~~~ir~~~~~~~--~-~~~Gh~~~~lg~--vel~~------al~~~f~~~~D~ii~d~-ghr~~~~~l- 79 (581)
T PRK12315 14 KLSLDELEQ-LASEIRTALLEKD--S-AHGGHVGPNLGV--VELTI------ALHYVFNSPKDKIVWDV-SHQSYPHKM- 79 (581)
T ss_pred hCCHHHHHH-HHHHHHHHHHHHH--H-hcCCCcCcchhH--HHHHH------HHHhhcCCCCCcEEEec-CCchHHHHH-
Confidence 566555544 3334444444332 1 123333344777 44444 44555 789999 8 999999999
Q ss_pred HHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCc
Q psy9579 213 NILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQ 292 (887)
Q Consensus 213 n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~ 292 (887)
++|.++..++++.+|+.+| ++ ++.++..+. +..+|.++..|+|+|.|+|.++++. +
T Consensus 80 -~~G~~~~~~~~~~~g~~~G------------~~---~~~~s~~~~---~~~g~~~~~ls~A~G~A~A~k~~~~-----~ 135 (581)
T PRK12315 80 -LTGRKEAFLDPDHYDDVTG------------YT---NPEESEHDF---FTVGHTSTSIALATGLAKARDLKGE-----K 135 (581)
T ss_pred -HcCCccchhhHHHcCCCCC------------CC---CCCCCCCCC---cCCCcHHHHHHHHHHHHHHHHhcCC-----C
Confidence 9999999999999999887 34 233322333 4568889999999999999999876 7
Q ss_pred eEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCC---------cccCCcccccccccCCcEE
Q psy9579 293 VLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPND---------LRSTLYCTDIGKIIEAPVF 363 (887)
Q Consensus 293 ~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~---------~rss~~~sd~Ak~~giP~~ 363 (887)
..++|++|||++ .+|.+||+||+|+. |++| +|+||+||+|+++++... +.....+.+++++||++++
T Consensus 136 ~~vv~~iGDG~~-~eG~~~EAln~A~~--~k~~-li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~ 211 (581)
T PRK12315 136 GNIIAVIGDGSL-SGGLALEGLNNAAE--LKSN-LIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYR 211 (581)
T ss_pred CeEEEEECchhh-hcchHHHHHHHHHh--hCCC-EEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEE
Confidence 789999999999 99999999999999 9999 999999999999987642 2223345678999999999
Q ss_pred EE-cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCH
Q psy9579 364 HV-NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTK 442 (887)
Q Consensus 364 ~V-dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~ 442 (887)
.| ||+|+++++++++.| +++++|++|++.|||-.|.....+. +. .|...+|.. .
T Consensus 212 ~v~DG~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~~~~~~----~~----~~h~~~~f~-------------~ 266 (581)
T PRK12315 212 YVEDGNDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQPAEEN----KE----AFHWHMPFD-------------L 266 (581)
T ss_pred EeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCChhhcC----HH----hcCCCCCCC-------------c
Confidence 99 999999999999886 4578999999999999995421100 11 121111100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHH
Q psy9579 443 NESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKK 522 (887)
Q Consensus 443 ~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~ 522 (887)
+. .. . ....|+ .+ .
T Consensus 267 ~~----------------------~~-~----~~~~~~--------------~~-----------------------~-- 280 (581)
T PRK12315 267 ET----------------------GQ-S----KVPASG--------------ES-----------------------Y-- 280 (581)
T ss_pred cc----------------------Cc-c----cCCCCC--------------cC-----------------------H--
Confidence 00 00 0 000000 00 0
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCcccc
Q psy9579 523 ILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKN 602 (887)
Q Consensus 523 ~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~ 602 (887)
|. ++.++ +..++.++++|.+.++|...+ ++ ++.+.++
T Consensus 281 ----~~-----------~~~~~--l~~~~~~d~~i~~i~~~~~~~---------------------~~-----~~~f~~~ 317 (581)
T PRK12315 281 ----SS-----------VTLDY--LLKKIKEGKPVVAINAAIPGV---------------------FG-----LKEFRKK 317 (581)
T ss_pred ----HH-----------HHHHH--HHHHhccCCCEEEEeCccccc---------------------cC-----cHHHHHh
Confidence 00 01111 233567899999999998643 12 3466677
Q ss_pred CCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccC-CCCCc
Q psy9579 603 QAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY-EGQGP 681 (887)
Q Consensus 603 ~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~-~g~Gp 681 (887)
| +.|++|++|+|.+++|++.|+|+.|.+ ||+ ++|.+|...| +||+++.. ++. ..+++++.+|+. .+.||
T Consensus 318 f-P~R~id~GIaEq~~v~~AaGlA~~G~~--Pvv-~~fs~Fl~ra---~dQi~~d~-a~~--~lpv~~~~~~~g~~~dG~ 387 (581)
T PRK12315 318 Y-PDQYVDVGIAEQESVAFASGIAANGAR--PVI-FVNSTFLQRA---YDQLSHDL-AIN--NNPAVMIVFGGSISGNDV 387 (581)
T ss_pred c-cccccCCCchHHHHHHHHHHHHHCcCe--EEE-EeeHHHHHHH---HHHHHHHH-Hhc--CCCEEEEEECCcccCCCc
Confidence 7 689999999999999999999999976 677 9999999655 99998763 332 479999999864 44799
Q ss_pred cccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccc
Q psy9579 682 EHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEID 761 (887)
Q Consensus 682 eHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~ 761 (887)
.|+..--..+| ...|||+|+.|++|.++.++|+.++..+ ..|++|.+||..+...... .++|..+ .+.
T Consensus 388 TH~~~~Dia~l--r~iPnl~V~~P~d~~e~~~~l~~a~~~~-~gP~~ir~~r~~~~~~~~~--~~~~~~~-------k~~ 455 (581)
T PRK12315 388 THLGIFDIPMI--SNIPNLVYLAPTTKEELIAMLEWALTQH-EHPVAIRVPEHGVESGPTV--DTDYSTL-------KYE 455 (581)
T ss_pred cccccHHHHHH--hcCCCCEEEecCCHHHHHHHHHHHHhCC-CCcEEEEEcCCccCCCCCC--ccCcccc-------eEE
Confidence 99975333666 5778999999999999999999998752 2899999999988643211 1223222 233
Q ss_pred cccCCCCceEEEEEechHHHHHHHHHHHc--C-CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchH
Q psy9579 762 DIIDPKKIKRIIACSGKIYYDLFNFRKKK--N-KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWP 838 (887)
Q Consensus 762 ~~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~-~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~ 838 (887)
++++++++ +|+|+|.+.+..+++++++ . .+++.||++++|.|||.+++.... ++.+. +|.++|....+|+++
T Consensus 456 v~~~g~dv--tiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~-~~~~~--vvtvEe~~~~GG~gs 530 (581)
T PRK12315 456 VTKAGEKV--AILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLK-EDHEL--VVTLEDGILDGGFGE 530 (581)
T ss_pred EEecCCCE--EEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHH-hhCCE--EEEEcCCCcCCCHHH
Confidence 34567766 8999999877777776643 1 369999999999999999975554 54442 566676688899999
Q ss_pred HHHHHHHHhhccCCcEEEecCCCCCCCCCCch----hhHHHHHHHHHHHh
Q psy9579 839 QIKENILKYLNSTQKLIYVGRSCSASPASGYY----SKHCKEQITLLNNA 884 (887)
Q Consensus 839 ~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g~~----~~h~~~~~~i~~~a 884 (887)
.|...+.+. ..+++..|=+..-.. .|.. +.+--..+.|++.+
T Consensus 531 ~v~~~l~~~---~~~~~~~gi~d~f~~-~g~~~~l~~~~Gl~~~~I~~~i 576 (581)
T PRK12315 531 KIARYYGNS---DMKVLNYGAKKEFND-RVPVEELYKRNHLTPEQIVEDI 576 (581)
T ss_pred HHHHHHHcC---CCeEEEecCCCCCCC-CCCHHHHHHHHCcCHHHHHHHH
Confidence 999888764 235677776553222 2333 33333455665544
No 19
>KOG1182|consensus
Probab=100.00 E-value=4.7e-51 Score=428.44 Aligned_cols=340 Identities=16% Similarity=0.174 Sum_probs=296.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHH
Q psy9579 136 TPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVL 211 (887)
Q Consensus 136 ~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L 211 (887)
.+.++.|..+++|+.|+.....|+.+-.- ..|.|.|+ .|.||+-+|. |++|.++|+|+| .||.-+.+|
T Consensus 80 dp~~~ee~~~kmy~~M~~Ln~MD~IlYes-QRQGRiSFYmT~~GEEa~higS------AAAL~p~Dli~g-QYREaGVLl 151 (432)
T KOG1182|consen 80 DPQLSEEVVLKMYKDMTLLNIMDRILYES-QRQGRISFYMTNFGEEAIHIGS------AAALEPQDLIYG-QYREAGVLL 151 (432)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHH-hhcceEEEEEeccchhhhhhhh------hhhCCccccccc-ccccCceEE
Confidence 57899999999999999999999988664 45678787 9999999999 999999999999 999999999
Q ss_pred HHHhCCCHHHHHHHccCCCCCCCCCC-CcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCC
Q psy9579 212 VNILGKKPKELFDEFEDKNSENLLSG-DVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFG 290 (887)
Q Consensus 212 ~n~~G~~~~~if~e~~G~~~~~~~~G-DvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~ 290 (887)
.+|.+++.++.+.+|+..+ .+.| +||.|+|+. ..|. +.-.|+|.++.|.|+|+|+|.|++.+
T Consensus 152 --wRgftle~f~~qCyGn~~d-~gkGrQMPvHyGs~--------elnf--~tissplatqlpqAvGaaYa~k~~~~---- 214 (432)
T KOG1182|consen 152 --WRGFTLEEFMNQCYGNKSD-LGKGRQMPVHYGSK--------ELNF--VTISSPLATQLPQAVGAAYALKMRKK---- 214 (432)
T ss_pred --EcCccHHHHHHHhcCCccc-cccccccccccCcc--------ccce--EEecchhhhccchhhhhhhhhhhccc----
Confidence 9999999999999998765 4566 899999866 1222 34468999999999999999998876
Q ss_pred CceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCH
Q psy9579 291 TQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDP 370 (887)
Q Consensus 291 ~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~ 370 (887)
.+.++||+|||||+ ++|++|-++|||++ ...| +||||-||+|+||||.++|..+.-+.-++.+|||..|+|||||+
T Consensus 215 nnac~V~yfGdG~a-SEGD~HA~~NfAAt--le~P-vif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~ 290 (432)
T KOG1182|consen 215 NNACAVTYFGDGAA-SEGDAHAAFNFAAT--LECP-VIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDA 290 (432)
T ss_pred CCeEEEEEecCCcc-cccchhhhhhHHHH--hCCC-EEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcch
Confidence 36899999999999 99999999999999 9999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHh-hCCCHHHHHHHHHHHcCCCCHHHHHHHH
Q psy9579 371 ESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIF-KHPGIRELYSNKLKIQKILTKNESENMI 449 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~-~~~dpi~~y~~~Li~~Gi~t~~e~~~i~ 449 (887)
+|||.|++.|.+++-+.++|||||++|||.+.||++||.+-|++...-.+| +.+.|+.+|++++.++|.|+++...+++
T Consensus 291 lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~r 370 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELR 370 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHH
Confidence 999999999999999999999999999999999999999877777655555 5679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCC
Q psy9579 450 KEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGF 514 (887)
Q Consensus 450 ~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f 514 (887)
++++++|-++++.|++.+.+. +...++++.. . .|.. -.++-..|.+++.+.|+++
T Consensus 371 k~~rk~vl~a~~~aEk~~K~~----~~~lF~dVYd----~-~P~~-L~eq~~~l~~~i~~~~e~Y 425 (432)
T KOG1182|consen 371 KNIRKKVLEAIAAAEKKEKPN----LTELFEDVYD----E-MPKN-LREQELELKEHIEKHPEHY 425 (432)
T ss_pred HHHHHHHHHHHHHHhcccCCC----HHHHHHHHhh----h-hhHh-HHHHHHHHHHHHHhCcccC
Confidence 999999999999999877554 2334444432 1 1111 2344456777777777765
No 20
>KOG0525|consensus
Probab=100.00 E-value=5e-49 Score=401.38 Aligned_cols=287 Identities=21% Similarity=0.301 Sum_probs=245.7
Q ss_pred hhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCC
Q psy9579 551 VISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASP 630 (887)
Q Consensus 551 l~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~ 630 (887)
|+-|++-.++||||+- ||+|+=+-+|.++||+.||+||||.|.+|+||.+|.|..|.
T Consensus 55 l~tdp~a~vfgedv~f-----------------------ggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~ 111 (362)
T KOG0525|consen 55 LETDPRAVVFGEDVAF-----------------------GGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGA 111 (362)
T ss_pred hhcCCceEEecccccc-----------------------ceEEEeecchHHHhCccccccCchhhcccceechhhhhccc
Confidence 5678999999999995 46777778999999999999999999999999999999998
Q ss_pred CCceEEeeeccccccchhHHHHHHHhhHHHHhcCccC-------cEEEecccCCCCCccccCchHHHHHhhhcCCCcEEE
Q psy9579 631 NTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISG-------LTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIV 703 (887)
Q Consensus 631 ~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sg-------lv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~ 703 (887)
+ .|.|+||+||+.+| |||+++. .+|++++|| |++|.|-|.-|.|.--||++.|.|| |+.||++||
T Consensus 112 ~--aiaeiqfadyifpa---fdqivne-aakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff--~h~pgikvv 183 (362)
T KOG0525|consen 112 T--AIAEIQFADYIFPA---FDQIVNE-AAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFF--CHVPGIKVV 183 (362)
T ss_pred c--eEEEEeeccccchh---HHHHHHH-HHhheeccCCccccCceEEeccccccccccccccCCchhhe--ecCCCceEE
Confidence 7 69999999999998 9999988 699999886 9999999998887644445599999 566799999
Q ss_pred cCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEech-HHHH
Q psy9579 704 QPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGK-IYYD 782 (887)
Q Consensus 704 ~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~-~~~~ 782 (887)
+|-+|-|+++||.+.|+++ +|+||||||+|||.. .+|.+.+-|..++.++.++++++|+ |++.||. ++..
T Consensus 184 iprsp~qakglllscirdp--np~iffepk~lyr~a-----~edvp~~dy~iplsqaevireg~di--tlv~wgtqvh~i 254 (362)
T KOG0525|consen 184 IPRSPRQAKGLLLSCIRDP--NPCIFFEPKILYRQA-----VEDVPEGDYMIPLSQAEVIREGSDI--TLVAWGTQVHVI 254 (362)
T ss_pred ecCCcchhhceeeeeccCC--CceEEechHHHHHHh-----hhhCCCCCccccccHHHHhhcCCce--EEEEcchhhHHH
Confidence 9999999999999999988 999999999999863 3567778888999999999999998 7999999 4444
Q ss_pred HHHH---HHHcCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhc--cCCcE-EE
Q psy9579 783 LFNF---RKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLN--STQKL-IY 856 (887)
Q Consensus 783 l~~~---~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~--~~~~~-~~ 856 (887)
+++| ++++| +++|||||++|-|||.|+|.+||+||+| +++.||.|-++|++++|.+.+++.+. ..+|+ |.
T Consensus 255 ~e~a~l~~ek~g-iscevidlkti~pwd~d~v~~sv~ktgr---llisheapvtggfgaeiastv~ercfl~leapisrv 330 (362)
T KOG0525|consen 255 MEQACLAKEKLG-ISCEVIDLKTIIPWDKDTVEESVQKTGR---LLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRV 330 (362)
T ss_pred HHHHHhhHHhcC-CceEEEeeecccCccHHHHHHHHHhhce---EEEeccCCccCcchHHHHHHHHHHHHhhccCchhhh
Confidence 4443 23455 6999999999999999999999999999 79999999999999999999998744 23444 55
Q ss_pred ecCCCCCCCCCCchhhHHHHHHHHHHH
Q psy9579 857 VGRSCSASPASGYYSKHCKEQITLLNN 883 (887)
Q Consensus 857 ~gr~~~~~~a~g~~~~h~~~~~~i~~~ 883 (887)
+|-+.+ ...-++..+.+...++++.
T Consensus 331 cg~dtp--fp~vfepfy~ptk~ki~da 355 (362)
T KOG0525|consen 331 CGLDTP--FPHVFEPFYMPTKNKILDA 355 (362)
T ss_pred ccCCCC--CcccccccccCcHhHHHHH
Confidence 666652 2355677777888887764
No 21
>KOG0524|consensus
Probab=100.00 E-value=2.5e-47 Score=394.39 Aligned_cols=303 Identities=17% Similarity=0.189 Sum_probs=263.9
Q ss_pred cccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccch
Q psy9579 536 NVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSE 615 (887)
Q Consensus 536 ~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE 615 (887)
.++-||.|. |.+|++|+|+||||+. .+|.|+.++||.++||+.||+||||+|
T Consensus 40 ALn~amdEE------m~rD~~VfvmGEeV~q----------------------y~GaykvtkGL~~K~G~~RV~DTPItE 91 (359)
T KOG0524|consen 40 ALNQAMDEE------MDRDPRVFVMGEEVGQ----------------------YGGAYKVTKGLLDKFGDKRVLDTPITE 91 (359)
T ss_pred HHHHHHHHH------hccCCcEEEechhhhh----------------------cCCeeehhhhHHHhcCCceeecCcchh
Confidence 356666664 7899999999999996 678889999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccC------cEEEecccC-CCCCccccCchH
Q psy9579 616 EAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISG------LTLMLPHGY-EGQGPEHSSARL 688 (887)
Q Consensus 616 ~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sg------lv~~lP~G~-~g~GpeHSs~r~ 688 (887)
.++.|.++|+|+.|.| ||+|.|--.|+.-| |||+||| .+|-.|||| +|+|-|.|. .|-|++|||+ .
T Consensus 92 ~gFtG~avGAA~~GLr--Pi~efMtfnFsmqA---id~IiNs-aakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~-f 164 (359)
T KOG0524|consen 92 MGFTGIAVGAAMAGLR--PICEFMTFNFSMQA---IDQIINS-AAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQD-F 164 (359)
T ss_pred cccchhhHhHHHhCcc--hhhhhhcchhHHHH---HHHHHHH-HHHHhcccCCceeccEEEeCCCCcccchhhhhhhh-h
Confidence 9999999999999998 69999999999876 9999998 589999886 999999997 4678999976 9
Q ss_pred HHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCC
Q psy9579 689 ERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKK 768 (887)
Q Consensus 689 Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~ 768 (887)
+.|++.| |||+||.|.||.|+++||+.+||++ +||||||+..||..+...+. +.+ ...|..+++++.+.|++++
T Consensus 165 ~~wy~si--PGlkvvapysaedakGLlKaAIRd~--NPVV~lEnelLYg~~f~i~~-E~l-s~~fv~p~gkAkier~G~~ 238 (359)
T KOG0524|consen 165 ASWYGSI--PGLKVVAPYSAEDAKGLLKAAIRDE--NPVVFLENELLYGLSFEIPE-EAL-SKDFVLPLGKAKIEREGTH 238 (359)
T ss_pred HHHhccC--CCceEeccCChhhhhhHHHHhccCC--CCeEEEechhhcCCCccCCh-hhc-CcceeeeccceeeeecCCc
Confidence 9999877 5999999999999999999999988 99999999999988766532 222 2348889999988789999
Q ss_pred ceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHH
Q psy9579 769 IKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILK 846 (887)
Q Consensus 769 v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~ 846 (887)
| ||+++.++.+-+++|++.+ ..++.|||+||+|.|||.++|.+|++||.+ +|.|+|.....|.+++|.++|.|
T Consensus 239 i--Tivt~Sr~v~~~leAA~~L~~~Gvs~EVInlrSirP~D~~tI~~Sv~KT~~---lvtVe~~~p~~gigaei~A~i~E 313 (359)
T KOG0524|consen 239 I--TIVTYSRMVGHCLEAAETLVAKGVSAEVINLRSIRPFDIETIGASVKKTNR---LVTVEEGWPQFGIGAEICAQIME 313 (359)
T ss_pred e--EEEEechhHHHHHHHHHHHHhcCCCceeEeeeccCcccHHHHHHHHhhhce---EEEEeccccccchhHHHHHHHHH
Confidence 8 7999999555555555432 237999999999999999999999999998 79999999999999999999988
Q ss_pred hhc---cCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHh
Q psy9579 847 YLN---STQKLIYVGRSCSASPASGYYSKHCKEQITLLNNA 884 (887)
Q Consensus 847 ~~~---~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a 884 (887)
.+. +.+..|..|.+.+.|+|.-++....++.+.|+..+
T Consensus 314 ~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p~~~~iV~Av 354 (359)
T KOG0524|consen 314 NAFDYLDAPVQRVTGADVPTPYAKTLEDWAVPQPADIVTAV 354 (359)
T ss_pred HHHhhhcchhhhhcCCCCCCccchhhHhhcCCCHHHHHHHH
Confidence 644 34557888999999999999999999999988764
No 22
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=3.6e-43 Score=416.92 Aligned_cols=434 Identities=16% Similarity=0.168 Sum_probs=320.0
Q ss_pred cCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS 341 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~ 341 (887)
.++.|++...|+|+|+|+|.++++. +..++|++|||++ ++|.+||+||+|+. |++| .|+||+||+++++++
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~~~~-----~~~v~~~~GDG~~-~eG~~~Ea~~~a~~--~~l~-~i~ii~~N~~~i~~~ 178 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEKKGA-----DRKTVCVIGDGAI-TAGMAFEALNHAGD--LKTD-MIVILNDNEMSISEN 178 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHhhCC-----CCEEEEEECCccc-ccccHHHHHHHHHh--cCCC-EEEEEECCCcccCCC
Confidence 4667899999999999999999876 7899999999999 99999999999999 9999 899999999999998
Q ss_pred CCCccc-------C-----------------C---c-cccc--------------ccccCCcEE-EEcCCCHHHHHHHHH
Q psy9579 342 PNDLRS-------T-----------------L---Y-CTDI--------------GKIIEAPVF-HVNGDDPESVILVTK 378 (887)
Q Consensus 342 ~~~~rs-------s-----------------~---~-~sd~--------------Ak~~giP~~-~VdG~D~~AV~~a~~ 378 (887)
...... + + . +.++ .+++|+-++ .|||+|+++++.+.+
T Consensus 179 ~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~ 258 (617)
T TIGR00204 179 VGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLK 258 (617)
T ss_pred chHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHH
Confidence 753311 0 0 0 2222 567899998 899999999999887
Q ss_pred HHHHHHHccCCcEEEEEEeeecCCCCCCC-CCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy9579 379 IAVEYRMKFKKDCIINIICFRKLGHNEQD-TPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMIN 457 (887)
Q Consensus 379 ~A~e~~r~~~~PvlIe~vtYR~~GHne~D-dP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~ 457 (887)
.| ++.++|++|++.|.+-.|-...- + |..|... ...|+ +.|
T Consensus 259 ~a----k~~~~P~~i~~~T~KGkG~~~~e~~-----~~~~H~~-~~~~~---------~~~------------------- 300 (617)
T TIGR00204 259 NA----KKLKGPVFLHIQTKKGKGYKPAEKD-----PIGWHGV-GPFDL---------STG------------------- 300 (617)
T ss_pred HH----hcCCCCEEEEEEecCCCCCchhhcC-----hhhccCC-CCCCh---------hhC-------------------
Confidence 44 45578999999999998843321 1 1111100 00000 000
Q ss_pred HHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcc
Q psy9579 458 SGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNV 537 (887)
Q Consensus 458 ~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~i 537 (887)
.++ . +. ++..+ .
T Consensus 301 --------~~~-~--------~~-----------~~~~~----------------------------------------~ 312 (617)
T TIGR00204 301 --------CLP-K--------SK-----------SALPS----------------------------------------Y 312 (617)
T ss_pred --------CcC-C--------CC-----------CCCcc----------------------------------------H
Confidence 000 0 00 00000 0
Q ss_pred cHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHH
Q psy9579 538 DWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEA 617 (887)
Q Consensus 538 dw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~a 617 (887)
..++.++| ..+++++++|++.+.|...| ++ ++++.++| +.|++|+||+|++
T Consensus 313 ~~a~~~~L--~~~~~~d~~iv~i~ad~~~~---------------------~~-----~~~f~~~f-P~R~~d~GIaEq~ 363 (617)
T TIGR00204 313 SKIFSDTL--CELAKKDNKIVGITPAMPEG---------------------SG-----LDKFSRKF-PDRYFDVAIAEQH 363 (617)
T ss_pred HHHHHHHH--HHHHhhCcCEEEEECCccCC---------------------cC-----hHHHHHHC-ccccccCCccHHH
Confidence 01122222 23567889999988887543 22 45788888 8999999999999
Q ss_pred HHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cCCCC-CccccCchHH-HHHhh
Q psy9579 618 ILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GYEGQ-GPEHSSARLE-RFLQL 694 (887)
Q Consensus 618 ilG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~~g~-GpeHSs~r~E-r~lq~ 694 (887)
++|++.|+|+.|.+ ||+++ |++|+.-| +||+++.. +++ ..+++++.+| |+.|. ||.||+. .+ .+|
T Consensus 364 ~vg~AaGlA~~G~~--Pvv~~-~a~Fl~ra---~dQi~~~~-a~~--~lpV~i~~~~~G~~g~dG~tH~~~-~dia~l-- 431 (617)
T TIGR00204 364 AVTFAAGMAIEGYK--PFVAI-YSTFLQRA---YDQVVHDV-CIQ--KLPVLFAIDRAGIVGADGETHQGA-FDISYL-- 431 (617)
T ss_pred HHHHHHHHHHCCCE--EEEEe-cHHHHHHH---HHHHHHHH-Hhc--CCCEEEEEECCCcCCCCCcccccc-hHHHHH--
Confidence 99999999999976 79999 99999655 99998763 443 4789999996 56555 8999975 44 555
Q ss_pred hcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEE
Q psy9579 695 CANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIA 774 (887)
Q Consensus 695 ~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~ 774 (887)
.+.|||+|+.|++|.|+.++|+.++..+ ..|++|..||..+...... ++.+..+++.+.++++++++ +|+
T Consensus 432 r~iPgl~V~~Psd~~e~~~~l~~a~~~~-~~Pv~ir~~r~~~~~~~~~-------~~~~~~~~Gk~~vlr~G~dv--tIv 501 (617)
T TIGR00204 432 RCIPNMVIMAPSDENELRQMLYTGYHYD-DGPIAVRYPRGNAVGVELT-------PEPEKLPIGKSEVLRKGEKI--LIL 501 (617)
T ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHhCC-CCCEEEEEccCCcCCcccC-------CccccccCCceEEEEcCCCE--EEE
Confidence 6778999999999999999999998742 3899999999876321110 11111233444445567777 899
Q ss_pred EechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCC
Q psy9579 775 CSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQ 852 (887)
Q Consensus 775 ~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~ 852 (887)
++|.+.+..++|++++ ..++++||++++|.|||.++|.++++||++ +|+|+|....+|+++.|.+.+.+... ..
T Consensus 502 a~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~---vvtvEE~~~~GGlGs~v~~~l~~~~~-~~ 577 (617)
T TIGR00204 502 GFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEK---LVTVEENAIMGGAGSAVLEFLMDQNK-LV 577 (617)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCe---EEEEECCCCccChHHHHHHHHHhcCC-CC
Confidence 9999888887776543 237999999999999999999999999998 79999999999999999999988621 24
Q ss_pred cEEEecCCCCCCC
Q psy9579 853 KLIYVGRSCSASP 865 (887)
Q Consensus 853 ~~~~~gr~~~~~~ 865 (887)
+++.+|-+....|
T Consensus 578 ~v~~ig~~d~~~~ 590 (617)
T TIGR00204 578 PVKRLGIPDFFIP 590 (617)
T ss_pred CeEEEeCCCcCcC
Confidence 6667776554444
No 23
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.6e-40 Score=392.95 Aligned_cols=453 Identities=17% Similarity=0.196 Sum_probs=330.2
Q ss_pred cCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS 341 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~ 341 (887)
....|+|...|+|+|+|+|.++.+. .+..++|++|||++ .+|.+||+|++|+. |++| +|+||.||+|+++++
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~----~~~~v~~i~GDG~l-~eG~~~Eal~~A~~--~~~n-li~IvdnN~~~i~~~ 185 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGG----EDRKVVAVIGDGAL-TGGMAFEALNNAGD--LKSD-LIVILNDNEMSISPN 185 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCC----CCCeEEEEEccccc-ccCHHHHHHHHHHh--hCCC-EEEEEECCCCcCCCc
Confidence 3457899999999999999998832 25689999999999 99999999999999 9999 999999999999988
Q ss_pred CCCcc---cCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCC-CCCCCChHh
Q psy9579 342 PNDLR---STLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQD-TPSLTQPLM 416 (887)
Q Consensus 342 ~~~~r---ss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~D-dP~~tqp~~ 416 (887)
..... ......+++++||++++ .|||+|+++++.+.+.|. +.++|++|++.|+|-.|.+... +| ..
T Consensus 186 ~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~T~kg~G~~~~e~~~-----~~ 256 (580)
T PRK05444 186 VGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK----DLKGPVLLHVVTKKGKGYAPAEADP-----IK 256 (580)
T ss_pred chhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEecCCcCCChhhcCc-----cc
Confidence 75432 22455678999999999 599999999998877554 4579999999999999965332 12 11
Q ss_pred hHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccC
Q psy9579 417 YKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSIS 496 (887)
Q Consensus 417 Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~ 496 (887)
+ |..| ..+++ . .....+. ...
T Consensus 257 ~-----h~~~------------~~~~~-~------------------~~~~~~~----------------------~~~- 277 (580)
T PRK05444 257 Y-----HGVG------------KFDPE-T------------------GEQPKSS----------------------KPG- 277 (580)
T ss_pred c-----CCCC------------CCCcc-c------------------CCccccC----------------------CCC-
Confidence 1 1111 00000 0 0000000 000
Q ss_pred HHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceee
Q psy9579 497 LEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAIL 576 (887)
Q Consensus 497 ~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~ 576 (887)
..+|..+=.-+...+++++++|.+.+.|...|+
T Consensus 278 ---------------------------------------~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~-------- 310 (580)
T PRK05444 278 ---------------------------------------KPSYTKVFGETLCELAEKDPKIVAITAAMPEGT-------- 310 (580)
T ss_pred ---------------------------------------cccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC--------
Confidence 000100001122335778999999999976432
Q ss_pred eccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHh
Q psy9579 577 YNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFIS 656 (887)
Q Consensus 577 ~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~ 656 (887)
+ +..+.++| +.|++|++|+|.+++|++.|+|+.|.+ ||++. |.+|+.- ++||+++
T Consensus 311 -------------~-----~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~--p~~~~-f~~F~~r---a~dQi~~ 365 (580)
T PRK05444 311 -------------G-----LVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLK--PVVAI-YSTFLQR---AYDQVIH 365 (580)
T ss_pred -------------C-----HHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCe--eEEEe-eHHHHHH---HHHHHHH
Confidence 1 12355666 789999999999999999999999975 79999 9999965 5999887
Q ss_pred hHHHHhcCccCcEEEecc-cCCCC-CccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEcccc
Q psy9579 657 SSEEKWGRISGLTLMLPH-GYEGQ-GPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKS 734 (887)
Q Consensus 657 ~~~~kw~~~sglv~~lP~-G~~g~-GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~ 734 (887)
.. ++ ...+++++.+| |+.|. ||.||+. |-.-.+.+.|||+|+.|++|.|+..+|+.++..+ .+|++|..||.
T Consensus 366 ~~-a~--~~~pv~~v~~~~G~~g~dG~tH~~~--edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~-~~P~~ir~~r~ 439 (580)
T PRK05444 366 DV-AL--QNLPVTFAIDRAGLVGADGPTHQGA--FDLSYLRCIPNMVIMAPSDENELRQMLYTALAYD-DGPIAIRYPRG 439 (580)
T ss_pred Hh-hh--cCCCEEEEEeCCCcCCCCCcccccc--HHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC-CCcEEEEecCC
Confidence 63 33 34899999997 55554 8999974 5333347889999999999999999999999652 39999999998
Q ss_pred ccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHH
Q psy9579 735 LLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKI 814 (887)
Q Consensus 735 Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~ 814 (887)
++.... .....++. ++...++++++++ +|+|+|.+.+.+++|++++. ++.||++++|.|||.+.|.++
T Consensus 440 ~~~~~~-~~~~~~~~-------~Gk~~vl~~G~dv--tIia~G~~v~~al~Aa~~L~--~~~VId~~~i~p~D~~~i~~~ 507 (580)
T PRK05444 440 NGVGVE-LPELEPLP-------IGKGEVLREGEDV--AILAFGTMLAEALKAAERLA--SATVVDARFVKPLDEELLLEL 507 (580)
T ss_pred CCCCCC-CCCccccc-------CCceEEEEcCCCE--EEEEccHHHHHHHHHHHHhC--CCEEEEeCcCCccCHHHHHHH
Confidence 874211 11111222 3444444567766 89999998888888877765 899999999999999999999
Q ss_pred HHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCCCCC----chhhHHHHHHHHHHHhh
Q psy9579 815 LKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASG----YYSKHCKEQITLLNNAF 885 (887)
Q Consensus 815 ~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g----~~~~h~~~~~~i~~~a~ 885 (887)
+++|++ +|.++|...++|+|++|...+.+... ..+++.+|-+....+ .| +.+.+....++|++.+.
T Consensus 508 ~~~~~~---vv~vEe~~~~gG~g~~va~~l~~~~~-~~~v~~ig~~d~f~~-~g~~~~l~~~~gl~~~~I~~~i~ 577 (580)
T PRK05444 508 AAKHDL---VVTVEEGAIMGGFGSAVLEFLADHGL-DVPVLNLGLPDEFID-HGSREELLAELGLDAEGIARRIL 577 (580)
T ss_pred HhcCCe---EEEEECCCCCCCHHHHHHHHHHhhcC-CCCEEEEecCCcCCC-CCCHHHHHHHHCcCHHHHHHHHH
Confidence 999977 79999999999999999999988532 246677776543333 23 34555556677776653
No 24
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.2e-37 Score=371.07 Aligned_cols=447 Identities=15% Similarity=0.121 Sum_probs=316.6
Q ss_pred cccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC------
Q psy9579 270 INPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN------ 343 (887)
Q Consensus 270 v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~------ 343 (887)
..++++|.|.|.++... +..++|++|||++ .+|.+||+||+|+. |++| +|+||.||++.++++..
T Consensus 124 slg~a~G~A~a~~~~~~-----~~~v~~v~GDG~~-~eG~~~Eal~~a~~--~~~~-li~I~dnN~~~i~~~~~~~~~~l 194 (641)
T PRK12571 124 SISAALGFAKARALGQP-----DGDVVAVIGDGSL-TAGMAYEALNNAGA--ADRR-LIVILNDNEMSIAPPVGALAAYL 194 (641)
T ss_pred hHHHHHHHHHHHHHhCC-----CCeEEEEEeCchh-hcchHHHHHHHHHH--hCCC-EEEEEECCCeeecCCccHHHHHH
Confidence 35889999999998865 6789999999999 99999999999999 9999 99999999999999874
Q ss_pred -CcccC-Cc----------------------------------ccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHc
Q psy9579 344 -DLRST-LY----------------------------------CTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMK 386 (887)
Q Consensus 344 -~~rss-~~----------------------------------~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~ 386 (887)
+.+.. .| ..++-+++|+-++ .|||+|++++..|.+.|-+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~--- 271 (641)
T PRK12571 195 STLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR--- 271 (641)
T ss_pred HHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---
Confidence 32222 12 1478889999999 79999999999998876532
Q ss_pred cCCcEEEEEEeeecCCCCCCCC-CCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9579 387 FKKDCIINIICFRKLGHNEQDT-PSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNS 465 (887)
Q Consensus 387 ~~~PvlIe~vtYR~~GHne~Dd-P~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~ 465 (887)
.++|++|.+.|-.-.|-+..-+ | .. .|.-|.
T Consensus 272 ~~~P~~I~~~T~kGkG~~~~e~~~-----~~-----~Hg~~~-------------------------------------- 303 (641)
T PRK12571 272 ADGPVLVHVVTEKGRGYAPAEADE-----DK-----YHAVGK-------------------------------------- 303 (641)
T ss_pred CCCCEEEEEEecCccCcchhhcCC-----Cc-----ccCCCC--------------------------------------
Confidence 3789999999988788653221 2 11 111110
Q ss_pred CCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHH
Q psy9579 466 IPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHL 545 (887)
Q Consensus 466 ~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~l 545 (887)
..... . . . . ..... .+..+. ++.+
T Consensus 304 f~~~~-~-------~-~-~------~~~~~---------------------~~~~~~-----------------~f~~-- 327 (641)
T PRK12571 304 FDVVT-G-------L-Q-K------KSAPS---------------------APSYTS-----------------VFGE-- 327 (641)
T ss_pred cCCCC-C-------c-c-c------CCCcc---------------------chhHHH-----------------HHHH--
Confidence 00000 0 0 0 0 00000 000000 1111
Q ss_pred HHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhh
Q psy9579 546 AYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGF 625 (887)
Q Consensus 546 A~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~ 625 (887)
++..+++.+++|.+.+.|...|+ + ++++.++| +.|++|++|+|.+++|++.|+
T Consensus 328 ~L~~la~~d~~iv~isadl~~~~---------------------~-----~~~f~~~~-p~R~id~GIaE~~mvg~AaGl 380 (641)
T PRK12571 328 ELTKEAAEDSDIVAITAAMPLGT---------------------G-----LDKLQKRF-PNRVFDVGIAEQHAVTFAAGL 380 (641)
T ss_pred HHHHHHhhCCCEEEEeCCccCCC---------------------C-----hHHHHHhC-CCcccccCccHHHHHHHHHHH
Confidence 22235778999999999986542 1 24666777 789999999999999999999
Q ss_pred ccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEe-cccCCCC-CccccCchHHHHHhhhcCCCcEEE
Q psy9579 626 STASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLML-PHGYEGQ-GPEHSSARLERFLQLCANNNIQIV 703 (887)
Q Consensus 626 a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~l-P~G~~g~-GpeHSs~r~Er~lq~~~~~nl~V~ 703 (887)
|+.|.+ ||++. |.+|+.- ++||++... +. ...+++++. ..|+.|. ||.||+.--..+| ...|||+|+
T Consensus 381 A~~G~~--P~v~~-f~~Fl~r---a~dQI~~~~-a~--~~lpv~~v~~~~G~~g~dG~THq~~~dia~l--r~iPnl~V~ 449 (641)
T PRK12571 381 AAAGLK--PFCAV-YSTFLQR---GYDQLLHDV-AL--QNLPVRFVLDRAGLVGADGATHAGAFDLAFL--TNLPNMTVM 449 (641)
T ss_pred HHCCCE--EEEEe-hHHHHHH---HHHHHHHHH-hh--cCCCeEEEEECCCcCCCCCccccccHHHHHH--hcCCCCEEE
Confidence 999886 79999 9999965 499987753 33 236788877 4565554 9999986333666 567899999
Q ss_pred cCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHH
Q psy9579 704 QPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDL 783 (887)
Q Consensus 704 ~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l 783 (887)
.|++|.+++++|+.++..+ ..|++|..||..+.... ++...+...++++.++++++++ +|||||.+.+.+
T Consensus 450 ~Psd~~e~~~~l~~a~~~~-~~P~~ir~~r~~~~~~~-------~~~~~~~~~~gk~~vlr~G~di--tIva~G~~v~~a 519 (641)
T PRK12571 450 APRDEAELRHMLRTAAAHD-DGPIAVRFPRGEGVGVE-------IPAEGTILGIGKGRVPREGPDV--AILSVGAHLHEC 519 (641)
T ss_pred eeCCHHHHHHHHHHHHhCC-CCcEEEEEecCcCCccc-------cCCCCccccCceeEEEecCCCE--EEEEecHHHHHH
Confidence 9999999999999999731 39999999988652111 0111111234444445567777 899999988887
Q ss_pred HHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhc-c-CCcEEEecC
Q psy9579 784 FNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLN-S-TQKLIYVGR 859 (887)
Q Consensus 784 ~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~-~-~~~~~~~gr 859 (887)
++|++++ ..+++.||++++|.|||.+.| .++.|+.+ +++++|....+|+|++|...+.+... + ..+++.+|-
T Consensus 520 leAa~~L~~~Gi~v~VId~~~lkPlD~~~i-~sv~k~~~---vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~ 595 (641)
T PRK12571 520 LDAADLLEAEGISVTVADPRFVKPLDEALT-DLLVRHHI---VVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGL 595 (641)
T ss_pred HHHHHHHHhcCCCEEEEEcCcCCCcCHHHH-HHHhhhCC---EEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEec
Confidence 7776543 237999999999999999988 66777776 79999999999999999999987522 1 356777776
Q ss_pred CCCCCCCCCchhhH---HHHHHHHHHHh
Q psy9579 860 SCSASPASGYYSKH---CKEQITLLNNA 884 (887)
Q Consensus 860 ~~~~~~a~g~~~~h---~~~~~~i~~~a 884 (887)
+....+........ ....+.|++.+
T Consensus 596 ~d~f~~~g~~~el~~~~gl~~~~I~~~i 623 (641)
T PRK12571 596 PDRFIDHASREEMYAEAGLTAPDIAAAV 623 (641)
T ss_pred CCcCCCCCCHHHHHHHhCcCHHHHHHHH
Confidence 54433322222222 23556666554
No 25
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.6e-36 Score=358.31 Aligned_cols=439 Identities=13% Similarity=0.102 Sum_probs=304.2
Q ss_pred cCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eecc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTT 340 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST 340 (887)
....|++...++|+|.|+|+++++. +..+++++|||++ .+|.+||+||+|+. |++| +|+||.||+. .+.|
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~-----~~~v~~viGDG~~-~~G~~~Ealn~a~~--~~~~-li~iv~~N~~~s~~~ 211 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGK-----KNNVVAVIGDGAM-TAGQAYEAMNNAGY--LDSD-MIVILNDNKQVSLPT 211 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCC-----CCEEEEEeccccc-chhhHHHHHHHHHh--hCcC-EEEEEECCCCccccc
Confidence 3457889999999999999999876 7789999999999 99999999999999 9999 9999999985 3322
Q ss_pred CCCCccc---------------C-Cc--------------------cc----------------ccccccCCcEE-EEcC
Q psy9579 341 SPNDLRS---------------T-LY--------------------CT----------------DIGKIIEAPVF-HVNG 367 (887)
Q Consensus 341 ~~~~~rs---------------s-~~--------------------~s----------------d~Ak~~giP~~-~VdG 367 (887)
.+.++.+ + .| +. .+.+++|+-.+ -|||
T Consensus 212 ~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDG 291 (677)
T PLN02582 212 ATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 291 (677)
T ss_pred cccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCC
Confidence 1111100 0 00 00 23567899965 8999
Q ss_pred CCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHH
Q psy9579 368 DDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESEN 447 (887)
Q Consensus 368 ~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~ 447 (887)
+|++++..+.+.|.+. ..++|++|.++|-+-.|-..+-+. |..|-. .-|. +.
T Consensus 292 Hd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ae~~----~~~~H~----~~~f-------------~~----- 343 (677)
T PLN02582 292 HNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYAERA----ADKYHG----VVKF-------------DP----- 343 (677)
T ss_pred CCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChhhcC----hhhcCC----CCCC-------------Cc-----
Confidence 9999999988877642 116899999999887776644211 111100 0000 00
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHH
Q psy9579 448 MIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDR 527 (887)
Q Consensus 448 i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R 527 (887)
.|+-.. +.
T Consensus 344 --------------------------------------------~~g~~~-------------~~--------------- 351 (677)
T PLN02582 344 --------------------------------------------ATGKQF-------------KV--------------- 351 (677)
T ss_pred --------------------------------------------ccCCcc-------------CC---------------
Confidence 000000 00
Q ss_pred HhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceE
Q psy9579 528 VEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFH 607 (887)
Q Consensus 528 ~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~ 607 (887)
......|..+=.-|...+++++++|++.++|.+.|+ + +..+.++| +.|
T Consensus 352 -----~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~---------------------g-----l~~f~~~f-P~R 399 (677)
T PLN02582 352 -----KAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT---------------------G-----LNLFARRF-PTR 399 (677)
T ss_pred -----CCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCcc---------------------c-----hHHHHHHc-Ccc
Confidence 000011222212223346788999999999976442 2 33566777 899
Q ss_pred EeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cCCC-CCccccC
Q psy9579 608 IINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GYEG-QGPEHSS 685 (887)
Q Consensus 608 V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~~g-~GpeHSs 685 (887)
++|++|+|+.++|++.|+|+.|.+ ||+++ |.+|..- ++||++... + ....++|++++| |+.| .||.||+
T Consensus 400 ~fdvGIAEq~~vg~AaGLA~~G~k--Pvv~~-fs~Fl~R---A~DQI~~dv-a--l~~lpVv~v~~~aG~vg~dG~TH~~ 470 (677)
T PLN02582 400 CFDVGIAEQHAVTFAAGLACEGLK--PFCAI-YSSFLQR---GYDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCG 470 (677)
T ss_pred ccccCcCHHHHHHHHHHHHHCCCe--EEEEe-cHHHHHH---HHHHHHHHH-H--hcCCCEEEEEECCCcccCCCCcccc
Confidence 999999999999999999999986 79998 9999865 599998763 2 234789999997 5655 4899997
Q ss_pred chHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccC
Q psy9579 686 ARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIID 765 (887)
Q Consensus 686 ~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~ 765 (887)
. |-.--+...|||+|+.|+++.+++++|+.++..+ ..|++|..||.... +... +-++ ..+...+++..++++
T Consensus 471 ~--~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~~~-~gPv~IR~pr~~~~-~~~~-~~~~---~~~~~~iGk~~vlr~ 542 (677)
T PLN02582 471 A--FDVTYMACLPNMVVMAPSDEAELFHMVATAAAID-DRPSCFRYPRGNGI-GVQL-PPNN---KGIPIEVGKGRILLE 542 (677)
T ss_pred c--HHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC-CCCEEEEEecCCCC-Cccc-CCcc---cccccccCceEEEEe
Confidence 4 5433346789999999999999999999998532 38999999987421 1000 0000 001123445555567
Q ss_pred CCCceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHH
Q psy9579 766 PKKIKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKEN 843 (887)
Q Consensus 766 ~~~v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~ 843 (887)
+++| +|||+|.+++..++|++.+ ..+++.||++++|.|||.+.|.+ +.|+.+ +|++.||+..+|+++.|...
T Consensus 543 G~dv--tIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~-~~k~~~---~vVtvEe~~~GG~Gs~va~~ 616 (677)
T PLN02582 543 GERV--ALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRS-LAKSHE---VLITVEEGSIGGFGSHVAQF 616 (677)
T ss_pred CCCE--EEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHH-HhhhCC---EEEEECCCCCCcHHHHHHHH
Confidence 7777 8999999888887776543 23799999999999999999954 555555 47777887779999999999
Q ss_pred HHHh-hc-cCCcEEEecCCCCCC
Q psy9579 844 ILKY-LN-STQKLIYVGRSCSAS 864 (887)
Q Consensus 844 i~~~-~~-~~~~~~~~gr~~~~~ 864 (887)
+.+. .. ...+++.+|-+..-.
T Consensus 617 l~~~~~~~~~~~v~~~Gi~d~F~ 639 (677)
T PLN02582 617 MALDGLLDGKLKWRPLVLPDRYI 639 (677)
T ss_pred HHhcCCccCCceeEEecCCCccc
Confidence 8874 11 113566666655433
No 26
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.8e-37 Score=365.47 Aligned_cols=422 Identities=13% Similarity=0.120 Sum_probs=299.6
Q ss_pred cCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-----
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI----- 336 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~----- 336 (887)
+.-.|++.-.++|+|.|+|+++++. +.-++|++|||++ .+|.+||+||.|+- ++.. +|.|+.+|+.
T Consensus 174 ~~tGslg~glS~a~GmA~a~~l~g~-----~~~v~~viGDGel-~eG~~wEAl~~a~~--~~~n-livIlddN~~~~~~~ 244 (641)
T PLN02234 174 FGTGHSSTTLSAGLGMAVGRDLKGM-----NNSVVSVIGDGAM-TAGQAYEAMNNAGY--LHSN-MIVILNDNKQVSLPT 244 (641)
T ss_pred ECCCchHHHHHHHHHHHHHHHhCCC-----CCeEEEEEccchh-hhHHHHHHHHHHhh--hCCC-EEEEEECCCCCcccc
Confidence 3456888889999999999999876 6778999999999 99999999999996 6655 9999999987
Q ss_pred ----eeccCCCCc-------ccC-----CcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 337 ----GFTTSPNDL-------RST-----LYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 337 ----g~ST~~~~~-------rss-----~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
|.+.+.... +++ ....++.+++|+-++ .|||+|++++..+.+.+-+. +..+|++|.+.|-.
T Consensus 245 ~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~K 322 (641)
T PLN02234 245 ANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEK 322 (641)
T ss_pred cccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEec
Confidence 222211100 000 135678899999999 99999999999998776322 23589999999988
Q ss_pred cCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccc
Q psy9579 400 KLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEW 479 (887)
Q Consensus 400 ~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w 479 (887)
-.|-+..-+. +..|... ...|+ +.| +. ..+..
T Consensus 323 GkGv~~~E~~----~~~~H~~-~~~~~---------~~g-------~~------------------~~~~~--------- 354 (641)
T PLN02234 323 GRGYPYAERA----DDKYHGV-LKFDP---------ETG-------KQ------------------FKNIS--------- 354 (641)
T ss_pred CCCcchhhcC----CcccCCC-CCCCc---------ccc-------cc------------------ccCCC---------
Confidence 7777644320 0111000 00111 000 00 00000
Q ss_pred cccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEE
Q psy9579 480 APFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRL 559 (887)
Q Consensus 480 ~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl 559 (887)
. ...|..+=.-|...+++++++|++
T Consensus 355 -------------~------------------------------------------~~sy~~af~~aL~e~a~~D~~Iv~ 379 (641)
T PLN02234 355 -------------K------------------------------------------TQSYTSCFVEALIAEAEADKDIVA 379 (641)
T ss_pred -------------C------------------------------------------CCCHHHHHHHHHHHHHHHCcCEEE
Confidence 0 011111111122345778999999
Q ss_pred ecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeee
Q psy9579 560 SGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQ 639 (887)
Q Consensus 560 ~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~q 639 (887)
.|+|++.||+ +..+.++| +.|++|++|+|++++|++.|+|+.|.+ ||+++
T Consensus 380 l~adm~ggt~--------------------------~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~r--Pvv~~- 429 (641)
T PLN02234 380 IHAAMGGGTM--------------------------LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLK--PFCTI- 429 (641)
T ss_pred EECCCCCCcc--------------------------hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCe--EEEEe-
Confidence 9999987654 22455566 899999999999999999999999986 78898
Q ss_pred ccccccchhHHHHHHHhhHHHHhcCccCcEEEe-cccCCC-CCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHH
Q psy9579 640 FGDFANGAQVIIDQFISSSEEKWGRISGLTLML-PHGYEG-QGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRY 717 (887)
Q Consensus 640 FgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~l-P~G~~g-~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~ 717 (887)
|++|..- .+||+++.. +. ...+++++. ..|+.| .||.||+. |-...+...|||+|+.|++|.+++++|+.
T Consensus 430 fs~Fl~R---A~DQI~~dv-a~--~~lpV~~v~~~aG~~g~dG~TH~~~--~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 430 YSSFMQR---AYDQVVHDV-DL--QKLPVRFAIDRAGLMGADGPTHCGA--FDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred hHHHHHH---HHHHHHHHH-hh--cCCCEEEEEeCCccCCCCCcccccc--HHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 9999865 599998763 22 335677776 447655 59999985 43333467899999999999999999999
Q ss_pred HHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHc--CCCcE
Q psy9579 718 QIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKK--NKNDV 795 (887)
Q Consensus 718 q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~~~~v 795 (887)
++..+ .+|++|.+||..+.... .+.+. .+ +...++++.+++++++| +||++|.+.+.+++|++.+ ..+++
T Consensus 502 a~~~~-~~Pv~ir~~R~~~~~~~--~~~~~--~~-~~~~iGk~~vlreG~dv--tIva~G~~v~~Al~AA~~L~~~GI~v 573 (641)
T PLN02234 502 AAAID-DRPSCFRYHRGNGIGVS--LPPGN--KG-VPLQIGRGRILRDGERV--ALLGYGSAVQRCLEAASMLSERGLKI 573 (641)
T ss_pred HHhCC-CCCEEEEeecccccccc--cCCCC--cc-ccccCceEEEEEeCCCE--EEEEecHHHHHHHHHHHHHHhcCCCE
Confidence 87543 37999999998763211 00000 01 11235555556678887 8999999888888776643 23799
Q ss_pred EEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHh
Q psy9579 796 VIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKY 847 (887)
Q Consensus 796 ~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~ 847 (887)
+|||+++|.|||.+.| .++.|+.+ +|++.||+..+|++++|...+.+.
T Consensus 574 ~VId~rsikPlD~~~i-~sl~k~~~---~vVt~Ee~~~GG~Gs~Va~~l~e~ 621 (641)
T PLN02234 574 TVADARFCKPLDVALI-RSLAKSHE---VLITVEEGSIGGFGSHVVQFLALD 621 (641)
T ss_pred EEEecCCcCCCCHHHH-HHHHHhCC---EEEEECCCCCCcHHHHHHHHHHHc
Confidence 9999999999999986 56777776 577888888899999999999875
No 27
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=3.5e-36 Score=358.95 Aligned_cols=447 Identities=15% Similarity=0.101 Sum_probs=292.1
Q ss_pred CCCcccccccccchhHHHHHhhccCC-----CCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCce
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRDDK-----FGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIG 337 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~~~-----~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g 337 (887)
.-+++|...|.|+|+|+|.++.+..- ...+..++|++|||++ .+|.+||+|+.|+. |++|-+|+||.||+|+
T Consensus 116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~-~~g~~~Eal~~A~~--~~L~~li~v~dnN~~~ 192 (624)
T PRK05899 116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL-MEGISHEACSLAGH--LKLGNLIVIYDDNRIS 192 (624)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh-hchHHHHHHHHHHH--hCCCCEEEEEECCCCc
Confidence 35789999999999999998765310 0115689999999999 99999999999999 9998899999999999
Q ss_pred eccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhh
Q psy9579 338 FTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMY 417 (887)
Q Consensus 338 ~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Y 417 (887)
++++.... ....+.++++++|++++.|||+|++++..|.+.|.+. ++|++|++.|+|-.||+..+++. .|
T Consensus 193 ~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~----~~P~vI~v~t~kg~g~~~~e~~~-----~~ 262 (624)
T PRK05899 193 IDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKAS----TKPTLIIAKTIIGKGAPNKEGTH-----KV 262 (624)
T ss_pred cccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhc----CCCEEEEEEeEeccCCccccCCC-----cc
Confidence 99877643 3467788999999999999999999999999888742 68999999999999998655431 12
Q ss_pred HHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCH
Q psy9579 418 KKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISL 497 (887)
Q Consensus 418 r~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~ 497 (887)
.. ...++ ..+.+.+.+-+ ++. +..++.++ +.+.++.+.+.+.. ....|....
T Consensus 263 H~--~~~~~-~~~~~~~~~l~-~~~-~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~-------------- 314 (624)
T PRK05899 263 HG--APLGA-EEIAAAKKELG-WDY-EPFEVPEE----VYAHWRKAKERGAK-----AEAEWNEKF-------------- 314 (624)
T ss_pred cC--CCCCH-HHHHHHHHHcC-CCc-ccccCChH----HHHHHHHhhhcCch-----hHHHHHHhh--------------
Confidence 10 00001 11222111111 110 00011111 11111111110000 000111100
Q ss_pred HHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeee
Q psy9579 498 EKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILY 577 (887)
Q Consensus 498 ~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~ 577 (887)
.. .......++.++ +..++.++++|++.++|+..|++
T Consensus 315 ---------------------------~~------~~~~~~~a~~~~--l~~l~~~~~~v~vl~~D~~~~~~-------- 351 (624)
T PRK05899 315 ---------------------------AG------EKVATRKASGKA--LNALAKALPELVGGSADLAGSNN-------- 351 (624)
T ss_pred ---------------------------cc------cchHHHHHHHHH--HHHHHhhCCCEEEEeCCCccccC--------
Confidence 00 000011122332 34567889999999999988776
Q ss_pred ccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCC-CCCceEEe--eeccccccchhHHHHHH
Q psy9579 578 NQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTAS-PNTLTIWE--AQFGDFANGAQVIIDQF 654 (887)
Q Consensus 578 dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~-~~~l~i~E--~qFgDF~~~Aq~~~Dq~ 654 (887)
.. .|. .+...++..+.|++|++|||.+++|++.|+|+.| .+ ||++ ++|.||+ +||+
T Consensus 352 -----------~~-~~~-~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~--pv~~t~~~F~~r~------~~qi 410 (624)
T PRK05899 352 -----------TK-IKG-SKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFI--PFGGTFLVFSDYA------RNAI 410 (624)
T ss_pred -----------cc-ccc-ccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCe--EEEEEcHHHHHHH------HHHH
Confidence 11 111 1112111224899999999999999999999999 76 7999 9998887 4565
Q ss_pred HhhHHHHhcCccCcEEEec-ccC--CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhC-CCCCcEEEE
Q psy9579 655 ISSSEEKWGRISGLTLMLP-HGY--EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIR-PIRKPLIII 730 (887)
Q Consensus 655 i~~~~~kw~~~sglv~~lP-~G~--~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~-~~r~Plv~~ 730 (887)
-.. .. ...+++++.. .|+ .+.||.| ++ +|-.-.+...|||+|+.|++|.++.++|+.++.. + +|++|.
T Consensus 411 r~~--~~--~~~pv~~v~~~~G~~~g~~G~tH-q~-~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~--~P~~ir 482 (624)
T PRK05899 411 RLA--AL--MKLPVIYVFTHDSIGVGEDGPTH-QP-VEQLASLRAIPNLTVIRPADANETAAAWKYALERKD--GPSALV 482 (624)
T ss_pred HHH--Hh--cCCCEEEEEECCCcCcCCCCCCc-cc-HHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCC--CCEEEE
Confidence 432 11 2356777754 475 3469999 33 9975556788999999999999999999999986 5 999999
Q ss_pred ccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCH
Q psy9579 731 TPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPN 808 (887)
Q Consensus 731 ~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~ 808 (887)
++|.-.......++...+..|. .+++++.+| +|+|+|.+.+.+++|++.+ ..++++||++++|.|||.
T Consensus 483 ~~r~~~~~~~~~~~~~~~~~G~--------~~l~~G~dv--tiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~ 552 (624)
T PRK05899 483 LTRQNLPVLERTAQEEGVAKGG--------YVLRDDPDV--ILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDE 552 (624)
T ss_pred EeCCCCCCcCCccccccccCCc--------EEEecCCCE--EEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhcc
Confidence 9864331110000011222232 233456777 8999999888887776643 237999999999999999
Q ss_pred HH---HHHHHHhcCCCCeEEEEecCCCCCC
Q psy9579 809 ED---FLKILKKFRYFEKLIWAQDEPKNQG 835 (887)
Q Consensus 809 ~~---i~~~~~k~~~~~~~v~~qEe~~n~G 835 (887)
++ +..-+- +.+.++| +.|++...|
T Consensus 553 ~e~h~~~~~lg--~~~~~~v-~~e~~~~~g 579 (624)
T PRK05899 553 QDAAYKESVLP--AAVTARV-AVEAGVADG 579 (624)
T ss_pred CcHHHHhcccc--ccccceE-EEccCCccc
Confidence 94 444441 2222344 556665555
No 28
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=8.9e-37 Score=337.38 Aligned_cols=293 Identities=16% Similarity=0.183 Sum_probs=238.0
Q ss_pred hHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhcc
Q psy9579 548 ASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFST 627 (887)
Q Consensus 548 ~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~ 627 (887)
..++.++++|++.|+|++.+ +++|..|+++.++|+..|++|+||+|+.++|++.|+|+
T Consensus 15 ~~~~~~dp~iv~l~~d~~~~----------------------~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~ 72 (327)
T CHL00144 15 DEEMARDPRVFVIGEDVGHY----------------------GGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAM 72 (327)
T ss_pred HHHHhhCCCEEEEeCccccc----------------------CCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHH
Confidence 45688999999999999862 34566788999999877999999999999999999999
Q ss_pred CCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCc------cCcEEEeccc-CCCCCccccCchHHHHHhhhcCCCc
Q psy9579 628 ASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRI------SGLTLMLPHG-YEGQGPEHSSARLERFLQLCANNNI 700 (887)
Q Consensus 628 ~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~------sglv~~lP~G-~~g~GpeHSs~r~Er~lq~~~~~nl 700 (887)
.|.+ ||+|.||.+|..-| +||+++. -++|+++ .++|++.|.| +.+.|+.||++ +|.+| .+.|||
T Consensus 73 ~G~~--pvv~~~~~~f~~ra---~dQi~~~-~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~-~ea~~--~~iPgl 143 (327)
T CHL00144 73 TGLR--PIVEGMNMGFLLLA---FNQISNN-AGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR-LESYF--QSVPGL 143 (327)
T ss_pred CCCE--EEEEeehhhHHHHH---HHHHHHH-HHHHhhccCCCccCCEEEEecCCCCCCCCcccccc-HHHHH--hcCCCC
Confidence 9986 79999999998765 9998877 5777754 4588888865 44679999986 79988 466899
Q ss_pred EEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHH
Q psy9579 701 QIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIY 780 (887)
Q Consensus 701 ~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~ 780 (887)
+|++||+|.|++++|+++++.+ .|++|+|||.||+.+..+ ++..+...++++.++++++++ +|+|||.+.
T Consensus 144 ~V~~Psd~~d~~~~l~~a~~~~--~Pv~ire~~~l~~~~~~v------~~~~~~~~~Gk~~v~~~G~di--tiia~G~~v 213 (327)
T CHL00144 144 QIVACSTPYNAKGLLKSAIRSN--NPVIFFEHVLLYNLKEEI------PDNEYLLPLEKAEVVRPGNDI--TILTYSRMR 213 (327)
T ss_pred EEEEeCCHHHHHHHHHHHHhCC--CcEEEEEcHHhcCCCCCC------CCCCccccCCeeEEEEcCCCE--EEEEccHHH
Confidence 9999999999999999999866 999999999999865322 222233356666667788888 899999988
Q ss_pred HHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhh-c-cCCcEEE
Q psy9579 781 YDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL-N-STQKLIY 856 (887)
Q Consensus 781 ~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~-~-~~~~~~~ 856 (887)
+..++|++.+ ..++++|||+++|.|||.++|.++++||++ +|+++|....+|++++|...+.+.. . ...+++.
T Consensus 214 ~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~---vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~r 290 (327)
T CHL00144 214 HHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHK---VLIVEECMKTGGIGAELIAQINEHLFDELDAPIVR 290 (327)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCc---EEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEE
Confidence 8887776543 237999999999999999999999999998 7999999999999999999998863 2 1357777
Q ss_pred ecCCCCCCC-CCCchhhHHHHHHHHHHHh
Q psy9579 857 VGRSCSASP-ASGYYSKHCKEQITLLNNA 884 (887)
Q Consensus 857 ~gr~~~~~~-a~g~~~~h~~~~~~i~~~a 884 (887)
+|-+....| +.-+...+....++|++.+
T Consensus 291 l~~~d~~~~~~~~~~~~~gl~~~~I~~~i 319 (327)
T CHL00144 291 LSSQDVPTPYNGPLEEATVIQPAQIIEAV 319 (327)
T ss_pred EccCCCcCCCCccHHHHhCCCHHHHHHHH
Confidence 777666555 4445666666667777654
No 29
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=7e-37 Score=350.77 Aligned_cols=294 Identities=18% Similarity=0.193 Sum_probs=234.4
Q ss_pred hHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhcc
Q psy9579 548 ASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFST 627 (887)
Q Consensus 548 ~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~ 627 (887)
..+|.++++|+++|+|++. .++.|+.+++|.++||+.|++|+||+|.+++|++.|+|+
T Consensus 153 ~~~~~~d~~vv~i~~Dv~~----------------------~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~ 210 (464)
T PRK11892 153 AEEMRRDEDVFVMGEEVAE----------------------YQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAF 210 (464)
T ss_pred HHHHhhCcCEEEEeCCccc----------------------cCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHh
Confidence 4568899999999999976 345667788999999999999999999999999999999
Q ss_pred CCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccC------cEEEecccC-CCCCccccCchHHHHHhhhcCCCc
Q psy9579 628 ASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISG------LTLMLPHGY-EGQGPEHSSARLERFLQLCANNNI 700 (887)
Q Consensus 628 ~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sg------lv~~lP~G~-~g~GpeHSs~r~Er~lq~~~~~nl 700 (887)
.|.+ ||+|.|+.+|+.-| +||++++ .+||.++|| +|++.|+|. .+.|+ |||...+.|| ++.|||
T Consensus 211 ~G~r--Piv~~~~~~f~~ra---~dQI~n~-~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~-hhs~~d~a~~--~~iPgl 281 (464)
T PRK11892 211 AGLK--PIVEFMTFNFAMQA---IDQIINS-AAKTLYMSGGQMGCPIVFRGPNGAAARVAA-QHSQDYAAWY--SHIPGL 281 (464)
T ss_pred CCCE--EEEEEehHHHHHHH---HHHHHHH-HhHHhhhcCCccCCCEEEEecCCCCCCCCC-ccccCHHHHH--hhCCCC
Confidence 9987 79999999999665 9999988 478888765 889989874 46788 5555578888 567899
Q ss_pred EEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHH
Q psy9579 701 QIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIY 780 (887)
Q Consensus 701 ~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~ 780 (887)
+|++|+||+|+++||+.+++.+ +|++|+|||.+|..+..+..+++ |..+++++.++++++|| +|||+|.+.
T Consensus 282 ~V~~P~d~~d~~~ll~~ai~~~--~Pv~ile~~~ry~~~~~vp~~~~-----~~~~~Gka~v~r~G~Dv--tIva~G~~v 352 (464)
T PRK11892 282 KVVAPYSAADAKGLLKAAIRDP--NPVIFLENEILYGQSFDVPKLDD-----FVLPIGKARIHREGKDV--TIVSFSIGM 352 (464)
T ss_pred EEEEeCCHHHHHHHHHHHhhCC--CcEEEEechhhcCCCCCCCCcCC-----ccccCceEEEEEcCCCE--EEEEccHHH
Confidence 9999999999999999999765 99999999999976533322222 33356666667788888 899999976
Q ss_pred HHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhh-c-cCCcEEE
Q psy9579 781 YDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL-N-STQKLIY 856 (887)
Q Consensus 781 ~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~-~-~~~~~~~ 856 (887)
...+++++.+ ..++++|||+++|.|||.++|.++++||++ ||+++|...++|++++|...+.+.. . ...+++.
T Consensus 353 ~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~---vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~r 429 (464)
T PRK11892 353 TYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNR---LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLR 429 (464)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCe---EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEE
Confidence 6666665543 237999999999999999999999999998 7999999999999999999998863 2 1346666
Q ss_pred ecCCCCCCCC-CCchhhHHHHHHHHHHHh
Q psy9579 857 VGRSCSASPA-SGYYSKHCKEQITLLNNA 884 (887)
Q Consensus 857 ~gr~~~~~~a-~g~~~~h~~~~~~i~~~a 884 (887)
+|-++...|. .-+++.-.+..++|++.+
T Consensus 430 i~~~d~~~~~~~~le~~~l~~~~~Iv~av 458 (464)
T PRK11892 430 VTGKDVPMPYAANLEKLALPSVAEVVEAV 458 (464)
T ss_pred eccCCccCCcHHHHHHhcCCCHHHHHHHH
Confidence 6665544442 223333334666777654
No 30
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-36 Score=339.37 Aligned_cols=296 Identities=17% Similarity=0.238 Sum_probs=241.6
Q ss_pred HhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhc
Q psy9579 547 YASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFS 626 (887)
Q Consensus 547 ~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a 626 (887)
.-.+++++++|++.|+|++. .|++|..+.++.++||+.|++|++|+|++++|++.|+|
T Consensus 45 L~~~~~~d~~iv~l~~D~~~----------------------~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA 102 (355)
T PTZ00182 45 LDEELARDPKVFVLGEDVAQ----------------------YGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAA 102 (355)
T ss_pred HHHHHhhCCCEEEEeCCccc----------------------cCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHH
Confidence 35678899999999999973 34556678899999999999999999999999999999
Q ss_pred cCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhc------CccCcEEEecccCC-CCCccccCchHHHHHhhhcCCC
Q psy9579 627 TASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWG------RISGLTLMLPHGYE-GQGPEHSSARLERFLQLCANNN 699 (887)
Q Consensus 627 ~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~------~~sglv~~lP~G~~-g~GpeHSs~r~Er~lq~~~~~n 699 (887)
+.|.+ ||+++||+||...| +||+++.. ++|. ...++|++.|+|.. +.||.||++ +|.+|. +.||
T Consensus 103 ~~G~~--Pvv~~~fa~Fl~ra---~dQi~~d~-a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~-~ea~lr--~iPn 173 (355)
T PTZ00182 103 MNGLR--PIAEFMFADFIFPA---FDQIVNEA-AKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS-FEAYFA--HVPG 173 (355)
T ss_pred hCCCE--EEEEechhhHHHHH---HHHHHHHH-HHhhcccCCCccCCEEEEeCCCCCCCCCCcccch-HHHHHh--cCCC
Confidence 99976 89999999999665 99998773 5554 34679999998754 469999886 899885 6679
Q ss_pred cEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechH
Q psy9579 700 IQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKI 779 (887)
Q Consensus 700 l~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~ 779 (887)
|+|+.|+||.|++++|+.++..+ +|++|++||.|||.+... ..++.+...++++.++++++++ +|+|||.+
T Consensus 174 ~~V~~Psd~~e~~~~l~~a~~~~--~P~~i~~p~~l~r~~~~~-----~~~~~~~~~~Gk~~vl~~G~di--~Iia~Gs~ 244 (355)
T PTZ00182 174 LKVVAPSDPEDAKGLLKAAIRDP--NPVVFFEPKLLYRESVEV-----VPEADYTLPLGKAKVVREGKDV--TIVGYGSQ 244 (355)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCC--CcEEEEeehHHhCCCCCC-----CCcccccccCCcceEecCCCCE--EEEEeCHH
Confidence 99999999999999999999765 999999999999875432 1122233345666666677776 89999999
Q ss_pred HHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhc--cCCcEE
Q psy9579 780 YYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLN--STQKLI 855 (887)
Q Consensus 780 ~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~--~~~~~~ 855 (887)
+..++++++.+ ..+++.||++++|+|||.++|.++++|+++ ||+|+|....+|+++.|...+.+... ...+++
T Consensus 245 ~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~---IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ 321 (355)
T PTZ00182 245 VHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGR---CVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIK 321 (355)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCE---EEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeE
Confidence 99888887643 237999999999999999999999999987 79999999999999999999988632 134677
Q ss_pred EecCCCCCCCCC-CchhhHHHHHHHHHHHhh
Q psy9579 856 YVGRSCSASPAS-GYYSKHCKEQITLLNNAF 885 (887)
Q Consensus 856 ~~gr~~~~~~a~-g~~~~h~~~~~~i~~~a~ 885 (887)
.+|-++...|.. -++....+..++|++.+-
T Consensus 322 ri~~~d~~~p~~~~le~~~~~~~~~i~~~~~ 352 (355)
T PTZ00182 322 RVCGADTPFPYAKNLEPAYLPDKEKVVEAAK 352 (355)
T ss_pred EeCCCCccCCCChHHHHHhCCCHHHHHHHHH
Confidence 777766555544 468888888888888764
No 31
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.5e-35 Score=330.67 Aligned_cols=310 Identities=15% Similarity=0.174 Sum_probs=246.4
Q ss_pred ccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchH
Q psy9579 537 VDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEE 616 (887)
Q Consensus 537 idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ 616 (887)
+.|..+=.-+.-.+++++++|++.|+|++. .++.|..++++.++||+.|++|++|+|+
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~----------------------~~g~~~~~~~l~~~~~P~R~~d~GIAEq 84 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGE----------------------YQGAYKITKGLLQKYGPDRVLDTPITEA 84 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEcccccc----------------------ccCccchhhhHHHHhCCCcEEECchhHH
Confidence 344333333445678999999999999975 3456677889999999999999999999
Q ss_pred HHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCc------cCcEEEecccC-CCCCccccCchHH
Q psy9579 617 AILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRI------SGLTLMLPHGY-EGQGPEHSSARLE 689 (887)
Q Consensus 617 ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~------sglv~~lP~G~-~g~GpeHSs~r~E 689 (887)
.++|++.|+|+.|.+ ||+|+||.||..-| +||+++. -++|+++ .+++++.|+|. .|.|+.||+. .+
T Consensus 85 ~~vg~AaGlA~~G~~--P~v~~~~~~f~~ra---~dQi~~d-va~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-~~ 157 (356)
T PLN02683 85 GFTGIGVGAAYAGLK--PVVEFMTFNFSMQA---IDHIINS-AAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-FA 157 (356)
T ss_pred HHHHHHHHHHHCCCE--EEEEEehhhHHHHH---HHHHHHH-HHHhccccCCCccCCEEEEEeCCCCCCCCCccccC-HH
Confidence 999999999999997 78999999999765 9999877 4777766 46999999874 5679999766 67
Q ss_pred HHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCc
Q psy9579 690 RFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKI 769 (887)
Q Consensus 690 r~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v 769 (887)
.+| .+.|||+|+.|++|.|+.++|+.++..+ +|++|++||.+++...... ++..+..+...+++..+++++++|
T Consensus 158 a~l--r~iPnl~V~~Pad~~e~~~~l~~a~~~~--gPv~ir~~~~~~~~~~~~~--~~~~~~~~~~~~Gk~~v~r~G~dv 231 (356)
T PLN02683 158 AWY--SSVPGLKVLAPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVS--AEVLDSSFVLPIGKAKIEREGKDV 231 (356)
T ss_pred HHH--hcCCCCEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEehhhccCCCCCC--CCCCCccccccCCeeEEEEcCCCE
Confidence 887 5678999999999999999999998765 8999999999998643321 111111122345666666778887
Q ss_pred eEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHh
Q psy9579 770 KRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKY 847 (887)
Q Consensus 770 ~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~ 847 (887)
+|||+|.+....+++++++ ..++++|||+++|.|||.++|.++++||++ ||+++|...++|++++|...+.+.
T Consensus 232 --tIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~---vvtvEE~~~~GGlGs~Va~~l~e~ 306 (356)
T PLN02683 232 --TIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNR---LVTVEEGWPQHGVGAEICASVVEE 306 (356)
T ss_pred --EEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCe---EEEEeCCCcCCCHHHHHHHHHHHh
Confidence 8999999888887776543 237999999999999999999999999998 799999999999999999999987
Q ss_pred h-c-cCCcEEEec-CCCCCCCCCCchhhHHHHHHHHHHHhhc
Q psy9579 848 L-N-STQKLIYVG-RSCSASPASGYYSKHCKEQITLLNNAFL 886 (887)
Q Consensus 848 ~-~-~~~~~~~~g-r~~~~~~a~g~~~~h~~~~~~i~~~a~~ 886 (887)
. . ...+++.+| ++.+.+++.-+++...+..++|++.+.+
T Consensus 307 ~f~~~~~~v~rlg~~d~~~p~~~~le~~~~p~~~~i~~a~~~ 348 (356)
T PLN02683 307 SFDYLDAPVERIAGADVPMPYAANLERLALPQVEDIVRAAKR 348 (356)
T ss_pred chhccCCCeEEeccCCcCCCccHHHHHhhCCCHHHHHHHHHH
Confidence 3 2 133555555 4556666667788888888888877653
No 32
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1.3e-35 Score=328.35 Aligned_cols=295 Identities=17% Similarity=0.171 Sum_probs=234.9
Q ss_pred HHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhh
Q psy9579 546 AYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGF 625 (887)
Q Consensus 546 A~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~ 625 (887)
+.-.++.++++|++.|+|++. .++.|..++++.++||+.|++|+||+|++++|++.|+
T Consensus 13 ~L~~~~~~d~~iv~l~~d~~~----------------------~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGl 70 (327)
T PRK09212 13 AMQEEMERDPKVFLMGEEVGE----------------------YQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGA 70 (327)
T ss_pred HHHHHHHhCCCEEEEcCcccc----------------------cCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHH
Confidence 445678899999999999975 3456777889999999999999999999999999999
Q ss_pred ccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcC------ccCcEEEeccc-CCCCCccccCchHHHHHhhhcCC
Q psy9579 626 STASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGR------ISGLTLMLPHG-YEGQGPEHSSARLERFLQLCANN 698 (887)
Q Consensus 626 a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~------~sglv~~lP~G-~~g~GpeHSs~r~Er~lq~~~~~ 698 (887)
|+.|.+ ||+|+|+.+|..-| +||+++. .++++. ..++|++.|.| +.+.|+.||++ +|.+| .+.|
T Consensus 71 A~~G~~--Piv~~~~~~f~~ra---~dQi~~d-~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~-~ea~~--r~iP 141 (327)
T PRK09212 71 AFAGLR--PIVEFMTFNFSMQA---IDQIVNS-AAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC-YAAWY--SHIP 141 (327)
T ss_pred HHcCCe--eEEEeehhhHHHHH---HHHHHHH-HHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC-HHHHH--hcCC
Confidence 999986 78999999999766 9999877 356653 35688999987 45679999888 79888 5778
Q ss_pred CcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEech
Q psy9579 699 NIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGK 778 (887)
Q Consensus 699 nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~ 778 (887)
||+|+.|++|.|+.++|+.++..+ +|++|++||.+|..+..+ .++.+...++++.++++++++ +|||||.
T Consensus 142 ~l~V~~P~d~~e~~~~l~~a~~~~--~Pv~i~~~~~~~~~~~~~------~~~~~~~~~Gk~~vl~~G~di--~iva~G~ 211 (327)
T PRK09212 142 GLKVVAPYFAADCKGLLKTAIRDP--NPVIFLENEILYGHSHEV------PEEEESIPIGKAAILREGSDV--TIVTFSI 211 (327)
T ss_pred CCEEEeeCCHHHHHHHHHHHHhCC--CcEEEEEchhhcCCCCCC------CCCCccccCCeeEEEEeCCCE--EEEEccH
Confidence 999999999999999999999765 999999999999742221 111122345555556677877 8999999
Q ss_pred HHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhc---cCCc
Q psy9579 779 IYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLN---STQK 853 (887)
Q Consensus 779 ~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~---~~~~ 853 (887)
++..+++|.+.+ ..+++.||++++|+|||.++|.++++++++ ||+++|....+|+++.+...+.+... ..+.
T Consensus 212 ~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~---vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i 288 (327)
T PRK09212 212 QVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNR---LVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPV 288 (327)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCe---EEEEcCCCCCCCHHHHHHHHHHHhCccccCCCe
Confidence 888888776643 237999999999999999999999999988 79999999999999999999988632 2356
Q ss_pred EEEecCCCCCCCCCCchhhHHHHHHHHHHHh
Q psy9579 854 LIYVGRSCSASPASGYYSKHCKEQITLLNNA 884 (887)
Q Consensus 854 ~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a 884 (887)
++|.+++.+.+.+.-++....+..++|++.+
T Consensus 289 ~r~~~~~~~~~~~~~le~~~l~~~~~I~~~i 319 (327)
T PRK09212 289 ERVTGKDVPLPYAANLEKLALPSEEDIIEAV 319 (327)
T ss_pred EEEcCCCccCCchHHHHHhcCCCHHHHHHHH
Confidence 7888888765433112222234666777654
No 33
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=7.8e-32 Score=318.28 Aligned_cols=523 Identities=12% Similarity=0.090 Sum_probs=346.0
Q ss_pred HHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccc-CC-chhHHHHHHHHHHHhhcCCCCcEEec
Q psy9579 126 IQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRY--VGQKRFSL-EG-SESFILSLNEIIQHSGKRGIREIVIG 201 (887)
Q Consensus 126 l~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~--~~~krfg~-eG-~Ea~~vgl~~~i~~a~al~~~D~v~g 201 (887)
+-++|+.+..-..|+.+++.++-. ++=++|...- ..+.-+|. .| -|.+ +|+-..++ .-.+.+|+=
T Consensus 78 ~L~~i~~P~dlk~L~~~eL~~La~------EiR~~li~~v~s~~GGHl~snLGvVELT-vALH~VFd----~p~DkiiwD 146 (701)
T PLN02225 78 ILDSIETPLQLKNLSVKELKLLAD------EIRTELHSVLWKKTQKSMNPSFAAIELT-LALHYVFR----APVDNILWD 146 (701)
T ss_pred hhhhcCCHHHHhhCCHHHHHHHHH------HHHHHHHHHhhcccCCCcCCCccHHHHH-HHHHHHhC----CCCCceeec
Confidence 345565553334677777766533 2333444433 23444443 66 3433 45644433 334566666
Q ss_pred CCccchHHHHHHHhCCCHHHH-HHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHH
Q psy9579 202 MAHRGRLNVLVNILGKKPKEL-FDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKA 280 (887)
Q Consensus 202 m~HRgr~~~L~n~~G~~~~~i-f~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A 280 (887)
-.|-.-.|=| .-|-- +++ ..++-|-... . -+..|.|= .+.-.|-.+-...|.|.|.|
T Consensus 147 vgHQ~Y~HKi--LTGR~-~~f~~Rq~~GlsGf-------------~----~r~ES~~D--~f~~GHssTSiSaalG~a~a 204 (701)
T PLN02225 147 AVEQTYAHKV--LTRRW-SAIPSRQKNGISGV-------------T----SQLESEYD--SFGTGHGCNSISAGLGLAVA 204 (701)
T ss_pred cccccchhhH--hcCCh-hhcCccccCCcCCC-------------C----CCCCCCCC--CCCCChHHHHHHHHHHHHHH
Confidence 6788877777 44422 111 0222221111 1 11222221 13446777778889999999
Q ss_pred HHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcc------cCCcc---
Q psy9579 281 RMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLR------STLYC--- 351 (887)
Q Consensus 281 ~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~r------ss~~~--- 351 (887)
+.+++. +.-+|+++||||+ .-|..+|+||-|.- .+.+ +|.|+.+|+.+|+-+.+... -+.|+
T Consensus 205 rdl~g~-----~~~vvaVIGDGal-tgGma~EaLN~~g~--~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l 275 (701)
T PLN02225 205 RDIKGK-----RDRVVAVIDNATI-TAGQAYEAMSNAGY--LDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKI 275 (701)
T ss_pred HHhcCC-----CCcEEEEEcCcch-hhhhHHHHHhhhhc--cCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHH
Confidence 999876 5568999999999 99999999999998 7888 99999999999998710000 00000
Q ss_pred ------------------------------------------c-ccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHcc
Q psy9579 352 ------------------------------------------T-DIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKF 387 (887)
Q Consensus 352 ------------------------------------------s-d~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~ 387 (887)
. .+-+.+|+-.+ -|||+|++++..+.+.+.+. ..
T Consensus 276 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~ 353 (701)
T PLN02225 276 QSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DS 353 (701)
T ss_pred hccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CC
Confidence 0 23344555555 58999999998888777542 22
Q ss_pred CCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy9579 388 KKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIP 467 (887)
Q Consensus 388 ~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~ 467 (887)
.+||||+++|= -|+ .
T Consensus 354 ~~PvlvHv~T~--KGk---------------------------------------------------------------d 368 (701)
T PLN02225 354 MGPVLVHVITE--ENR---------------------------------------------------------------D 368 (701)
T ss_pred CCCEEEEEEec--CCC---------------------------------------------------------------C
Confidence 48999999972 121 0
Q ss_pred CCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHH
Q psy9579 468 SNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAY 547 (887)
Q Consensus 468 ~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~ 547 (887)
+. . .... . . ....+ ... +++++ .
T Consensus 369 -~~-t----g~~~---~-----~-~~~~s-----------------------~~~-----------------~f~~a--L 391 (701)
T PLN02225 369 -AE-T----GKNI---M-----V-KDRRT-----------------------YSD-----------------CFVEA--L 391 (701)
T ss_pred -CC-C----CCcC---C-----C-CCCcC-----------------------HHH-----------------HHHHH--H
Confidence 00 0 0000 0 0 00000 000 11111 1
Q ss_pred hHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhcc
Q psy9579 548 ASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFST 627 (887)
Q Consensus 548 ~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~ 627 (887)
..+++++++|++.+.|...||. |..+.++| |.|++|++|+|+..+||+.|+|+
T Consensus 392 ~~la~~D~~Iv~Itadm~~gtg--------------------------l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~ 444 (701)
T PLN02225 392 VMEAEKDRDIVVVHAGMEMDAS--------------------------LITFQERF-PDRFFNVGMAEQHAVTFSAGLSS 444 (701)
T ss_pred HHHHhhCCCEEEEeCCccCccc--------------------------HHHHHHHc-cccccccCccHHHHHHHHHHHHH
Confidence 2356789999999999976643 44777887 89999999999999999999999
Q ss_pred CCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCC-CCccccCchHHHHHhhhcCCCcEEEcCC
Q psy9579 628 ASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEG-QGPEHSSARLERFLQLCANNNIQIVQPT 706 (887)
Q Consensus 628 ~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g-~GpeHSs~r~Er~lq~~~~~nl~V~~ps 706 (887)
.|.+ ||++++ .+|..- .+||++.. -++++....+++.- .|+.| .||.|++.-=..|| ...|||+|++|+
T Consensus 445 ~G~k--Pvv~iy-stFlqR---AyDQI~~D-val~~lpV~~vid~-aGlvg~DG~TH~g~~Dia~l--r~IPnm~V~aPs 514 (701)
T PLN02225 445 GGLK--PFCIIP-SAFLQR---AYDQVVHD-VDRQRKAVRFVITS-AGLVGSDGPVQCGAFDIAFM--SSLPNMIAMAPA 514 (701)
T ss_pred CCCE--EEEEee-hhHHHH---HHHHHHHH-HHhhcCCceEEEEC-CccCCCCCccccccHHHHHH--hcCCCCEEEeeC
Confidence 9987 788866 699865 59999876 35665544555544 36655 58999986333676 567899999999
Q ss_pred CHhHHHHHHHHHHhCCCCCcEEEEccccccccC-CCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHH
Q psy9579 707 SASQIFHLLRYQIIRPIRKPLIIITPKSLLRKK-EASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFN 785 (887)
Q Consensus 707 tpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~-~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~ 785 (887)
++.++.++|+.++..+ ..|++|..||..+... ... .++ +...++++.+++++++| +||++|.+++..++
T Consensus 515 D~~El~~mL~~A~~~~-~gPv~IR~pRg~~~~~~~~~------~~~-~~~~iGK~~vlreG~dv--tIia~G~mv~~Al~ 584 (701)
T PLN02225 515 DEDELVNMVATAAYVT-DRPVCFRFPRGSIVNMNYLV------PTG-LPIEIGRGRVLVEGQDV--ALLGYGAMVQNCLH 584 (701)
T ss_pred CHHHHHHHHHHHHhcC-CCCEEEEecccccCCCCcCC------CCC-ccccCcceEEEEeCCCE--EEEeccHHHHHHHH
Confidence 9999999999887432 3899999999865321 111 111 11234555555678887 89999998888887
Q ss_pred HHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHh-h-ccCCcEEEecCCC
Q psy9579 786 FRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKY-L-NSTQKLIYVGRSC 861 (887)
Q Consensus 786 ~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~-~-~~~~~~~~~gr~~ 861 (887)
|++.+ ..++++|||+++|.|||.+.|.+++++|++ ||.++|... +|+++.|...+.+. + ....+++.+|-++
T Consensus 585 AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~---vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd 660 (701)
T PLN02225 585 AHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKF---LITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPIVLPD 660 (701)
T ss_pred HHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCe---EEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEEecCC
Confidence 76643 237999999999999999999999999987 688887775 99999999999885 1 1124677788776
Q ss_pred CCCC
Q psy9579 862 SASP 865 (887)
Q Consensus 862 ~~~~ 865 (887)
.-.+
T Consensus 661 ~F~~ 664 (701)
T PLN02225 661 GYIE 664 (701)
T ss_pred cCcC
Confidence 5444
No 34
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=6.9e-31 Score=314.02 Aligned_cols=462 Identities=15% Similarity=0.114 Sum_probs=287.3
Q ss_pred cCCCcccccccccchhHHHHHhhccC-----CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDD-----KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI 336 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~-----~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~ 336 (887)
....+||...|+|+|+|+|.|+.+.. ....+..++|++|||++ .||++||++|+|+. |+||-+|+||.||+|
T Consensus 107 ~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l-~EG~~~EA~~~A~~--~~L~nLi~ivd~N~~ 183 (653)
T TIGR00232 107 ATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCL-QEGISYEVASLAGH--LKLGKLIVLYDSNRI 183 (653)
T ss_pred eCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccc-cccHHHHHHHHHHH--hCCCcEEEEEeCCCe
Confidence 34567899999999999999987421 11236789999999999 99999999999999 999988999999999
Q ss_pred eeccCCCCcccCCcccccccccCCcEEEE-cCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEEeeecCCCCC--CCCCCCC
Q psy9579 337 GFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPESVILVTKIAVEYRMKF-KKDCIINIICFRKLGHNE--QDTPSLT 412 (887)
Q Consensus 337 g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~AV~~a~~~A~e~~r~~-~~PvlIe~vtYR~~GHne--~DdP~~t 412 (887)
+++++.+++. ...+.+++++||++++.| ||+|++++++|.+.| ++. ++|++|++.|+|-+|.+. .....-.
T Consensus 184 ~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g~G~~~~e~~~~~H~ 258 (653)
T TIGR00232 184 SIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIGFGSPNKAGTHGVHG 258 (653)
T ss_pred eecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeecccCcccCCCCcccC
Confidence 9999998876 568899999999999999 999999998777665 444 489999999999999862 2211111
Q ss_pred ---ChHhhHHHhh----CC-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCcccc
Q psy9579 413 ---QPLMYKKIFK----HP-------GIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSE 478 (887)
Q Consensus 413 ---qp~~Yr~i~~----~~-------dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~ 478 (887)
.+..|+...+ .. ++...|+..+.++| +...+++.+.+++...+ +|... ..
T Consensus 259 ~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~---~~~~~~w~~~~~~~~~~-------~p~~~------~~ 322 (653)
T TIGR00232 259 APLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERG---AKAEQEWNELFAAYKKK-------YPELA------AE 322 (653)
T ss_pred CCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH-------CHHHH------HH
Confidence 1122322111 01 12222222222222 11111112111111110 01000 00
Q ss_pred ccccccCCCCCCCCCccCHHHHHHHHHHhc-cCCCCCcch-hHHH---HHHHHHHhhhcCCCcccHHHHHHHHHhHHhhc
Q psy9579 479 WAPFLKNGYIDNCNTSISLEKLKFLSKKIT-NIPKGFKLH-KLVK---KILKDRVEMGCGKLNVDWGMAEHLAYASLVIS 553 (887)
Q Consensus 479 w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~-~~P~~f~~h-~~v~---~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~ 553 (887)
|. ..+. .+|.++... |..+ +-...| .+..+.| ..|...
T Consensus 323 ~~------------------------~~~~~~~p~~~~~~~~~~~~~~~~~atR-----------~~~g~~L--~~la~~ 365 (653)
T TIGR00232 323 FT------------------------RRLSGELPADWDKKLPEFKAKLQALATR-----------KYSQNVL--NAIANV 365 (653)
T ss_pred HH------------------------HHHhccCchhhhhhhhhhhccCcchHHH-----------HHHHHHH--HHHHhh
Confidence 00 0000 011110000 0000 000111 1222222 234566
Q ss_pred CCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhcc-CCCCC
Q psy9579 554 GYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFST-ASPNT 632 (887)
Q Consensus 554 ~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~-~~~~~ 632 (887)
++++++..-|+..-|. ++ ......+.+++ +.|.+|.=|+|.+.+|++.|+|+ .|.++
T Consensus 366 ~p~iv~lsaDl~~s~~-------------------~~--~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~~p 423 (653)
T TIGR00232 366 LPELLGGSADLAPSNL-------------------TK--WKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGGFKP 423 (653)
T ss_pred CCCEEEEeCCccccCC-------------------cc--cccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCCCeE
Confidence 7888888889865322 11 00000133443 46999999999999999999999 45554
Q ss_pred ceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-c--CCCCCccccCchHHHHHhhhcCCCcEEEcCCCHh
Q psy9579 633 LTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-G--YEGQGPEHSSARLERFLQLCANNNIQIVQPTSAS 709 (887)
Q Consensus 633 l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G--~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa 709 (887)
..-.-++|.||+ +||+-..+-. ..++++...| | ++.-||.|. .+|-.-.+.+.|||+|+.|+++.
T Consensus 424 ~~~tf~~F~~r~------~~~ir~~a~~----~lpV~~v~th~g~~~G~dG~THq--~iedia~lr~iPn~~v~~PaD~~ 491 (653)
T TIGR00232 424 YGGTFLMFVDYA------RPAIRLAALM----KLPVIYVYTHDSIGVGEDGPTHQ--PIEQLASLRAIPNLSVWRPCDGN 491 (653)
T ss_pred EEEEhHHHHHHH------HHHHHHHHhc----CCCEEEEEeCCccCCCCCCcccC--CHHHHHHHhcCCCCEEEeeCCHH
Confidence 333356666655 4554322222 2578888876 3 344589993 38986556788999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHH
Q psy9579 710 QIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKK 789 (887)
Q Consensus 710 ~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~ 789 (887)
++..+++.++.. ...|++|..++.-+..... .+..++..|. .++-+ +++.+| +|+++|.+....+++++.
T Consensus 492 E~~~~~~~a~~~-~~gP~~irl~r~~~~~~~~-~~~~~~~~G~--~vl~~----~~g~dv--~iia~G~~v~~al~Aa~~ 561 (653)
T TIGR00232 492 ETAAAWKYALES-QDGPTALILSRQNLPQLEE-SSLEKVLKGG--YVLKD----SKGPDI--ILIATGSEVSLAVEAAKK 561 (653)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEcCCccCCCCc-ccccccCCCc--EEEEe----cCCCCE--EEEEeChHHHHHHHHHHH
Confidence 999999999842 2389999988765432111 1112333443 22211 245666 899999977777776654
Q ss_pred c--CCCcEEEEeccccCCCCHHH---HHHHHHhcCCCCeEEEEecCC
Q psy9579 790 K--NKNDVVIIRIEQLYPFPNED---FLKILKKFRYFEKLIWAQDEP 831 (887)
Q Consensus 790 ~--~~~~v~vi~l~~L~P~~~~~---i~~~~~k~~~~~~~v~~qEe~ 831 (887)
+ ..+++.||++.++.|||.+. +...++++.. +|.++|..
T Consensus 562 L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~---vvtvEe~~ 605 (653)
T TIGR00232 562 LAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVT---RLAVEAGA 605 (653)
T ss_pred HHhcCCcEEEEecccCcccccCCHHHHHHHhcccCc---eEEEeccc
Confidence 3 23799999999999997755 6666666643 56565543
No 35
>PLN02790 transketolase
Probab=99.97 E-value=2.6e-27 Score=283.36 Aligned_cols=471 Identities=13% Similarity=0.105 Sum_probs=282.1
Q ss_pred cCCCcccccccccchhHHHHHhhccC---C--CCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDD---K--FGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI 336 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~---~--~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~ 336 (887)
...+|++...|+|+|+|+|.++.+.. + ...+..++|++|||++ .+|++||+||+|+. |+||-+|+||.||++
T Consensus 102 ~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l-~eG~~~EAl~~A~~--~~L~nli~i~d~N~~ 178 (654)
T PLN02790 102 VTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQ-MEGISNEAASLAGH--WGLGKLIVLYDDNHI 178 (654)
T ss_pred ccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcc-cchHHHHHHHHHHH--hCCCCEEEEEecCCc
Confidence 44588999999999999999964310 0 1125789999999999 99999999999999 999989999999999
Q ss_pred eeccCCCCcccCCcccccccccCCcEEEEcC--CCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCC-CCC-
Q psy9579 337 GFTTSPNDLRSTLYCTDIGKIIEAPVFHVNG--DDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTP-SLT- 412 (887)
Q Consensus 337 g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG--~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP-~~t- 412 (887)
+++++...+. ...+.+++++||++++.||| +|++++++|.+.|.+. .++|++|++.|++-.|.....++ .+-
T Consensus 179 ~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~~~~H~ 254 (654)
T PLN02790 179 SIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANSYSVHG 254 (654)
T ss_pred cccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCCCCcCC
Confidence 9999988654 45678899999999999988 7999999998887642 58999999999999998743332 110
Q ss_pred C---hHhhHHHh----hCCCHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCcccc
Q psy9579 413 Q---PLMYKKIF----KHPGIRE-------LYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSE 478 (887)
Q Consensus 413 q---p~~Yr~i~----~~~dpi~-------~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~ 478 (887)
. +..|+... ...+|.. .|.+ ..++|- ...+++.+.+.+ .....| . ....
T Consensus 255 ~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~-~~~~~~-------~~~~~w~~~~~~----~~~~~~-~----~~~~ 317 (654)
T PLN02790 255 AALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSK-HTKEGA-------ALEAEWNAKFAE----YKKKYP-E----EAAE 317 (654)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH-HHhhhh-------hhHHHHHHHHHH----HHhhCH-H----HHHH
Confidence 0 11122110 0011110 0110 001100 000111111111 000000 0 0000
Q ss_pred ccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcch-hHH---HHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcC
Q psy9579 479 WAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLH-KLV---KKILKDRVEMGCGKLNVDWGMAEHLAYASLVISG 554 (887)
Q Consensus 479 w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h-~~v---~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~ 554 (887)
+.... . ..+|.++... |.. .+...-|. +..+.| ..+....
T Consensus 318 ~~~~~---------------------~--~~~~~~~~~~~~~~~~~~~~~a~R~-----------~~~~~l--~~i~~~~ 361 (654)
T PLN02790 318 LKSLI---------------------S--GELPSGWEKALPTFTPEDPADATRN-----------LSQKCL--NALAKVL 361 (654)
T ss_pred HHHHh---------------------c--cCCchhhhhhhhhhcccCcchHHHH-----------HHHHHH--HHHHhhC
Confidence 00000 0 0111111000 000 00000111 111111 1233445
Q ss_pred CcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccC--CCCC
Q psy9579 555 YGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTA--SPNT 632 (887)
Q Consensus 555 ~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~--~~~~ 632 (887)
++++..-=|+...+ .....-+..+.+++-+.|.+|-=|+|.+.++++-|+|+. |.++
T Consensus 362 p~iv~gsaDl~~s~---------------------~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P 420 (654)
T PLN02790 362 PGLIGGSADLASSN---------------------MTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIP 420 (654)
T ss_pred CCeEEEECCCCccc---------------------ccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEE
Confidence 77765555765421 111111334445533579999999999999999999996 4765
Q ss_pred ceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-c--CCCCCccccCchHHHHHhhhcCCCcEEEcCCCHh
Q psy9579 633 LTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-G--YEGQGPEHSSARLERFLQLCANNNIQIVQPTSAS 709 (887)
Q Consensus 633 l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G--~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa 709 (887)
.+-.=++|.||... |+-..+-. ..++++..-| | +..-||.|.. +|-.-.+...|||.|+.|+++.
T Consensus 421 ~~~tf~~F~~~~~~------~ir~~al~----~lpV~~v~thdg~~~G~DG~THq~--iedla~lR~iPnl~V~~PaD~~ 488 (654)
T PLN02790 421 YCATFFVFTDYMRA------AMRLSALS----EAGVIYVMTHDSIGLGEDGPTHQP--IEHLASLRAMPNILMLRPADGN 488 (654)
T ss_pred EEEecHHHHHHHHH------HHHHHHhc----CCCeEEEEECCceeecCCCCCccc--HHHHHHhcCCCCcEEEeCCCHH
Confidence 44333455655543 33211111 2567777766 3 3344899985 8988888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHH
Q psy9579 710 QIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKK 789 (887)
Q Consensus 710 ~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~ 789 (887)
+...+|+.++... ..|+.|-.|+.=...- ...+.++|..|.+ ++.+... ..+.+| +|+++|.++...+++++.
T Consensus 489 E~~~~l~~al~~~-~gP~~irl~R~~~~~~-~~~~~~~~~~G~~--vl~~~~~-~~~~dv--~iia~G~~v~~Al~Aa~~ 561 (654)
T PLN02790 489 ETAGAYKVAVTNR-KRPTVLALSRQKVPNL-PGTSIEGVEKGGY--VISDNSS-GNKPDL--ILIGTGSELEIAAKAAKE 561 (654)
T ss_pred HHHHHHHHHHHcC-CCCEEEEecCCCCCCC-CCCcccccccCcE--EEEeCCC-CCCCCE--EEEEcCHHHHHHHHHHHH
Confidence 9999999998632 3899998776422110 0011233444542 3332210 001455 899999987777776654
Q ss_pred c--CCCcEEEEeccccCCCCHHHHH---HHH-HhcCCCCeEEEEecCCCCCCc
Q psy9579 790 K--NKNDVVIIRIEQLYPFPNEDFL---KIL-KKFRYFEKLIWAQDEPKNQGA 836 (887)
Q Consensus 790 ~--~~~~v~vi~l~~L~P~~~~~i~---~~~-~k~~~~~~~v~~qEe~~n~G~ 836 (887)
+ ..+++.||++.++.|||.+.+. +.+ ++++. ++.=||....|+
T Consensus 562 L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~----vvtiE~~~~~G~ 610 (654)
T PLN02790 562 LRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTA----RVSVEAGSTFGW 610 (654)
T ss_pred HHhcCCceEEEecCccchhhhhHHHHHHhhhccccce----EEEecCccchhH
Confidence 3 2379999999999999999865 566 45433 445555555664
No 36
>PRK12753 transketolase; Reviewed
Probab=99.97 E-value=1.4e-26 Score=277.11 Aligned_cols=454 Identities=15% Similarity=0.136 Sum_probs=277.4
Q ss_pred CCCcccccccccchhHHHHHhhccCCC-----CCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCce
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRDDKF-----GTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIG 337 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~~~~-----~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g 337 (887)
...|+|...++|+|+|+|.++.+..-+ -.+..++|++|||++ .+|++||++|+|+. |+||-+|+||.||+++
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel-~EG~~~EA~~~A~~--~kL~nLi~ivd~N~~~ 188 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCL-MEGISHEVCSLAGT--LGLGKLIGFYDHNGIS 188 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCcc-ccHHHHHHHHHHHH--HCCCCEEEEEECCCCc
Confidence 457889999999999999998753111 125789999999999 99999999999999 9999789999999999
Q ss_pred eccCCCCcccCCcccccccccCCcEEE-EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCC-CC-CCh
Q psy9579 338 FTTSPNDLRSTLYCTDIGKIIEAPVFH-VNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTP-SL-TQP 414 (887)
Q Consensus 338 ~ST~~~~~rss~~~sd~Ak~~giP~~~-VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP-~~-tqp 414 (887)
++++..+.. ...+.++.++||++++. |||+|++++++|++.|.+ ..++|++|++.|++-.|++...++ .+ ..|
T Consensus 189 i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e~~~~~H~~~ 264 (663)
T PRK12753 189 IDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNKAGKEESHGAP 264 (663)
T ss_pred CCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcccCCCCccCCC
Confidence 999988755 56788999999999995 999999999999998875 357899999999999999843222 11 001
Q ss_pred HhhHHHhhCCCHHHHHHHHHHHcCC------CCHHHHHHHHH-----HHHHHHHHHHHHhhcCCCCCCccCccccccccc
Q psy9579 415 LMYKKIFKHPGIRELYSNKLKIQKI------LTKNESENMIK-----EFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFL 483 (887)
Q Consensus 415 ~~Yr~i~~~~dpi~~y~~~Li~~Gi------~t~~e~~~i~~-----~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~ 483 (887)
. ..+-+....+.| |. +.++..+.++. ...++-++.++..++..|
T Consensus 265 l-------~~~~~~~~~~~l---~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p--------------- 319 (663)
T PRK12753 265 L-------GEEEVALTRQKL---GWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYP--------------- 319 (663)
T ss_pred C-------CHHHHHHHHHHh---CCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCH---------------
Confidence 0 011112222222 21 11111111100 000000000111110000
Q ss_pred cCCCCCCCCCccCHHHHHHHHHHhc-cCCCCCcchhHHHHHHHHHHhhhcCCCcc--cHHHHHHHHHhHHhhcCCcEEEe
Q psy9579 484 KNGYIDNCNTSISLEKLKFLSKKIT-NIPKGFKLHKLVKKILKDRVEMGCGKLNV--DWGMAEHLAYASLVISGYGVRLS 560 (887)
Q Consensus 484 ~~~~~~~~~t~~~~~~l~~i~~~~~-~~P~~f~~h~~v~~~~~~R~~m~~~~~~i--dw~~aE~lA~~sll~~~~~vrl~ 560 (887)
+..+++.+.+. .+|+++. ..+.+.+. ++...+..+ .-+..+.| ..+....+++.+.
T Consensus 320 --------------~~~~~~~~~~~~~~p~~~~--~~~~~~~~---~~~~~~~~~a~r~~~g~~L--~~l~~~~p~lv~~ 378 (663)
T PRK12753 320 --------------ELAAEFTRRMSGGLPKDWE--KKTQKYIN---ELQANPAKIATRKASQNTL--EAYGPLLPELLGG 378 (663)
T ss_pred --------------HHHHHHHHHhcCCCChhHH--HHHHHHHH---HhhccccccHHHHHHHHHH--HHHHhhCCCeEEE
Confidence 00001111110 0121110 00000000 000010111 11122222 3455678898888
Q ss_pred cccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhcc-CCCCCceEEeee
Q psy9579 561 GQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFST-ASPNTLTIWEAQ 639 (887)
Q Consensus 561 GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~-~~~~~l~i~E~q 639 (887)
.-|+..-| ...+.-...+.+++ +.|.+|.=|+|.+.+|++.|+|+ .|.++. =.-
T Consensus 379 sADl~~S~---------------------~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~---~~t 433 (663)
T PRK12753 379 SADLAPSN---------------------LTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPY---TAT 433 (663)
T ss_pred cccccccc---------------------CcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEE---EEe
Confidence 88886521 11011111233333 45999999999999999999999 666643 355
Q ss_pred ccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-c--CCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHH
Q psy9579 640 FGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-G--YEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLR 716 (887)
Q Consensus 640 FgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G--~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr 716 (887)
|+=|+. -++||+..++-.+ .++++..=| | ++.-||.|.. +|-.-.+...|||.|+.|+++.+...+++
T Consensus 434 f~~F~~---r~~~qir~~a~~~----l~V~~v~thdg~~~G~DG~THq~--iedla~lR~iPn~~v~~PaD~~E~~~~~~ 504 (663)
T PRK12753 434 FLMFVE---YARNAARMAALMK----ARQIMVYTHDSIGLGEDGPTHQP--VEQLASLRLTPNFSTWRPCDQVEAAVAWK 504 (663)
T ss_pred hHHHHH---HHHHHHHHHHhcC----CCeEEEEeCCCcccCCCCccccc--HHHHHHHhcCCCCEEEccCCHHHHHHHHH
Confidence 666653 4588876433222 355554333 4 4344899975 89888888999999999999999999999
Q ss_pred HHHhCCCCCcEEEEccccccccCCCC-CccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHc--CCC
Q psy9579 717 YQIIRPIRKPLIIITPKSLLRKKEAS-STLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKK--NKN 793 (887)
Q Consensus 717 ~q~~~~~r~Plv~~~pK~Llr~~~~~-s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~~~ 793 (887)
.++... ..|+.+..++.=....... ....++..|. .++.+.. .+.+| +|+++|.+....++|++++ ..+
T Consensus 505 ~al~~~-~gP~~irl~R~~~~~~~~~~~~~~~~~~G~--~vl~~~~---~~~dv--~iia~Gs~v~~al~Aa~~L~~~gi 576 (663)
T PRK12753 505 LAIERH-NGPTALILSRQNLAQQERTPEQVKNIARGG--YILKDSG---GKPDL--ILIATGSEVEITLQAAEKLTAEGR 576 (663)
T ss_pred HHHhcC-CCCEEEEecCCCCCCCCCcccchhhccCCc--EEEeccC---CCCCE--EEEEeCHHHHHHHHHHHHHHhcCC
Confidence 998731 3898887665311100000 0112233343 2333211 12355 8999999877777766543 237
Q ss_pred cEEEEeccccCCCCHHHH
Q psy9579 794 DVVIIRIEQLYPFPNEDF 811 (887)
Q Consensus 794 ~v~vi~l~~L~P~~~~~i 811 (887)
++.||++.++.|||.+.+
T Consensus 577 ~~~Vv~~~~~kp~d~~~~ 594 (663)
T PRK12753 577 NVRVVSMPSTDIFDAQDE 594 (663)
T ss_pred CcEEEECCcCCccchhHH
Confidence 999999999999999987
No 37
>PRK12754 transketolase; Reviewed
Probab=99.96 E-value=7.9e-27 Score=278.02 Aligned_cols=444 Identities=14% Similarity=0.136 Sum_probs=272.1
Q ss_pred CCCcccccccccchhHHHHHhhccC--CCC---CceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCce
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRDD--KFG---TQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIG 337 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~~--~~~---~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g 337 (887)
...+||...++|+|+|+|.++.+.. +.+ .+..++|++|||.+ .||++||++|+|+. |+||-+|+||.||+|+
T Consensus 112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel-~EG~~~EA~~~A~~--~kL~nLi~ivD~N~~~ 188 (663)
T PRK12754 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCM-MEGISHEVCSLAGT--LKLGKLIAFYDDNGIS 188 (663)
T ss_pred cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchh-hchHHHHHHHHHHH--hCCCCEEEEEEcCCCc
Confidence 3467899999999999999987621 111 26789999999999 99999999999999 9999789999999999
Q ss_pred eccCCCCcccCCcccccccccCCcEEE-EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCC-CCCCCC-C--
Q psy9579 338 FTTSPNDLRSTLYCTDIGKIIEAPVFH-VNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNE-QDTPSL-T-- 412 (887)
Q Consensus 338 ~ST~~~~~rss~~~sd~Ak~~giP~~~-VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne-~DdP~~-t-- 412 (887)
++++++++. ...+.+++++||+++++ |||+|++++.+|.+.|.+ ..++|++|++.|++-.|.+. .+.+.. .
T Consensus 189 idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~ 264 (663)
T PRK12754 189 IDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAP 264 (663)
T ss_pred cCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCccccCCCccccCCC
Confidence 999998876 57889999999999999 899999999988877753 25889999999999999873 332211 0
Q ss_pred -ChHhhHHHhhC-----------CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCcccccc
Q psy9579 413 -QPLMYKKIFKH-----------PGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWA 480 (887)
Q Consensus 413 -qp~~Yr~i~~~-----------~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~ 480 (887)
.+..|+...+. .++...|++ .++| +...+++.+.+++.. +++|. ....|.
T Consensus 265 l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~---~~~~~~w~~~~~~~~-------~~~p~------~~~~~~ 326 (663)
T PRK12754 265 LGDAEIALTREQLGWKYAPFEIPSEIYAQWDA--KEAG---QAKESAWNEKFAAYA-------KAYPQ------EAAEFT 326 (663)
T ss_pred CCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH--hhhc---hHHHHHHHHHHHHHH-------HHCHH------HHHHHH
Confidence 11222221110 011111111 1111 001111111111110 00110 000011
Q ss_pred ccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcch-hHHH-------HHHHHHHhhhcCCCcccHHHHHHHHHhHHhh
Q psy9579 481 PFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLH-KLVK-------KILKDRVEMGCGKLNVDWGMAEHLAYASLVI 552 (887)
Q Consensus 481 ~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h-~~v~-------~~~~~R~~m~~~~~~idw~~aE~lA~~sll~ 552 (887)
.... ..+|.++... +..+ +-...|. +..++ .-.|..
T Consensus 327 ~~~~-----------------------~~~p~~~~~~~~~~~~~~~~~~~~~atR~-----------~~~~~--L~~la~ 370 (663)
T PRK12754 327 RRMK-----------------------GEMPADFDAKAKEFIAKLQANPAKIASRK-----------ASQNA--IEAFGP 370 (663)
T ss_pred HHhc-----------------------CCCchhHHHHHHHHhhhhcccccchHHHH-----------HHHHH--HHHHHh
Confidence 0000 0112111100 0000 0001111 11222 123445
Q ss_pred cCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhcc-CCCC
Q psy9579 553 SGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFST-ASPN 631 (887)
Q Consensus 553 ~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~-~~~~ 631 (887)
.++++.+..-|....|. ..+.-+..+.++| +.|.+|-=|+|.+.+|++.|+|+ .|.+
T Consensus 371 ~~~~lv~~sADl~~s~~---------------------~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~ 428 (663)
T PRK12754 371 LLPEFLGGSADLAPSNL---------------------TLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFL 428 (663)
T ss_pred hCCCEEEEeCCcccccC---------------------ccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCe
Confidence 67888877778764221 1111122333444 45999999999999999999999 4555
Q ss_pred CceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-c--CCCCCccccCchHHHHHhhhcCCCcEEEcCCCH
Q psy9579 632 TLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-G--YEGQGPEHSSARLERFLQLCANNNIQIVQPTSA 708 (887)
Q Consensus 632 ~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G--~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstp 708 (887)
+.. .-|.=|+. -+.||+..++-.+ .++++..-| | +..-||.|.. +|-.--+...|||.|+.|+++
T Consensus 429 Pf~---~tf~~F~~---r~~~qir~~a~~~----l~V~~v~th~gi~~G~DG~THq~--iEdla~lR~iPn~~V~~PaD~ 496 (663)
T PRK12754 429 PYT---STFLMFVE---YARNAVRMAALMK----QRQVMVYTHDSIGLGEDGPTHQP--VEQVASLRVTPNMSTWRPCDQ 496 (663)
T ss_pred EEE---EeeHHHHH---HHHHHHHHHHHcC----CCeEEEEECCccccCCCCCCccc--HHHHHHHhcCCCcEEecCCCH
Confidence 433 44555542 3477765433222 455555555 3 3344899975 898888889999999999999
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCc-cccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHH
Q psy9579 709 SQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASST-LMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFR 787 (887)
Q Consensus 709 a~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~-~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~ 787 (887)
.+...+++.++... ..|+.+-.++.-+........ ..++..|. .++.+.. ...+| +|+++|.+....++++
T Consensus 497 ~E~~~~~~~a~~~~-~gP~yirl~R~~~p~~~~~~~~~~~~~~G~--~vl~~~~---~~~dv--~iiatGs~v~~Al~Aa 568 (663)
T PRK12754 497 VESAVAWKYGVERQ-DGPTALILSRQNLAQQERTEEQLANIARGG--YVLKDCA---GQPEL--IFIATGSEVELAVAAY 568 (663)
T ss_pred HHHHHHHHHHHhCC-CCCEEEEeCCCCCCCCCCccchhhhcccCc--EEEEecC---CCCCE--EEEEECHHHHHHHHHH
Confidence 99999999998752 379887665432111000000 12233343 2332211 11255 8999999877777776
Q ss_pred HHc--CCCcEEEEeccccCCCCHH
Q psy9579 788 KKK--NKNDVVIIRIEQLYPFPNE 809 (887)
Q Consensus 788 ~~~--~~~~v~vi~l~~L~P~~~~ 809 (887)
+.+ ..+++.||++-++.|||.+
T Consensus 569 ~~L~~~Gi~~~Vvs~~s~kp~d~q 592 (663)
T PRK12754 569 EKLTAEGVKARVVSMPSTDAFDKQ 592 (663)
T ss_pred HHHHhhCCCcEEEEcCccCcCCCC
Confidence 543 1379999999999999998
No 38
>PTZ00089 transketolase; Provisional
Probab=99.96 E-value=3e-26 Score=274.58 Aligned_cols=475 Identities=13% Similarity=0.100 Sum_probs=282.7
Q ss_pred cCCCcccccccccchhHHHHHhhccC--C---CCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDD--K---FGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI 336 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~--~---~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~ 336 (887)
....|++...++|+|.|+|.++.+.. + ...+..++|++|||++ .+|++||+||+|+. |+||-+|+||.||++
T Consensus 113 ~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l-~eG~~~EAl~~A~~--~~L~nLi~i~d~N~~ 189 (661)
T PTZ00089 113 VTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCL-QEGVSQEALSLAGH--LGLEKLIVLYDDNKI 189 (661)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccch-hhHHHHHHHHHHHH--hCCCCEEEEEECCCc
Confidence 34578999999999999999987531 0 1226789999999999 99999999999999 999878999999999
Q ss_pred eeccCCCCcccCCcccccccccCCcEEEE-cCC-CHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCCh
Q psy9579 337 GFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGD-DPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQP 414 (887)
Q Consensus 337 g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~-D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp 414 (887)
+++++...+. ...+.++.++||+.++.| ||+ |+++++.|++.|.+.. ++|++|++.|+|-.||.+.|...+-.
T Consensus 190 ~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~---~~P~~I~~~T~kG~G~~~e~~~~~H~- 264 (661)
T PTZ00089 190 TIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSK---GKPKLIIVKTTIGYGSSKAGTEKVHG- 264 (661)
T ss_pred ccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcC---CCcEEEEEEeeecCCCCcCCCCCccC-
Confidence 9999988653 467788999999999999 999 9999999999887543 78999999999999987776432210
Q ss_pred HhhHHHhhCCCHHHHHHHHHHHc----CCCCHHHHHHHHH------HHHHHHHHHHHHhhcCCCCCCccCcccccccccc
Q psy9579 415 LMYKKIFKHPGIRELYSNKLKIQ----KILTKNESENMIK------EFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLK 484 (887)
Q Consensus 415 ~~Yr~i~~~~dpi~~y~~~Li~~----Gi~t~~e~~~i~~------~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~ 484 (887)
.+. ..+-+..+.+.|--. =.++++..+.... .......+.+....+..|
T Consensus 265 -~~~----~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~---------------- 323 (661)
T PTZ00089 265 -APL----GDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFP---------------- 323 (661)
T ss_pred -CCC----CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCH----------------
Confidence 000 001111111111000 0001111100000 000000111111100000
Q ss_pred CCCCCCCCCccCHHHHHHHHHHhc-cCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEeccc
Q psy9579 485 NGYIDNCNTSISLEKLKFLSKKIT-NIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQD 563 (887)
Q Consensus 485 ~~~~~~~~t~~~~~~l~~i~~~~~-~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeD 563 (887)
+.-+.+...+. .+|.++. ..+.+. ....++ .....+..+.| ..+....+.+...-=|
T Consensus 324 -------------~~~~~l~~~~~~~~~~~~~--~~~~~~-~~~~~~----~a~R~~~g~~L--~~la~~~~~~~~~saD 381 (661)
T PTZ00089 324 -------------KEAQAIERRFKGELPPGWE--KKLPKY-TTNDKA----IATRKASENVL--NPLFQILPELIGGSAD 381 (661)
T ss_pred -------------HHHHHHHHHhccCCchhhh--hhhhhh-cccCcc----hHHHHHHHHHH--HHHHhhCCCeEEEECC
Confidence 00000000000 1121110 000000 000000 00111222222 2334456777655557
Q ss_pred CCCCcccccceeeeccccccccccCCCcEEecCCCccccCCc-eEEeccccchHHHHHHHHhhcc-CCCCCceEEeeecc
Q psy9579 564 SGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAK-FHIINSILSEEAILGFEYGFST-ASPNTLTIWEAQFG 641 (887)
Q Consensus 564 v~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~-~~V~nspLsE~ailG~~~G~a~-~~~~~l~i~E~qFg 641 (887)
+..-|+. +.+ .. ..+.+.+ + .|.+|-=|+|.+.++++-|+|+ .|.++. =.-|.
T Consensus 382 l~~s~~~-------~~~--------~~------~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~---~~tf~ 436 (661)
T PTZ00089 382 LTPSNLT-------RPK--------EA------NDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHGGFIPF---GATFL 436 (661)
T ss_pred CCcccCc-------CCc--------cc------ccccccC-CCCCeeeeeecHHHHHHHHHHHHHcCCCeEE---EEehH
Confidence 6543320 000 00 1222333 4 5999999999999999999999 666643 36677
Q ss_pred ccccchhHHHHHHHhhHHHHhcCccCcEEEecc---cCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHH
Q psy9579 642 DFANGAQVIIDQFISSSEEKWGRISGLTLMLPH---GYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQ 718 (887)
Q Consensus 642 DF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~---G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q 718 (887)
=|+. =++||+-..+-. .-++++..=| |+..-||.|.. +|-.-.+...|||.|+.|+++.++..+|+.+
T Consensus 437 ~Fl~---Ra~dqir~~al~----~lpV~~v~thdg~~~g~DG~THq~--iedia~lR~iPn~~V~~PaD~~E~~~~l~~a 507 (661)
T PTZ00089 437 NFYG---YALGAVRLAALS----HHPVIYVATHDSIGLGEDGPTHQP--VETLALLRATPNLLVIRPADGTETSGAYALA 507 (661)
T ss_pred HHHH---HHHHHHHHHHhc----CCCeEEEEeCCceecCCCCCCccc--HHHHHHHhcCCCcEEEecCCHHHHHHHHHHH
Confidence 7764 458994332211 2456666533 44445999985 8988888899999999999999999999999
Q ss_pred HhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCC---CCceEEEEEechHHHHHHHHHHHcC-CCc
Q psy9579 719 IIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDP---KKIKRIIACSGKIYYDLFNFRKKKN-KND 794 (887)
Q Consensus 719 ~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~---~~v~r~i~~~G~~~~~l~~~~~~~~-~~~ 794 (887)
+.. ...|+.|-.|+.=...-. ..+ .++ ++..+.+++++ .+| +|+++|.++...+++++.+. .++
T Consensus 508 l~~-~~gP~~irl~R~~~~~~~-~~~-~~~-------~~~g~~vl~~~~~~~dv--~iia~G~~v~~Al~Aa~~L~~Gi~ 575 (661)
T PTZ00089 508 LAN-AKTPTILCLSRQNTPPLP-GSS-IEG-------VLKGAYIVVDFTNSPQL--ILVASGSEVSLCVEAAKALSKELN 575 (661)
T ss_pred HHc-CCCCEEEEecCCCCCCcC-CCc-ccc-------ccCceEEEeccCCCCCE--EEEeeCHHHHHHHHHHHHHhcCCC
Confidence 843 238999987654110000 000 011 11111122232 455 89999998887777766431 379
Q ss_pred EEEEeccccCCCCHHHHHHH--HHhcCCCCeEEEEecCCCCCC
Q psy9579 795 VVIIRIEQLYPFPNEDFLKI--LKKFRYFEKLIWAQDEPKNQG 835 (887)
Q Consensus 795 v~vi~l~~L~P~~~~~i~~~--~~k~~~~~~~v~~qEe~~n~G 835 (887)
+.||++.++.|||.+.+... |...+.. -+++=|+....|
T Consensus 576 ~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~--~~vtiE~~~~~g 616 (661)
T PTZ00089 576 VRVVSMPCWELFDQQSEEYQQSVLPSGGV--PVLSVEAYVSFG 616 (661)
T ss_pred eEEEeCCCccHHHHHHHHHHHHhcCCCCC--ceEeHHhhHHHH
Confidence 99999999999999986644 2221221 245555655555
No 39
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.93 E-value=3.7e-26 Score=232.41 Aligned_cols=177 Identities=24% Similarity=0.261 Sum_probs=147.8
Q ss_pred cccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccch
Q psy9579 536 NVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSE 615 (887)
Q Consensus 536 ~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE 615 (887)
+++|..|-..|+..+++++++|+++|+|++.|+|. ...++...+|+.|++|+||||
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~------------------------~~~~~~~~~~~~r~i~~gIaE 57 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFG------------------------VTFGLAFPFGPGRFINTGIAE 57 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTS------------------------TTTTHHBHHTTTTEEE--S-H
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhh------------------------hhhhccccCCCceEEecCcch
Confidence 58888999999999999999999999999988872 123566667788999999999
Q ss_pred HHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhh
Q psy9579 616 EAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLC 695 (887)
Q Consensus 616 ~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~ 695 (887)
.+++|++.|+|+.|+ .+++||.||+||+..||+.....+.+..+.|+....++++.|.|+.+.|+.|+|...+.+|+
T Consensus 58 ~~~vg~a~GlA~~G~-~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~-- 134 (178)
T PF02779_consen 58 QNMVGMAAGLALAGG-LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDEAILR-- 134 (178)
T ss_dssp HHHHHHHHHHHHHSS-SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSSSHHHHHH--
T ss_pred hhccceeeeeeeccc-ccceeEeeccccccccchhhhhhhhhhhhcccceecceeecCcccccccccccccccccccc--
Confidence 999999999999995 35899999999999887666444444467788777788999999999999999999999996
Q ss_pred cCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccC
Q psy9579 696 ANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKK 739 (887)
Q Consensus 696 ~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~ 739 (887)
..|||+|++||||.|++++||.++.++.++|++|++||.+|+|+
T Consensus 135 ~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~~ 178 (178)
T PF02779_consen 135 SIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPHQ 178 (178)
T ss_dssp TSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-T
T ss_pred cccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCCC
Confidence 45799999999999999999999995556999999999999885
No 40
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.91 E-value=1.2e-24 Score=219.45 Aligned_cols=152 Identities=23% Similarity=0.321 Sum_probs=131.1
Q ss_pred HHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccC
Q psy9579 549 SLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTA 628 (887)
Q Consensus 549 sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~ 628 (887)
.++.++++|++.|+|++. .+++|..++++.++|+.+|++|++|+|..++|++.|+|+.
T Consensus 9 ~~~~~~~~vv~l~~D~~~----------------------~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~ 66 (167)
T cd07036 9 EEMERDPRVVVLGEDVGD----------------------YGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMN 66 (167)
T ss_pred HHHhcCCCEEEECccccc----------------------CCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHc
Confidence 357899999999999975 3566777889999998889999999999999999999999
Q ss_pred CCCCceEEeeeccccccchhHHHHHHHhhHHHHhc------CccCcEEEecccC-CCCCccccCchHHHHHhhhcCCCcE
Q psy9579 629 SPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWG------RISGLTLMLPHGY-EGQGPEHSSARLERFLQLCANNNIQ 701 (887)
Q Consensus 629 ~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~------~~sglv~~lP~G~-~g~GpeHSs~r~Er~lq~~~~~nl~ 701 (887)
|.+ ||||+||++|+..| +||+.++. ++|+ +..+++++.|+|. .+.|++||. ..|++|. ..|||+
T Consensus 67 G~~--pi~~~~~a~Fl~ra---~dQi~~~~-a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~-~~~a~lr--~iPg~~ 137 (167)
T cd07036 67 GLR--PIVEIMFADFALPA---FDQIVNEA-AKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQ-SLEAWFA--HIPGLK 137 (167)
T ss_pred CCE--EEEEeehHHHHHHH---HHHHHHHH-HHHHHhcCCCccCCEEEEEeCCCCCCcChhhhh-hHHHHHh--cCCCCE
Confidence 975 89999999999765 99987663 5544 3578999999875 457898875 5789986 457999
Q ss_pred EEcCCCHhHHHHHHHHHHhCCCCCcEEEEccc
Q psy9579 702 IVQPTSASQIFHLLRYQIIRPIRKPLIIITPK 733 (887)
Q Consensus 702 V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK 733 (887)
|++||+|.|++++||+++..+ .|+||+|||
T Consensus 138 V~~Psd~~e~~~~l~~~~~~~--~P~~~~e~k 167 (167)
T cd07036 138 VVAPSTPYDAKGLLKAAIRDD--DPVIFLEHK 167 (167)
T ss_pred EEeeCCHHHHHHHHHHHHhCC--CcEEEEecC
Confidence 999999999999999999876 899999998
No 41
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.88 E-value=1.2e-19 Score=207.97 Aligned_cols=521 Identities=17% Similarity=0.190 Sum_probs=319.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccc-CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHh
Q psy9579 138 NFSKEKKKNILFLLTAAEEFEHYLHNRYV-GQKRFSL-EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNIL 215 (887)
Q Consensus 138 ~ls~e~~~~~l~~M~~ar~fE~~l~~~~~-~~krfg~-eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~ 215 (887)
.+|.+++.++-. ++-+++.+.-. .+.-+|. .|-=-+.+|+..+++ .-.+-+++=..|-.-.|=| .-
T Consensus 16 ~ls~~eL~~La~------EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~----sP~D~~IwDVgHQaYpHKi--LT 83 (627)
T COG1154 16 KLSIEELPQLAD------EIREFLLEVVSATGGHLGSNLGVVELTIALHYVFD----SPKDKLIWDVGHQAYPHKI--LT 83 (627)
T ss_pred hCCHHHHHHHHH------HHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhC----CCCCCeEEecCcccchhHH--hc
Confidence 567777665433 33344444333 3333443 663334456755544 2334566666788777777 44
Q ss_pred CCCHHHHHH---HccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCc
Q psy9579 216 GKKPKELFD---EFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQ 292 (887)
Q Consensus 216 G~~~~~if~---e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~ 292 (887)
|.. +-|. ++-|-... . .+..|-|= .+...|-.+-.+.|+|.|.|+...+. +
T Consensus 84 GR~--e~f~tlRq~~GlsGf-------------~----~r~ESe~D--~f~~GHsSTSiSaalG~A~A~~~~g~-----~ 137 (627)
T COG1154 84 GRR--EQFDTLRQKDGLSGF-------------P----KREESEHD--WFGVGHSSTSISAALGMAKARDLKGE-----D 137 (627)
T ss_pred Cch--hhcchhhhcCCCCCC-------------C----CcccCCCc--ccccCchHHHHHHHhhHHHHHHhcCC-----C
Confidence 432 2222 22222211 1 12222222 13446777778889999999999886 7
Q ss_pred eEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC-------CcccCC-c--------------
Q psy9579 293 VLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN-------DLRSTL-Y-------------- 350 (887)
Q Consensus 293 ~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~-------~~rss~-~-------------- 350 (887)
.-+|+++||||. +-|..+|+||-+. ...+.+ +|.|+.+|+-.||.+.- .-|+++ |
T Consensus 138 ~~vvaVIGDGAl-t~GmA~EALN~ag-~~~~~~-~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~ 214 (627)
T COG1154 138 RNVVAVIGDGAL-TGGMAFEALNNAG-ADLKSN-LIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKV 214 (627)
T ss_pred CcEEEEECCccc-cchHHHHHHhhhh-hccCCC-EEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhh
Confidence 789999999999 9999999999998 227788 99999999999987642 112221 0
Q ss_pred ----------cc----------ccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCC
Q psy9579 351 ----------CT----------DIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTP 409 (887)
Q Consensus 351 ----------~s----------d~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP 409 (887)
.. -.-+.+|+..+ -|||+|.+++..+.+.| |+.++|+||+++|-.-.|=..+
T Consensus 215 ~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~----kd~~gPvllHv~T~KGKGY~pA--- 287 (627)
T COG1154 215 GPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNA----KDLKGPVLLHVVTKKGKGYKPA--- 287 (627)
T ss_pred chHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHH----hcCCCCEEEEEEecCCCCCChh---
Confidence 00 02223454444 58999999998876655 5689999999998543332211
Q ss_pred CCCChHhhHHHhhCCCHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccC
Q psy9579 410 SLTQPLMYKKIFKHPGIRELYSNKL----KIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKN 485 (887)
Q Consensus 410 ~~tqp~~Yr~i~~~~dpi~~y~~~L----i~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~ 485 (887)
..||.. |.--- ++.| ..++.. . ....|..++
T Consensus 288 -------------E~d~~~-~H~v~~f~~~~tg--------------------------~~~~~~-~--~~~sys~vf-- 322 (627)
T COG1154 288 -------------EEDPIK-YHGVGPFDPIETG--------------------------QSKKSK-P--SAPSYTKVF-- 322 (627)
T ss_pred -------------hcChhh-ccCCCCCCccccC--------------------------ccCCCC-C--CCCCHHHHH--
Confidence 122222 10000 0000 000000 0 000011111
Q ss_pred CCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCC
Q psy9579 486 GYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSG 565 (887)
Q Consensus 486 ~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~ 565 (887)
.+.|.+ +..++.+|+-.=--..
T Consensus 323 -----------~~~L~~-----------------------------------------------~a~~d~~ivaITaAM~ 344 (627)
T COG1154 323 -----------GDTLCE-----------------------------------------------LAAKDEKIVAITAAMP 344 (627)
T ss_pred -----------HHHHHH-----------------------------------------------HHhhCCCeEEEecCCC
Confidence 011111 1223444432211111
Q ss_pred CCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeecccccc
Q psy9579 566 RGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFAN 645 (887)
Q Consensus 566 rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~ 645 (887)
.| || |..+.++| |.|.||.=|+|+-.+-|+-|+|+.|.++++ +.+--|..
T Consensus 345 ~g---------------------tG-----L~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvv---aIYSTFLQ 394 (627)
T COG1154 345 EG---------------------TG-----LVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVV---AIYSTFLQ 394 (627)
T ss_pred CC---------------------CC-----hHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEE---EEecHHHH
Confidence 12 22 33444554 789999999999999999999999999754 78888987
Q ss_pred chhHHHHHHHhhHHHHhcCccCcEEEec-ccCCC-CCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCC
Q psy9579 646 GAQVIIDQFISSSEEKWGRISGLTLMLP-HGYEG-QGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPI 723 (887)
Q Consensus 646 ~Aq~~~Dq~i~~~~~kw~~~sglv~~lP-~G~~g-~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~ 723 (887)
-| +||++--- + .+.-++++-+= .|.-| -||.|.-.--=.|| +..|||.|++|++.....++|+.++..+
T Consensus 395 RA---YDQliHDv-a--iqnLPV~faIDRAGivG~DG~TH~G~fDls~l--~~iPnmvi~aP~de~el~~ml~ta~~~~- 465 (627)
T COG1154 395 RA---YDQLIHDV-A--IQNLPVTFAIDRAGIVGADGPTHQGLFDLSFL--RCIPNMVIMAPRDEEELRQMLYTALAQD- 465 (627)
T ss_pred HH---HHHHHHHH-H--hccCCeEEEEecCcccCCCCCccccHHHHHHH--hcCCCcEEecCCCHHHHHHHHHHHHhcC-
Confidence 76 99987431 1 11223444332 56555 48888865444555 7889999999999999999999999865
Q ss_pred CCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcC--CCcEEEEecc
Q psy9579 724 RKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKN--KNDVVIIRIE 801 (887)
Q Consensus 724 r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~--~~~v~vi~l~ 801 (887)
..|+.|=-|+----. ...+ .++ -...+++..+++++++| .|++.|.++...+++++++. .+++.|||.|
T Consensus 466 ~gP~AiRyPrg~~~~--~~~~-~~~----~~~~~Gk~~i~~~G~~v--ail~~G~~~~~al~vae~L~~~Gi~~TVvd~r 536 (627)
T COG1154 466 DGPVAIRYPRGNGVG--VILT-PEL----EPLEIGKGELLKEGEKV--AILAFGTMLPEALKVAEKLNAYGISVTVVDPR 536 (627)
T ss_pred CCCeEEEecCCCCCC--CCcc-ccc----ccccccceEEEecCCcE--EEEecchhhHHHHHHHHHHHhcCCCcEEEcCe
Confidence 259999777542110 0000 001 11223444445578888 89999998888777776542 2799999999
Q ss_pred ccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCC
Q psy9579 802 QLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSC 861 (887)
Q Consensus 802 ~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~ 861 (887)
.+.|+|.+.|.+..++... +|.++|.-..+|+++.|...+.+.=. ..+++..|=|+
T Consensus 537 fvkPlD~~ll~~La~~h~~---~vtlEe~~~~GG~Gs~v~efl~~~~~-~~~v~~lglpd 592 (627)
T COG1154 537 FVKPLDEALLLELAKSHDL---VVTLEENVVDGGFGSAVLEFLAAHGI-LVPVLNLGLPD 592 (627)
T ss_pred ecCCCCHHHHHHHHhhcCe---EEEEecCcccccHHHHHHHHHHhcCC-CCceEEecCCh
Confidence 9999999999988888766 78888888899999999998877411 14555666554
No 42
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.87 E-value=9.6e-20 Score=220.29 Aligned_cols=501 Identities=13% Similarity=0.114 Sum_probs=301.7
Q ss_pred CcccccccccchhHHHHHhhccC--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDD--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSP 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~ 342 (887)
-.||.-.+.|+|.|+|.++.... ....+.=++|+.|||-+ .||.+||++.+|+- ++|..+|+||.+|.+.+..+.
T Consensus 189 GSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl-~EG~~wEA~~~Aa~--~kLdNLi~IvD~N~~qlDG~t 265 (889)
T TIGR03186 189 GSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEM-DEPESIGALSLAAR--ERLDNLVFVINCNLQRLDGPV 265 (889)
T ss_pred CCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhh-ccHHHHHHHHHHHH--hCCCCEEEEEeCCCCccCCcc
Confidence 35677788999999999865421 12235669999999999 99999999999999 999999999999999999988
Q ss_pred CCccc-CCcccccccccCCcEEEE--------------------------------------------------------
Q psy9579 343 NDLRS-TLYCTDIGKIIEAPVFHV-------------------------------------------------------- 365 (887)
Q Consensus 343 ~~~rs-s~~~sd~Ak~~giP~~~V-------------------------------------------------------- 365 (887)
+.... ...+.++.+++|.-++.|
T Consensus 266 ~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv 345 (889)
T TIGR03186 266 RGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALV 345 (889)
T ss_pred ccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHh
Confidence 76322 457888999999999999
Q ss_pred -------------cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCC-CCChHhhHHHhhCCCHHHHHH
Q psy9579 366 -------------NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPS-LTQPLMYKKIFKHPGIRELYS 431 (887)
Q Consensus 366 -------------dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~-~tqp~~Yr~i~~~~dpi~~y~ 431 (887)
+|+|+.+++.|.+.|++. -++|++|.+.|.--+|-+..-+.. -+.-. -.-..+-+..++
T Consensus 346 ~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTvIla~TvkG~G~~~~g~~~~~~H~~----~~l~~e~~~~~r 418 (889)
T TIGR03186 346 AHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFGMGAIGQGRMTTHQQ----KKLDVEALLAFR 418 (889)
T ss_pred hcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCCcccCccccccCc----CcCCHHHHHHHH
Confidence 699999999999998853 258999999998888764433211 00000 000113333444
Q ss_pred HHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhc-c
Q psy9579 432 NKLKIQKI-LTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKIT-N 509 (887)
Q Consensus 432 ~~Li~~Gi-~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~-~ 509 (887)
+++ |+ +++++++. ..++.+. +.....+.|.+-.+.+. .
T Consensus 419 ~~~---g~~~~de~~~~--------------------------------~~~~~~~-----~~s~~~~~l~~~r~~l~g~ 458 (889)
T TIGR03186 419 DRF---RLPLSDADVEQ--------------------------------LKFYKPD-----EDSAEMRYLHARRAALGGY 458 (889)
T ss_pred HHc---CCCCChHHhhc--------------------------------ccccCCC-----CCCHHHHHHHHHHHHcCCC
Confidence 443 22 33333322 1110000 00000011111111111 0
Q ss_pred CCCCCc------chhHH---HHHHHHHHhhhcCCCcccHHHHHHHHHhHH---hh----cCCcEEEecccCCC-----Cc
Q psy9579 510 IPKGFK------LHKLV---KKILKDRVEMGCGKLNVDWGMAEHLAYASL---VI----SGYGVRLSGQDSGR-----GT 568 (887)
Q Consensus 510 ~P~~f~------~h~~v---~~~~~~R~~m~~~~~~idw~~aE~lA~~sl---l~----~~~~vrl~GeDv~r-----Gt 568 (887)
+|.--. ..|.+ ..+... ..++. ++-.+||+.+ |. -+.+|+-.--|+.| |-
T Consensus 459 ~p~r~~~~~~~~~~p~~~~~~~~~~~-----~~~~~----~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~ 529 (889)
T TIGR03186 459 LPRRRTAATHALAVPALPSWGRFALD-----AEGKE----MSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANL 529 (889)
T ss_pred CCCCCCCCccccCCCCcchhhhhhcc-----CCCCc----ccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhh
Confidence 000000 00110 011100 00011 1234556555 22 26678888889887 33
Q ss_pred ccccceeeeccccccccccCCCcEEecCCC--c--cccCCceEEeccccchHHHHH--HHHhhccC--CC--CCceEEee
Q psy9579 569 FSHRHAILYNQDYQYSEKETDISTYIPLHN--V--SKNQAKFHIINSILSEEAILG--FEYGFSTA--SP--NTLTIWEA 638 (887)
Q Consensus 569 FshRHav~~dq~~~~~~~~~~~~~~~pl~~--l--~~~~g~~~V~nspLsE~ailG--~~~G~a~~--~~--~~l~i~E~ 638 (887)
|.+ .=++.. .|..|.|-.. + ..+--+.|++|.=|+|++.+| .+.|.|++ |. .++.++=+
T Consensus 530 f~~--~gi~~~---------~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya 598 (889)
T TIGR03186 530 FRQ--VGIYSP---------LGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYS 598 (889)
T ss_pred hcc--ccccCc---------ccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehH
Confidence 411 111111 2334555432 1 123357899999999999999 88885555 44 44433334
Q ss_pred eccccccchhHHHHHHHhhHHHHhcCccCcEEEecccC---CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHH
Q psy9579 639 QFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY---EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLL 715 (887)
Q Consensus 639 qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~---~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlL 715 (887)
+ |.. |=++||+-+++-. ...+..+=.++|. .+-|+.|.+ +|....+...|||.|+.|+.+.++..++
T Consensus 599 ~---F~~--~Ra~Dqir~a~~~---~a~v~lvG~~aG~tTlg~eG~tHq~--~eDial~r~iPn~tv~~PaDa~E~a~iv 668 (889)
T TIGR03186 599 M---FGF--QRIGDLIWAAADQ---RARGFLIGATSGKTTLGGEGLQHQD--GTSHLAASTVPNCRAWDPAFAYEVAVIV 668 (889)
T ss_pred H---hHh--hhHHHHHHHHhhc---CCCcEEEEECCCccCCCCCcccccc--hHhHHHHhhCCCCEEEeCCCHHHHHHHH
Confidence 4 432 3458987765322 1233333446675 344888876 7999999999999999999999999999
Q ss_pred HHHHh---CC-CCCcEEEEccccccccCCCCCcc-cc----CCCCcce--eeccccccccCCCCceEEEEEechHHHHHH
Q psy9579 716 RYQII---RP-IRKPLIIITPKSLLRKKEASSTL-MD----LATGKFN--KIINEIDDIIDPKKIKRIIACSGKIYYDLF 784 (887)
Q Consensus 716 r~q~~---~~-~r~Plv~~~pK~Llr~~~~~s~~-~d----~~~g~f~--~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~ 784 (887)
+..++ .+ ...|+-+ .|.|.+.....+ ++ +..|.-+ .++.++. .++++| +|+++|-+....+
T Consensus 669 ~~~~~rm~~~~~~gp~Yl----Rl~r~~~~~p~~~~~~~~~~~~gi~kg~y~l~~~~--~~g~dV--~LlasG~~v~eAL 740 (889)
T TIGR03186 669 DEGMREMLERQRDEFYYL----TVTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAA--LAAARV--QLLGSGAILGEVQ 740 (889)
T ss_pred HHHHHHHHhcCCCceEEE----EeCCCCCCCCCcCCCcccchhcchhheeeEeeccC--CCCCCE--EEEeccHHHHHHH
Confidence 97665 11 2256655 334443211111 11 2122111 1222110 134556 8999999888888
Q ss_pred HHHHHcC---CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecC---CCCCCchH-------------HHHHHHH
Q psy9579 785 NFRKKKN---KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDE---PKNQGAWP-------------QIKENIL 845 (887)
Q Consensus 785 ~~~~~~~---~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe---~~n~G~~~-------------~i~~~i~ 845 (887)
+|++.+. .+++.|+++-++.||+.+.+. ++++.+ ++-++|. ...+|.+. -+...|.
T Consensus 741 ~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~---l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~ 815 (889)
T TIGR03186 741 AAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQR---LGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIR 815 (889)
T ss_pred HHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCC---cccccccccccHhhhhCCCCCCeeeecchHHHHHHHHH
Confidence 8776432 379999999999999999998 788877 4666655 66777777 5666665
Q ss_pred HhhccCCcEEEecCC
Q psy9579 846 KYLNSTQKLIYVGRS 860 (887)
Q Consensus 846 ~~~~~~~~~~~~gr~ 860 (887)
+..+ .+++.+|=+
T Consensus 816 ~~~p--~~~~~LG~D 828 (889)
T TIGR03186 816 AYVP--RRYVTLGTD 828 (889)
T ss_pred hhCC--CCEEEeccC
Confidence 5443 477777765
No 43
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.83 E-value=6e-18 Score=204.90 Aligned_cols=502 Identities=15% Similarity=0.130 Sum_probs=289.5
Q ss_pred ccccchhHHHHHhhccC--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCccc-
Q psy9579 271 NPVVEGSAKARMERRDD--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRS- 347 (887)
Q Consensus 271 ~Pva~G~A~A~q~~~~~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rs- 347 (887)
.+.|+|.|++.++.... ....+.-++|+.|||-+ .||.+||++.+|+- ++|..+|+||..|...+..+....-.
T Consensus 201 ~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEl-dEg~~~EA~~~A~~--~~LdNLi~ivD~N~q~lDG~v~~~~~~ 277 (891)
T PRK09405 201 PIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEM-DEPESLGAISLAAR--EKLDNLIFVINCNLQRLDGPVRGNGKI 277 (891)
T ss_pred HHHHHHHHHhCccccccccccCCCceEEEEEcchhh-ccHHHHHHHHHHHH--hCCCCEEEEEECCCcccCCcccccccc
Confidence 46788999998854221 12236679999999999 99999999999999 99999999999999999998876322
Q ss_pred CCcccccccccCCcEEEE--------------------------c-----------------------------------
Q psy9579 348 TLYCTDIGKIIEAPVFHV--------------------------N----------------------------------- 366 (887)
Q Consensus 348 s~~~sd~Ak~~giP~~~V--------------------------d----------------------------------- 366 (887)
...+.++.+++|.-++.| |
T Consensus 278 ~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~ 357 (891)
T PRK09405 278 IQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDD 357 (891)
T ss_pred chhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHH
Confidence 457888999999999999 4
Q ss_pred --------CCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCC-CCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHc
Q psy9579 367 --------GDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGH-NEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQ 437 (887)
Q Consensus 367 --------G~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GH-ne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~ 437 (887)
|+|+.+++.|.+.|.+. -++|++|-+.|-.-+|- +....-. .+ |. .
T Consensus 358 ~i~~l~~gGHD~~~i~~A~~~A~~~---~~~PtvIia~TvkG~G~~~~~e~~~---------~~-H~------------~ 412 (891)
T PRK09405 358 DIWALNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGMGEAGEGKN---------IA-HQ------------V 412 (891)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhC---CCCCEEEEEeceecCCCCcccCCCc---------cc-cC------------C
Confidence 99999999999988753 26799999999988887 3222110 01 00 0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhcc-CCCCCcc
Q psy9579 438 KILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITN-IPKGFKL 516 (887)
Q Consensus 438 Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~-~P~~f~~ 516 (887)
+.++++++++.++.+.-.+.+. .++ ..+|..+ .+.....+.+.+-.+.+.. +|.--..
T Consensus 413 ~~l~~e~~~~~r~~~g~~~~d~--~~~-----------~~~~~~~--------~~~s~e~~~l~~~r~~l~g~~p~r~~~ 471 (891)
T PRK09405 413 KKLDLDDLKHFRDRFNIPISDE--QLE-----------KLPYYKP--------GEDSPEIKYLHERRKALGGYLPARRPK 471 (891)
T ss_pred CCCCHHHHHHHHHHcCCCCChh--Hhc-----------cCCCcCC--------CCCCHHHHHHHHHHHHcCCCCCCCCCC
Confidence 1233344333333221111000 000 0011100 0000000111111111110 0100000
Q ss_pred hhHH----HHHHHHHHhhhcCCCcc--cHHHHHHHHHhHHhhc---CCcEEEecccCCC-----Ccccccceeeeccccc
Q psy9579 517 HKLV----KKILKDRVEMGCGKLNV--DWGMAEHLAYASLVIS---GYGVRLSGQDSGR-----GTFSHRHAILYNQDYQ 582 (887)
Q Consensus 517 h~~v----~~~~~~R~~m~~~~~~i--dw~~aE~lA~~sll~~---~~~vrl~GeDv~r-----GtFshRHav~~dq~~~ 582 (887)
.+.+ ...++.-.+ ..+++.+ ..|+..+| ..|+.+ +.+|+..--|+.| |-|. |.++
T Consensus 472 ~~~~~~P~~~~~~~~~~-~~~~~~~sT~~Afgr~L--~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~--------~~gi 540 (891)
T PRK09405 472 FEPLEVPALSAFEALLK-GSGEREISTTMAFVRIL--NILLKDKEIGKRIVPIIPDEARTFGMEGLFR--------QIGI 540 (891)
T ss_pred CCCCCCCChhhHHHhhc-cCCCCcccHHHHHHHHH--HHHHhccccCCcEEEeccccccccCcchhhc--------cccc
Confidence 0000 000100000 0011112 22333332 345554 8899999999997 2231 1111
Q ss_pred cccccCCCcEEecCCCc----cccCCceEEeccccchHHHHH--HHHhhccC--CC--CCceEEeeeccccccchhHHHH
Q psy9579 583 YSEKETDISTYIPLHNV----SKNQAKFHIINSILSEEAILG--FEYGFSTA--SP--NTLTIWEAQFGDFANGAQVIID 652 (887)
Q Consensus 583 ~~~~~~~~~~~~pl~~l----~~~~g~~~V~nspLsE~ailG--~~~G~a~~--~~--~~l~i~E~qFgDF~~~Aq~~~D 652 (887)
|+ ..|..|.|-..- ..+--+.|++|.=|+|+..+| .+.|.|++ |. .++.+.=++|| .|=++|
T Consensus 541 ~~---~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~-----~~Ra~D 612 (891)
T PRK09405 541 YN---PHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFG-----FQRIGD 612 (891)
T ss_pred cc---cccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhh-----hhhHHH
Confidence 10 123445554421 122347899999999999999 88885554 44 44433334443 244588
Q ss_pred HHHhhHHHHhcCccCcEEEecc-c--CCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh---CCCCCc
Q psy9579 653 QFISSSEEKWGRISGLTLMLPH-G--YEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII---RPIRKP 726 (887)
Q Consensus 653 q~i~~~~~kw~~~sglv~~lP~-G--~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~---~~~r~P 726 (887)
|+-+++... ..+..|--=| | +.|-|+.|.+ .|....+...|||.|+.|+.+.+...+++..++ .+..+|
T Consensus 613 qir~a~~~~---~~~v~iggt~gg~tl~~eG~qHqd--g~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~ 687 (891)
T PRK09405 613 LAWAAGDQR---ARGFLLGGTAGRTTLNGEGLQHED--GHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENV 687 (891)
T ss_pred HHHHHHHhc---CCCeEEEEECccccCCCCcccCCc--hhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCe
Confidence 877664221 1233333223 3 3466888876 588888889999999999999999999998866 232344
Q ss_pred EEEEccccccccCCCCCcc-ccCCCCcceeecccc-ccccCCC----CceEEEEEechHHHHHHHHHHHcC---CCcEEE
Q psy9579 727 LIIITPKSLLRKKEASSTL-MDLATGKFNKIINEI-DDIIDPK----KIKRIIACSGKIYYDLFNFRKKKN---KNDVVI 797 (887)
Q Consensus 727 lv~~~pK~Llr~~~~~s~~-~d~~~g~f~~~i~~~-~~~~~~~----~v~r~i~~~G~~~~~l~~~~~~~~---~~~v~v 797 (887)
...++ |+..+...... +++. .-|.+. ..+++++ +-+.+|+++|-+....++|++.+. .+++.|
T Consensus 688 ~yYlr---l~ne~~~~~~~pe~~~-----~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V 759 (891)
T PRK09405 688 FYYIT---VMNENYHQPAMPEGAE-----EGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADV 759 (891)
T ss_pred EEEEE---eCCCCCCCCCCCcccc-----cccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEE
Confidence 44433 11111111000 1111 112221 1122222 123489999998888888776432 379999
Q ss_pred EeccccCCCCHHHHHHHH---------HhcCCCCeEEEEecCCCCCCch-------HHHHHHHHHhhccCCcEEEecCC
Q psy9579 798 IRIEQLYPFPNEDFLKIL---------KKFRYFEKLIWAQDEPKNQGAW-------PQIKENILKYLNSTQKLIYVGRS 860 (887)
Q Consensus 798 i~l~~L~P~~~~~i~~~~---------~k~~~~~~~v~~qEe~~n~G~~-------~~i~~~i~~~~~~~~~~~~~gr~ 860 (887)
+++-++.|||.+.+.... ++++. |...||+ ..|.. .-|...|.+.++ .+++.+|=+
T Consensus 760 isv~SikpLdrd~i~~~~~~~l~~~~~~~~~~----V~t~ee~-~gG~~Vtv~D~~~aVae~la~~~p--~~~~~LGvD 831 (891)
T PRK09405 760 WSVTSFNELARDGQDVERWNMLHPTEEPRVPY----VTQVLKG-AEGPVVAATDYMKLFAEQIRAFVP--GDYVVLGTD 831 (891)
T ss_pred EECCCCCHhhHHHHHHHHHhhcCcccccccch----hhhhhcc-cCCcEEEecchHHHHHHHHHHhCC--CCEEEEecC
Confidence 999999999999999877 56665 4455555 66666 556555655433 466777764
No 44
>KOG0523|consensus
Probab=99.81 E-value=1.1e-17 Score=191.11 Aligned_cols=441 Identities=15% Similarity=0.119 Sum_probs=276.2
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPND 344 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~ 344 (887)
.||+.-...|+|+|++.++.+. .+.-++|++|||.. .+|.+||+|++|+- |++.-+|.|..||+++++++...
T Consensus 118 G~lgQgis~a~GmA~~~k~~~k----~~~rv~~vlGDG~~-~eG~~~EA~s~Ag~--l~ldnLVai~D~n~is~~g~t~~ 190 (632)
T KOG0523|consen 118 GPLGQGISNAVGMAYAGKHLGK----ASNRVYCVLGDGCL-TEGSVWEAMSLAGH--LKLDNLVAIYDNNKISIDGATSL 190 (632)
T ss_pred CCccchHHHHHHHHHHHHhhcc----ccceEEEEEcCchh-ccchHHHHHhhhhh--cccCCEEEEEccccccCCCCCcc
Confidence 5777778899999999999864 35679999999999 99999999999999 99999999999999999998887
Q ss_pred cccCCcccc-cccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhC
Q psy9579 345 LRSTLYCTD-IGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKH 423 (887)
Q Consensus 345 ~rss~~~sd-~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~ 423 (887)
+.. ..+.. +..+||+.++.|||.|+++...+...|. ..-++|+.|-+.|+--.|-...- | .++...
T Consensus 191 ~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~~ig-~--------~~~Hg~ 257 (632)
T KOG0523|consen 191 GFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSPYIG-S--------ESVHGA 257 (632)
T ss_pred ccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCccccc-c--------ccccCC
Confidence 643 34555 7779999999999999888888888877 34478999999998766532211 1 012222
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc--Ccc-ccccccccCCCCCCCCCccCHHHH
Q psy9579 424 PGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYD--KSK-SEWAPFLKNGYIDNCNTSISLEKL 500 (887)
Q Consensus 424 ~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~--~~~-~~w~~~~~~~~~~~~~t~~~~~~l 500 (887)
+++....++-=-..|+ +...-.+..+. +.+|..+..+ ... ..|+. +.
T Consensus 258 pl~~~~~~~~k~~~~~--P~~~~~v~~~~-----------~~~p~~~~~~~~~~~~~i~~~---------~~-------- 307 (632)
T KOG0523|consen 258 PLGEDDVERVKSIKGL--PVLIFVVPEKV-----------KLYPEKPVEDARAISVRIPKI---------WE-------- 307 (632)
T ss_pred cchhhHHHHHHhhcCC--cceeEEecccc-----------ccCCCcccccccccccCcCcc---------cc--------
Confidence 3332211110000011 00000000000 0111100000 000 00000 00
Q ss_pred HHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccc
Q psy9579 501 KFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQD 580 (887)
Q Consensus 501 ~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~ 580 (887)
+-|+.|++-.+ -...| =+..|+| .-|-+.+++|...--|.+-+||+
T Consensus 308 --------~~~p~yk~~Dk---~~Atr-----------k~~~~aL--~~l~~~~~~vI~~~ad~~~st~t---------- 353 (632)
T KOG0523|consen 308 --------KSLPTYKVGDK---AVATR-----------KAFGEAL--AALAEADPRVIGGSADLKNSTLT---------- 353 (632)
T ss_pred --------ccCCccccCCh---hhhHH-----------HHHHHHH--HHHhhcCcCeEEEecccCCCchh----------
Confidence 01112211111 00111 1222332 23444566665555566666662
Q ss_pred cccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHH
Q psy9579 581 YQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEE 660 (887)
Q Consensus 581 ~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~ 660 (887)
.++++--+.|.+|-=++|...+|++.|.|..|+ ++|. =.-|..|..-| +||..-.+-
T Consensus 354 -----------------d~~~~~~p~R~i~~giaEq~mv~ia~G~a~~g~-~~Pf-~~tf~~F~trA---~dqvr~~a~- 410 (632)
T KOG0523|consen 354 -----------------DFFPKRFPERFIECGIAEQNMVGIANGIACRGR-TIPF-CGTFAAFFTRA---FDQVRMGAL- 410 (632)
T ss_pred -----------------hhccccCccceEEEeeehhhhHHhhhchhcCCC-ccch-hHHHHHHHHHh---hhheeehhh-
Confidence 333433467999999999999999999999998 4442 24455555443 788543321
Q ss_pred HhcCccCcEEEecc--cCCC-CCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccc
Q psy9579 661 KWGRISGLTLMLPH--GYEG-QGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLR 737 (887)
Q Consensus 661 kw~~~sglv~~lP~--G~~g-~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr 737 (887)
.+++++...-| +.-| -||.| +-+|-+--+...|||.|.+||.....+++.-.++..+ ..|.|+-.+...+=
T Consensus 411 ---s~~~v~~v~th~~i~~GeDGPth--~~iedlA~frsiPn~~v~~PaD~~et~~av~~Aa~~~-~~p~i~~~~r~~~~ 484 (632)
T KOG0523|consen 411 ---SQANVIYVATHDSIGLGEDGPTH--QPIEDLAMFRSIPNMIVFRPADGNETENAVATAANTK-GTPSIRTLSRQNLP 484 (632)
T ss_pred ---ccCCcEEEEEeccccccCCCccc--ccHHHHHHHHhCCCceEEecCchHHHHHHHHHHHhcC-CCeeEEEecCcccc
Confidence 23567767666 2223 48866 4589887778899999999999999999999999876 35888865433221
Q ss_pred cCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHH
Q psy9579 738 KKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKIL 815 (887)
Q Consensus 738 ~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~ 815 (887)
. ..-++..+...| +.++.+. ..+| +++.+|...+.+++|++.+ ..+++-|||+++..|||..+|..+-
T Consensus 485 ~-~~~~~~~~igkg--~~vl~~~-----~~dV--~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~~~~ 554 (632)
T KOG0523|consen 485 I-YNNTEIEEIGKG--KYVLQEV-----EPDV--ILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLA 554 (632)
T ss_pred c-cCCCchhhhccc--cEEEecC-----CCCE--EEEeccHHHHHHHHHHHHHHhcCceEEEecccceeecchHHhhhhh
Confidence 1 111122222223 2344331 1255 8999999777777776643 2269999999999999999999999
Q ss_pred HhcCCCCeEEEEecCC
Q psy9579 816 KKFRYFEKLIWAQDEP 831 (887)
Q Consensus 816 ~k~~~~~~~v~~qEe~ 831 (887)
+...- .+.|-|++
T Consensus 555 q~~e~---ri~v~ed~ 567 (632)
T KOG0523|consen 555 QSHEY---RISVLEDH 567 (632)
T ss_pred cccce---eEEEccCC
Confidence 88876 35555554
No 45
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.81 E-value=1.9e-17 Score=201.25 Aligned_cols=461 Identities=13% Similarity=0.129 Sum_probs=271.9
Q ss_pred cccccccccchhHHHHHhhccC--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDD--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN 343 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~ 343 (887)
.+|.-.+.|+|.|++.+|.... ....+.=++|+.|||-+ .||.+||++.+|+- ++|..+|+||.+|...+..+.+
T Consensus 204 SlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl-~Eg~~~eA~~~A~~--~~LdNLi~ivD~N~~~lDG~v~ 280 (896)
T PRK13012 204 SMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEM-DEPESIAALSLAAR--EGLDNLVFVINCNLQRLDGPVR 280 (896)
T ss_pred CchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhh-ccHHHHHHHHHHHH--hCCCcEEEEEECCCccccCccc
Confidence 4555577788999998865321 12335679999999999 99999999999999 9999999999999999999887
Q ss_pred Cccc-CCcccccccccCCcEEEE--------------------------c------------------------------
Q psy9579 344 DLRS-TLYCTDIGKIIEAPVFHV--------------------------N------------------------------ 366 (887)
Q Consensus 344 ~~rs-s~~~sd~Ak~~giP~~~V--------------------------d------------------------------ 366 (887)
..-. ...+.++.+++|.-++.| |
T Consensus 281 ~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~ 360 (896)
T PRK13012 281 GNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVA 360 (896)
T ss_pred cccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhh
Confidence 6433 357888999999999999 9
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCC---CCCCCCCCChHhhHHHhhCCCHHHHH
Q psy9579 367 -------------GDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN---EQDTPSLTQPLMYKKIFKHPGIRELY 430 (887)
Q Consensus 367 -------------G~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHn---e~DdP~~tqp~~Yr~i~~~~dpi~~y 430 (887)
|+|+.+++.|.+.|.+. -++|++|-+.|-.-+|=+ |..+- .-|. + .-..+-+..+
T Consensus 361 ~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~PtvIla~TvkG~G~~~~~e~~~~-~H~~---~--~l~~e~~~~~ 431 (896)
T PRK13012 361 HLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGYGMGEAGEGRMT-THQQ---K--KLDVEALKAF 431 (896)
T ss_pred cccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCCcccCCCcc-cccC---C--CCCHHHHHHH
Confidence 99999999999888753 257999999998888854 22210 0000 0 0012344445
Q ss_pred HHHHHHcCC-CCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHH
Q psy9579 431 SNKLKIQKI-LTKNESENM--------IKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLK 501 (887)
Q Consensus 431 ~~~Li~~Gi-~t~~e~~~i--------~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~ 501 (887)
++++ |+ +++++++++ ..+++. +.+..+....+.|.. . ..+..+
T Consensus 432 r~~~---g~p~~d~~~~~~pf~~p~~~~~~~~~-l~~r~~~l~g~~P~r-~----~~~~~l------------------- 483 (896)
T PRK13012 432 RDRF---RLPLSDEQLEQLPFYKPAEDSPEMRY-LHARRAALGGYLPRR-R----TAAPPL------------------- 483 (896)
T ss_pred HHHc---CCCCChhhhccCCCcCCccccHHHHH-HHHHHHHhcCcCCcc-c----cccccc-------------------
Confidence 5554 22 233333210 001100 111111111111110 0 000000
Q ss_pred HHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcc--cHHHHHHHHHhHHhhc---CCcEEEecccCCC-----Ccccc
Q psy9579 502 FLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNV--DWGMAEHLAYASLVIS---GYGVRLSGQDSGR-----GTFSH 571 (887)
Q Consensus 502 ~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~i--dw~~aE~lA~~sll~~---~~~vrl~GeDv~r-----GtFsh 571 (887)
.+|.. +...++++. ..+..+ ..|+..+ ...|+.. +++|+..-=|+.| |-|.+
T Consensus 484 -------~~p~~----~~~~~~~~~-----~~~~~isTr~Afgr~--L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~ 545 (896)
T PRK13012 484 -------PVPPL----SAFAQFALG-----AGGKEMSTTMAFVRM--LGNLLKDKALGPRIVPIVADEARTFGMANLFRQ 545 (896)
T ss_pred -------CCCch----hhHHHhhcc-----cCCCcchHHHHHHHH--HHHHHhccccCCCEEEeccccccccCccccccc
Confidence 01100 000011100 001111 1122222 2355555 8889877789885 22311
Q ss_pred cceeeeccccccccccCCCcEEec-----CCCccccCCceEEeccccchHHHHH--HHHhh--ccCCCCCceEEeeeccc
Q psy9579 572 RHAILYNQDYQYSEKETDISTYIP-----LHNVSKNQAKFHIINSILSEEAILG--FEYGF--STASPNTLTIWEAQFGD 642 (887)
Q Consensus 572 RHav~~dq~~~~~~~~~~~~~~~p-----l~~l~~~~g~~~V~nspLsE~ailG--~~~G~--a~~~~~~l~i~E~qFgD 642 (887)
.- ++.. .+..|.| +....+++ +.|.+|.=|+|++.+| .+.|. |+.|...+|+. +=|.=
T Consensus 546 ~~--i~~~---------~gq~y~~~d~~~~~~yke~~-pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~-~tfs~ 612 (896)
T PRK13012 546 VG--IYSP---------LGQLYEPEDAGSLLYYREAK-DGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFY-IYYSM 612 (896)
T ss_pred cc--cccc---------ccccccccchhHHhhhhhCC-CCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEE-EehHH
Confidence 00 0000 2344555 22222333 6799999999999977 55555 55554223432 33332
Q ss_pred cccchhHHHHHHHhhHHHHhcCccCcEEEecccC---CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHH
Q psy9579 643 FANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY---EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQI 719 (887)
Q Consensus 643 F~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~---~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~ 719 (887)
.++|=+.||+-+++..+ ..++.+...||. .+-||.|.+ +|....+...||+.|+.|+.+.+...+++..+
T Consensus 613 --F~~~R~~Dqir~a~~~~---~~~vlig~T~gg~tlg~dG~THQ~--~eslal~RaIPN~~V~~PADa~E~a~iv~~al 685 (896)
T PRK13012 613 --FGFQRVGDLIWAAADQR---ARGFLLGATAGRTTLGGEGLQHQD--GHSHLLASTIPNCRAYDPAFAYELAVIVDDGM 685 (896)
T ss_pred --HHHHHHHHHHHHHHhcc---cCCeEEEEeCcccccCCCCCCCcc--hHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 33466778876554221 245777778864 567899986 79999999999999999999999999999877
Q ss_pred hC---C-CCCcEEE-EccccccccCCCCCc-cccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHc--C
Q psy9579 720 IR---P-IRKPLII-ITPKSLLRKKEASST-LMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKK--N 791 (887)
Q Consensus 720 ~~---~-~r~Plv~-~~pK~Llr~~~~~s~-~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~ 791 (887)
++ + ...|..+ +..+. |.++.-... -.++..|.+ ++.+. +++.+| +|+++|.+....++|++.+ .
T Consensus 686 ~~m~~~~~~~p~YIrL~r~~-~~~p~~~~~~~~~i~kG~y--~l~~~---~~g~dv--~LiasGs~v~eAl~AAe~L~~e 757 (896)
T PRK13012 686 RRMLEEQEDVFYYLTVMNEN-YAQPALPEGAEEGILKGMY--RLAAA---AEAPRV--QLLGSGAILREVLAAARLLADD 757 (896)
T ss_pred HHHHhccCCCeEEEEecCCC-CCCCCCCccchhccccCcE--EEecc---CCCCCE--EEEEecHHHHHHHHHHHHHHhh
Confidence 43 1 1256443 22222 111110000 022334443 22221 134456 8999999888887776643 2
Q ss_pred -CCcEEEEeccccCCCCHHHHH
Q psy9579 792 -KNDVVIIRIEQLYPFPNEDFL 812 (887)
Q Consensus 792 -~~~v~vi~l~~L~P~~~~~i~ 812 (887)
.+++.||++-++.||+.+.|.
T Consensus 758 ~GI~a~V~sv~S~kpLd~d~i~ 779 (896)
T PRK13012 758 WGVDADVWSVTSFTELRRDGLA 779 (896)
T ss_pred hCCCeEEEECCCCCHhHHHHHH
Confidence 379999999999999999883
No 46
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.78 E-value=1.2e-18 Score=174.02 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=122.5
Q ss_pred HHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccC
Q psy9579 549 SLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTA 628 (887)
Q Consensus 549 sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~ 628 (887)
.++++++++.+.|+|++.++. ++++.++| +.|++|+||+|.+++|.+.|+|+.
T Consensus 9 ~~~~~~~~~v~~~~Dl~~~~~--------------------------~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~ 61 (156)
T cd07033 9 ELAKKDPRIVALSADLGGSTG--------------------------LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALH 61 (156)
T ss_pred HHHhhCCCEEEEECCCCCCCC--------------------------cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHC
Confidence 357899999999999986322 34677777 789999999999999999999999
Q ss_pred CCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEeccc-CC--CCCccccCchHHHHHhhhcCCCcEEEcC
Q psy9579 629 SPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHG-YE--GQGPEHSSARLERFLQLCANNNIQIVQP 705 (887)
Q Consensus 629 ~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G-~~--g~GpeHSs~r~Er~lq~~~~~nl~V~~p 705 (887)
|.+ ||+|.| .||..-| +||+.+. .++++ .+++++.+|| +. +.||.|++...+.+| ...||++|+.|
T Consensus 62 G~~--pi~~~~-~~f~~ra---~dqi~~~-~a~~~--~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~--~~iPg~~v~~P 130 (156)
T cd07033 62 GLK--PFVSTF-SFFLQRA---YDQIRHD-VALQN--LPVKFVGTHAGISVGEDGPTHQGIEDIALL--RAIPNMTVLRP 130 (156)
T ss_pred CCe--EEEEEC-HHHHHHH---HHHHHHH-HhccC--CCeEEEEECCcEecCCCCcccchHHHHHHh--cCCCCCEEEec
Confidence 964 899999 9999775 9998865 36665 8999999986 33 579999887677776 46689999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCcEEEEccc
Q psy9579 706 TSASQIFHLLRYQIIRPIRKPLIIITPK 733 (887)
Q Consensus 706 stpa~~~hlLr~q~~~~~r~Plv~~~pK 733 (887)
|+|.|++.+|+.++..+ +|++|..||
T Consensus 131 s~~~~~~~ll~~a~~~~--~P~~irl~~ 156 (156)
T cd07033 131 ADANETAAALEAALEYD--GPVYIRLPR 156 (156)
T ss_pred CCHHHHHHHHHHHHhCC--CCEEEEeeC
Confidence 99999999999999876 799998764
No 47
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.75 E-value=8.9e-18 Score=168.99 Aligned_cols=159 Identities=27% Similarity=0.316 Sum_probs=123.5
Q ss_pred HHHHHHhHHhhcC-CcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHH
Q psy9579 542 AEHLAYASLVISG-YGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILG 620 (887)
Q Consensus 542 aE~lA~~sll~~~-~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG 620 (887)
+-..++..++.++ .+|+++|+|++.+++.+++.++.+++ ++ ++.|++|+||+|.+++|
T Consensus 5 ~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~-----------------~~----~~~R~~~~gIaE~~~vg 63 (168)
T smart00861 5 AFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTK-----------------GL----GPGRVIDTGIAEQAMVG 63 (168)
T ss_pred HHHHHHHHHHhhCCCcEEEEehhhCcCcCCCcCCccCCCC-----------------CC----CCccEEEcCcCHHHHHH
Confidence 3344556677774 49999999999988766555544443 44 67899999999999999
Q ss_pred HHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cCCCC-CccccCchHHHHHhhhcCC
Q psy9579 621 FEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GYEGQ-GPEHSSARLERFLQLCANN 698 (887)
Q Consensus 621 ~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~~g~-GpeHSs~r~Er~lq~~~~~ 698 (887)
++.|+|+.|. +||++.++.+|. -| .||+...+..+ ...+|++.+. ++.|+ ||.|++.+.+.+|. ..|
T Consensus 64 ~a~GlA~~G~--~pi~~~~~~f~~-~a---~~~~~~~~~~~---~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~--~iP 132 (168)
T smart00861 64 FAAGLALAGL--RPVVAIFFTFFD-RA---KDQIRSDGAMG---RVPVVVRHDSGGGVGEDGPTHHSQEDEALLR--AIP 132 (168)
T ss_pred HHHHHHHcCC--CcEEEeeHHHHH-HH---HHHHHHhCccc---CCCEEEEecCccccCCCCccccchhHHHHHh--cCC
Confidence 9999999997 578888877665 44 88887664433 5678888864 55666 99999998888874 667
Q ss_pred CcEEEcCCCHhHHHHHHHHHHhCCCCCc-EEEEccc
Q psy9579 699 NIQIVQPTSASQIFHLLRYQIIRPIRKP-LIIITPK 733 (887)
Q Consensus 699 nl~V~~pstpa~~~hlLr~q~~~~~r~P-lv~~~pK 733 (887)
|++|+.|++|.|++++|+.++.++ .+| +|++++|
T Consensus 133 ~~~v~~P~~~~e~~~~l~~a~~~~-~~p~~i~~~~~ 167 (168)
T smart00861 133 GLKVVAPSDPAEAKGLLRAAIRRD-DGPPVIRLERK 167 (168)
T ss_pred CcEEEecCCHHHHHHHHHHHHhCC-CCCEEEEecCC
Confidence 999999999999999999999653 257 7777766
No 48
>PRK05261 putative phosphoketolase; Provisional
Probab=99.74 E-value=3.1e-15 Score=179.67 Aligned_cols=437 Identities=14% Similarity=0.188 Sum_probs=242.2
Q ss_pred CCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHH---HHHHHHhccCCCCCCCEEEEEEeCCceecc
Q psy9579 264 PSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVV---METLNFSKIDSYNTGGTIHIIINNQIGFTT 340 (887)
Q Consensus 264 pShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v---~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST 340 (887)
-..||...++|+|+|++. . +.+++|++|||++ .+|.+ |++.+++.- ++++-++-|+.+|+|.|++
T Consensus 141 ~G~LG~gls~A~G~Al~~----~-----d~iv~~~vGDGE~-EeG~lAa~W~~~~~~~~--~~~g~vLPIld~Ng~~Is~ 208 (785)
T PRK05261 141 GGELGYSLSHAYGAAFDN----P-----DLIVACVVGDGEA-ETGPLATSWHSNKFLNP--ATDGAVLPILHLNGYKIAN 208 (785)
T ss_pred CCchhhHHHHHHHHHHcC----C-----CCEEEEEECcCch-hhhhhHHHhhhhhhccc--ccCCCEEEEEEecCCcCCC
Confidence 356788888899988532 2 6699999999998 99984 888888877 8898899999999999999
Q ss_pred CCCCcccC-CcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHc-----------c---CCcE--EEEEEeeecCC-
Q psy9579 341 SPNDLRST-LYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMK-----------F---KKDC--IINIICFRKLG- 402 (887)
Q Consensus 341 ~~~~~rss-~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~-----------~---~~Pv--lIe~vtYR~~G- 402 (887)
+...++.+ ..+.++.++||++++.|||+|+++|+.+++.|++.+-+ + .+|. +|.+.|---+|
T Consensus 209 pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~ 288 (785)
T PRK05261 209 PTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTG 288 (785)
T ss_pred CccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCC
Confidence 99876544 68999999999999999999999999998877775543 4 5898 99999876444
Q ss_pred CCCCCCCCCCChHhhHHHhhCCCH----------HHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy9579 403 HNEQDTPSLTQPLMYKKIFKHPGI----------RELYSNKLKIQK---ILTKNESENMIKEFNDMINSGKSIVNSIPSN 469 (887)
Q Consensus 403 Hne~DdP~~tqp~~Yr~i~~~~dp----------i~~y~~~Li~~G---i~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~ 469 (887)
=++.|-- |. .-+.+.|.-| ++.+.++|..-+ ++++. .++..++++.+.+..+...+.|..
T Consensus 289 p~~~dg~----~~-eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~--g~l~~~~~~l~p~g~~r~~~~P~a 361 (785)
T PRK05261 289 PKEVDGK----PI-EGSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDED--GRLKPELAALAPKGDRRMGANPHA 361 (785)
T ss_pred CcccCCc----cc-CCCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCC--CchhHHHHHhccCchhhhcCCchh
Confidence 2222210 10 0001122222 223333332111 11110 112222222111111111111100
Q ss_pred CCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhH
Q psy9579 470 FIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYAS 549 (887)
Q Consensus 470 ~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~s 549 (887)
. -...+.....+.+.. -.++ ..+.+.... ..-| .+.. .+..
T Consensus 362 n----g~~~~~~l~lp~~~~---~~~~------------~~~~g~~~~------~atr------------~~g~--~l~~ 402 (785)
T PRK05261 362 N----GGLLLRDLRLPDFRD---YAVP------------VGKPGAVMA------EATR------------VLGK--YLRD 402 (785)
T ss_pred c----CCcCccccCCCchHh---hccc------------ccCCCcccc------ccHH------------HHHH--HHHH
Confidence 0 000011000000000 0000 000000000 0000 0111 1234
Q ss_pred HhhcCCc-EEEecccCCC-----CcccccceeeeccccccccccCCCcEEecCC-CccccCCceEEeccccchHHHHHHH
Q psy9579 550 LVISGYG-VRLSGQDSGR-----GTFSHRHAILYNQDYQYSEKETDISTYIPLH-NVSKNQAKFHIINSILSEEAILGFE 622 (887)
Q Consensus 550 ll~~~~~-vrl~GeDv~r-----GtFshRHav~~dq~~~~~~~~~~~~~~~pl~-~l~~~~g~~~V~nspLsE~ailG~~ 622 (887)
++..+++ .|++|-|--. ++|.+ .+ +.|.. ...|-. .+.. ..||+. .|||.++-|+.
T Consensus 403 v~~~np~~frvf~pDe~~SNrl~~~f~~-------t~-----r~~~~-~~~~~d~~~~~---~Grvie-~LsEh~~~g~~ 465 (785)
T PRK05261 403 VIKLNPDNFRIFGPDETASNRLQAVFEV-------TD-----RQWMA-EILPYDEHLAP---DGRVME-VLSEHLCEGWL 465 (785)
T ss_pred HHHhCCCceEEEcCCcchhhccHhHHhh-------hc-----ccccc-ccCCcccccCC---CCCeee-eecHHHHHHHH
Confidence 5566677 8999999653 44411 00 01111 011111 2222 248999 99999999999
Q ss_pred HhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcC----------ccCcEEEecc-cCC--CCCccccCch-H
Q psy9579 623 YGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGR----------ISGLTLMLPH-GYE--GQGPEHSSAR-L 688 (887)
Q Consensus 623 ~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~----------~sglv~~lP~-G~~--g~GpeHSs~r-~ 688 (887)
-||++.|..++ | +-|--|+ .|+|-.+++ .+||.+ .+.|.+++=| .++ --|+.|---. +
T Consensus 466 ~Gy~LtG~~~~--~-~sYeaF~----~ivd~m~~q-~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~i 537 (785)
T PRK05261 466 EGYLLTGRHGF--F-SSYEAFI----HIVDSMFNQ-HAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFI 537 (785)
T ss_pred HHHHhcCCCcc--e-ecHHHHH----HHHHHHHHH-HHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHH
Confidence 99999887653 2 2333333 245555544 566666 5566666665 443 3477774311 6
Q ss_pred HHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCC-ccccCCCCcceeeccccccccCCC
Q psy9579 689 ERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASS-TLMDLATGKFNKIINEIDDIIDPK 767 (887)
Q Consensus 689 Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s-~~~d~~~g~f~~~i~~~~~~~~~~ 767 (887)
|-++.+-+ +|++|.-|.++-......+.+++.. .+|.+|+.+|.=+-.-...+ ..+....|.| ++..+..- .+.
T Consensus 538 e~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~-~~p~~IvlsRQ~lp~~~~~~~a~~~~~kGay--i~~~a~~~-~~~ 612 (785)
T PRK05261 538 DHVANKKP-DVIRVYLPPDANTLLAVADHCLRSR-NYINVIVAGKQPRPQWLSMDEARKHCTKGLG--IWDWASND-DGE 612 (785)
T ss_pred HHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhC-CCCEEEEEeCCCCcccCChHHHHHhccCceE--EEEeccCC-CCC
Confidence 76666655 9999999999888888888888653 48999888875221100000 0123345654 33322100 121
Q ss_pred CceEEEEEechH-HHHHHHHHH
Q psy9579 768 KIKRIIACSGKI-YYDLFNFRK 788 (887)
Q Consensus 768 ~v~r~i~~~G~~-~~~l~~~~~ 788 (887)
+.+.||+|+|.. ..+.++|++
T Consensus 613 ~pDvvL~atGsev~leAlaAa~ 634 (785)
T PRK05261 613 EPDVVLACAGDVPTLETLAAAD 634 (785)
T ss_pred CCCEEEEEeCcHhhHHHHHHHH
Confidence 234499999994 442555554
No 49
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.67 E-value=1.4e-16 Score=164.90 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=106.6
Q ss_pred cCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS 341 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~ 341 (887)
....+++...|+|+|+|+|.++++. +..++|++|||++ .||.+||+|++|+. |.+| +|+||.||+|+++++
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~-----~~~vv~~~GDG~~-~eG~~~Eal~~A~~--~~~~-li~vvdnN~~~~~~~ 142 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGK-----KRKVIAVIGDGAL-TGGMAFEALNNAGY--LKSN-MIVILNDNEMSISPN 142 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCC-----CCeEEEEEccccc-ccChHHHHHHHHHH--hCCC-EEEEEECCCcccCCC
Confidence 3557889999999999999998875 6789999999999 89999999999999 8999 999999999999987
Q ss_pred CCCcccCCcccccccccCCcEEE-EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCC
Q psy9579 342 PNDLRSTLYCTDIGKIIEAPVFH-VNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLG 402 (887)
Q Consensus 342 ~~~~rss~~~sd~Ak~~giP~~~-VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~G 402 (887)
.. ...++++++|..+.. |||+|++++.++++.|. +.++|++|++.|+.-.|
T Consensus 143 ~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 143 VG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccC
Confidence 65 256778888888885 99999999998887764 35899999999987554
No 50
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.5e-14 Score=154.14 Aligned_cols=267 Identities=16% Similarity=0.199 Sum_probs=199.1
Q ss_pred HHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHH
Q psy9579 540 GMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAIL 619 (887)
Q Consensus 540 ~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ail 619 (887)
+++|.| ..|-..+.+|++.=-|+..- |. +..+.++ .|.|++|-=|+|+..+
T Consensus 12 ~~g~~L--~~l~~~~~diVvl~ADl~~S---------------------t~-----~~~f~~~-fPdR~~NvGIaEQ~mv 62 (312)
T COG3958 12 VYGETL--AELGRKNSDIVVLDADLSSS---------------------TK-----TGYFAKE-FPDRFFNVGIAEQDMV 62 (312)
T ss_pred HHHHHH--HHHHhcCCCEEEEecccccc---------------------cc-----hhHHHHh-CchhheecchHHHHHH
Confidence 344443 24567789999888888752 11 1133344 4889999999999999
Q ss_pred HHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cC--CCCCccccCchHHHHHhhhc
Q psy9579 620 GFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GY--EGQGPEHSSARLERFLQLCA 696 (887)
Q Consensus 620 G~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~--~g~GpeHSs~r~Er~lq~~~ 696 (887)
|++.|.|+.|.++.+ --|+=|+.+= .+||+-++- +. ...++-+..-| |+ ..-||.|.+ +|-+--+-.
T Consensus 63 g~AAGLA~~Gk~Pfv---~tfa~F~s~R--a~EQir~~i-ay--~~lnVKiv~t~~G~t~g~dG~sHq~--~EDiaimR~ 132 (312)
T COG3958 63 GTAAGLALAGKKPFV---STFAAFLSRR--AWEQIRNSI-AY--NNLNVKIVATHAGVTYGEDGSSHQA--LEDIAIMRG 132 (312)
T ss_pred HHHHHHHhcCCCcee---echHHHHHHH--HHHHHHHHh-hh--ccCCeEEEEecCCcccCCCCccchh--HHHHHHHhc
Confidence 999999999998644 6788888721 389976552 21 23455666556 43 346888875 798877788
Q ss_pred CCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEe
Q psy9579 697 NNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACS 776 (887)
Q Consensus 697 ~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~ 776 (887)
.|||.|+.|+.+-+...+++..+. ++.|+-+ .|.|.+.++. + ..+.|.--|+++.++++|+|+ +|+++
T Consensus 133 lpn~~V~~P~D~v~~~~i~~~~~~--~~GP~Y~----Rl~R~~~p~~-~---~~~~~~F~iGka~vLrdG~D~--tiiA~ 200 (312)
T COG3958 133 LPNMTVIAPADAVETRAILDQIAD--YKGPVYM----RLGRGKVPVV-V---DEGGYTFEIGKANVLRDGSDL--TIIAT 200 (312)
T ss_pred CCCceEEccCcHHHHHHHHHHHHh--cCCCEEE----EecCCCCCce-e---cCCCceEeccceeEeecCCce--EEEec
Confidence 899999999999999988886654 4589877 5666554431 1 122233356777778899998 89999
Q ss_pred chHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcE
Q psy9579 777 GKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKL 854 (887)
Q Consensus 777 G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~ 854 (887)
|-|....++|++.+ ..++++||++-++.|+|.++|.+..++|++ +|.|+|-.-++|.++-|...+.+..+ .++
T Consensus 201 G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~---IvT~EeHsi~GGlGsaVAEvlse~~p--~~~ 275 (312)
T COG3958 201 GVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGR---IVTAEEHSIIGGLGSAVAEVLSENGP--TPM 275 (312)
T ss_pred CcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCc---EEEEecceeecchhHHHHHHHHhcCC--cce
Confidence 99777777666542 237999999999999999999999999976 79999999999999999888887654 678
Q ss_pred EEecCCCC
Q psy9579 855 IYVGRSCS 862 (887)
Q Consensus 855 ~~~gr~~~ 862 (887)
+.+|=+..
T Consensus 276 ~riGvp~~ 283 (312)
T COG3958 276 RRIGVPDT 283 (312)
T ss_pred EEecCCch
Confidence 88887643
No 51
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2e-12 Score=150.05 Aligned_cols=471 Identities=16% Similarity=0.158 Sum_probs=264.3
Q ss_pred CcccccccccchhHHHHHhhccC--CCC---CceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceec
Q psy9579 265 SHLEIINPVVEGSAKARMERRDD--KFG---TQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFT 339 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~--~~~---~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~S 339 (887)
.+||--.+-|+|.|+|.+..... +.+ -+.-+.|+.|||-. -+|+.||+..+|.. ++|+-.|.+.-+|.|.|.
T Consensus 116 GPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGcl-mEGvs~EA~slAG~--l~L~kLIvlyD~N~IsiD 192 (663)
T COG0021 116 GPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCL-MEGVSHEAASLAGH--LKLGKLIVLYDSNDISID 192 (663)
T ss_pred CccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchH-hcccHHHHHHHHhh--cCCCcEEEEEeCCCceec
Confidence 45676677899999999876542 111 13469999999999 99999999999999 999999999999999999
Q ss_pred cCCCCcccCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCC-CCCCCC-CChHh
Q psy9579 340 TSPNDLRSTLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNE-QDTPSL-TQPLM 416 (887)
Q Consensus 340 T~~~~~rss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne-~DdP~~-tqp~~ 416 (887)
.+.+... +.+...+.++||..++ .+||+|++++..|.+.|.. ...+|++|++.|-=-+|=.. .+.... --|.-
T Consensus 193 G~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg 268 (663)
T COG0021 193 GDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLG 268 (663)
T ss_pred cCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCCcCCCccccCCCCC
Confidence 9988765 5578889999999999 7899999999888887764 36799999999965554333 332211 01221
Q ss_pred hHHH--------hh------CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHHhhcCCCCCCccCccccc
Q psy9579 417 YKKI--------FK------HPGIRELYSNKLKIQKILTKNESENMIKEFNDM---INSGKSIVNSIPSNFIYDKSKSEW 479 (887)
Q Consensus 417 Yr~i--------~~------~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~---l~~a~~~a~~~~~~~~~~~~~~~w 479 (887)
-..+ |. ..++...|+ ...++|.-.+++++++-+.+++. +.+.++...+.. +...|
T Consensus 269 ~~ev~~~k~~lgw~~~~F~vp~ev~~~~~-~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~-------~p~~~ 340 (663)
T COG0021 269 EEEVAAAKKALGWEPEPFEVPEEVYAAFR-AVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGE-------LPANW 340 (663)
T ss_pred HHHHHHHHHHhCCCCCceecCHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhccc-------CchhH
Confidence 1111 11 001111122 22223322222332222222221 111222111111 11223
Q ss_pred cccccCCCCCC---CCC-ccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCC
Q psy9579 480 APFLKNGYIDN---CNT-SISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGY 555 (887)
Q Consensus 480 ~~~~~~~~~~~---~~t-~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~ 555 (887)
...+ +.+... ..| ..+.+.|+.|+.. +|+-+ |-
T Consensus 341 ~~~~-~~~~~~~~~~ATR~as~~~L~~l~~~---~p~l~---------------------------------------GG 377 (663)
T COG0021 341 AAFL-PKFEANGKSIATRKASGKALNALAKK---LPELI---------------------------------------GG 377 (663)
T ss_pred HHhh-hhhcccccccchHHHHHHHHHHHHhh---Ccccc---------------------------------------cc
Confidence 2211 111100 001 0111112222221 11100 00
Q ss_pred cEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCC-CCce
Q psy9579 556 GVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASP-NTLT 634 (887)
Q Consensus 556 ~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~-~~l~ 634 (887)
+ -|+..-++ -++.+ ...+.++--..|-+.==+-|.+.-+..-|+|+.|. ++.-
T Consensus 378 S-----ADLa~Sn~----------------T~~~~-----~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyg 431 (663)
T COG0021 378 S-----ADLAPSNL----------------TKISG-----SGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYG 431 (663)
T ss_pred C-----cccccCcc----------------ccccc-----cCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeec
Confidence 0 12221100 00000 00111110112444445789999999999999886 3211
Q ss_pred EEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc---cCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHH
Q psy9579 635 IWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH---GYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQI 711 (887)
Q Consensus 635 i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~---G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~ 711 (887)
=-=..|-||+.+| +--++-. .-+++..+-| |-+.-||.|-- +|-.-.|-+.||+.|.-|..+-+.
T Consensus 432 gTFlvFsdY~r~A------iRlaALm----~l~~~~V~THDSIgvGEDGPTHqP--iEqLa~LRaiPN~~V~RPaD~~Et 499 (663)
T COG0021 432 GTFLVFSDYARPA------VRLAALM----GLPVIYVFTHDSIGVGEDGPTHQP--VEQLASLRAIPNLSVIRPADANET 499 (663)
T ss_pred ceehhhHhhhhHH------HHHHHhc----CCCeEEEEecCceecCCCCCCCCc--HHHHHHhhccCCceeEecCChHHH
Confidence 0113444444443 1111111 2355666666 44556999964 898888889999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEE-ccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEech-HHHHHHHHHHH
Q psy9579 712 FHLLRYQIIRPIRKPLIII-TPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGK-IYYDLFNFRKK 789 (887)
Q Consensus 712 ~hlLr~q~~~~~r~Plv~~-~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~-~~~~l~~~~~~ 789 (887)
....+.++.+. ..|.++. +-..|=-. ..+..+.+..|.| ++.+.. +.+.+.||++||. |--++.++.+-
T Consensus 500 ~~aw~~Al~~~-~gPt~LiltRQnlp~l--~~t~~~~~~kGaY--vl~~~~----~~~pd~iliAtGSEV~lAv~Aa~~L 570 (663)
T COG0021 500 AAAWKYALERK-DGPTALILTRQNLPVL--ERTDLEGVAKGAY--VLKDSG----GEDPDVILIATGSEVELAVEAAKEL 570 (663)
T ss_pred HHHHHHHHhcC-CCCeEEEEecCCCCcc--CCCccccccCccE--EEeecC----CCCCCEEEEecccHHHHHHHHHHHH
Confidence 99999999864 3676654 43332111 1122333344544 343331 1134558999999 65555554432
Q ss_pred --cCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHH
Q psy9579 790 --KNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIK 841 (887)
Q Consensus 790 --~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~ 841 (887)
++ +.|-||.+-....|+.+.-.--..-.|..-.-.+.=|.-..+|.|.|+-
T Consensus 571 ~~~~-~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g 623 (663)
T COG0021 571 EAEG-IKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVG 623 (663)
T ss_pred HhcC-CceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcC
Confidence 34 7899999888888877654422222233211246777888888887774
No 52
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.59 E-value=2.8e-14 Score=153.37 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=118.8
Q ss_pred CCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC
Q psy9579 264 PSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN 343 (887)
Q Consensus 264 pShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~ 343 (887)
..++|...|.|+|+|+|.++.+. +..++|+.|||++ .+|.++|+|++|.. |++|-+++|+.||.|+++++..
T Consensus 104 ~GslG~gl~~avG~Ala~~~~~~-----~~~v~~i~GDG~~-~~G~~~eal~~a~~--~~l~~li~vvdnN~~~~~~~~~ 175 (255)
T cd02012 104 TGSLGQGLSVAVGMALAEKLLGF-----DYRVYVLLGDGEL-QEGSVWEAASFAGH--YKLDNLIAIVDSNRIQIDGPTD 175 (255)
T ss_pred CcchhhHHHHHHHHHHHHHHhCC-----CCEEEEEECcccc-cccHHHHHHHHHHH--cCCCcEEEEEECCCccccCcHh
Confidence 36788899999999999998765 7789999999999 99999999999999 9998899999999999998775
Q ss_pred CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCC
Q psy9579 344 DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQD 407 (887)
Q Consensus 344 ~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~D 407 (887)
.........++++++|++++.|||+|++++..+.+.|.+.. ++|++|++.|.+-.||+...
T Consensus 176 ~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~---~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 176 DILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSK---GKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred hccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcC---CCCEEEEEEeecccccCccC
Confidence 55555678899999999999999999999999998887532 78999999999999998443
No 53
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.58 E-value=7.9e-15 Score=154.06 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=132.1
Q ss_pred CCchhHHHHHHHHHHHhhcC-CCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCC
Q psy9579 174 EGSESFILSLNEIIQHSGKR-GIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTP 252 (887)
Q Consensus 174 eG~Ea~~vgl~~~i~~a~al-~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~ 252 (887)
.||++..+.+ ++.+ |..|.+++ .||... ..++.+|.+|. . ..| ++.|.... ..
T Consensus 2 ~GHg~~~l~a------~l~l~G~~~~~~p-~~~~~~--------~gl~~lf~qfs--~----~gg-~psH~~~~----tp 55 (227)
T cd02011 2 PGHGGPAVLA------NLYLEGSYSEFYP-EISQDE--------EGMRKLFKQFS--F----PGG-IPSHAAPE----TP 55 (227)
T ss_pred CChHHHHHHH------HHHhcCCCccccc-cccccH--------HHHHHHHHhcC--C----CCC-CCCCCccc----CC
Confidence 4888877655 4455 44688998 888654 11366788872 1 123 67776422 12
Q ss_pred CceeEEEeecCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHH---HHHHHHhccCCCCCCCEEE
Q psy9579 253 GGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVV---METLNFSKIDSYNTGGTIH 329 (887)
Q Consensus 253 gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v---~EaLN~A~l~~~~lpGvIf 329 (887)
|.+ ...+.|+...++|+|+|+ ++ .+.+++|++|||++ .+|.+ ||+.+++.- ++++.++-
T Consensus 56 -Gi~-----~~~G~LG~gLs~A~G~a~----d~-----~d~iv~~vvGDGE~-eeG~lA~~W~a~~~~~~--~~~~~vLp 117 (227)
T cd02011 56 -GSI-----HEGGELGYSLSHAYGAVF----DN-----PDLIVACVVGDGEA-ETGPLATSWHSNKFLNP--ATDGAVLP 117 (227)
T ss_pred -Cee-----ecccchhhHHHHHHHhhh----cC-----CCcEEEEEECcCHH-HHHhHHHHHHhhhhhcc--cccCCeEE
Confidence 222 234678888999999974 22 36799999999999 99997 998888887 99999999
Q ss_pred EEEeCCceeccCCCCcc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHc
Q psy9579 330 IIINNQIGFTTSPNDLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMK 386 (887)
Q Consensus 330 iv~NNq~g~ST~~~~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~ 386 (887)
|+.||+|+|++++..++ +...+.+++++||++.+.|||+|+++|+++++.|+++++.
T Consensus 118 Ild~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~ 175 (227)
T cd02011 118 ILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIE 175 (227)
T ss_pred EEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998764 4578999999999999999999999999999999999885
No 54
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.49 E-value=1.7e-13 Score=149.61 Aligned_cols=236 Identities=18% Similarity=0.110 Sum_probs=153.8
Q ss_pred CccchHHHHHHHhCCCHH-HHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecC---CCcccccccccchhH
Q psy9579 203 AHRGRLNVLVNILGKKPK-ELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFN---PSHLEIINPVVEGSA 278 (887)
Q Consensus 203 ~HRgr~~~L~n~~G~~~~-~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~n---pShle~v~Pva~G~A 278 (887)
-||||..+. .+|.++. .++.+.+|+.+- ..+| .||+ .+.++.++++-..- -+..|...|+|.|.+
T Consensus 14 ~~~gh~~C~--GCG~~~~~~~l~~~lg~~~v--~~~~----iGC~---~~~~g~~p~~~~~~~~i~~~~G~~~~~A~G~a 82 (300)
T PRK11864 14 FYPGNAACP--GCGAPLGLRYLLKALGEKTV--LVIP----ASCS---TVIQGDTPKSPLTVPVLHTAFAATAAVASGIE 82 (300)
T ss_pred ecCCCccCC--CCCCHHHHHHHHHHhCCCeE--EEeC----CCcc---ceecCCCCcccccccceeehhhChHHHHHHHH
Confidence 478888888 8888888 889999886541 1111 1233 12222222211111 134588899999999
Q ss_pred HHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccC----------
Q psy9579 279 KARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRST---------- 348 (887)
Q Consensus 279 ~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss---------- 348 (887)
+|.+.+++ ++..++++.|||++ .+|.+ |+||+|.. +++| +++||+||++...|--..+-++
T Consensus 83 ~A~~~~~~----~~~~Vva~~GDG~~-~~~g~-~~l~~A~~--~~~~-v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp 153 (300)
T PRK11864 83 EALKARGE----KGVIVVGWAGDGGT-ADIGF-QALSGAAE--RNHD-ILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTP 153 (300)
T ss_pred HHHHhhCC----CCcEEEEEEccCcc-ccccH-HHHHHHHH--hCcC-EEEEEECCeeeecCCCCCCCCCcCCCccccCC
Confidence 99988754 13445559999999 77776 99999999 9999 9999999999988843322221
Q ss_pred -------CcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHh----
Q psy9579 349 -------LYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLM---- 416 (887)
Q Consensus 349 -------~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~---- 416 (887)
.++..+++++|+|.+ +++--||.++.+++++|++ .+||.||++.+ ..-+.-.-+|..+.-..
T Consensus 154 ~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s--pC~~~~~~~~~~~~~~~k~Av 227 (300)
T PRK11864 154 GGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA--PCPPGWRFDPDKTIEIARLAV 227 (300)
T ss_pred CCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC--CCCCCCCcChHHHHHHHHHHH
Confidence 234568899999876 7899999999999999985 68999998864 34443333332221110
Q ss_pred -------hH--H----Hhh------CCCHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy9579 417 -------YK--K----IFK------HPGIRELYSNKLKIQK---ILTKNESENMIKEFNDMINSGKSIVN 464 (887)
Q Consensus 417 -------Yr--~----i~~------~~dpi~~y~~~Li~~G---i~t~~e~~~i~~~~~~~l~~a~~~a~ 464 (887)
|+ . +.. .+....-.+++|..+| -+.+++++++++.+.++.+.-...++
T Consensus 228 ~tg~wplye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 228 ETGVWPLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred HcCCceEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 000 0111123455565555 45678888888877777665444333
No 55
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.19 E-value=4.7e-09 Score=127.23 Aligned_cols=463 Identities=14% Similarity=0.144 Sum_probs=254.8
Q ss_pred CcccccccccchhHHHHHhhccC--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDD--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSP 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~ 342 (887)
-.||.-.+.|+|.|++.++.... ....+.=++|+.|||-+ .||.+||++.+|+- ++|..+|+||.+|.+.+..+.
T Consensus 189 GSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEl-dEG~swEA~~~Aa~--~kLdNLi~IVD~N~~qlDG~v 265 (885)
T TIGR00759 189 VSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEM-DEPESKGAITFAAR--EKLDNLTFVINCNLQRLDGPV 265 (885)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhh-ccHHHHHHHHHHHH--hCCCCEEEEEeCCCCccCCcc
Confidence 34666688899999999973221 12235679999999999 99999999999999 999999999999999999988
Q ss_pred CCccc-CCcccccccccCCcEEEE--------------------------------------------------------
Q psy9579 343 NDLRS-TLYCTDIGKIIEAPVFHV-------------------------------------------------------- 365 (887)
Q Consensus 343 ~~~rs-s~~~sd~Ak~~giP~~~V-------------------------------------------------------- 365 (887)
++.-. ...+.++.+++|.-++.|
T Consensus 266 ~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv 345 (885)
T TIGR00759 266 RGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALV 345 (885)
T ss_pred ccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHh
Confidence 76433 357888999999999999
Q ss_pred -------------cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHHH
Q psy9579 366 -------------NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSN 432 (887)
Q Consensus 366 -------------dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~ 432 (887)
||+|+.++++|.+.|.+. -++|++|-+.|-.-+|-.+.-+.. ..| |.
T Consensus 346 ~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~~~~e~~--------n~~-H~-------- 405 (885)
T TIGR00759 346 ADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTVILAKTIKGYGMGDAAESR--------NTA-HQ-------- 405 (885)
T ss_pred hccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEEEEEeeeecCCCChhhCCC--------ccc-cc--------
Confidence 699999999999888753 247999999999888876322211 011 10
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhcc-CC
Q psy9579 433 KLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITN-IP 511 (887)
Q Consensus 433 ~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~-~P 511 (887)
.+.++.+++++.++.+.=.+.+ +..++. +|..+ .+.....+.+.+-.+.+-- +|
T Consensus 406 ----~k~l~~e~l~~~r~~~g~~~~d--~~~~~~-----------~~~~~--------~~~s~e~~y~~~rr~~Lgg~~p 460 (885)
T TIGR00759 406 ----VKKLEVDALKNFRDRFELPLSD--AQVEEL-----------PYYHP--------GEGSPEVRYLLARRQALGGYLP 460 (885)
T ss_pred ----CCCCCHHHHHHHHHHcCCCCCh--hHhccC-----------CCcCC--------CCCCHHHHHHHHHHHHhCCCCC
Confidence 0234444444444333100000 000000 11110 0000011111111111110 11
Q ss_pred CCCcc-----hhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhc-------CCcEEEecccCCC-----Ccccccce
Q psy9579 512 KGFKL-----HKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVIS-------GYGVRLSGQDSGR-----GTFSHRHA 574 (887)
Q Consensus 512 ~~f~~-----h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~-------~~~vrl~GeDv~r-----GtFshRHa 574 (887)
.--.. -|.+. .++. ..++ .-+--+.-.|||+.+|.. |.+|+=+=-|+.| |-|.+ .
T Consensus 461 ~R~~~~~~l~vP~l~-~~~~---~~~~--~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~--~ 532 (885)
T TIGR00759 461 ARRTFAEHLTVPALE-FFGA---LLKG--SGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQ--I 532 (885)
T ss_pred CcCCCCCCCCCCCch-hhHH---HhcC--CCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcc--c
Confidence 10000 01111 1110 0011 001112335667655543 6677777788887 33411 0
Q ss_pred eeeccccccccccCCCcEEecCCCcc----ccCCceEEeccccchHHHHH----HHHhhccCCCCCceEE--eeec----
Q psy9579 575 ILYNQDYQYSEKETDISTYIPLHNVS----KNQAKFHIINSILSEEAILG----FEYGFSTASPNTLTIW--EAQF---- 640 (887)
Q Consensus 575 v~~dq~~~~~~~~~~~~~~~pl~~l~----~~~g~~~V~nspLsE~ailG----~~~G~a~~~~~~l~i~--E~qF---- 640 (887)
=++.. .|..|.|-..=+ .+--.-+++--=|+|.+.++ ++.-||..|...+||- =-||
T Consensus 533 gIy~~---------~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR 603 (885)
T TIGR00759 533 GIYSP---------HGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQR 603 (885)
T ss_pred CccCC---------CCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccc
Confidence 01111 233344443210 11123478888899987654 5666778887766643 3566
Q ss_pred -cccccchhHHHHHHHhhHHHHhcCccCcEEEecccC---CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHH
Q psy9579 641 -GDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY---EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLR 716 (887)
Q Consensus 641 -gDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~---~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr 716 (887)
||.+|-| -|| . .-|+.+=.|.|- -|-|-+|-+. -.-++-..+||+.-.-|+-.++.-.+|+
T Consensus 604 ~gD~~waa---~d~-------~---argfl~g~taGrtTL~gEGlqHqdg--~s~~~~~~~P~~~~ydPafa~Ela~i~~ 668 (885)
T TIGR00759 604 IGDLCWAA---ADQ-------R---ARGFLLGATAGRTTLNGEGLQHEDG--HSLLQAATIPNCIAYDPAFAYEVAVIME 668 (885)
T ss_pred hHHHHHHH---hhh-------c---CCceEeccCCCcccCCCccccCccc--cchHHHhcCCCceeecCchHHHHHHHHH
Confidence 4555443 344 1 124555555553 2334444332 1223446789999999999999999999
Q ss_pred HHHhCCCCCcEEEEccccccccCCCCCcc-cc----CCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcC
Q psy9579 717 YQIIRPIRKPLIIITPKSLLRKKEASSTL-MD----LATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKN 791 (887)
Q Consensus 717 ~q~~~~~r~Plv~~~pK~Llr~~~~~s~~-~d----~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~ 791 (887)
..+++=++.--=+|---++|+.+...... ++ ...|-|+. .++.. .+.+-+..|+.||.+.-..++|++.+.
T Consensus 669 ~g~~rm~~~~~~v~yylt~~ne~~~qp~~p~~~~egIlkG~Y~l--~~~~~--~~~~~~VqLlgSG~il~evl~Aa~lL~ 744 (885)
T TIGR00759 669 DGLRRMYGEQEDVFYYVTVMNENYVQPPMPEGAEEGILKGLYRF--ETSTE--EKAKGHVQLLGSGAIMRAVIEAAQLLA 744 (885)
T ss_pred HHHHHHhhCCCCEEEEEEecCCCCCCCCCCcchHHhHHhCceec--ccCCC--CCCCccEEEEeccHHHHHHHHHHHHHH
Confidence 88876333210011111122222221111 11 11233322 11110 111123479999998888888776432
Q ss_pred ---CCcEEEEeccccCCCCHHHH
Q psy9579 792 ---KNDVVIIRIEQLYPFPNEDF 811 (887)
Q Consensus 792 ---~~~v~vi~l~~L~P~~~~~i 811 (887)
.+.+.|.-+-+..=|..+..
T Consensus 745 ~~~gV~adVwSvTS~~eL~Rd~~ 767 (885)
T TIGR00759 745 ADWGVASDVWSVTSFTELARDGH 767 (885)
T ss_pred HHHCCCCcEEECCCHHHHHHhHH
Confidence 26788888777665655544
No 56
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1e-10 Score=121.07 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=111.1
Q ss_pred CCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCC
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSP 342 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~ 342 (887)
+...||--.+||+|+|.|.|+.+. +.-+.++.|||-. .||.+||++..|+- |+|-.+|-||.-|..-.+-.+
T Consensus 117 stGSLGqGLsvavGmAlg~kl~~~-----~~~VyvilGDGEl-~EG~~WEAam~Aah--~~L~NLiaivD~N~~QldG~t 188 (243)
T COG3959 117 STGSLGQGLSVAVGMALGAKLKGS-----PYRVYVILGDGEL-DEGQVWEAAMTAAH--YKLDNLIAIVDRNKLQLDGET 188 (243)
T ss_pred cCCcccccchHHHHHHHHHhhcCC-----CceEEEEecCccc-ccccHHHHHHHHHH--hccCcEEEEEecCCcccCCch
Confidence 345678889999999999999987 8889999999999 99999999999999 999999999999999999888
Q ss_pred CCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHc-cCCcEEEEEEee
Q psy9579 343 NDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMK-FKKDCIINIICF 398 (887)
Q Consensus 343 ~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~-~~~PvlIe~vtY 398 (887)
++..+...+.++-++||..++.|||+|+++++.|...| +. .++|.+|-+.|-
T Consensus 189 ~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~----~~~~~rP~~IIa~Tv 241 (243)
T COG3959 189 EEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKA----KGSKGRPTVIIAKTV 241 (243)
T ss_pred hhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhh----hccCCCCeEEEEecc
Confidence 88888899999999999999999999999998776554 34 339999988774
No 57
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.12 E-value=1.6e-10 Score=128.76 Aligned_cols=134 Identities=18% Similarity=0.069 Sum_probs=107.9
Q ss_pred CcccccccccchhHHHHHhhcc-----CCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceec
Q psy9579 265 SHLEIINPVVEGSAKARMERRD-----DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFT 339 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~-----~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~S 339 (887)
-.||.-.+.|+|+|+|.|..+. +....+.-++|+.|||.. .+|++||++.+|+- ++|..+|.|+.+|++.+.
T Consensus 111 GsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel-~EG~~~EA~~~A~~--~~L~nLi~i~D~N~~q~d 187 (332)
T PF00456_consen 111 GSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGEL-QEGSVWEAASLAGH--YKLDNLIVIYDSNGIQID 187 (332)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHH-HSHHHHHHHHHHHH--TT-TTEEEEEEEESEETT
T ss_pred cchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccc-cchhhHHHHHHHHH--hCCCCEEEEEecCCcccC
Confidence 3567778999999999987542 112236689999999999 99999999999999 999999999999999999
Q ss_pred cCCCCcccCCcccccccccCCcEEEE-cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCC
Q psy9579 340 TSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNE 405 (887)
Q Consensus 340 T~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne 405 (887)
.+++...+ ..+.++-++||.-++.| ||+|+++++.|...|.. .-++|++|.+.|-.-.|-+.
T Consensus 188 g~~~~~~~-~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~ 250 (332)
T PF00456_consen 188 GPTDIVFS-EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPF 250 (332)
T ss_dssp EEGGGTHH-SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTT
T ss_pred CCcccccc-hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchh
Confidence 88775443 56788999999999999 99999999999988742 33799999999998888843
No 58
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.11 E-value=9.5e-11 Score=116.88 Aligned_cols=113 Identities=19% Similarity=0.093 Sum_probs=88.9
Q ss_pred CCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC
Q psy9579 264 PSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN 343 (887)
Q Consensus 264 pShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~ 343 (887)
.+.+|...|.|+|++.|.+ +..++++.|||++ .. ..++|+.|.. |++| +++||.||+....+...
T Consensus 45 ~g~~G~~~~~a~Gaa~a~~---------~~~vv~~~GDG~~-~~--~~~~l~ta~~--~~~~-~~~iv~nN~~~~~~~~~ 109 (168)
T cd00568 45 FGAMGYGLPAAIGAALAAP---------DRPVVCIAGDGGF-MM--TGQELATAVR--YGLP-VIVVVFNNGGYGTIRMH 109 (168)
T ss_pred chhhhhhHHHHHHHHHhCC---------CCcEEEEEcCcHH-hc--cHHHHHHHHH--cCCC-cEEEEEECCccHHHHHH
Confidence 3667888999999998864 3468999999999 66 5699999999 9999 99999999987776432
Q ss_pred -----------CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 -----------DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 -----------~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
..........+++++|+++++||+ ++++..+.+.| ++.++|+|||+.|
T Consensus 110 ~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a----~~~~~p~~i~v~~ 168 (168)
T cd00568 110 QEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEA----LAAGGPALIEVKT 168 (168)
T ss_pred HHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEC
Confidence 112234677899999999999986 66665555554 4779999999975
No 59
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.04 E-value=8.6e-09 Score=115.96 Aligned_cols=134 Identities=16% Similarity=0.045 Sum_probs=113.2
Q ss_pred CcccccccccchhHHHHHhhccC--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDD--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSP 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~ 342 (887)
-.||.-.++|+|.|+|.++.... ....+.-++|+.|||.+ .+|.+||++++|+. ++|.-+|.||.+|++.+..++
T Consensus 118 GSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl-~EG~vwEA~~~Ag~--~kL~NLivIvD~N~~qidG~t 194 (386)
T cd02017 118 VSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEM-DEPESLGAIGLAAR--EKLDNLIFVVNCNLQRLDGPV 194 (386)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEccccc-ccHHHHHHHHHHHH--hCCCCEEEEEECCCCccCCcc
Confidence 45677789999999999973210 11135678999999999 99999999999999 999889999999999999988
Q ss_pred CCc-ccCCcccccccccCCcEEEEc-------------------------------------------------------
Q psy9579 343 NDL-RSTLYCTDIGKIIEAPVFHVN------------------------------------------------------- 366 (887)
Q Consensus 343 ~~~-rss~~~sd~Ak~~giP~~~Vd------------------------------------------------------- 366 (887)
.+. .....+.++.++||.-++.||
T Consensus 195 ~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~ 274 (386)
T cd02017 195 RGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALV 274 (386)
T ss_pred cccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHh
Confidence 774 245688999999999999998
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCC
Q psy9579 367 --------------GDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN 404 (887)
Q Consensus 367 --------------G~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHn 404 (887)
|+|+++++.|+..|.+. -++|++|-+.|-.-+|-+
T Consensus 275 ~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 275 TDLSDEDLWALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred hcccHHhhhhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCC
Confidence 99999999998876642 368999999999988876
No 60
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.02 E-value=4.7e-10 Score=113.84 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=87.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
+.+|...|.|+|++.|.+ +..++++.|||+| ..+. ..|..+.. |++| +++||.||+ ||+++...
T Consensus 49 g~mG~~lp~aiGaala~~---------~~~vv~i~GDG~f-~~~~--~el~ta~~--~~~p-~~~iV~nN~~~~~~~~~~ 113 (178)
T cd02002 49 GGLGWGLPAAVGAALANP---------DRKVVAIIGDGSF-MYTI--QALWTAAR--YGLP-VTVVILNNRGYGALRSFL 113 (178)
T ss_pred ccccchHHHHHHHHhcCC---------CCeEEEEEcCchh-hccH--HHHHHHHH--hCCC-eEEEEEcCccHHHHHHHH
Confidence 666777899999998853 3468999999999 7775 56778888 9999 999999997 89865211
Q ss_pred C-----------------cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 D-----------------LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ~-----------------~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. ........++|++||++.++|++ ++++..+.++|++ .++|+|||+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 114 KRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred HHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 01224677899999999999988 8888777777764 58899999863
No 61
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=98.97 E-value=1.1e-09 Score=110.87 Aligned_cols=112 Identities=24% Similarity=0.165 Sum_probs=83.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
+.+|.-.|.|+|++.|.. +..++|+.|||++ ... .+.|..|.- |++| +++||.|| +||+.....
T Consensus 48 g~mG~~lp~AiGa~la~~---------~~~vv~i~GDG~f-~~~--~~el~ta~~--~~lp-v~ivv~NN~~~~~~~~~~ 112 (172)
T cd02004 48 GTLGVGLGYAIAAALARP---------DKRVVLVEGDGAF-GFS--GMELETAVR--YNLP-IVVVVGNNGGWYQGLDGQ 112 (172)
T ss_pred CcccchHHHHHHHHHhCC---------CCeEEEEEcchhh-cCC--HHHHHHHHH--cCCC-EEEEEEECcccccchhhh
Confidence 445666788888887742 3468999999999 654 466888888 9999 88888887 588876322
Q ss_pred Cc-----------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 DL-----------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ~~-----------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
.. ........+|++||++.++|+ +++++..+.+.|. +.++|+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i 171 (172)
T cd02004 113 QLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL----ASGKPALINVII 171 (172)
T ss_pred hhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----HcCCCEEEEEEc
Confidence 21 123456789999999999998 5777766666655 458999999975
No 62
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.77 E-value=1.4e-08 Score=103.93 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=79.4
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccc-cccHHHHHHHHhccCCCCC-CCEEEEEEeCCceeccCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFS-GQGVVMETLNFSKIDSYNT-GGTIHIIINNQIGFTTSP 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~-gqG~v~EaLN~A~l~~~~l-pGvIfiv~NNq~g~ST~~ 342 (887)
..+|...|.|+|+++|.. ..++|+.|||++. +.+.++++.+ +++ |=+++|+.||+||+....
T Consensus 42 g~mG~~lp~AiGaala~~----------~~vv~i~GDG~f~m~~~el~ta~~------~~~~~l~vvV~NN~~~~~~~~~ 105 (179)
T cd03372 42 GSMGLASSIGLGLALAQP----------RKVIVIDGDGSLLMNLGALATIAA------EKPKNLIIVVLDNGAYGSTGNQ 105 (179)
T ss_pred cchhhHHHHHHHHHhcCC----------CcEEEEECCcHHHhCHHHHHHHHH------cCCCCEEEEEEcCccccccCCC
Confidence 556777899999998854 2589999999992 2334444433 443 415555677788887532
Q ss_pred CCcc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 343 NDLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 343 ~~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.... .......+|++||++.+.|+| +++++..+.++|. ++|+|||+.+-
T Consensus 106 ~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~ 155 (179)
T cd03372 106 PTHAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIK 155 (179)
T ss_pred CCCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEc
Confidence 2211 135678899999999999998 8988887777775 68999999984
No 63
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=98.76 E-value=2.7e-08 Score=101.43 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=81.8
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC-
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP- 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~- 342 (887)
+.+|...|.++|++.|.. +..+|++.|||+| ..+ +.| |..+.. |++| +++||.||+ ||+.+..
T Consensus 51 g~mG~~~~~aiGa~~a~~---------~~~vv~i~GDG~f-~~~-~~e-l~t~~~--~~lp-~~~iv~NN~~~~~~~~~~ 115 (178)
T cd02014 51 ATMGNGLPGAIAAKLAYP---------DRQVIALSGDGGF-AML-MGD-LITAVK--YNLP-VIVVVFNNSDLGFIKWEQ 115 (178)
T ss_pred chhhhHHHHHHHHHHhCC---------CCcEEEEEcchHH-Hhh-HHH-HHHHHH--hCCC-cEEEEEECCchhHHHHHH
Confidence 345667888888887742 4468999999999 777 788 444667 9999 999999996 7864311
Q ss_pred ------CCc--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 343 ------NDL--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 343 ------~~~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
... .+..+...+|++||++.+.|+ +++++..+.+.| .+.++|+|||+.+-
T Consensus 116 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a----~~~~~p~liev~~~ 173 (178)
T cd02014 116 EVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEA----LAADGPVVIDVVTD 173 (178)
T ss_pred HHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeC
Confidence 001 112466789999999999987 577765554444 45689999999974
No 64
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.75 E-value=4.5e-07 Score=108.99 Aligned_cols=239 Identities=12% Similarity=0.182 Sum_probs=148.1
Q ss_pred chHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHh
Q psy9579 614 SEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQ 693 (887)
Q Consensus 614 sE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq 693 (887)
+|-+.+..++|.|+.|-|+++.+= | .|=-++.|+|...+.+- ...|+|+.+=.+. |-++.+..+ =.++++
T Consensus 54 ~E~~a~~~~~GAs~aG~ra~t~ts---~---~Gl~~~~e~l~~~~~~g--~~~~iV~~~~~~~-gp~~~~~~q-~d~~~~ 123 (595)
T TIGR03336 54 NEKVAVEVAAGAAWSGLRAFCTMK---H---VGLNVAADPLMTLAYTG--VKGGLVVVVADDP-SMHSSQNEQ-DTRHYA 123 (595)
T ss_pred CHHHHHHHHHHHHhcCcceEEEcc---C---CchhhhHHHhhhhhhhc--CcCceEEEEccCC-CCccchhhH-hHHHHH
Confidence 899999999999999999876332 1 22234578887643222 2467777765442 112222222 123443
Q ss_pred hhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCCCcccc---------CC--CCcceee----
Q psy9579 694 LCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEASSTLMD---------LA--TGKFNKI---- 756 (887)
Q Consensus 694 ~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~s~~~d---------~~--~g~f~~~---- 756 (887)
.- -+|-|+.|+|+.++|++.+.+.. ..++-||+++.-+.|-.....+ .+.+ +. +..|...
T Consensus 124 ~~--~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (595)
T TIGR03336 124 KF--AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDV-ELGEIPKEEVVKGFEKDPERYVMVPAIA 200 (595)
T ss_pred Hh--cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeE-ecCCCcccccccCCCCChhhcCCCchhH
Confidence 33 39999999999999999999864 5689999999887654332221 1111 11 0111110
Q ss_pred -------------c----cc--cccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHHh
Q psy9579 757 -------------I----NE--IDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKK 817 (887)
Q Consensus 757 -------------i----~~--~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k 817 (887)
+ .+ .... ...+-+.+|||||.++...+++.+++| +++.|+++++++|||.+.|.+.+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~di~iv~~G~~~~~a~ea~~~~G-i~~~v~~~~~i~Pld~~~i~~~~~~ 278 (595)
T TIGR03336 201 RVRHKKLLSKQHKLREELNESPLNRL-EINGAKIGVIASGIAYNYVKEALERLG-VDVSVLKIGFTYPVPEGLVEEFLSG 278 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcee-ccCCCCEEEEEcCHHHHHHHHHHHHcC-CCeEEEEeCCCCCCCHHHHHHHHhc
Confidence 0 00 0000 111234599999999988888877776 6999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCC-CCCchhhHHH
Q psy9579 818 FRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASP-ASGYYSKHCK 875 (887)
Q Consensus 818 ~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~-a~g~~~~h~~ 875 (887)
+.+ ||+++|.. .|+ ..+...+.+.. ..+++..|.+..-.| ..|+...+..
T Consensus 279 ~~~---vivvEe~~--~~~-~~~~~~~~~~~--~~~v~~~G~~d~fi~~~~~Ld~~~i~ 329 (595)
T TIGR03336 279 VEE---VLVVEELE--PVV-EEQVKALAGTA--GLNIKVHGKEDGFLPREGELNPDIVV 329 (595)
T ss_pred CCe---EEEEeCCc--cHH-HHHHHHHHHhc--CCCeEEecccCCccCcccCcCHHHHH
Confidence 887 56666643 443 33333332221 126788888865444 3445544333
No 65
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.71 E-value=2.3e-08 Score=102.54 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=80.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~-- 341 (887)
+.+|.-.|.|+|++.|.+ +..+|++.|||+| .- .+.| |..|.. |++| +++||.||+. ++...
T Consensus 50 g~mG~~lp~aiGa~la~~---------~~~vv~i~GDG~f-~~-~~~e-L~ta~~--~~lp-i~ivV~nN~~~~~~~~~~ 114 (186)
T cd02015 50 GTMGFGLPAAIGAKVARP---------DKTVICIDGDGSF-QM-NIQE-LATAAQ--YNLP-VKIVILNNGSLGMVRQWQ 114 (186)
T ss_pred cchhchHHHHHHHHHhCC---------CCeEEEEEcccHH-hc-cHHH-HHHHHH--hCCC-eEEEEEECCccHHHHHHH
Confidence 456677888999887742 3457899999999 43 3455 777888 9999 9888888885 33210
Q ss_pred ----CC-----CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 342 ----PN-----DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 342 ----~~-----~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. ......+.+.+|+++|+++++|++ ++++-.+ ++.+.+.++|+|||+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~a----l~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 115 ELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAA----LKEALASDGPVLLDVLVDP 175 (186)
T ss_pred HHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHH----HHHHHhCCCCEEEEEEeCC
Confidence 00 111234677899999999999987 5555444 4444557899999999854
No 66
>PRK07524 hypothetical protein; Provisional
Probab=98.67 E-value=3.3e-08 Score=117.09 Aligned_cols=117 Identities=16% Similarity=0.039 Sum_probs=89.1
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-Cceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST--- 340 (887)
..+|.-.|.|+|++.|.. +.-+|++.|||+| . -.+.| |..|.- |++| +++||.|| .||+..
T Consensus 407 g~mG~~lp~aiGa~lA~p---------~~~vv~i~GDG~f-~-~~~~e-l~ta~~--~~lp-i~~vV~NN~~~g~i~~~~ 471 (535)
T PRK07524 407 GTLGYGLPAAIGAALGAP---------ERPVVCLVGDGGL-Q-FTLPE-LASAVE--ADLP-LIVLLWNNDGYGEIRRYM 471 (535)
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEEcchHH-h-hhHHH-HHHHHH--hCCC-eEEEEEECCchHHHHHHH
Confidence 345666888999888841 4569999999999 4 44666 667777 9999 99999998 787542
Q ss_pred ------CCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCC
Q psy9579 341 ------SPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLG 402 (887)
Q Consensus 341 ------~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~G 402 (887)
+........+...+|++||++++.|+ |++++..+.+.|+ +.++|+|||+.++|+.|
T Consensus 472 ~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 472 VARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF----ARPGPTLIEVDQACWFA 533 (535)
T ss_pred HHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCcccc
Confidence 11111123466789999999999996 8888877777765 46899999999999886
No 67
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.64 E-value=3.1e-08 Score=102.77 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=85.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEE-eCCceeccCC-
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIII-NNQIGFTTSP- 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~-NNq~g~ST~~- 342 (887)
..+|.-.|.|+|++.|.. +.-+||+.|||+| .-. ..|-.+ |.- |++| +++||. ||.||+....
T Consensus 53 g~mG~~lpaaiGa~la~p---------~r~vv~i~GDG~f-~m~-~~eL~T-a~~--~~lp-vi~vV~NN~~yg~~~~~q 117 (196)
T cd02013 53 GNCGYALPAIIGAKAAAP---------DRPVVAIAGDGAW-GMS-MMEIMT-AVR--HKLP-VTAVVFRNRQWGAEKKNQ 117 (196)
T ss_pred cccccHHHHHHHHHHhCC---------CCcEEEEEcchHH-hcc-HHHHHH-HHH--hCCC-eEEEEEECchhHHHHHHH
Confidence 345667888999887742 3358999999999 664 566655 555 8999 888885 5556764310
Q ss_pred ----CC-----cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 343 ----ND-----LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 343 ----~~-----~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. ..+..+...+|++||++.++|+. ++++..+.++|++.++. ++|+|||+.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~--~~el~~al~~a~~~~~~-~~p~liev~v~~ 180 (196)
T cd02013 118 VDFYNNRFVGTELESESFAKIAEACGAKGITVDK--PEDVGPALQKAIAMMAE-GKTTVIEIVCDQ 180 (196)
T ss_pred HHHcCCCcccccCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHhcCCC-CCeEEEEEEeCc
Confidence 00 01235667899999999999885 88888888888876555 789999999854
No 68
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=98.62 E-value=7.4e-09 Score=99.38 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=74.9
Q ss_pred ccCCCCceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHH
Q psy9579 763 IIDPKKIKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQI 840 (887)
Q Consensus 763 ~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i 840 (887)
++++++| +|||||.+++.+++|++.+ ..+++.||+++++.|||.+.|.++++++.+ ++++.|...++|+++.|
T Consensus 6 ~~~g~di--~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~---vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 6 LREGADI--TIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGR---VVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp EESSSSE--EEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHH---HHHSETCESEEEEHSSH
T ss_pred EeCCCCE--EEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhcc---ccccccccccccHHHHH
Confidence 3467777 8999999888888776643 236999999999999999999999999988 68899988999999999
Q ss_pred HHHHHHhhcc--CCcEEEecCCC
Q psy9579 841 KENILKYLNS--TQKLIYVGRSC 861 (887)
Q Consensus 841 ~~~i~~~~~~--~~~~~~~gr~~ 861 (887)
...+.+.... ..+++.+|-++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d 103 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPD 103 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-S
T ss_pred HHHHHHhCCccCCCCeEEEEECC
Confidence 9999885222 24555555443
No 69
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.62 E-value=1.2e-07 Score=113.23 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=92.7
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~-- 341 (887)
+.+|...|.++|++.|. . +.-+|++.|||+| ..+...+.|+.|.- |++| +++||.|| +||+.-.
T Consensus 430 gsmG~~lp~aiGa~la~----p-----~~~vv~i~GDG~f-~~~~~e~~l~ta~~--~~l~-~~ivv~NN~~yg~~~~~~ 496 (569)
T PRK08327 430 GGLGWALGAALGAKLAT----P-----DRLVIATVGDGSF-IFGVPEAAHWVAER--YGLP-VLVVVFNNGGWLAVKEAV 496 (569)
T ss_pred CCCCcchHHHHHHhhcC----C-----CCeEEEEecCcce-eecCcHHHHHHHHH--hCCC-EEEEEEeCcccccchhHH
Confidence 45666677777777662 1 4569999999999 88866667899999 9999 99999998 6776320
Q ss_pred --------------C-CCcc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 --------------P-NDLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 --------------~-~~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. .... +..+...+|++||+++++|+ +++++..+++.|++..+++++|+|||+.+
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 497 LEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred hhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 0001 22456779999999999997 99999999999999888888999999985
No 70
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.57 E-value=4.9e-06 Score=94.05 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=122.0
Q ss_pred EeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchh-HHHHHHHhhHHHHhcCccCcEEEecc--cC-C-CCCcc
Q psy9579 608 IINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQ-VIIDQFISSSEEKWGRISGLTLMLPH--GY-E-GQGPE 682 (887)
Q Consensus 608 V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq-~~~Dq~i~~~~~kw~~~sglv~~lP~--G~-~-g~Gpe 682 (887)
++. .=+|-+.++.++|+|+.|-|+++.- +.+.. .+..++ .- .+-+ ..++||.+=. |- . .--++
T Consensus 51 ~vq-~E~E~aA~~~a~GAs~aG~Ra~taT-------Sg~Gl~lm~E~l-~~-a~~~--e~P~v~v~v~R~~p~~g~t~~e 118 (352)
T PRK07119 51 FVQ-AESEVAAINMVYGAAATGKRVMTSS-------SSPGISLKQEGI-SY-LAGA--ELPCVIVNIMRGGPGLGNIQPS 118 (352)
T ss_pred EEe-eCcHHHHHHHHHHHHhhCCCEEeec-------CcchHHHHHHHH-HH-HHHc--cCCEEEEEeccCCCCCCCCcch
Confidence 444 7899999999999999999987632 11110 111121 11 1111 2344444321 11 0 11234
Q ss_pred ccCchHHHHHhh--hc--CCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCCCcccc------CC-
Q psy9579 683 HSSARLERFLQL--CA--NNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEASSTLMD------LA- 749 (887)
Q Consensus 683 HSs~r~Er~lq~--~~--~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~s~~~d------~~- 749 (887)
|+ .+++++ +. +-+|.|+.|+||.++|.+.+.+.+ .+++-||+++.-+.|-.....+ .+.+ ..
T Consensus 119 q~----D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v-~~~~~~~~~~~~~ 193 (352)
T PRK07119 119 QG----DYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPV-EFPPRKKRPLPPK 193 (352)
T ss_pred hH----HHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeee-cCCchhhcccCCC
Confidence 54 345543 21 347999999999999999999865 4688999999888753211111 1111 10
Q ss_pred ----CCcce--eec------------------cc-c-------cccc--CCCCceEEEEEechHHHHHHHHHHH---cCC
Q psy9579 750 ----TGKFN--KII------------------NE-I-------DDII--DPKKIKRIIACSGKIYYDLFNFRKK---KNK 792 (887)
Q Consensus 750 ----~g~f~--~~i------------------~~-~-------~~~~--~~~~v~r~i~~~G~~~~~l~~~~~~---~~~ 792 (887)
.|... ... .. - .... ..++-+.+|||||.++..++++.+. +|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~G- 272 (352)
T PRK07119 194 DWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEG- 272 (352)
T ss_pred CCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcC-
Confidence 11110 000 00 0 0000 0124456999999988888777654 34
Q ss_pred CcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEec
Q psy9579 793 NDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQD 829 (887)
Q Consensus 793 ~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qE 829 (887)
+++.+|++++|+|||.+.|.+.++++.+ |+++++
T Consensus 273 i~v~vi~~~~l~Pfp~~~i~~~l~~~k~---VivvE~ 306 (352)
T PRK07119 273 IKVGLFRPITLWPFPEKALEELADKGKG---FLSVEM 306 (352)
T ss_pred CeEEEEeeceecCCCHHHHHHHHhCCCE---EEEEeC
Confidence 6999999999999999999999999887 677776
No 71
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.52 E-value=1.4e-07 Score=111.73 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=84.8
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
+.+|...|.|+|++.|.. +..+||+.|||+| ..+. +.|+.|.- |++| +++||.||+ ||+...
T Consensus 407 g~mG~~lp~aiGa~la~p---------~~~vv~i~GDG~f-~~~~--~eL~ta~~--~~lp-~~~vv~NN~~~~~~~~~~ 471 (530)
T PRK07092 407 GGLGYGLPAAVGVALAQP---------GRRVIGLIGDGSA-MYSI--QALWSAAQ--LKLP-VTFVILNNGRYGALRWFA 471 (530)
T ss_pred CcccchHHHHHHHHHhCC---------CCeEEEEEeCchH-hhhH--HHHHHHHH--hCCC-cEEEEEeChHHHHHHHHH
Confidence 567777899999988742 3468999999999 7774 77888998 9999 999999999 887421
Q ss_pred --------CCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 --------PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 --------~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
............+|++||+++++|+ +++++..+.+.| ++.++|+|||+.+
T Consensus 472 ~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a----~~~~~p~liev~~ 529 (530)
T PRK07092 472 PVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARA----LAADGPVLVEVEV 529 (530)
T ss_pred HhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEc
Confidence 0111123456789999999999998 466665555544 4578999999975
No 72
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.51 E-value=7.5e-06 Score=93.32 Aligned_cols=207 Identities=14% Similarity=0.182 Sum_probs=125.7
Q ss_pred EeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc--cCCCCCccccC
Q psy9579 608 IINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH--GYEGQGPEHSS 685 (887)
Q Consensus 608 V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~--G~~g~GpeHSs 685 (887)
++..- ||-+.++.++|+|+.|-|+++-- =..|=-.+..++--.+.+ .-|+||..-. |-..+-|.+++
T Consensus 51 ~vq~E-~E~aA~~~a~GAs~aG~Ra~TaT------Sg~Gl~lm~E~~~~a~~~----e~P~Viv~~~R~gp~tg~p~~~~ 119 (376)
T PRK08659 51 FIQME-DEIASMAAVIGASWAGAKAMTAT------SGPGFSLMQENIGYAAMT----ETPCVIVNVQRGGPSTGQPTKPA 119 (376)
T ss_pred EEEeC-chHHHHHHHHhHHhhCCCeEeec------CCCcHHHHHHHHHHHHHc----CCCEEEEEeecCCCCCCCCCCcC
Confidence 44444 99999999999999999976610 011112234444111112 3577777632 32222355555
Q ss_pred chHHHHHhhhc---CCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCCCcc--ccCC-------C-
Q psy9579 686 ARLERFLQLCA---NNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEASSTL--MDLA-------T- 750 (887)
Q Consensus 686 ~r~Er~lq~~~---~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~s~~--~d~~-------~- 750 (887)
+ -+-....-. +-++.|+.|+|+.++|.+...+.. .+++-||+++.-+.|=.....+... ++.. +
T Consensus 120 q-~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~ 198 (376)
T PRK08659 120 Q-GDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKV 198 (376)
T ss_pred c-HHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCC
Confidence 4 233333222 447999999999999999998865 4688999999887533221111100 0000 0
Q ss_pred --C---ccee------e---cc------------------------------cc-----------ccc--cCCCCceEEE
Q psy9579 751 --G---KFNK------I---IN------------------------------EI-----------DDI--IDPKKIKRII 773 (887)
Q Consensus 751 --g---~f~~------~---i~------------------------------~~-----------~~~--~~~~~v~r~i 773 (887)
. .|.. + .+ +. ... -..++-+.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~i 278 (376)
T PRK08659 199 PPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVV 278 (376)
T ss_pred CccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEE
Confidence 0 0100 0 00 00 000 0112345699
Q ss_pred EEechHHHHHHHHHHHc---CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecC
Q psy9579 774 ACSGKIYYDLFNFRKKK---NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDE 830 (887)
Q Consensus 774 ~~~G~~~~~l~~~~~~~---~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe 830 (887)
||||.++..+.++.+.+ | ++|.++++++|+|||.+.|.+.++++.+ |++++|-
T Consensus 279 v~~Gs~~~~a~eAv~~Lr~~G-~~v~~l~~~~l~Pfp~~~i~~~~~~~k~---VivvEe~ 334 (376)
T PRK08659 279 VAYGSVARSARRAVKEAREEG-IKVGLFRLITVWPFPEEAIRELAKKVKA---IVVPEMN 334 (376)
T ss_pred EEeCccHHHHHHHHHHHHhcC-CceEEEEeCeecCCCHHHHHHHHhcCCE---EEEEeCC
Confidence 99999998888876543 5 6899999999999999999999988766 6777664
No 73
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.49 E-value=4.5e-07 Score=93.69 Aligned_cols=116 Identities=18% Similarity=0.124 Sum_probs=79.7
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
..+|.-.|.|+|++.|.. +.-+|++.|||+| .- ..+.|..+.- ++++.+++||.||+ ||+.....
T Consensus 48 g~mG~~lpaAiGaala~p---------~~~Vv~i~GDG~f-~m--~~~eL~ta~~--~~l~~i~ivV~NN~~yg~~~~~~ 113 (188)
T cd03371 48 GSMGHASQIALGIALARP---------DRKVVCIDGDGAA-LM--HMGGLATIGG--LAPANLIHIVLNNGAHDSVGGQP 113 (188)
T ss_pred CccccHHHHHHHHHHhCC---------CCcEEEEeCCcHH-Hh--hccHHHHHHH--cCCCCcEEEEEeCchhhccCCcC
Confidence 667777888999888753 2347899999999 22 1234555555 77633777777777 44432111
Q ss_pred CcccCCcccccccccCCcE-EEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeec
Q psy9579 344 DLRSTLYCTDIGKIIEAPV-FHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRK 400 (887)
Q Consensus 344 ~~rss~~~sd~Ak~~giP~-~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~ 400 (887)
........+.+|++||++. ..|+ +++++..+.++|++ .++|+|||+.+=+-
T Consensus 114 ~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~ 165 (188)
T cd03371 114 TVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPG 165 (188)
T ss_pred CCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCC
Confidence 1112356788999999997 5887 89998888887763 47899999998443
No 74
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.47 E-value=3e-07 Score=98.52 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=81.8
Q ss_pred cCCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS 341 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~ 341 (887)
+...|-++-...|.|.|.|+.+.+. +.-+|+++||||+ .-|..+|+||-+.- .+.+ +|.|..+|+-.|+-+
T Consensus 108 f~~GHsstsiSaa~Gma~ar~l~~~-----~~~vVaVIGDGal-t~Gma~EALN~~g~--~~~~-liVILNDN~mSIs~n 178 (270)
T PF13292_consen 108 FGAGHSSTSISAALGMAVARDLKGE-----DRKVVAVIGDGAL-TGGMAFEALNNAGH--LKSN-LIVILNDNEMSISPN 178 (270)
T ss_dssp S--SSSS-HHHHHHHHHHHHHHHTS--------EEEEEETTGG-GSHHHHHHHHHHHH--HT-S-EEEEEEE-SBSSSB-
T ss_pred ccCCccHhHHHHHHHHHHHHHhcCC-----CCcEEEEECCcch-hHHHHHHHHHHHHh--cCCC-EEEEEeCCCcccCCC
Confidence 3346777778899999999999886 7789999999999 99999999999988 8889 999999999988754
Q ss_pred C-------CCcccCC-c-----------------------cccccccc--------CCcEE-EEcCCCHHHHHHHHHHHH
Q psy9579 342 P-------NDLRSTL-Y-----------------------CTDIGKII--------EAPVF-HVNGDDPESVILVTKIAV 381 (887)
Q Consensus 342 ~-------~~~rss~-~-----------------------~sd~Ak~~--------giP~~-~VdG~D~~AV~~a~~~A~ 381 (887)
. ..-++++ | ..+-.|.. |+-.+ -|||+|.+++..+.+.+.
T Consensus 179 vGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K 258 (270)
T PF13292_consen 179 VGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAK 258 (270)
T ss_dssp -SSHCCC-------------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHC
T ss_pred cchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHh
Confidence 2 1222211 1 01112222 44444 589999999988766554
Q ss_pred HHHHccCCcEEEEEEe
Q psy9579 382 EYRMKFKKDCIINIIC 397 (887)
Q Consensus 382 e~~r~~~~PvlIe~vt 397 (887)
+.++||||+++|
T Consensus 259 ----~~~gPvllHV~T 270 (270)
T PF13292_consen 259 ----DIDGPVLLHVIT 270 (270)
T ss_dssp ----CSSSEEEEEEE-
T ss_pred ----cCCCCEEEEEeC
Confidence 579999999986
No 75
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.46 E-value=3e-07 Score=95.69 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=81.0
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC-
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN- 343 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~- 343 (887)
.+|.-.|-|+|++.|.. +.-+||+.|||+| .=.. .| |--|.- |++| +++||.||+ ||+.....
T Consensus 58 smG~~lpaaiGa~la~p---------~~~vv~i~GDG~f-~m~~-~e-L~Ta~~--~~lp-viivV~NN~~yg~~~~~q~ 122 (202)
T cd02006 58 PLGWTVPAALGVAAADP---------DRQVVALSGDYDF-QFMI-EE-LAVGAQ--HRIP-YIHVLVNNAYLGLIRQAQR 122 (202)
T ss_pred chhhhhHHHHhHHhhCC---------CCeEEEEEeChHh-hccH-HH-HHHHHH--hCCC-eEEEEEeCchHHHHHHHHH
Confidence 35656788888888753 3357999999999 3222 23 223455 9999 999999987 56432100
Q ss_pred -----------Ccc--------cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 -----------DLR--------STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 -----------~~r--------ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
... ...+.+.+|++||++.++|+ +++++-.+.+.|++..++.++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i 193 (202)
T cd02006 123 AFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred HhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEe
Confidence 000 12456779999999999984 58888888888887665568899999997
No 76
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.46 E-value=4.1e-07 Score=92.88 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=80.8
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
..+|.-.|.|+|++.|... .-+|++.|||++ .... .+.|..|.- |++| +++||.||+ ||++-...
T Consensus 51 g~mG~gl~~AiGa~la~p~---------~~Vv~i~GDG~f-~~~g-~~eL~ta~~--~~l~-i~vvV~nN~~~g~~~~~~ 116 (178)
T cd02008 51 TCMGASIGVAIGMAKASED---------KKVVAVIGDSTF-FHSG-ILGLINAVY--NKAN-ITVVILDNRTTAMTGGQP 116 (178)
T ss_pred ccCccHHHHHhhHHhhCCC---------CCEEEEecChHH-hhcc-HHHHHHHHH--cCCC-EEEEEECCcceeccCCCC
Confidence 3456668889999888642 236889999999 5422 355555777 9999 766666665 45432110
Q ss_pred C--------cc-cCCcccccccccCCcEEEE-cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 D--------LR-STLYCTDIGKIIEAPVFHV-NGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ~--------~r-ss~~~sd~Ak~~giP~~~V-dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. .. +..+...+|++||++.++| |++|.+++.++.+.|.+ .++|+||++.+
T Consensus 117 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 117 HPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred CCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 00 1246778999999999999 89999988888888763 47899999864
No 77
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.45 E-value=6.7e-06 Score=94.01 Aligned_cols=217 Identities=9% Similarity=0.083 Sum_probs=132.8
Q ss_pred cccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEec--ccCCCCCccccCchH
Q psy9579 611 SILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLP--HGYEGQGPEHSSARL 688 (887)
Q Consensus 611 spLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP--~G~~g~GpeHSs~r~ 688 (887)
..=||-+.++.++|+|++|-|+++ +.=| .|=-.+.|.+...+.. ..++||-.- .|- +.++-|..+ -
T Consensus 54 ~~E~E~aA~~~aiGAs~aGaRa~T---aTSg---~Gl~lm~E~l~~aa~~----~lPiVi~~~~R~~p-~~~~~~~~q-~ 121 (390)
T PRK08366 54 PVESEHSAMAACIGASAAGARAFT---ATSA---QGLALMHEMLHWAAGA----RLPIVMVDVNRAMA-PPWSVWDDQ-T 121 (390)
T ss_pred EeCCHHHHHHHHHHHHhhCCCeEe---eeCc---ccHHHHhhHHHHHHhc----CCCEEEEEeccCCC-CCCCCcchh-h
Confidence 345899999999999999999766 1111 2223456776544322 345554431 122 233443333 2
Q ss_pred HHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCCCcc------ccCCC----------
Q psy9579 689 ERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEASSTL------MDLAT---------- 750 (887)
Q Consensus 689 Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~s~~------~d~~~---------- 750 (887)
+-++ +-+.||.|++|+|+.++|.+...+.. .+++-||+++.-+.++-|....-.+ +++.+
T Consensus 122 D~~~--~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~ 199 (390)
T PRK08366 122 DSLA--QRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLAD 199 (390)
T ss_pred HHHH--HhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCC
Confidence 4343 34459999999999999999998854 5688999999988776553321111 00000
Q ss_pred ---C-cceee------------cccc----------------c-cccC---------CCCceEEEEEechHHHHHHHHHH
Q psy9579 751 ---G-KFNKI------------INEI----------------D-DIID---------PKKIKRIIACSGKIYYDLFNFRK 788 (887)
Q Consensus 751 ---g-~f~~~------------i~~~----------------~-~~~~---------~~~v~r~i~~~G~~~~~l~~~~~ 788 (887)
+ ++..+ +.+. . ..++ .+|.+.+|||||..+..+.++.+
T Consensus 200 ~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~ 279 (390)
T PRK08366 200 FDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVD 279 (390)
T ss_pred CCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHH
Confidence 0 00000 0000 0 0001 13456799999999888888765
Q ss_pred Hc---CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHH
Q psy9579 789 KK---NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILK 846 (887)
Q Consensus 789 ~~---~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~ 846 (887)
.+ | .++.++++++++|||.+.|.+.+++..+ |+++++. ...|..+-+...+..
T Consensus 280 ~lr~~G-~kvg~l~i~~~~PfP~~~i~~~l~~~k~---ViVvE~n-~~~Gq~g~l~~ev~~ 335 (390)
T PRK08366 280 LLRKEG-YKVGYAKVRWFRPFPKEELYEIAESVKG---IAVLDRN-FSFGQEGILFTEAKG 335 (390)
T ss_pred HHHhcC-CceeeEEEeeecCCCHHHHHHHHhcCCE---EEEEeCC-CCCCcccHHHHHHHH
Confidence 43 4 6899999999999999999999987655 5666544 333443334444433
No 78
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.42 E-value=4.9e-07 Score=90.78 Aligned_cols=111 Identities=11% Similarity=0.009 Sum_probs=78.2
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCC-CCCCEEEEEEeCC-ceeccCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSY-NTGGTIHIIINNQ-IGFTTSP 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~-~lpGvIfiv~NNq-~g~ST~~ 342 (887)
..+|.-.|.|+|++.|.+ .-+|++.|||+| .-. ..| |..+.- | ++| +++||.||+ ||++-..
T Consensus 42 gsmG~~lp~AiGa~~a~~----------~~Vv~i~GDG~f-~m~-~~e-l~t~~~--~~~~~-i~~vV~nN~~~g~~~~~ 105 (157)
T cd02001 42 GSMGLAGSIGLGLALGLS----------RKVIVVDGDGSL-LMN-PGV-LLTAGE--FTPLN-LILVVLDNRAYGSTGGQ 105 (157)
T ss_pred cchhhHHHHHHHHHhcCC----------CcEEEEECchHH-Hhc-ccH-HHHHHH--hcCCC-EEEEEEeCccccccCCc
Confidence 456667899999998752 237899999999 211 122 233333 6 599 888886665 5654321
Q ss_pred CCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 343 NDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 343 ~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
....+..+...+|++||++.+.| .+++++..+.+.|++ .++|+|||+.+
T Consensus 106 ~~~~~~~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~~----~~gp~vi~v~i 154 (157)
T cd02001 106 PTPSSNVNLEAWAAACGYLVLSA--PLLGGLGSEFAGLLA----TTGPTLLHAPI 154 (157)
T ss_pred CCCCCCCCHHHHHHHCCCceEEc--CCHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 11112457888999999999988 579999888888875 47899999986
No 79
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.41 E-value=4.6e-07 Score=108.45 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=82.8
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
+.+|.-.|.|+|++.|.. +.-+|++.|||+| +..++|-.++ .. |++| +++||.||+ ||+...
T Consensus 422 gsmG~~lp~aiGa~lA~p---------~~~vv~i~GDG~f--~~~~~el~Ta-~~--~~lp-i~~vV~NN~~~~~~~~~q 486 (570)
T PRK06725 422 GTMGFGFPAAIGAQLAKE---------EELVICIAGDASF--QMNIQELQTI-AE--NNIP-VKVFIINNKFLGMVRQWQ 486 (570)
T ss_pred ccccchhhHHHhhHhhcC---------CCeEEEEEecchh--hccHHHHHHH-HH--hCCC-eEEEEEECCccHHHHHHH
Confidence 456777999999988842 3458999999999 3556885555 66 9999 999999998 444321
Q ss_pred -------CCC-cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 -------PND-LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 -------~~~-~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
... .....+.+.+|++||+++..| +|++++..+.+.|.+ .++|+|||+.+
T Consensus 487 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v--~~~~~l~~al~~a~~----~~~p~liev~i 544 (570)
T PRK06725 487 EMFYENRLSESKIGSPDFVKVAEAYGVKGLRA--TNSTEAKQVMLEAFA----HEGPVVVDFCV 544 (570)
T ss_pred HHhcCCccccCcCCCCCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 000 111245678999999999999 588887777666654 58999999997
No 80
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.39 E-value=8.3e-07 Score=91.20 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=75.5
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCC-CCCEEEEEEeCC-ceeccCCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYN-TGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~-lpGvIfiv~NNq-~g~ST~~~ 343 (887)
.+|.-.|.|+|++.|. .+ -+|++.|||+| .-+. ..|-.+.- |+ +| +++||.||+ ||+.-...
T Consensus 43 smG~~lpaAiGa~la~--~~--------~Vv~i~GDG~f-~m~~--~el~ta~~--~~~~p-v~~vV~NN~~yg~~~~q~ 106 (181)
T TIGR03846 43 SMGLASSIGLGLALAT--DR--------TVIVIDGDGSL-LMNL--GVLPTIAA--ESPKN-LILVILDNGAYGSTGNQP 106 (181)
T ss_pred ccccHHHHHHHHHHcC--CC--------cEEEEEcchHH-Hhhh--hHHHHHHH--hCCCC-eEEEEEeCCccccccCcC
Confidence 3455578899999886 22 38899999999 5443 33444455 78 59 888888887 67643111
Q ss_pred Ccc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 DLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
... ...+...+|++||++.... ..+++++..+.+ |+ +.++|+|||+.+
T Consensus 107 ~~~~~~~d~~~lA~a~G~~~~~~-v~~~~~l~~al~-a~----~~~~p~li~v~~ 155 (181)
T TIGR03846 107 TPASRRTDLELVAKAAGIRNVEK-VADEEELRDALK-AL----AMKGPTFIHVKV 155 (181)
T ss_pred CCCCCCCCHHHHHHHCCCCeEEE-eCCHHHHHHHHH-HH----cCCCCEEEEEEe
Confidence 111 1346778999999999882 366777766664 43 457899999987
No 81
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.38 E-value=1.7e-06 Score=88.93 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=80.1
Q ss_pred ccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCc-
Q psy9579 267 LEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDL- 345 (887)
Q Consensus 267 le~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~- 345 (887)
+|.-.|.|+|++.|.. +..++++.|||+| +-.++|..+ +.- |++|=+++|+.||.|++.......
T Consensus 52 mG~~l~~aiGaala~~---------~~~vv~i~GDG~f--~~~~~el~t-a~~--~~~p~~ivV~nN~~~~~~~~~~~~~ 117 (183)
T cd02005 52 IGYSVPAALGAALAAP---------DRRVILLVGDGSF--QMTVQELST-MIR--YGLNPIIFLINNDGYTIERAIHGPE 117 (183)
T ss_pred HhhhHHHHHHHHHhCC---------CCeEEEEECCchh--hccHHHHHH-HHH--hCCCCEEEEEECCCcEEEEEeccCC
Confidence 3445778888887642 3468999999999 446788665 555 788856666666677875421111
Q ss_pred -----ccCCcccccccccC----CcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 346 -----RSTLYCTDIGKIIE----APVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 346 -----rss~~~sd~Ak~~g----iP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
........+|++|| +++++| .++++...+.++|++ ..++|+|||+.+.|
T Consensus 118 ~~~~~~~~~d~~~ia~a~G~~~~~~~~~v--~~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 118 ASYNDIANWNYTKLPEVFGGGGGGLSFRV--KTEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred cCcccCCCCCHHHHHHHhCCCccccEEEe--cCHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 01245677999999 688777 578888888887776 25789999999854
No 82
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.37 E-value=1.7e-05 Score=91.34 Aligned_cols=212 Identities=15% Similarity=0.151 Sum_probs=132.4
Q ss_pred chHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCC-CccccCchHHHHH
Q psy9579 614 SEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQ-GPEHSSARLERFL 692 (887)
Q Consensus 614 sE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~-GpeHSs~r~Er~l 692 (887)
||-+.++..+|+|++|-|+++. .= ..|=-.+.|.+...+.+ ..++||..-.+..+. -+-++.+ -. ++
T Consensus 64 ~E~~A~~~~~GAs~aGaRa~Ta---TS---~~Gl~lm~E~l~~aa~~----~~P~V~~~~~R~~~~~~~i~~d~-~D-~~ 131 (407)
T PRK09622 64 SEHAAMSACVGAAAAGGRVATA---TS---SQGLALMVEVLYQASGM----RLPIVLNLVNRALAAPLNVNGDH-SD-MY 131 (407)
T ss_pred cHHHHHHHHHHHHhhCcCEEee---cC---cchHHHHhhHHHHHHHh----hCCEEEEEeccccCCCcCCCchH-HH-HH
Confidence 9999999999999999997661 11 12334556776544322 256666654432211 2223322 11 22
Q ss_pred hhhcCCCcEEEcCCCHhHHHHHHHHHHhC--CC--CCcEEEEcccccccc-CCCCCccc-----cCCCCccee-------
Q psy9579 693 QLCANNNIQIVQPTSASQIFHLLRYQIIR--PI--RKPLIIITPKSLLRK-KEASSTLM-----DLATGKFNK------- 755 (887)
Q Consensus 693 q~~~~~nl~V~~pstpa~~~hlLr~q~~~--~~--r~Plv~~~pK~Llr~-~~~~s~~~-----d~~~g~f~~------- 755 (887)
+ +..-||.|+.|+|+.++|.+...+.+- ++ +-||+++.-..++.| ...+..++ ++. +.|++
T Consensus 132 ~-~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~ 209 (407)
T PRK09622 132 L-SRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFV-GEYQTKNSMLDF 209 (407)
T ss_pred H-HhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhcc-CcccccccccCC
Confidence 2 345699999999999999999998663 45 899999988887544 11111110 000 00000
Q ss_pred --------------------ecccc-------------c----------ccc--CCCCceEEEEEechHHHHHHHHHHHc
Q psy9579 756 --------------------IINEI-------------D----------DII--DPKKIKRIIACSGKIYYDLFNFRKKK 790 (887)
Q Consensus 756 --------------------~i~~~-------------~----------~~~--~~~~v~r~i~~~G~~~~~l~~~~~~~ 790 (887)
-.... . ... ..++-+.+|||+|.++..+.++.+.+
T Consensus 210 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L 289 (407)
T PRK09622 210 DKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEM 289 (407)
T ss_pred CCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHH
Confidence 00000 0 000 01234469999999887777665532
Q ss_pred --CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHH
Q psy9579 791 --NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKE 842 (887)
Q Consensus 791 --~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~ 842 (887)
..+++.||++++++|||.+.|.+.++++.+ |++++|...++|.+..+..
T Consensus 290 ~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~---VvVvE~~~~~Gg~G~l~~e 340 (407)
T PRK09622 290 RKEGIKAGVATIRVLRPFPYERLGQALKNLKA---LAILDRSSPAGAMGALFNE 340 (407)
T ss_pred HhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCE---EEEEeCCCCCCCccHHHHH
Confidence 226899999999999999999999987766 7888887777776654433
No 83
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.37 E-value=4.7e-06 Score=91.83 Aligned_cols=180 Identities=18% Similarity=0.133 Sum_probs=117.1
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC--C
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS--P 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~--~ 342 (887)
+..|...++|.|.++|.+..+. +.-+|++.|||++..-|. .+|.-|.. .+.+ ++|||.||+.=-.|= +
T Consensus 69 ~~fg~~~a~a~Gi~~a~~~~~~-----~~~Vv~~~GDG~~~dIG~--~~L~~a~~--r~~n-i~~ivlDNe~Y~nTGgQ~ 138 (299)
T PRK11865 69 VAFENAAAVASGIERAVKALGK-----KVNVVAIGGDGGTADIGF--QSLSGAME--RGHN-ILYLMYDNEAYMNTGIQR 138 (299)
T ss_pred hhhcchHHHHHHHHHHHHHhcC-----CCeEEEEeCCchHhhccH--HHHHHHHH--cCCC-eEEEEECCccccCCCCCC
Confidence 3457888999999999876543 557999999999977775 77888888 7888 999999998722220 1
Q ss_pred CC--------------------cccCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe--ee
Q psy9579 343 ND--------------------LRSTLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC--FR 399 (887)
Q Consensus 343 ~~--------------------~rss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt--YR 399 (887)
+- .....++..++.++|++.+ .++-.|+..+.+++++|.+ .+||.||++.+ --
T Consensus 139 S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sPC~~ 214 (299)
T PRK11865 139 SGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQPCPT 214 (299)
T ss_pred CCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 10 1112356778889999987 6798999999999999885 58999999875 33
Q ss_pred cCCCCCCCCCCCC--------ChH-hhHH--HhhCCCHH-------HHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHH
Q psy9579 400 KLGHNEQDTPSLT--------QPL-MYKK--IFKHPGIR-------ELYSNKLKIQK---ILTKNESENMIKEFNDMINS 458 (887)
Q Consensus 400 ~~GHne~DdP~~t--------qp~-~Yr~--i~~~~dpi-------~~y~~~Li~~G---i~t~~e~~~i~~~~~~~l~~ 458 (887)
-+||...+-.... =|. .|.. +...++|. .-++++|..+| -+++++++++++.+.++.+.
T Consensus 215 ~~~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v~~~~~~ 294 (299)
T PRK11865 215 GWGFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHLTEEDIEILQKYIDEKWKE 294 (299)
T ss_pred CCCCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcCCHHHHHHHHHHHHHHHHH
Confidence 3443322200000 000 0100 11111222 25667777666 44778877777777666543
No 84
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.34 E-value=1.1e-05 Score=91.72 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=132.7
Q ss_pred chHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcC--ccCcEEEecc--cCCCCCccccCchHH
Q psy9579 614 SEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGR--ISGLTLMLPH--GYEGQGPEHSSARLE 689 (887)
Q Consensus 614 sE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~--~sglv~~lP~--G~~g~GpeHSs~r~E 689 (887)
+|-+.++.++|.|+.|-|+++-- -=+-|+ .+..++- |.. .-++|+..=. |-.++-|..+.+. .
T Consensus 55 ~E~aA~~~a~GAs~aG~Ra~taT--Sg~G~~----lm~E~~~------~a~~~e~P~V~~~~~R~GpstG~p~~~~q~-D 121 (375)
T PRK09627 55 DEISGISVALGASMSGVKSMTAS--SGPGIS----LKAEQIG------LGFIAEIPLVIVNVMRGGPSTGLPTRVAQG-D 121 (375)
T ss_pred CHHHHHHHHHHHHhhCCCEEeec--CCchHH----HHhhHHH------HHHhccCCEEEEEeccCCCcCCCCCccchH-H
Confidence 99999999999999999976611 011111 1122221 222 2367765543 4434445544321 1
Q ss_pred HHHhhh---cCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCCC--c---cc-------cCCC--
Q psy9579 690 RFLQLC---ANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEASS--T---LM-------DLAT-- 750 (887)
Q Consensus 690 r~lq~~---~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~s--~---~~-------d~~~-- 750 (887)
-.+|.- .+-++.|+.|+|+.++|.+...+.+ ..++-|||++.-+.|=.....+. + ++ .|..
T Consensus 122 ~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~ 201 (375)
T PRK09627 122 VNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGDK 201 (375)
T ss_pred HHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCCc
Confidence 122221 1448889999999999999998754 57899999998885521111110 0 00 1110
Q ss_pred Ccceeeccc--------------------------------------------------------cccccCCCCceEEEE
Q psy9579 751 GKFNKIINE--------------------------------------------------------IDDIIDPKKIKRIIA 774 (887)
Q Consensus 751 g~f~~~i~~--------------------------------------------------------~~~~~~~~~v~r~i~ 774 (887)
+.|.+.-.+ .... ..++.+.+||
T Consensus 202 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y-~~~dAd~~IV 280 (375)
T PRK09627 202 KDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEY-MLDDAEILII 280 (375)
T ss_pred ccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceee-CCCCCCEEEE
Confidence 101111000 0000 1134567999
Q ss_pred EechHHHHHHHHHHHcC--CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc--
Q psy9579 775 CSGKIYYDLFNFRKKKN--KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS-- 850 (887)
Q Consensus 775 ~~G~~~~~l~~~~~~~~--~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~-- 850 (887)
|||..+..+.++.+.++ ..+|.++++++++|||.+.|.+.++++.+ |+++++. . +.+..-+...+..
T Consensus 281 ~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~---viVvE~n---~---Gql~~~v~~~~~~~~ 351 (375)
T PRK09627 281 AYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEK---ILVIELN---M---GQYLEEIERVMQRDD 351 (375)
T ss_pred EeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCE---EEEEcCC---h---HHHHHHHHHHhCCCC
Confidence 99999888888766432 26899999999999999999999998765 6777654 3 3344444443332
Q ss_pred -CCcEEEecCCC
Q psy9579 851 -TQKLIYVGRSC 861 (887)
Q Consensus 851 -~~~~~~~gr~~ 861 (887)
..-.+|-||+-
T Consensus 352 ~~~i~~~~G~~~ 363 (375)
T PRK09627 352 FHFLGKANGRPI 363 (375)
T ss_pred ceEEeeeCCCcC
Confidence 22345566665
No 85
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.34 E-value=3.3e-07 Score=90.97 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=80.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST--- 340 (887)
+.+|.-.|.|+|++.|.. +.-+|++.|||+| .-. ..|-.+. .- +++| +++||.||+. |++-
T Consensus 28 g~mG~~~~~aiGa~~a~p---------~~~vv~i~GDG~f-~~~-~~el~ta-~~--~~~~-v~~vv~nN~~~~~~~~~~ 92 (153)
T PF02775_consen 28 GSMGYALPAAIGAALARP---------DRPVVAITGDGSF-LMS-LQELATA-VR--YGLP-VVIVVLNNGGYGMTGGQQ 92 (153)
T ss_dssp T-TTTHHHHHHHHHHHST---------TSEEEEEEEHHHH-HHH-GGGHHHH-HH--TTSS-EEEEEEESSBSHHHHHHH
T ss_pred cccCCHHHhhhHHHhhcC---------cceeEEecCCcce-eec-cchhHHH-hh--ccce-EEEEEEeCCcceEecccc
Confidence 456777899999998722 4579999999999 443 3333333 33 7899 8888887764 3321
Q ss_pred -CCCC-c--------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 341 -SPND-L--------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 341 -~~~~-~--------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
+... . ........+|+++|+++++|+..|++++..+.++|+ +.++|+|||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 93 TPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp HHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred ccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 1111 0 223467789999999999999999999988888887 7799999996
No 86
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.33 E-value=1e-06 Score=90.14 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=76.2
Q ss_pred ccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC---
Q psy9579 267 LEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP--- 342 (887)
Q Consensus 267 le~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~--- 342 (887)
+|.-.|.|+|++.|.. +.-+|++.|||+| .-.. .| |--+.- |++| +++||.||+ ||+....
T Consensus 50 mG~~lp~aiGa~la~~---------~~~vv~i~GDG~f-~m~~-~e-L~ta~~--~~l~-vi~vV~NN~~~g~~~~~~~~ 114 (177)
T cd02010 50 MGVALPGAIGAKLVYP---------DRKVVAVSGDGGF-MMNS-QE-LETAVR--LKIP-LVVLIWNDNGYGLIKWKQEK 114 (177)
T ss_pred hhhHHHHHHHHHHhCC---------CCcEEEEEcchHH-HhHH-HH-HHHHHH--HCCC-eEEEEEECCcchHHHHHHHH
Confidence 4555788888887742 3458899999999 4222 22 222444 8999 777776665 7764310
Q ss_pred ---CCcc---cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 343 ---NDLR---STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 343 ---~~~r---ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.... ...+...+|++||++.++|+ +++++..+.++|++ .++|+|||+.+-+
T Consensus 115 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 115 EYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred hcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0000 12355679999999999995 78888888877764 5789999999843
No 87
>PRK08266 hypothetical protein; Provisional
Probab=98.33 E-value=1.1e-06 Score=104.47 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=84.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
..+|...|.|+|++.|.. +.-+|++.|||+| ..+. ..|..|.- |++| +++||.|| +||+.....
T Consensus 402 GsmG~~lp~aiGa~la~p---------~~~vv~v~GDG~f-~~~~--~eL~ta~~--~~lp-v~ivv~NN~~y~~~~~~~ 466 (542)
T PRK08266 402 GTLGYGFPTALGAKVANP---------DRPVVSITGDGGF-MFGV--QELATAVQ--HNIG-VVTVVFNNNAYGNVRRDQ 466 (542)
T ss_pred cccccHHHHHHHHHHhCC---------CCcEEEEEcchhh-hccH--HHHHHHHH--hCCC-eEEEEEeCCcchHHHHHH
Confidence 345666788888877632 3458999999999 7773 55677777 9999 99988888 588653110
Q ss_pred -----C----c-ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCC
Q psy9579 344 -----D----L-RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGH 403 (887)
Q Consensus 344 -----~----~-rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GH 403 (887)
. . ....+...+|++||+++++|+. ++++..+.+.|+ +.++|+|||+.++|-..+
T Consensus 467 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 467 KRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDS--PEELRAALEAAL----AHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCcEEEEEEecCCCCc
Confidence 0 0 0123567799999999999975 667766666654 467899999999887543
No 88
>PRK06163 hypothetical protein; Provisional
Probab=98.32 E-value=1.3e-06 Score=91.38 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=76.9
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPND 344 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~~ 344 (887)
.+|.-.|.|+|++.|.. +.-+|++.|||+| .-. ..|-..++.. +++| +++||.|| .||+.-....
T Consensus 58 sMG~glpaAiGaalA~p---------~r~Vv~i~GDG~f-~m~-~~eL~Ta~~~--~~lp-i~ivV~NN~~yg~~~~~~~ 123 (202)
T PRK06163 58 SMGLAFPIALGVALAQP---------KRRVIALEGDGSL-LMQ-LGALGTIAAL--APKN-LTIIVMDNGVYQITGGQPT 123 (202)
T ss_pred ccccHHHHHHHHHHhCC---------CCeEEEEEcchHH-HHH-HHHHHHHHHh--cCCC-eEEEEEcCCchhhcCCccC
Confidence 35666888999888752 2347999999998 322 1233333233 4789 88888888 6776432111
Q ss_pred -cccCCcccccccccCCc-EEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 345 -LRSTLYCTDIGKIIEAP-VFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 345 -~rss~~~sd~Ak~~giP-~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.....+...+|+++|++ .++|. +++++..+.+.|++ .++|+|||+.+-
T Consensus 124 ~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~ 173 (202)
T PRK06163 124 LTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRID 173 (202)
T ss_pred CCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 11224667899999998 67775 88888888877763 488999999874
No 89
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=5.2e-05 Score=89.75 Aligned_cols=229 Identities=18% Similarity=0.259 Sum_probs=123.7
Q ss_pred HhhcCCc-EEEecccCCCCcccccceeee-ccccccccccCCCcEEecCC-CccccCCceEEeccccchHHHHHHHHhhc
Q psy9579 550 LVISGYG-VRLSGQDSGRGTFSHRHAILY-NQDYQYSEKETDISTYIPLH-NVSKNQAKFHIINSILSEEAILGFEYGFS 626 (887)
Q Consensus 550 ll~~~~~-vrl~GeDv~rGtFshRHav~~-dq~~~~~~~~~~~~~~~pl~-~l~~~~g~~~V~nspLsE~ailG~~~G~a 626 (887)
+|.-+.+ .||+|-| +|=|-|-.-+. -.++ .|.. +..|-. .++++ -||+. +|||.++.|+.-||+
T Consensus 414 v~k~N~~~fRvf~PD---E~aSNrl~~v~~~tkr-----~~~~-~~~~ed~~lsp~---GRV~e-~LSEh~c~Gwlegy~ 480 (793)
T COG3957 414 VMKLNPDNFRVFGPD---ETASNRLGGVLKVTKR-----VWMA-VTLPEDDFLSPD---GRVME-VLSEHACQGWLEGYL 480 (793)
T ss_pred HHhcCccceEeeCCC---cchhhhhHHHHHHhhh-----hhcc-cccCcccccCCC---ceeeh-hhcHHHHHHHHHHHH
Confidence 3444444 9999999 55555542222 1110 0100 112222 33333 48999 999999999999999
Q ss_pred cCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCc----------cCcEEEe-cccCC--CCCccccCchHHHHHh
Q psy9579 627 TASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRI----------SGLTLML-PHGYE--GQGPEHSSARLERFLQ 693 (887)
Q Consensus 627 ~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~----------sglv~~l-P~G~~--g~GpeHSs~r~Er~lq 693 (887)
++|...|- +-+=-|+ .|+|-.++. .+||..+ +++.+++ -|-++ --|=.|-.-.++.++.
T Consensus 481 LtGr~glf---~sYEaF~----~iv~sm~nQ-h~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~ 552 (793)
T COG3957 481 LTGRHGLF---ASYEAFA----HIVDSMFNQ-HAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVA 552 (793)
T ss_pred hcCCccce---eeHHHHH----HHHHHHHhh-hHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHH
Confidence 99987653 3333454 356666654 5666542 2344444 34332 2244555555665554
Q ss_pred hhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccc----cCCCCcceeeccccccccCCCCc
Q psy9579 694 LCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLM----DLATGKFNKIINEIDDIIDPKKI 769 (887)
Q Consensus 694 ~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~----d~~~g~f~~~i~~~~~~~~~~~v 769 (887)
--.-++++|+.|..+--.-.+.=.+++.. .+=-+|..+|.=.- .-. +.+ -...|- .+...+..- +| +.
T Consensus 553 ~k~~d~vRvyfPpDaNtlLav~d~~l~s~-n~in~iVa~K~p~p--q~~-t~~qA~~~~~~G~--~iwewas~d-~g-ep 624 (793)
T COG3957 553 NKKSDIVRVYFPPDANTLLAVYDHCLRSR-NKINVIVASKQPRP--QWL-TMEQAEKHCTDGA--GIWEWASGD-DG-EP 624 (793)
T ss_pred hhccCceeEecCCCCcchhhhhhHHhhcc-CceEEEEecCCCcc--eee-cHHHHHHHhhcCc--EEEEeccCC-CC-CC
Confidence 33346899999987766666666666543 23334446665221 000 111 112231 122222211 23 33
Q ss_pred eEEEEEechH-HHHHHHHHHH---cC----CCcEEEEeccccCCCC
Q psy9579 770 KRIIACSGKI-YYDLFNFRKK---KN----KNDVVIIRIEQLYPFP 807 (887)
Q Consensus 770 ~r~i~~~G~~-~~~l~~~~~~---~~----~~~v~vi~l~~L~P~~ 807 (887)
+.|+.|.|-+ ....++|... .+ ..=|-|||+..|+|--
T Consensus 625 dvV~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~ 670 (793)
T COG3957 625 DVVMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPH 670 (793)
T ss_pred CEEEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCc
Confidence 5599999994 4555555432 22 2337899999999854
No 90
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.29 E-value=1.3e-06 Score=104.52 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=81.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~~~ 343 (887)
+.+|...|.|+|++.|.. +.-+|++.|||+| . .....|+.|.- |++| +++||.||+. |+.....
T Consensus 437 gsmG~~l~~aiGa~la~~---------~~~vv~i~GDGsf-~--~~~~el~ta~~--~~l~-~~~vv~NN~~~g~~~~~~ 501 (578)
T PRK06112 437 AGLGWGVPMAIGAKVARP---------GAPVICLVGDGGF-A--HVWAELETARR--MGVP-VTIVVLNNGILGFQKHAE 501 (578)
T ss_pred cccccHHHHHHHHHhhCC---------CCcEEEEEcchHH-H--hHHHHHHHHHH--hCCC-eEEEEEeCCccCCEEecc
Confidence 345777888888877642 3469999999999 4 45677888888 9999 9999999973 4322100
Q ss_pred C----c------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 D----L------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ~----~------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. . ........+|++||++++.|+ +++++..+.+.|. +.++|+|||+.+
T Consensus 502 ~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~ 559 (578)
T PRK06112 502 TVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM----AAPGPTLIEVIT 559 (578)
T ss_pred ccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEc
Confidence 0 0 012355779999999999996 5777656555554 468999999998
No 91
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.29 E-value=2e-05 Score=94.25 Aligned_cols=204 Identities=16% Similarity=0.255 Sum_probs=127.3
Q ss_pred cchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc--cCCCCCccccCchHHH
Q psy9579 613 LSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH--GYEGQGPEHSSARLER 690 (887)
Q Consensus 613 LsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~--G~~g~GpeHSs~r~Er 690 (887)
=||-+.++.++|+|+.|-|+++ +.=| .|=-.+.|.+--.+. ..-|+||.+=. |-..+-|.++++ -+.
T Consensus 244 E~E~aA~~~a~GAs~aG~Ra~t---aTSg---~Gl~lm~E~l~~a~~----~~~P~Vi~~~~R~gpstg~~t~~eq-~D~ 312 (562)
T TIGR03710 244 EDEIAAINMAIGASYAGARAMT---ATSG---PGFALMTEALGLAGM----TETPLVIVDVQRGGPSTGLPTKTEQ-SDL 312 (562)
T ss_pred ccHHHHHHHHHhHHhcCCceee---cCCC---CChhHhHHHHhHHHh----ccCCEEEEEcccCCCCCCCCCCccH-HHH
Confidence 4899999999999999999876 1111 111234566522221 12477777532 222222444444 345
Q ss_pred HHhhhc---CCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCCCc-----cccCC-------CCcc
Q psy9579 691 FLQLCA---NNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEASST-----LMDLA-------TGKF 753 (887)
Q Consensus 691 ~lq~~~---~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~s~-----~~d~~-------~g~f 753 (887)
+++.-. +-+|.|+.|+|+.++|.+...+.+ .+++-|||++.-+.|-.+...+.. ++.+. .+.|
T Consensus 313 ~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 392 (562)
T TIGR03710 313 LFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEY 392 (562)
T ss_pred HHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCC
Confidence 554322 346999999999999999998854 568999999998887533222111 11010 0011
Q ss_pred ee-----------ecccc---------------------------------ccc----c--------CCCCceEEEEEec
Q psy9579 754 NK-----------IINEI---------------------------------DDI----I--------DPKKIKRIIACSG 777 (887)
Q Consensus 754 ~~-----------~i~~~---------------------------------~~~----~--------~~~~v~r~i~~~G 777 (887)
++ .++.. ..+ + ..+|.+.+|||||
T Consensus 393 ~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~G 472 (562)
T TIGR03710 393 KRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWG 472 (562)
T ss_pred CCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeC
Confidence 10 01000 000 0 1124557999999
Q ss_pred hHHHHHHHHHHHcC--CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecC
Q psy9579 778 KIYYDLFNFRKKKN--KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDE 830 (887)
Q Consensus 778 ~~~~~l~~~~~~~~--~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe 830 (887)
.++..+.++.+.+. ..+|.++++++++|||.+.|.+.+++..+ |+++++.
T Consensus 473 s~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~---v~VvE~n 524 (562)
T TIGR03710 473 STYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKK---VIVVEQN 524 (562)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCE---EEEEccC
Confidence 99988888776432 26899999999999999999999988765 5666543
No 92
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.27 E-value=1.6e-06 Score=103.60 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=82.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC-
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP- 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~- 342 (887)
+.+|.-.|.|+|++.|.. +.-+|++.|||+| .-. ++| |..|.- |++| +++||.||+ ||+....
T Consensus 419 g~mG~~lpaaiGa~la~~---------~~~vv~i~GDGsf-~~~-~~e-L~ta~~--~~lp-vi~vV~NN~~~g~~~~~q 483 (564)
T PRK08155 419 GTMGFGLPAAIGAALANP---------ERKVLCFSGDGSL-MMN-IQE-MATAAE--NQLD-VKIILMNNEALGLVHQQQ 483 (564)
T ss_pred ccccchhHHHHHHHHhCC---------CCcEEEEEccchh-hcc-HHH-HHHHHH--hCCC-eEEEEEeCCcccccHHHH
Confidence 345667889999888852 3358999999999 664 677 555677 9999 999999998 7764310
Q ss_pred -----C-----CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 343 -----N-----DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 343 -----~-----~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. +.....+...+|++||++++.|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~ 542 (564)
T PRK08155 484 SLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRI 542 (564)
T ss_pred HHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0 00122456779999999999887 57777676666654 57899999998
No 93
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.23 E-value=2.6e-06 Score=102.13 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=82.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST--- 340 (887)
+.+|--.|.|+|++.|.. +.-+|++.|||+| .- ...| |..|.. |++| +++||.||+. |+.-
T Consensus 408 gsmG~~~paAiGa~la~p---------~~~vv~i~GDGsf-~~-~~~e-l~Ta~~--~~lp-v~~vV~NN~~~g~i~~~q 472 (578)
T PRK06546 408 GSMANALPHAIGAQLADP---------GRQVISMSGDGGL-SM-LLGE-LLTVKL--YDLP-VKVVVFNNSTLGMVKLEM 472 (578)
T ss_pred ccccchhHHHHHHHHhCC---------CCcEEEEEcCchH-hh-hHHH-HHHHHH--hCCC-eEEEEEECCccccHHHHH
Confidence 345666888999888752 3469999999999 54 3455 466777 9999 8888888875 6531
Q ss_pred ---C-CCCc--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 ---S-PNDL--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 ---~-~~~~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. .... ....+...+|++||++.++|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 473 ~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~ 529 (578)
T PRK06546 473 LVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVT 529 (578)
T ss_pred HhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0 1111 123456779999999999997 89999888777764 58999999986
No 94
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.22 E-value=2.7e-06 Score=86.72 Aligned_cols=111 Identities=18% Similarity=0.141 Sum_probs=75.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC-C
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-P 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-~ 342 (887)
+.++.-.|.+.|++.|. .+ -+|++.|||+| .-. ..|- --+.- |++| +++||.||+ ||+.-. .
T Consensus 51 g~mG~~l~~aiGa~la~--~~--------~Vv~i~GDGsf-~m~-~~eL-~ta~~--~~l~-v~ivVlNN~~~g~~~~~~ 114 (175)
T cd02009 51 SGIDGTLSTALGIALAT--DK--------PTVLLTGDLSF-LHD-LNGL-LLGKQ--EPLN-LTIVVINNNGGGIFSLLP 114 (175)
T ss_pred cchhhHHHHHHHHHhcC--CC--------CEEEEEehHHH-HHh-HHHH-Hhccc--cCCC-eEEEEEECCCCchheecc
Confidence 34556678999999885 22 27789999999 332 2232 22344 8999 888888887 553211 0
Q ss_pred C--------C--cc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 343 N--------D--LR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 343 ~--------~--~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. . .. +..+...+|++||++.++|+ ++++...+.+.|++ .++|+|||+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 115 QASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred CCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 00 13456679999999999996 78888777777754 58899999975
No 95
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.20 E-value=3.4e-06 Score=100.96 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=80.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| . =.++| |..|.- |++| +++||.||+ ||+-.
T Consensus 424 g~mG~glpaAiGaala~p---------~~~vv~i~GDGsf-~-m~~~e-L~ta~r--~~lp-i~ivV~NN~~~~~i~~~~ 488 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAKP---------DETVVAIVGDGGF-Q-MTLQE-LSVIKE--LSLP-VKVVILNNEALGMVRQWQ 488 (571)
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEEcchHH-h-hhHHH-HHHHHH--hCCC-eEEEEEECchHHHHHHHH
Confidence 456777888888888742 3357999999999 4 35566 777888 9999 888888877 55321
Q ss_pred --------CCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 341 --------SPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 341 --------~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
...+.........+|++||+++++|+. ++++..+.+.| .+.++|+|||+.+-+
T Consensus 489 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~~al~~a----~~~~~p~lieV~vd~ 549 (571)
T PRK07710 489 EEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRIDD--ELEAKEQLQHA----IELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHhCCcceeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 111111234677899999999999965 56655555544 456899999999854
No 96
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.16 E-value=4.3e-06 Score=100.14 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=81.8
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceec-----
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFT----- 339 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~S----- 339 (887)
.+|.-.|.|+|++.|.. +.-+|++.|||+| .... ..|..|.. |++| +++||.||+ |++-
T Consensus 422 ~mG~~lp~aiGa~la~p---------~~~vv~i~GDG~f-~~~~--~eL~ta~~--~~lp-v~~vV~NN~~~~~i~~~q~ 486 (574)
T PRK06882 422 TMGFGLPAAIGVKFAHP---------EATVVCVTGDGSI-QMNI--QELSTAKQ--YDIP-VVIVSLNNRFLGMVKQWQD 486 (574)
T ss_pred cccchhHHHHHHHhhcC---------CCcEEEEEcchhh-hccH--HHHHHHHH--hCCC-eEEEEEECchhHHHHHHHH
Confidence 45666888999888742 2357999999999 7763 66777888 9999 999999998 3321
Q ss_pred ----cC--CCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 340 ----TS--PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 340 ----T~--~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.+ ........+...+|++||+++++|+ +++++..+.+.|++. .++|+|||+.+=|
T Consensus 487 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 487 LIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred HhcCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 11 0010112456779999999999985 577776777777653 3689999999844
No 97
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.13 E-value=4.7e-06 Score=100.24 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=84.7
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. .| |.-|.- |++| +++||.||+ ||+--.
T Consensus 419 G~mG~glpaAiGa~la~p---------~r~Vv~i~GDG~f-~m~~-~e-L~Ta~~--~~lp-v~~vV~NN~~~g~i~~~~ 483 (591)
T PRK11269 419 GPLGWTIPAALGVRAADP---------DRNVVALSGDYDF-QFLI-EE-LAVGAQ--FNLP-YIHVLVNNAYLGLIRQAQ 483 (591)
T ss_pred ccccchhhhHHhhhhhCC---------CCcEEEEEccchh-hcCH-HH-HHHHHH--hCCC-eEEEEEeCCchhHHHHHH
Confidence 356667888999888753 2359999999999 4332 33 334555 9999 999999998 664210
Q ss_pred ------------CCCcc------cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 ------------PNDLR------STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 ------------~~~~r------ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
..... ...+.+.+|++||+++.+| .+++++..|.+.|++...+.++|+|||+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v--~~~~eL~~al~~a~~~~~~~~gp~lieV~v 555 (591)
T PRK11269 484 RAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRV--FKPEDIAPALEQAKALMAEFRVPVVVEVIL 555 (591)
T ss_pred HHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 00000 1245678999999999998 689999999999987766678999999998
No 98
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.11 E-value=3.7e-06 Score=101.00 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=84.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-Cceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST--- 340 (887)
+.+|.-.|.|+|++.|.. +.-+|++.|||+| .-+ ..|-. .|.- |++| +++||.|| .||+..
T Consensus 435 g~mG~glp~aiGa~la~p---------~r~vv~i~GDG~f-~~~-~~el~-Ta~~--~~lp-v~ivV~NN~~y~~~~~~~ 499 (588)
T PRK07525 435 GNCGYAFPAIIGAKIACP---------DRPVVGFAGDGAW-GIS-MNEVM-TAVR--HNWP-VTAVVFRNYQWGAEKKNQ 499 (588)
T ss_pred cccccHHHHHHHHHHhCC---------CCcEEEEEcCchH-hcc-HHHHH-HHHH--hCCC-eEEEEEeCchhHHHHHHH
Confidence 445666888888887742 3358899999999 666 56655 4556 8999 88888776 677421
Q ss_pred ------CCC--CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 341 ------SPN--DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 341 ------~~~--~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
+.. +.....+...+|++||+++++|+ +++++..+.+.|++.. +.++|+|||+.+=|
T Consensus 500 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~ 563 (588)
T PRK07525 500 VDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQ 563 (588)
T ss_pred HHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecc
Confidence 000 00112466779999999999995 8889989999888765 33689999999843
No 99
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=98.11 E-value=7.5e-06 Score=85.60 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=75.8
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC---
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS--- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~--- 341 (887)
.+|.-.|.|+|++.|.. +.-+|++.|||+| .-+. .| |-.|.- |++| +++||.||+ ||+.-.
T Consensus 49 smG~~lpaAiGa~la~p---------~~~vv~i~GDGsf-~m~~-~e-L~Ta~~--~~lp-v~ivV~NN~~~g~~~~~q~ 113 (205)
T cd02003 49 CMGYEIAAGLGAKLAKP---------DREVYVLVGDGSY-LMLH-SE-IVTAVQ--EGLK-IIIVLFDNHGFGCINNLQE 113 (205)
T ss_pred hhhhHHHHHHHHHHhCC---------CCeEEEEEccchh-hccH-HH-HHHHHH--cCCC-CEEEEEECCccHHHHHHHH
Confidence 34555677778777642 3458899999999 5532 33 333555 8999 666666654 665220
Q ss_pred ----CCC-----c-----------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 ----PND-----L-----------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 ----~~~-----~-----------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
... . -...+...+|++||++.++| .|++++..|.+.|+ +.++|+|||+.+=
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v--~~~~el~~al~~a~----~~~gp~lIeV~v~ 184 (205)
T cd02003 114 STGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKV--KTIEELKAALAKAK----ASDRTTVIVIKTD 184 (205)
T ss_pred HhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEE--CCHHHHHHHHHHHH----hCCCCEEEEEEee
Confidence 000 0 01246677999999999999 48999888877775 4588999999983
No 100
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.11 E-value=9.7e-06 Score=96.81 Aligned_cols=113 Identities=16% Similarity=0.080 Sum_probs=78.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc-CC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT-SP 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST-~~ 342 (887)
+.+|.-.|.++|++.|. . +.-+|++.|||+| .-.. ..|..|.. |++| +++||.||+ ||+.- ..
T Consensus 415 g~mG~glpaaiGa~la~----p-----~~~vv~i~GDGsf-~~~~--~el~ta~~--~~l~-i~~vv~nN~~~~~~~~~~ 479 (557)
T PRK08199 415 GSMGYGLPAAIAAKLLF----P-----ERTVVAFAGDGCF-LMNG--QELATAVQ--YGLP-IIVIVVNNGMYGTIRMHQ 479 (557)
T ss_pred ccccchHHHHHHHHHhC----C-----CCcEEEEEcchHh-hccH--HHHHHHHH--hCCC-eEEEEEeCCcchHHHHHH
Confidence 33444466666666553 2 4468999999999 4322 56777888 9999 999999998 67532 10
Q ss_pred CC--------c-ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 343 ND--------L-RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 343 ~~--------~-rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.. . -...+..++|++||+++.+|+ +++++..+.+.|+ +.++|+|||+.+-
T Consensus 480 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~li~v~~~ 538 (557)
T PRK08199 480 EREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL----ASGKPALIEIRID 538 (557)
T ss_pred HHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence 00 0 012466889999999999998 5777766666654 4688999999983
No 101
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.08 E-value=1.8e-05 Score=84.82 Aligned_cols=118 Identities=11% Similarity=-0.010 Sum_probs=77.6
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC---
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN--- 343 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~--- 343 (887)
+.-.|-|+|++.|+--. ...+.-+|++.|||++..-| +.|.++.+ . +++| +++||.||+ ||.+-...
T Consensus 67 G~GlpaAiGA~~a~~~~----~~p~~~Vv~i~GDG~~~~~g-~~~l~ta~-~--~~l~-i~ivVlNN~~yg~~~~q~~~~ 137 (237)
T cd02018 67 ASGLKRGLKARFPKDRE----LDKKKDVVVIGGDGATYDIG-FGALSHSL-F--RGED-ITVIVLDNEVYSNTGGQRSGA 137 (237)
T ss_pred HHHHHHHHHhhcccccc----cCCCCcEEEEeCchHHHhcc-HHHHHHHH-H--cCCC-eEEEEECCccccCCCCCCCCC
Confidence 33467777766552111 11245699999999872123 45555543 3 8999 888888887 46441000
Q ss_pred ---C----------cccCCcccccccccCCcEEE-EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 ---D----------LRSTLYCTDIGKIIEAPVFH-VNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ---~----------~rss~~~sd~Ak~~giP~~~-VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. ..+..+...+|+++|++.+. |+=.+++++..|.+.|++ +.++|+|||+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 138 TPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 0 01224677899999999986 455679999888888874 368899999985
No 102
>PRK06154 hypothetical protein; Provisional
Probab=98.07 E-value=7.5e-06 Score=98.03 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=82.1
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC--
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP-- 342 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~-- 342 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. .| |.-|.- |++| +++||.||+ ||+--..
T Consensus 432 smG~glpaaiGa~la~p---------~r~Vv~i~GDG~f-~m~~-~E-L~Ta~r--~~lp-i~~vV~NN~~yg~~~~~~~ 496 (565)
T PRK06154 432 QLGYGLGLAMGAKLARP---------DALVINLWGDAAF-GMTG-MD-FETAVR--ERIP-ILTILLNNFSMGGYDKVMP 496 (565)
T ss_pred ccccHHHHHHHHHHhCC---------CCcEEEEEcchHH-hccH-HH-HHHHHH--hCCC-eEEEEEECCccceeehhhh
Confidence 45666888888887742 3468999999999 4443 33 555556 9999 999888887 5532210
Q ss_pred -----CC-cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 343 -----ND-LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 343 -----~~-~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
.. .....+...+|++||+++++|+ +++++..+.+.|++..+ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v 554 (565)
T PRK06154 497 VSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVIT 554 (565)
T ss_pred hhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEe
Confidence 00 0012355679999999999997 79999899999887653 36799999987
No 103
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.03 E-value=7.7e-06 Score=97.65 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=80.6
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC----
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS---- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~---- 341 (887)
.+|.-.|.++|++.|.. +.-+|++.|||+| ... +.| |..|.- |++| +++||.||+.--.+.
T Consensus 413 ~mG~~l~aaiGa~la~~---------~~~vv~~~GDG~f-~~~-~~e-L~ta~~--~~l~-~~~vv~NN~~~~~~~~~q~ 477 (558)
T TIGR00118 413 TMGFGLPAAIGAKVAKP---------ESTVICITGDGSF-QMN-LQE-LSTAVQ--YDIP-VKILILNNRYLGMVRQWQE 477 (558)
T ss_pred cccchhhHHHhhhhhCC---------CCcEEEEEcchHH-hcc-HHH-HHHHHH--hCCC-eEEEEEeCCchHHHHHHHH
Confidence 34556788888877741 3458999999999 653 343 555666 9999 999999998533221
Q ss_pred ---CC-----CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 342 ---PN-----DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 342 ---~~-----~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. ......+...+|++||+++++|+. ++++..+.+.|++ .++|+|||+.+-+
T Consensus 478 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 478 LFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred HhcCCceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 00 101124667799999999999887 6778777777764 3789999999853
No 104
>PRK07586 hypothetical protein; Validated
Probab=98.02 E-value=9.6e-06 Score=95.83 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=75.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+||+.|||+| .-. .. .|--|.- |++| +++||.||+ ||+--
T Consensus 385 g~mG~~lpaaiGa~lA~p---------~r~Vv~i~GDGsf-~m~-~~-EL~Ta~~--~~lp-v~ivV~NN~~y~~~~~~~ 449 (514)
T PRK07586 385 GAIGQGLPLATGAAVACP---------DRKVLALQGDGSA-MYT-IQ-ALWTQAR--ENLD-VTTVIFANRAYAILRGEL 449 (514)
T ss_pred cccccHHHHHHHHHHhCC---------CCeEEEEEechHH-HhH-HH-HHHHHHH--cCCC-CEEEEEeCchhHHHHHHH
Confidence 445666788888888752 3458999999999 432 12 2333344 8999 888777776 77421
Q ss_pred ----C--C-------CCcc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 ----S--P-------NDLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 ----~--~-------~~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. + .+.. ...+...+|++||+++++|+ +++++..+.++|+ +.++|+|||+.+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~----~~~~p~liev~~ 514 (514)
T PRK07586 450 ARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAAL----AEPGPHLIEAVV 514 (514)
T ss_pred HHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 0 0 0111 12356779999999999995 6888877777775 347899999863
No 105
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.01 E-value=5.6e-06 Score=99.54 Aligned_cols=116 Identities=18% Similarity=0.243 Sum_probs=82.1
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC-
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP- 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~- 342 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. ..|--|.- |++| +++||.||+ ||+--..
T Consensus 418 gsmG~glpaaiGa~lA~p---------dr~Vv~i~GDG~f-~m~~--~EL~Ta~r--~~lp-vv~iV~NN~~yg~i~~~q 482 (588)
T TIGR01504 418 GPLGWTIPAALGVCAADP---------KRNVVALSGDYDF-QFMI--EELAVGAQ--HNIP-YIHVLVNNAYLGLIRQAQ 482 (588)
T ss_pred ccccchHhHHHhhhhhCC---------CCcEEEEEcchHh-hccH--HHHHHHHH--hCCC-eEEEEEeCCchHHHHHHH
Confidence 345666888888888753 3348899999999 4442 23444555 9999 888888776 7652100
Q ss_pred -------------CCcc------cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 343 -------------NDLR------STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 343 -------------~~~r------ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
.... ...+...+|++||+++.+| ++++++..+.+.|++-..+.++|+|||+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~a~~~~~~~~~p~lIeV~i 554 (588)
T TIGR01504 483 RAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--FKPEEIAPAFEQAKALMAEHRVPVVVEVIL 554 (588)
T ss_pred HHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 0000 0235577999999999999 678898888888887655568999999997
No 106
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.00 E-value=1.5e-05 Score=95.47 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=80.1
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
..+|.-.|.|+|++.|.. +.-+|++.|||+| .-. +.| |..|.- |++| +|+||.||+ ||+--.
T Consensus 414 g~mG~~l~~aiGa~la~p---------~~~vv~i~GDG~f-~m~-~~e-L~Ta~~--~~lp-vi~vV~NN~~~~~i~~~~ 478 (563)
T PRK08527 414 GTMGYGLPAALGAKLAVP---------DKVVINFTGDGSI-LMN-IQE-LMTAVE--YKIP-VINIILNNNFLGMVRQWQ 478 (563)
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEecCchh-ccc-HHH-HHHHHH--hCCC-eEEEEEECCcchhHHHHH
Confidence 345666888888888742 2348999999999 663 466 566677 9999 888888886 343110
Q ss_pred ---------CCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 342 ---------PNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 342 ---------~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
..+.....+...+|+++|+++++|+ +++++-.+.+.|.+ .++|+|||+.+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 479 TFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred HhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 0011112356779999999999985 67777666666653 5789999999976
No 107
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.00 E-value=1.7e-05 Score=86.89 Aligned_cols=112 Identities=17% Similarity=0.078 Sum_probs=76.6
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eecc------
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTT------ 340 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST------ 340 (887)
|.-.|.|+|+.+|.. +.-+|++.|||++ -.--..|+.. |.- +++| +++||.||+. |++-
T Consensus 71 G~alPaAiGaklA~P---------dr~VV~i~GDG~f-~~~g~~el~t-a~r--~nlp-i~iIV~NN~~yGmt~~Q~~~~ 136 (277)
T PRK09628 71 GRAVAYATGIKLANP---------DKHVIVVSGDGDG-LAIGGNHTIH-GCR--RNID-LNFILINNFIYGLTNSQTSPT 136 (277)
T ss_pred ccHHHHHHHHHHHCC---------CCeEEEEECchHH-HHhhHHHHHH-HHH--hCcC-eEEEEEEChHHhcceecccCC
Confidence 555788889888852 3458999999998 3211334433 344 7999 8888888864 6532
Q ss_pred -CCC-------Ccc--cCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 -SPN-------DLR--STLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 -~~~-------~~r--ss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
+.. ... ...+...+|+++|++.+ +..-.+++++..+.+.|++ .+||+|||+.+
T Consensus 137 t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 137 TPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred CCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 100 001 11244788999999986 4555789999888888875 58999999974
No 108
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.99 E-value=0.00033 Score=80.47 Aligned_cols=214 Identities=14% Similarity=0.150 Sum_probs=131.1
Q ss_pred cchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEe--cccCCCCC--ccccCchH
Q psy9579 613 LSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLML--PHGYEGQG--PEHSSARL 688 (887)
Q Consensus 613 LsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~l--P~G~~g~G--peHSs~r~ 688 (887)
=||-+.++..+|+|+.|-|+.+.- = ..|=-.+.+.+...+.+ ..++||.+ |.+..+.+ ++|++.
T Consensus 57 EsE~aA~~~~~GAs~aGaRa~TaT---S---~~Gl~lm~E~l~~aag~----~lP~V~vv~~R~~~~p~~i~~d~~D~-- 124 (394)
T PRK08367 57 ESEHSAISACVGASAAGVRTFTAT---A---SQGLALMHEVLFIAAGM----RLPIVMAIGNRALSAPINIWNDWQDT-- 124 (394)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeee---c---cchHHHHhhHHHHHHHc----cCCEEEEECCCCCCCCCCcCcchHHH--
Confidence 489999999999999999976611 1 12334456665433222 24566655 22221222 266653
Q ss_pred HHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--C--CCCCcEEEEccccccccCCCCCcc---c---cCCCCccee---
Q psy9579 689 ERFLQLCANNNIQIVQPTSASQIFHLLRYQII--R--PIRKPLIIITPKSLLRKKEASSTL---M---DLATGKFNK--- 755 (887)
Q Consensus 689 Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~--~~r~Plv~~~pK~Llr~~~~~s~~---~---d~~~g~f~~--- 755 (887)
+.+.+.||.+++|+|+.++|.+...+.+ . .+.-||+++.-..++.|-...-.+ + ++. +.|++
T Consensus 125 ----~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~-~~~~~~~~ 199 (394)
T PRK08367 125 ----ISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFL-GEYEPKHA 199 (394)
T ss_pred ----HhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhc-Cccccccc
Confidence 3356679999999999999999998865 3 344799999888765442110011 0 110 00100
Q ss_pred ------e-----------------------------cccc----------c--ccc--CCCCceEEEEEechHHHHHHHH
Q psy9579 756 ------I-----------------------------INEI----------D--DII--DPKKIKRIIACSGKIYYDLFNF 786 (887)
Q Consensus 756 ------~-----------------------------i~~~----------~--~~~--~~~~v~r~i~~~G~~~~~l~~~ 786 (887)
+ +.+. . .+. ..+|.+.+|||||..+-.+.++
T Consensus 200 ~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~kea 279 (394)
T PRK08367 200 YLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEF 279 (394)
T ss_pred ccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHH
Confidence 0 0000 0 000 0135566999999998888777
Q ss_pred HHH---cCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhh
Q psy9579 787 RKK---KNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL 848 (887)
Q Consensus 787 ~~~---~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~ 848 (887)
.+. +| .+|-+++++.++|||.+.|.+.++++.+ |+++.-. .+.|+.+-+..-+...+
T Consensus 280 v~~LR~~G-~kVGllri~~~rPFP~~~i~~~l~~~k~---ViVvE~n-~s~g~~g~l~~dV~aal 339 (394)
T PRK08367 280 VDKLREEG-YKVGAAKLTVYRPFPVEEIRALAKKAKV---LAFLEKN-ISFGLGGAVFADASAAL 339 (394)
T ss_pred HHHHHhcC-CcceeEEEeEecCCCHHHHHHHHccCCE---EEEEeCC-CCCCCCCcHHHHHHHHH
Confidence 543 45 5899999999999999999888887665 5666544 34455444444444433
No 109
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=97.99 E-value=2e-05 Score=94.49 Aligned_cols=114 Identities=20% Similarity=0.156 Sum_probs=78.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-. ..| |.-+.- |++| +++||.||+ ||+..
T Consensus 408 gsmG~glpaAiGa~la~p---------~r~Vv~i~GDGsf-~m~-~~e-L~Tavr--~~lp-i~~VV~NN~~yg~i~~~~ 472 (575)
T TIGR02720 408 ATMGVGVPGAIAAKLNYP---------DRQVFNLAGDGAF-SMT-MQD-LLTQVQ--YHLP-VINIVFSNCTYGFIKDEQ 472 (575)
T ss_pred chhhchHHHHHHHHHhCC---------CCcEEEEEcccHH-Hhh-HHH-HHHHHH--hCCC-eEEEEEeCCccHHHHHHH
Confidence 344555666666665531 3468999999999 543 344 455555 9999 777766665 88531
Q ss_pred ---C-CCC--cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 ---S-PND--LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 ---~-~~~--~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. +.. .....+...+|++||+++++| ++++++..+.++|++ . +.++|+|||+.+
T Consensus 473 ~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v--~~~~el~~al~~a~~-~-~~~~p~liev~i 531 (575)
T TIGR02720 473 EDTNQPLIGVDFNDADFAKIAEGVGAVGFRV--NKIEQLPAVFEQAKA-I-KQGKPVLIDAKI 531 (575)
T ss_pred HHhCCCcccccCCCCCHHHHHHHCCCEEEEe--CCHHHHHHHHHHHHh-h-CCCCcEEEEEEe
Confidence 1 000 012245778999999999999 567888888888876 3 458899999987
No 110
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.98 E-value=1e-05 Score=96.54 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=78.3
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPND 344 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~~ 344 (887)
.+|.-.|-|+|++.|.- +.-+|++.|||+| .=- .. -|--|.- |++| +++||.||+ ||+.-.-.+
T Consensus 409 tMG~glPaAIGAkla~P---------~r~Vv~i~GDG~F-~m~-~q-EL~Ta~r--~~lp-v~ivv~nN~~~g~v~~~q~ 473 (550)
T COG0028 409 TMGFGLPAAIGAKLAAP---------DRKVVAIAGDGGF-MMN-GQ-ELETAVR--YGLP-VKIVVLNNGGYGMVRQWQE 473 (550)
T ss_pred cccchHHHHHHHHhhCC---------CCcEEEEEcccHH-hcc-HH-HHHHHHH--hCCC-EEEEEEECCccccchHHHH
Confidence 34555777777777653 3458999999999 211 22 2223334 9999 999998888 666542111
Q ss_pred cccC---------Cc-ccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeec
Q psy9579 345 LRST---------LY-CTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRK 400 (887)
Q Consensus 345 ~rss---------~~-~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~ 400 (887)
.... .. ...+|++||+.+++|+ +++++..+.++|+ +-.+|+|||+.+-+-
T Consensus 474 ~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al----~~~~p~lidv~id~~ 533 (550)
T COG0028 474 LFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL----ASDGPVLIDVVVDPE 533 (550)
T ss_pred HhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 1111 11 6678999999999999 9998877766666 568899999987543
No 111
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=97.98 E-value=3.5e-05 Score=82.51 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=71.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccCCC------Ccc---------------cCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTSPN------DLR---------------STL 349 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~~~------~~r---------------ss~ 349 (887)
+.-+|++.|||++..-| +.| |.-|.- +++| +++||.||+. |++--.. ..+ ...
T Consensus 80 ~r~VV~i~GDG~~~~m~-~~e-L~ta~~--~~~p-v~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 154 (235)
T cd03376 80 DITVVAFAGDGGTADIG-FQA-LSGAAE--RGHD-ILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKK 154 (235)
T ss_pred CCeEEEEEcCchHHhhH-HHH-HHHHHH--cCCC-eEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccC
Confidence 34589999999961222 344 445666 8999 9999999984 6321100 001 224
Q ss_pred cccccccccCCcEEE-EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCC
Q psy9579 350 YCTDIGKIIEAPVFH-VNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN 404 (887)
Q Consensus 350 ~~sd~Ak~~giP~~~-VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHn 404 (887)
+...+|+++|++.+. ++..+++++..+.++|++ ..+|+|||+.+-=.-.|.
T Consensus 155 d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~~~~ 206 (235)
T cd03376 155 DLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPTGWR 206 (235)
T ss_pred CHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCCCCC
Confidence 677799999999884 788999999888888885 478999999753333333
No 112
>PRK07064 hypothetical protein; Provisional
Probab=97.96 E-value=1.9e-05 Score=94.03 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=78.0
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-. ..| |--|.- |++| +++||.||+ ||+-..
T Consensus 405 g~mG~~lpaAiGa~lA~p---------~~~vv~i~GDGsf-~m~-~~e-L~Ta~~--~~lp-v~ivV~NN~~yg~~~~~~ 469 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGP---------GRKTVGLVGDGGL-MLN-LGE-LATAVQ--ENAN-MVIVLMNDGGYGVIRNIQ 469 (544)
T ss_pred CccccccchhhhhhhhCc---------CCcEEEEEcchHh-hhh-HHH-HHHHHH--hCCC-eEEEEEeCChhHHHHHHH
Confidence 456777888999888842 3358999999999 322 222 333445 8999 777777666 665320
Q ss_pred -------CCC-cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 -------PND-LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 -------~~~-~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
... .....+...+|++||++..+|+ +++++..+.+.|++ .++|+|||+.++
T Consensus 470 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 470 DAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred HHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 000 0112456779999999999985 68888888877764 578999999985
No 113
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=97.94 E-value=1.9e-05 Score=94.94 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=76.2
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceec----
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFT---- 339 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~S---- 339 (887)
+.+|.-.|.|+|++.|.. +.-+|++.|||+| .-. .. .|.-|.- |++| +++||.||+ ||+-
T Consensus 430 g~mG~glpaaiGaala~p---------~~~vv~i~GDG~f-~m~-~~-eL~Ta~~--~~l~-~~~vV~NN~~y~~i~~~q 494 (585)
T CHL00099 430 GTMGYGLPAAIGAQIAHP---------NELVICISGDASF-QMN-LQ-ELGTIAQ--YNLP-IKIIIINNKWQGMVRQWQ 494 (585)
T ss_pred cchhhhHHHHHHHHHhCC---------CCeEEEEEcchhh-hhh-HH-HHHHHHH--hCCC-eEEEEEECCcchHHHHHH
Confidence 455666888899888853 2358899999999 211 11 2223345 9999 999999998 2321
Q ss_pred -----cC--CCCcc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 340 -----TS--PNDLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 340 -----T~--~~~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
-. ..+.. ...+...+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v 554 (585)
T CHL00099 495 QAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQV 554 (585)
T ss_pred HHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 00 00000 12456779999999999995 47777777666664 57899999998
No 114
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=97.92 E-value=2.1e-05 Score=94.22 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC---
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS--- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~--- 341 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .-. +.| |-.|.- |++| +++||.||+ ||+.-.
T Consensus 409 ~mG~~lpaAiGa~la~p---------~r~vv~i~GDGsf-~m~-~~e-L~Ta~~--~~lp-v~ivV~NN~~~g~i~~~~~ 473 (574)
T PRK09124 409 SMANAMPQALGAQAAHP---------GRQVVALSGDGGF-SML-MGD-FLSLVQ--LKLP-VKIVVFNNSVLGFVAMEMK 473 (574)
T ss_pred cccchHHHHHHHHHhCC---------CCeEEEEecCcHH-hcc-HHH-HHHHHH--hCCC-eEEEEEeCCccccHHHHHH
Confidence 44666788888887752 2347899999999 332 344 334555 8999 777777776 776410
Q ss_pred ---C-CCcc--cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 ---P-NDLR--STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 ---~-~~~r--ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. .... ...+...+|++||+++++|+ +++++..+.+.|++ -++|+|||+.+
T Consensus 474 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i 529 (574)
T PRK09124 474 AGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVT 529 (574)
T ss_pred hcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0 0001 12356779999999999995 68888777777763 47899999987
No 115
>PRK12474 hypothetical protein; Provisional
Probab=97.92 E-value=2.4e-05 Score=92.77 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=77.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. .| |--|.- |++| +++||.||+ ||+--.
T Consensus 389 gsmG~glpaAiGa~lA~p---------~r~vv~i~GDG~f-~m~~-qE-L~Ta~r--~~lp-v~iiV~NN~~y~~i~~~~ 453 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAAP---------DRKVVCPQGDGGA-AYTM-QA-LWTMAR--ENLD-VTVVIFANRSYAILNGEL 453 (518)
T ss_pred CccCccHHHHHHHHHHCC---------CCcEEEEEcCchh-cchH-HH-HHHHHH--HCCC-cEEEEEcCCcchHHHHHH
Confidence 556767888999888852 2347899999999 4332 33 333344 8999 998888888 775320
Q ss_pred -------CC-------Ccc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 -------PN-------DLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 -------~~-------~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
.. +.. ...+.+.+|++||+++++|+- ++++..+.+.|+ +.++|+|||+.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~~--~~eL~~al~~a~----~~~~p~liev~~ 518 (518)
T PRK12474 454 QRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRATT--AEEFSAQYAAAM----AQRGPRLIEAMI 518 (518)
T ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeCC--HHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 00 000 012456799999999999965 788877777775 358899999863
No 116
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=97.86 E-value=2.5e-05 Score=86.41 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=81.6
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccCC----
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTSP---- 342 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~~---- 342 (887)
|-..|.|+|+++|.. +.-+|++.|||++.+-| ..|-.. |.- +++| +++||.||+. |.+.-.
T Consensus 73 G~alpaAiGaklA~p---------d~~VV~i~GDG~~~~mg-~~eL~t-A~r--~nl~-i~vIV~NN~~YG~t~gQ~s~t 138 (301)
T PRK05778 73 GRAIAFATGAKLANP---------DLEVIVVGGDGDLASIG-GGHFIH-AGR--RNID-ITVIVENNGIYGLTKGQASPT 138 (301)
T ss_pred ccHHHHHHHHHHHCC---------CCcEEEEeCccHHHhcc-HHHHHH-HHH--HCCC-cEEEEEeCchhhcccCcccCC
Confidence 666889999988853 33478999999973344 233333 445 8999 8888888874 654311
Q ss_pred --CCcc----------cCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe--eecCCCCC
Q psy9579 343 --NDLR----------STLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC--FRKLGHNE 405 (887)
Q Consensus 343 --~~~r----------ss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt--YR~~GHne 405 (887)
...+ ...+...+|+++|++.+ ++...++.++..+.+.|++ .++|+|||+.+ --.+|.+.
T Consensus 139 ~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~~~ 212 (301)
T PRK05778 139 TPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGRNT 212 (301)
T ss_pred cCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCcCC
Confidence 0000 12356679999999986 5677899999888888874 58899999653 33344444
No 117
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.85 E-value=3.2e-05 Score=87.69 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=76.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~~~ 343 (887)
+.+|.-.|.|+|++.|... .-+||+.||||+ .-. . ..|-.+.- ++++.++|||.||+. +.+....
T Consensus 221 GsMG~a~p~AlG~ala~p~---------r~Vv~i~GDGsf-lm~-~-~eL~t~~~--~~~~nli~VVlNNg~~~~~g~q~ 286 (361)
T TIGR03297 221 GSMGHASQIALGLALARPD---------QRVVCLDGDGAA-LMH-M-GGLATIGT--QGPANLIHVLFNNGAHDSVGGQP 286 (361)
T ss_pred chhhhHHHHHHHHHHHCCC---------CCEEEEEChHHH-HHH-H-HHHHHHHH--hCCCCeEEEEEcCccccccCCcC
Confidence 5667778999999988542 248999999999 211 1 12333344 776339999999985 4322111
Q ss_pred CcccCCcccccccccCCc-EEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 DLRSTLYCTDIGKIIEAP-VFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ~~rss~~~sd~Ak~~giP-~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
......+...+|+++|.. +++| ++++++..+.+.|. +..+|+|||+.+
T Consensus 287 ~~~~~~d~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~----~~~gp~lIeV~v 335 (361)
T TIGR03297 287 TVSQHLDFAQIAKACGYAKVYEV--STLEELETALTAAS----SANGPRLIEVKV 335 (361)
T ss_pred CCCCCCCHHHHHHHCCCceEEEe--CCHHHHHHHHHHHH----hCCCcEEEEEEe
Confidence 111235678899999974 5554 78999988888875 347899999997
No 118
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=97.85 E-value=4e-05 Score=79.53 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=76.5
Q ss_pred ccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCCC-
Q psy9579 267 LEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPND- 344 (887)
Q Consensus 267 le~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~~- 344 (887)
+|.-.|.|+|+++|.. +.-+|++.|||++-.-+ +.|-.+ |.. |++| +++||.||+ ||.+.....
T Consensus 53 mG~glpaAiGa~la~p---------~r~Vv~i~GDGs~f~m~-~~eL~t-a~~--~~lp-v~iiVlnN~~yg~~~~~~~~ 118 (193)
T cd03375 53 HGRALAVATGVKLANP---------DLTVIVVSGDGDLAAIG-GNHFIH-AAR--RNID-ITVIVHNNQIYGLTKGQASP 118 (193)
T ss_pred hccHHHHHHHHHHhCC---------CCeEEEEeccchHhhcc-HHHHHH-HHH--hCCC-eEEEEEcCcccccCCCccCC
Confidence 4666788888887742 34589999999951222 334333 334 8999 888877775 465431110
Q ss_pred c---------------ccCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 345 L---------------RSTLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 345 ~---------------rss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. ....+...+|+++|++.+ ++.-.+++++..+.++|++ .++|+|||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 119 TTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred CCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 0 011356779999999986 3466789999888888875 48899999973
No 119
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.83 E-value=3e-05 Score=92.96 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=80.2
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
+.+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. -.|--|.- |++| +++||.||+ ||+-.
T Consensus 421 g~mG~glpaaiGa~la~p---------~~~vv~i~GDG~f-~m~~--~eL~Ta~r--~~l~-v~ivV~NN~~yg~i~~~q 485 (574)
T PRK07979 421 GTMGFGLPAALGVKMALP---------EETVVCVTGDGSI-QMNI--QELSTALQ--YELP-VLVLNLNNRYLGMVKQWQ 485 (574)
T ss_pred cchhhHHHHHHHHHHhCC---------CCeEEEEEcchhh-hccH--HHHHHHHH--hCCC-eEEEEEeCchhhHHHHHH
Confidence 345666888888888742 2357899999999 3331 23344555 9999 888887776 55311
Q ss_pred ------CCCCc--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 341 ------SPNDL--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 341 ------~~~~~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
..... ....+...+|++||+++++| ++++++-.+.+.|++..+. ++|+|||+.+=
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v--~~~~eL~~al~~a~~~~~~-~~p~lIeV~i~ 548 (574)
T PRK07979 486 DMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQI--SHPDELESKLSEALEQVRN-NRLVFVDVTVD 548 (574)
T ss_pred HHhcCCccccccCCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHhccCC-CCcEEEEEEEC
Confidence 11100 01245677999999999998 6788888888888875433 68999999983
No 120
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.81 E-value=3.3e-05 Score=93.51 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=77.0
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| . =...| |--|.- |++| +++||.||+ ||+-..
T Consensus 434 g~mG~glpaAiGA~lA~p---------~r~Vv~i~GDG~f-~-m~~~e-L~Ta~r--~~lp-vi~vV~NN~~~g~i~~~q 498 (616)
T PRK07418 434 GTMGFGMPAAMGVKVALP---------DEEVICIAGDASF-L-MNIQE-LGTLAQ--YGIN-VKTVIINNGWQGMVRQWQ 498 (616)
T ss_pred cccccHHHHHHHHHHhCC---------CCcEEEEEcchHh-h-hhHHH-HHHHHH--hCCC-eEEEEEECCcchHHHHHH
Confidence 445666777888777642 3347899999999 2 22344 333445 8999 888888876 454221
Q ss_pred -------CCCc---ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 -------PNDL---RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 -------~~~~---rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.... ....+...+|+++|+++++|+ +++++..+.+.|++ .++|+|||+.+.
T Consensus 499 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~ 559 (616)
T PRK07418 499 ESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVR 559 (616)
T ss_pred HHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0000 012456779999999999996 78888777777764 578999999984
No 121
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=97.78 E-value=5.7e-05 Score=91.09 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=79.0
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCC----CCCCEEEEEEeCC-ceec
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSY----NTGGTIHIIINNQ-IGFT 339 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~----~lpGvIfiv~NNq-~g~S 339 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-....|-..++.. | ++| +++||.||+ ||+-
T Consensus 415 g~mG~glpaaiGa~la~p---------~~~Vv~i~GDG~f-~m~~~~EL~Ta~r~--~~~~~~lp-viivV~NN~~~~~i 481 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAHP---------DRPVIALVGDGAM-QMNGMAELITVAKY--WRQWSDPR-LIVLVLNNRDLNQV 481 (597)
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEEcchhH-hccchHHHHHHHHH--hhcccCCC-EEEEEEeCCcchHH
Confidence 345666888888888752 2347999999999 43323455544444 3 899 999999996 5432
Q ss_pred c---------CC--CCc-ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 340 T---------SP--NDL-RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 340 T---------~~--~~~-rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
. +. ... ....+...+|++||++.++|. +++++..+.+.|++ .++|+|||+.+-
T Consensus 482 ~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 546 (597)
T PRK08273 482 TWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTD 546 (597)
T ss_pred HHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 1 00 000 012346779999999999887 57777777777764 488999999983
No 122
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.77 E-value=4.4e-05 Score=92.03 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=80.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
+.+|.-.|-++|++.|.. +.-+|++.|||+| .-.. .| |--|.- |++| +++||.||+ ||+-.
T Consensus 430 gsmG~glpaaiGa~lA~p---------~r~Vv~i~GDG~f-~m~~-~E-L~Ta~r--~~lp-vi~vV~NN~~y~~i~~~q 494 (595)
T PRK09107 430 GTMGYGLPAALGVQIAHP---------DALVIDIAGDASI-QMCI-QE-MSTAVQ--YNLP-VKIFILNNQYMGMVRQWQ 494 (595)
T ss_pred hhhhhhHHHHHHHHHhCC---------CCeEEEEEcCchh-hccH-HH-HHHHHH--hCCC-eEEEEEeCCccHHHHHHH
Confidence 445666888888888742 3458899999999 3332 33 444455 9999 888888887 55311
Q ss_pred ------CCCCc--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 341 ------SPNDL--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 341 ------~~~~~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
..... .+..+...+|++||+++++| ++++++-.+.+.|.+ -++|+|||+.+-+
T Consensus 495 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 495 QLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRC--EKPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHhCCccccccCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 00100 01245677999999999999 678888777777764 4789999999854
No 123
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=97.76 E-value=5.7e-05 Score=90.70 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=79.4
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
+.+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. .| |--|.- |++| +++||.||+ ||+-.
T Consensus 430 g~mG~~lpaaiGa~la~p---------~~~Vv~i~GDG~f-~m~~-~e-L~Tavr--~~lp-vi~vV~NN~~yg~i~~~~ 494 (579)
T TIGR03457 430 GNCGYAFPTIIGAKIAAP---------DRPVVAYAGDGAW-GMSM-NE-IMTAVR--HDIP-VTAVVFRNRQWGAEKKNQ 494 (579)
T ss_pred ccccchHHHHHhhhhhCC---------CCcEEEEEcchHH-hccH-HH-HHHHHH--hCCC-eEEEEEECcchHHHHHHH
Confidence 345666788888887742 3357899999999 4332 22 233334 8999 777777665 77532
Q ss_pred ----CC--CCc-ccC-CcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 341 ----SP--NDL-RST-LYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 341 ----~~--~~~-rss-~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.. ... ... .+...+|++||+++++| ++++++..+.+.|++.. +.++|+|||+.+=
T Consensus 495 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v--~~~~el~~al~~a~~~~-~~~~p~lieV~v~ 557 (579)
T TIGR03457 495 VDFYNNRFVGTELESELSFAGIADAMGAKGVVV--DKPEDVGPALKKAIAAQ-AEGKTTVIEIVCT 557 (579)
T ss_pred HHhhCCcceeccCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhhC-CCCCcEEEEEEeC
Confidence 00 000 111 35677999999999988 67999999999988754 3478999999983
No 124
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.74 E-value=5.8e-05 Score=82.70 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred ccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc-----
Q psy9579 267 LEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT----- 340 (887)
Q Consensus 267 le~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST----- 340 (887)
+|...|.|+|+..|.. +.-+|++.|||++..-| +.| |--|.- +++| +++||.||+ ||+|.
T Consensus 62 mG~alp~AiGaklA~p---------d~~VVai~GDG~~~~iG-~~e-L~tA~r--~nl~-i~~IV~NN~~Yg~t~~Q~s~ 127 (280)
T PRK11869 62 HGRAIPAATAVKATNP---------ELTVIAEGGDGDMYAEG-GNH-LIHAIR--RNPD-ITVLVHNNQVYGLTKGQASP 127 (280)
T ss_pred cccHHHHHHHHHHHCC---------CCcEEEEECchHHhhCc-HHH-HHHHHH--hCcC-cEEEEEECHHHhhhcceecC
Confidence 3667888999877732 33589999999983222 333 333444 8999 999999887 46542
Q ss_pred --CCC-C--------cccCCcccccccccCCcEEE-EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 --SPN-D--------LRSTLYCTDIGKIIEAPVFH-VNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 --~~~-~--------~rss~~~sd~Ak~~giP~~~-VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
+.. . .....+...+|+++|++.+. .+-.+++++..+.+.|++ .++|.|||+.+
T Consensus 128 ~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 128 TTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred CCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 110 0 01123566799999999876 347899999888888884 58899999974
No 125
>PLN02470 acetolactate synthase
Probab=97.73 E-value=0.0001 Score=88.74 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=76.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. -.|--|.- |++| +++||.||+ ||+--
T Consensus 426 g~mG~glpaaiGa~la~p---------~~~Vv~i~GDG~f-~m~~--~eL~Ta~~--~~l~-v~ivV~NN~~yg~i~~~~ 490 (585)
T PLN02470 426 GAMGFGLPAAIGAAAANP---------DAIVVDIDGDGSF-IMNI--QELATIHV--ENLP-VKIMVLNNQHLGMVVQWE 490 (585)
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEEccchh-hccH--HHHHHHHH--hCCC-eEEEEEeCCcchHHHHHH
Confidence 345666888888887752 2347899999999 4332 22333344 8999 888888886 34310
Q ss_pred ------CCCCcc---------cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 341 ------SPNDLR---------STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 341 ------~~~~~r---------ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
+..... ...+...+|++||+++.+| ++++++..+.+.|.+ -++|+|||+.+=
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lieV~i~ 557 (585)
T PLN02470 491 DRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV--TRKSDLREAIQKMLD----TPGPYLLDVIVP 557 (585)
T ss_pred HHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 000000 0145677999999999998 568888888887765 478999999983
No 126
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.71 E-value=7.5e-05 Score=89.91 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-cee------
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGF------ 338 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~------ 338 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. -.|.-|.- |++| +++||.||+ ||+
T Consensus 438 smG~glpaaiGa~lA~p---------~r~Vv~i~GDGsf-~m~~--~eL~Ta~r--~~lp-viivV~NN~~~~~i~~~q~ 502 (587)
T PRK06965 438 TMGVGLPYAMGIKMAHP---------DDDVVCITGEGSI-QMCI--QELSTCLQ--YDTP-VKIISLNNRYLGMVRQWQE 502 (587)
T ss_pred cccchHHHHHHHHHhCC---------CCcEEEEEcchhh-hcCH--HHHHHHHH--cCCC-eEEEEEECCcchHHHHHHH
Confidence 45666788888888752 3358899999999 3332 22333344 8999 888888887 332
Q ss_pred ---ccCCCCc--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 339 ---TTSPNDL--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 339 ---ST~~~~~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
..+.... ....+...+|++||+++++| .+++++-.+.+.|++. -++|+|||+.+
T Consensus 503 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v--~~~~eL~~al~~a~~~---~~~p~lieV~i 561 (587)
T PRK06965 503 IEYSKRYSHSYMDALPDFVKLAEAYGHVGMRI--EKTSDVEPALREALRL---KDRTVFLDFQT 561 (587)
T ss_pred HhcCCCccccCCCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHhc---CCCcEEEEEEe
Confidence 1111110 01245677999999999998 5688888888888763 25799999997
No 127
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.70 E-value=6.6e-05 Score=90.12 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=77.3
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc----
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT---- 340 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST---- 340 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. -.|.-|.- |++| +++||.||+ ||+--
T Consensus 424 smG~glpaAiGa~la~p---------~r~Vv~i~GDG~f-~m~~--~eL~Ta~r--~~lp-v~ivV~NN~~y~~i~~~q~ 488 (574)
T PRK06466 424 TMGFGLPAAMGVKLAFP---------DQDVACVTGEGSI-QMNI--QELSTCLQ--YGLP-VKIINLNNGALGMVRQWQD 488 (574)
T ss_pred hhhchHHHHHHHHHhCC---------CCeEEEEEcchhh-hccH--HHHHHHHH--hCCC-eEEEEEeCCccHHHHHHHH
Confidence 45666888888888752 2347999999999 3332 22333555 9999 888888886 55321
Q ss_pred -----CCCCc--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 341 -----SPNDL--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 341 -----~~~~~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
+.... ....+...+|++||++++.| .+++++..+.+.|++. -++|+|||+.+=
T Consensus 489 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~~~---~~~p~lIev~i~ 548 (574)
T PRK06466 489 MQYEGRHSHSYMESLPDFVKLAEAYGHVGIRI--TDLKDLKPKLEEAFAM---KDRLVFIDIYVD 548 (574)
T ss_pred HhcCCceeecCCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhc---CCCcEEEEEEeC
Confidence 00000 01235667899999999998 5788888888877753 278999999984
No 128
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=97.68 E-value=4.8e-05 Score=91.07 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=74.5
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceec-cCC-
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFT-TSP- 342 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~S-T~~- 342 (887)
.++--.|-|+|++.| . . + -+|++.|||+| .... .| |--+.- |++| +++||.||+ ||+. .-.
T Consensus 426 ~~G~~lpaaiGaala-~--~------~-~vv~i~GDGsf-~~~~-~e-L~Ta~r--~~l~-i~ivVlNN~g~~~~~~~~~ 489 (568)
T PRK07449 426 GIDGLLSTAAGVARA-S--A------K-PTVALIGDLSF-LHDL-NG-LLLLKQ--VPAP-LTIVVVNNNGGGIFSLLPQ 489 (568)
T ss_pred chhhHHHHHHHHHhc-C--C------C-CEEEEechHHh-hcCc-HH-HHhhcc--cCCC-eEEEEEECCCCccccCCCC
Confidence 345557888888877 2 1 1 26899999999 5432 23 222445 8999 999999888 5532 100
Q ss_pred -CC---------cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 343 -ND---------LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 343 -~~---------~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
.+ .-...+...+|++||++++.| ++++++..+.+.|+ +.++|+|||+.+
T Consensus 490 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V--~~~~eL~~al~~a~----~~~~p~lIev~i 548 (568)
T PRK07449 490 PEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRP--ETWAELEEALADAL----PTPGLTVIEVKT 548 (568)
T ss_pred CCCcchhhHhhcCCCCCCHHHHHHHcCCCccCC--CCHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 00 011235667999999999887 56888878877775 347899999986
No 129
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=97.66 E-value=6.3e-05 Score=89.51 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=76.5
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC---
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS--- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~--- 341 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .- ...| |--+.- |++| +++||.||. ||+--.
T Consensus 409 ~mG~~lpaaiGa~la~~---------~~~vv~i~GDGsf-~m-~~~e-L~Ta~~--~~lp-i~ivV~NN~~y~~~~~~~~ 473 (539)
T TIGR02418 409 TLGVALPWAIGAALVRP---------NTKVVSVSGDGGF-LF-SSME-LETAVR--LKLN-IVHIIWNDNGYNMVEFQEE 473 (539)
T ss_pred ccccHHHHHHHHHHhCC---------CCcEEEEEcchhh-hc-hHHH-HHHHHH--hCCC-eEEEEEECCcchHHHHHHH
Confidence 45666888888887753 2348899999999 33 3455 333556 9999 888777775 554210
Q ss_pred --CCC--c--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 --PND--L--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 --~~~--~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
... . ....+...+|++||++.++|+ +++++..+.+.|. +.++|++||+.+-
T Consensus 474 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~v~ 530 (539)
T TIGR02418 474 MKYQRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAM----EVEGPVVVDIPVD 530 (539)
T ss_pred HhcCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 000 0 013456779999999999886 4777767777665 3578999999983
No 130
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.65 E-value=0.003 Score=74.88 Aligned_cols=240 Identities=18% Similarity=0.233 Sum_probs=158.3
Q ss_pred eEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccC
Q psy9579 606 FHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSS 685 (887)
Q Consensus 606 ~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs 685 (887)
.-++-=.++|.-.+-.++|.|+.|-+.++ =+- .==.|.| .|-|++.+ .-+..-|||+++---+ | .|||
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~--~mK-hVGlNvA---sDpl~s~a--y~Gv~GGlviv~aDDp---g-~~SS 125 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALV--TMK-HVGLNVA---SDPLMSLA--YAGVTGGLVIVVADDP---G-MHSS 125 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeE--Eec-ccccccc---hhhhhhhh--hcCccccEEEEEccCC---C-cccc
Confidence 35667788999999999999999998754 222 1113554 89998774 2234557888864211 1 3666
Q ss_pred ch---HHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHH--hCCCCCcEEEEccccccccC----------CCCCccc-cCC
Q psy9579 686 AR---LERFLQLCANNNIQIVQPTSASQIFHLLRYQI--IRPIRKPLIIITPKSLLRKK----------EASSTLM-DLA 749 (887)
Q Consensus 686 ~r---~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~--~~~~r~Plv~~~pK~Llr~~----------~~~s~~~-d~~ 749 (887)
+. -+.|.+ .+ ++-|+.|++|..++.+.+.+. .+.++-|||+=+-..+-... ..+++.. .|.
T Consensus 126 qneqdsr~y~~-~a--~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~ 202 (640)
T COG4231 126 QNEQDSRAYGK-FA--LIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFI 202 (640)
T ss_pred cchhHhHHHHH-hc--CceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCcccccccc
Confidence 52 234444 44 899999999999999999984 57788999986654433111 1111211 221
Q ss_pred --CCcceeecccc-cc-----------------------ccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEecccc
Q psy9579 750 --TGKFNKIINEI-DD-----------------------IIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQL 803 (887)
Q Consensus 750 --~g~f~~~i~~~-~~-----------------------~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L 803 (887)
.+++..+=..+ .. +..+.+-+.-|+|+|..|-.+.+|-+.+|. +..|.+|-.-
T Consensus 203 k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~lgl-~~~~lklg~~ 281 (640)
T COG4231 203 KDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDLGL-DDELLKLGTP 281 (640)
T ss_pred CCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHcCC-CceeEEecCC
Confidence 12222211111 00 111223333499999999999999988885 6679999999
Q ss_pred CCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhc-cCCcEEEecCCCCCCCCCCch
Q psy9579 804 YPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLN-STQKLIYVGRSCSASPASGYY 870 (887)
Q Consensus 804 ~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~-~~~~~~~~gr~~~~~~a~g~~ 870 (887)
+|||.+.|.+-++.-.+ +++|+|-- .+|...+.+.+. ...++.+.|-+..--|..|-.
T Consensus 282 ~Plp~~~i~~F~~g~~~---vlVVEE~~------P~iE~qv~~~l~~~g~~v~v~GKd~gllP~~GEl 340 (640)
T COG4231 282 YPLPEQLIENFLKGLER---VLVVEEGE------PFIEEQVKALLYDAGLPVEVHGKDEGLLPMEGEL 340 (640)
T ss_pred cCCCHHHHHHHHhcCcE---EEEEecCC------chHHHHHHHHHHhcCCceEeecccccccCccccc
Confidence 99999999999987655 78887742 378888877754 457788888887656666633
No 131
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=97.64 E-value=0.00015 Score=86.64 Aligned_cols=111 Identities=23% Similarity=0.186 Sum_probs=76.8
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceec----
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFT---- 339 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~S---- 339 (887)
..+|.-.|-++|++.|. +.-+|++.|||+| .-.. .| |--|.- |++| +++||.||+ |-..
T Consensus 417 gsmG~~lpaaiGaala~----------~~~vv~i~GDGsf-~m~~-~E-L~Ta~r--~~l~-v~~vV~NN~~~~~~~~~~ 480 (554)
T TIGR03254 417 GVMGIGMGYAIAAAVET----------GKPVVALEGDSAF-GFSG-ME-VETICR--YNLP-VCVVIFNNGGIYRGDDVN 480 (554)
T ss_pred CcCCchHHHHHHHHhcC----------CCcEEEEEcCchh-cccH-HH-HHHHHH--cCCC-EEEEEEeChhhhhhhhhh
Confidence 34566688888888872 1238899999999 4442 44 334445 9999 999999997 3111
Q ss_pred --c-CC--CCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 340 --T-SP--NDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 340 --T-~~--~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. .. .+-........+|++||+++++| .+++++..+.++|++ .++|+|||+++
T Consensus 481 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIev~i 537 (554)
T TIGR03254 481 VVGADPAPTVLVHGARYDKMMKAFGGVGYNV--TTPDELKAALNEALA----SGKPTLINAVI 537 (554)
T ss_pred hcCCCCCccccCCCCCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 0 00 01001234567999999999999 678888888877763 47899999987
No 132
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=97.63 E-value=8.5e-05 Score=89.41 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=75.1
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC---
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS--- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~--- 341 (887)
.+|.-.|.|+|++.|.. +.-+|++.|||+| .=. ..| |--|.- |++| +++||.||+ ||+...
T Consensus 420 smG~~lpaaiGa~la~p---------~~~Vv~i~GDGsf-~m~-~~e-L~Ta~~--~~lp-v~~vV~NN~~~g~~~~~~~ 484 (586)
T PRK06276 420 TMGFGFPAAIGAKVAKP---------DANVIAITGDGGF-LMN-SQE-LATIAE--YDIP-VVICIFDNRTLGMVYQWQN 484 (586)
T ss_pred ccccchhHHHhhhhhcC---------CCcEEEEEcchHh-hcc-HHH-HHHHHH--hCCC-eEEEEEeCCchHHHHHHHH
Confidence 45666788888887742 2347899999999 322 233 222333 8999 888888887 554320
Q ss_pred ------CCCcc--cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 ------PNDLR--STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 ------~~~~r--ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
..... ...+...+|+++|+.++.| .+++++..+.++|++ .++|+|||+.+
T Consensus 485 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIeV~i 542 (586)
T PRK06276 485 LYYGKRQSEVHLGETPDFVKLAESYGVKADRV--EKPDEIKEALKEAIK----SGEPYLLDIII 542 (586)
T ss_pred HHhCCCcccccCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 00010 1235667999999999888 568888777777763 47899999997
No 133
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=97.61 E-value=0.0002 Score=85.85 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=77.1
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCcee--ccC--
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGF--TTS-- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~--ST~-- 341 (887)
.+|.-.|-|+|++.|. +.-+|++.|||+| .-. ..| |.-+.- |++| +++||.||+ |+ ...
T Consensus 425 smG~glpaaiGa~la~----------~~~vv~i~GDG~f-~m~-~~E-L~Ta~r--~~lp-i~~vV~NN~-~~~~~~~~~ 487 (569)
T PRK09259 425 VMGIGMGYAIAAAVET----------GKPVVAIEGDSAF-GFS-GME-VETICR--YNLP-VTVVIFNNG-GIYRGDDVN 487 (569)
T ss_pred cccccHHHHHHHHhcC----------CCcEEEEecCccc-ccc-HHH-HHHHHH--cCCC-EEEEEEeCh-hHHHHHHHH
Confidence 4565678888888872 1238899999999 333 244 444455 9999 999999998 32 110
Q ss_pred ------C--CCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 ------P--NDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 ------~--~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
. .+-.+..+.+.+|++||+++++| .+++++..+.++|++ .++|+|||+.+=
T Consensus 488 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIev~id 546 (569)
T PRK09259 488 LSGAGDPSPTVLVHHARYDKMMEAFGGVGYNV--TTPDELRHALTEAIA----SGKPTLINVVID 546 (569)
T ss_pred hhcCCCccccccCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 0 00011235567999999999999 568888788887764 478999999973
No 134
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=97.59 E-value=0.00014 Score=86.88 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=76.2
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-. ..| |..|.- |++| +++||.||+ ||+--
T Consensus 401 g~mG~glpaAiGa~la~p---------~~~vv~i~GDG~f-~~~-~~e-L~ta~~--~~l~-v~ivV~NN~~~~~~~~~~ 465 (548)
T PRK08978 401 GTMGFGLPAAIGAQVARP---------DDTVICVSGDGSF-MMN-VQE-LGTIKR--KQLP-VKIVLLDNQRLGMVRQWQ 465 (548)
T ss_pred hhhhchHHHHHHHHHhCC---------CCcEEEEEccchh-hcc-HHH-HHHHHH--hCCC-eEEEEEeCCccHHHHHHH
Confidence 345666888888887742 3357899999999 332 233 334444 8999 777777664 44321
Q ss_pred ----C--CC--CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 341 ----S--PN--DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 341 ----~--~~--~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
. .. +.....+...+|++||+++.+| .+++++..+.+.|++ .++|.|||+.+-+
T Consensus 466 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 466 QLFFDERYSETDLSDNPDFVMLASAFGIPGQTI--TRKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred HHHhCCcceecCCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 00 0001235677999999999999 678888777777764 5789999999844
No 135
>PLN02573 pyruvate decarboxylase
Probab=97.59 E-value=0.00013 Score=87.70 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=75.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .=.. .| |--|.- |++| +++||.||+ ||+-....
T Consensus 428 gsmG~glpaaiGa~lA~p---------~r~vv~i~GDG~f-~m~~-~E-L~Ta~r--~~lp-vv~vV~NN~~yg~~~~~~ 492 (578)
T PLN02573 428 GSIGWSVGATLGYAQAAP---------DKRVIACIGDGSF-QVTA-QD-VSTMIR--CGQK-SIIFLINNGGYTIEVEIH 492 (578)
T ss_pred hhhhhhhhHHHHHHHhCC---------CCceEEEEeccHH-HhHH-HH-HHHHHH--cCCC-CEEEEEeCCceeEEEeec
Confidence 345666888888887752 3358999999999 2211 22 222333 8999 887777776 56432111
Q ss_pred ----CcccCCcccccccccC-----CcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 ----DLRSTLYCTDIGKIIE-----APVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ----~~rss~~~sd~Ak~~g-----iP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
........+.+|++|| +++++|+- +++.-.+.+.|++. ..++|+|||+.+
T Consensus 493 ~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~--~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 493 DGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRT--EEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred ccCccccCCCCHHHHHHHhcCcCCceeEEEecC--HHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 1112245677999985 89999975 77777777777642 248899999986
No 136
>PRK08617 acetolactate synthase; Reviewed
Probab=97.58 E-value=0.00013 Score=87.08 Aligned_cols=113 Identities=20% Similarity=0.158 Sum_probs=74.3
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC---
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS--- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~--- 341 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .-. ..| |.-|.- |++| +++||.||+ ||+--.
T Consensus 415 ~mG~~lpaaiGa~la~p---------~~~vv~i~GDGsf-~m~-~~e-L~Ta~~--~~lp-v~~vV~NN~~~~~~~~~~~ 479 (552)
T PRK08617 415 TLGVALPWAIAAALVRP---------GKKVVSVSGDGGF-LFS-AME-LETAVR--LKLN-IVHIIWNDGHYNMVEFQEE 479 (552)
T ss_pred cccccccHHHhhHhhcC---------CCcEEEEEechHH-hhh-HHH-HHHHHH--hCCC-eEEEEEECCccchHHHHHH
Confidence 34555777777776641 3457899999999 322 233 333566 9999 888888886 332100
Q ss_pred --CCC--c--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 342 --PND--L--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 342 --~~~--~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
... . .+..+...+|++||+++.+|. +++++..+.+.|+ +.++|+|||+.+-|
T Consensus 480 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~liev~~~~ 537 (552)
T PRK08617 480 MKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL----ATDGPVVIDIPVDY 537 (552)
T ss_pred hhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEecc
Confidence 000 0 012456779999999998775 5777766666665 45789999999843
No 137
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=97.58 E-value=0.00015 Score=86.97 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=78.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
..+|.-.|.|+|++.|.. +.-+|++.|||+| .=. ..| |.-+.- |++| +++||.||+ ||+...
T Consensus 421 g~mG~glpaAiGa~la~p---------~~~vv~i~GDG~f-~m~-~~e-L~Ta~~--~~l~-i~ivV~NN~~yg~i~~~q 485 (572)
T PRK06456 421 GTMGFGLPAAMGAKLARP---------DKVVVDLDGDGSF-LMT-GTN-LATAVD--EHIP-VISVIFDNRTLGLVRQVQ 485 (572)
T ss_pred ccccchhHHHHHHHHhCC---------CCeEEEEEccchH-hcc-hHH-HHHHHH--hCCC-eEEEEEECCchHHHHHHH
Confidence 455666888888888742 3468899999999 322 223 333445 8999 777777776 665321
Q ss_pred -------CC--CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 342 -------PN--DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 342 -------~~--~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. +.....+...+|++||+.+++| .+++++..+.+.|. +-++|+|||+.+-+
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v--~~~~eL~~al~~a~----~~~~p~lIev~v~~ 546 (572)
T PRK06456 486 DLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNV--TTYEDIEKSLKSAI----KEDIPAVIRVPVDK 546 (572)
T ss_pred HHhhCCCcccccCCCCCCHHHHHHHCCCeeEEe--CCHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 00 0011246778999999999988 57888877777665 34789999999854
No 138
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.55 E-value=0.00016 Score=86.79 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=77.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
+.+|.-.|.|+|++.|.. +.-+|++.|||+| .-.. .| |.-|.- |++| +++||.||+ ||+...
T Consensus 421 g~mG~glpaaiGa~la~p---------~~~vv~i~GDG~f-~m~~-~E-L~Ta~r--~~lp-v~~vV~NN~~y~~i~~~q 485 (572)
T PRK08979 421 GTMGFGLPAAMGVKFAMP---------DETVVCVTGDGSI-QMNI-QE-LSTALQ--YDIP-VKIINLNNRFLGMVKQWQ 485 (572)
T ss_pred ccccchhhHHHhhhhhCC---------CCeEEEEEcchHh-hccH-HH-HHHHHH--cCCC-eEEEEEeCCccHHHHHHH
Confidence 356777888888888752 2347899999999 3332 33 444555 9999 888887776 554220
Q ss_pred -------CCC--cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 -------PND--LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 -------~~~--~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
... -....+...+|++||+++++|+ +++++..+.+.|++. -++|+|||+.+=
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 546 (572)
T PRK08979 486 DMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVD 546 (572)
T ss_pred HHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeC
Confidence 000 0012456679999999999886 577777777777642 278999999884
No 139
>PRK08611 pyruvate oxidase; Provisional
Probab=97.55 E-value=0.00014 Score=87.37 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=75.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-. ..| |.-|.- |++| +++||.||+ ||+--
T Consensus 408 g~mG~glpaaiGa~la~p---------~~~Vv~i~GDGsf-~m~-~~e-L~Ta~r--~~l~-~iivV~NN~~~g~i~~~q 472 (576)
T PRK08611 408 GTMGCGLPGAIAAKIAFP---------DRQAIAICGDGGF-SMV-MQD-FVTAVK--YKLP-IVVVVLNNQQLAFIKYEQ 472 (576)
T ss_pred hhhhhhHHHHHHHHHhCC---------CCcEEEEEcccHH-hhh-HHH-HHHHHH--hCCC-eEEEEEeCCcchHHHHHH
Confidence 345655777788777642 2347999999999 443 233 334555 8999 777766664 55421
Q ss_pred --CC--C--CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 341 --SP--N--DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 341 --~~--~--~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. . ......+...+|++||+++++| .+++++-.+.+.|+ +.++|++||+.+-+
T Consensus 473 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v--~~~~eL~~al~~a~----~~~~p~lIeV~vd~ 531 (576)
T PRK08611 473 QAAGELEYAIDLSDMDYAKFAEACGGKGYRV--EKAEELDPAFEEAL----AQDKPVIIDVYVDP 531 (576)
T ss_pred HHhcCCcccccCCCCCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00 0 0011245677999999999999 56888877777665 44899999999854
No 140
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=97.54 E-value=0.0002 Score=85.46 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=76.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC--
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS-- 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~-- 341 (887)
+.+|.-.|-|+|++.|.. . +.-+|++.|||+| .-. . ..|.-|.- |++| +++||.||+ ||+--.
T Consensus 396 g~mG~glpaaiGa~la~p---~-----~~~Vv~i~GDGsf-~~~-~-~eL~Ta~~--~~lp-i~ivV~NN~~~g~i~~~q 461 (549)
T PRK06457 396 GSMGIGVPGSVGASFAVE---N-----KRQVISFVGDGGF-TMT-M-MELITAKK--YDLP-VKIIIYNNSKLGMIKFEQ 461 (549)
T ss_pred chhhhhHHHHHHHHhcCC---C-----CCeEEEEEcccHH-hhh-H-HHHHHHHH--HCCC-eEEEEEECCccchHHHHH
Confidence 455666788888887752 0 2347999999999 222 1 23344556 8999 777777775 443210
Q ss_pred -----CCCc--ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 -----PNDL--RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 -----~~~~--rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
+..+ ....+...+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+-
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~ 519 (549)
T PRK06457 462 EVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVD 519 (549)
T ss_pred HHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 0000 012356779999999999985 78888788777763 578999999983
No 141
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.49 E-value=0.00021 Score=78.33 Aligned_cols=111 Identities=21% Similarity=0.260 Sum_probs=77.2
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCc-ccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccC----
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDA-AFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTS---- 341 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDg-A~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~---- 341 (887)
|.-.|+|+|+.+|.. +.-+|++.||| ++ .-|. .|-. -|.- +++| +++||.||+ ||.|--
T Consensus 62 G~alp~A~GaklA~P---------d~~VV~i~GDG~~f-~ig~-~eL~-tA~r--rn~~-i~vIV~nN~~ygmtggQ~s~ 126 (279)
T PRK11866 62 GRVLPIATGVKWANP---------KLTVIGYGGDGDGY-GIGL-GHLP-HAAR--RNVD-ITYIVSNNQVYGLTTGQASP 126 (279)
T ss_pred ccHHHHHHHHHHHCC---------CCcEEEEECChHHH-HccH-HHHH-HHHH--HCcC-cEEEEEEChhhhhhcccccC
Confidence 777899999988843 23489999999 56 5552 3333 3445 7999 888888885 355431
Q ss_pred --CCCccc--C--------CcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 342 --PNDLRS--T--------LYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 342 --~~~~rs--s--------~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
+..++. + .+..++|+++|++.+ +....|++++..+.+.|++ .+||.|||+.+
T Consensus 127 ~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 127 TTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred CCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 000110 1 156689999999966 4577899999888888874 58999999974
No 142
>PRK05858 hypothetical protein; Provisional
Probab=97.49 E-value=0.00019 Score=85.70 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=76.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|.++|++.|.. +.-+|++.|||+| .-. ++|-...+ - |++| +++||.||+ ||+.-
T Consensus 407 gsmG~~lp~aiGa~la~p---------~r~vv~i~GDG~f-~~~-~~eL~Ta~-~--~~lp-i~ivV~NN~~y~~~~~~~ 471 (542)
T PRK05858 407 GCLGTGPGYALAARLARP---------SRQVVLLQGDGAF-GFS-LMDVDTLV-R--HNLP-VVSVIGNNGIWGLEKHPM 471 (542)
T ss_pred cccccchhHHHHHHHhCC---------CCcEEEEEcCchh-cCc-HHHHHHHH-H--cCCC-EEEEEEeCCchhhHHHHH
Confidence 345666788888877742 3459999999999 433 34444333 4 8999 888888883 44311
Q ss_pred ------CCC-CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 ------SPN-DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 ------~~~-~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
+.. +.....+...+|++||+++.+|+ ++++...+.++|++ .++|+|||+.+
T Consensus 472 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~ 529 (542)
T PRK05858 472 EALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLT 529 (542)
T ss_pred HHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEE
Confidence 000 11123456679999999999997 47777777777764 57899999998
No 143
>PRK08322 acetolactate synthase; Reviewed
Probab=97.49 E-value=0.00021 Score=85.26 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=74.5
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccC---
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTS--- 341 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~--- 341 (887)
.+|.-.|.|+|++.|.. +.-+|++.|||+| .-. ..| |--|.- |++| +++||.|| .||+...
T Consensus 407 ~mG~~lpaaiGa~la~p---------~~~vv~i~GDGsf-~m~-~~e-L~Ta~~--~~lp-v~iiV~NN~~~g~~~~~~~ 471 (547)
T PRK08322 407 TMGAGLPSAIAAKLVHP---------DRKVLAVCGDGGF-MMN-SQE-LETAVR--LGLP-LVVLILNDNAYGMIRWKQE 471 (547)
T ss_pred cccchhHHHHHHHHhCC---------CCcEEEEEcchhH-hcc-HHH-HHHHHH--hCCC-eEEEEEeCCCcchHHHHHH
Confidence 45666788888887742 3348899999999 322 233 222344 8999 66666555 5664320
Q ss_pred --CCCc----ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 342 --PNDL----RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 342 --~~~~----rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
..+. .+..+...+|++||+++++| .+++++..+.+.|++ .++|+|||+.+-
T Consensus 472 ~~~~~~~~~~~~~~df~~lA~a~G~~~~~v--~~~~eL~~al~~a~~----~~~p~lIev~v~ 528 (547)
T PRK08322 472 NMGFEDFGLDFGNPDFVKYAESYGAKGYRV--ESADDLLPTLEEALA----QPGVHVIDCPVD 528 (547)
T ss_pred hhcCCcccccCCCCCHHHHHHHCCCeEEEe--CCHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0000 01245677999999999999 568888888877763 478999999973
No 144
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=97.47 E-value=0.00021 Score=85.23 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=73.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. . .|--+.- |++| +++||.||+ ||+--
T Consensus 404 g~mG~glpaaiGa~la~p---------~~~vv~i~GDG~f-~m~~-~-EL~Ta~~--~~lp-i~~vV~NN~~y~~i~~~~ 468 (539)
T TIGR03393 404 GSIGYTLPAAFGAQTACP---------NRRVILLIGDGSA-QLTI-Q-ELGSMLR--DKQH-PIILVLNNEGYTVERAIH 468 (539)
T ss_pred hhhhhHHHHHHHHHhcCC---------CCCeEEEEcCcHH-HhHH-H-HHHHHHH--cCCC-CEEEEEeCCceEEEEeec
Confidence 345666888888887742 3347899999999 2221 2 2223344 8999 777777775 55421
Q ss_pred CCCC---cccCCcccccccccCCc----EEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 SPND---LRSTLYCTDIGKIIEAP----VFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 ~~~~---~rss~~~sd~Ak~~giP----~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
.... .........+|++||++ +++| .+++++..+.+.|+ +.++|+|||+.+
T Consensus 469 ~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v--~~~~el~~al~~a~----~~~~p~liev~i 526 (539)
T TIGR03393 469 GAEQRYNDIALWNWTHLPQALSLDPQSECWRV--SEAEQLADVLEKVA----AHERLSLIEVVL 526 (539)
T ss_pred CCCCCcCcCCCCCHHHHHHHcCCCCccceEEe--ccHHHHHHHHHHHh----ccCCeEEEEEEc
Confidence 0000 11124566799999996 7777 56777777777665 458899999986
No 145
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=97.45 E-value=0.00032 Score=77.33 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=74.8
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcc-cccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC---
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAA-FSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP--- 342 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA-~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~--- 342 (887)
|.-.|.|+|++.|.. +.-+|++.|||+ + +-|. .|..+ |.- +++| +++||.||+ ||++...
T Consensus 72 G~alpaAiGaklA~P---------d~~VV~i~GDG~~f-~mg~-~eL~t-A~r--~nl~-i~vIV~NN~~yGmt~~q~s~ 136 (286)
T PRK11867 72 GRALAIATGLKLANP---------DLTVIVVTGDGDAL-AIGG-NHFIH-ALR--RNID-ITYILFNNQIYGLTKGQYSP 136 (286)
T ss_pred hcHHHHHHHHHHhCC---------CCcEEEEeCccHHH-hCCH-HHHHH-HHH--hCCC-cEEEEEeCHHHhhhcCccCC
Confidence 666888999888742 345889999996 6 5552 33333 344 7999 777777775 5664311
Q ss_pred ---CCcc-c---------CCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 343 ---NDLR-S---------TLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 343 ---~~~r-s---------s~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
...+ + ......+|.++|+..+ ++.-.+++++..+.+.|++ .++|+|||+.
T Consensus 137 tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~ 200 (286)
T PRK11867 137 TSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEIL 200 (286)
T ss_pred CCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEe
Confidence 0000 0 0234568888998876 4567789999888888874 5789999997
No 146
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.39 E-value=0.0059 Score=78.91 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=120.3
Q ss_pred cchHHHHHHHHhhccCCCCCceEEeeeccccccch--hHHHHHHHhhHHHHhcC-ccCcEEEecc-cCCC----CCcccc
Q psy9579 613 LSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGA--QVIIDQFISSSEEKWGR-ISGLTLMLPH-GYEG----QGPEHS 684 (887)
Q Consensus 613 LsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~A--q~~~Dq~i~~~~~kw~~-~sglv~~lP~-G~~g----~GpeHS 684 (887)
=||.+.+|..+|++..|-++.+ |..+. -.++-.+ .++-. ..++||-+-. ++.+ -.+.||
T Consensus 58 EsE~~A~~av~GA~~aGara~T--------~TSs~GL~LM~e~l-----~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~ 124 (1165)
T TIGR02176 58 QSEAGAAGAVHGALQTGALTTT--------FTASQGLLLMIPNM-----YKIAGELLPCVFHVSARAIAAHALSIFGDHQ 124 (1165)
T ss_pred cchHHHHHHHHhHhhcCCCEEE--------ecChhHHHHHHHHH-----HHHHhccCCEEEEEecCCCCCCCCccCCCch
Confidence 3899999999999999987644 33222 1122222 22221 3577777653 2211 145677
Q ss_pred CchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCCCcc------ccCCC------
Q psy9579 685 SARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEASSTL------MDLAT------ 750 (887)
Q Consensus 685 s~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~s~~------~d~~~------ 750 (887)
.- .+ +..-|+.|++|+|+.+++++-..+.. ..+|.|||+|.--..+-|......+ ..|.+
T Consensus 125 Dv-----~~-~R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~ 198 (1165)
T TIGR02176 125 DV-----MA-ARQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAA 198 (1165)
T ss_pred HH-----HH-hhcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhccc
Confidence 52 22 45569999999999999999887743 4578999998765433221100000 00000
Q ss_pred --------------Cc-------ce------------------------eecccc-c-c-ccCCCCceEEEEEechHHHH
Q psy9579 751 --------------GK-------FN------------------------KIINEI-D-D-IIDPKKIKRIIACSGKIYYD 782 (887)
Q Consensus 751 --------------g~-------f~------------------------~~i~~~-~-~-~~~~~~v~r~i~~~G~~~~~ 782 (887)
|. |+ ...+.. . . .-..++.+.|||++|.+.-.
T Consensus 199 ~~~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~ 278 (1165)
T TIGR02176 199 FRKRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAET 278 (1165)
T ss_pred ccccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHH
Confidence 00 00 000000 0 0 00224567799999998777
Q ss_pred HHHHHH---HcCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q psy9579 783 LFNFRK---KKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQG 835 (887)
Q Consensus 783 l~~~~~---~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G 835 (887)
+.++.+ +.| .+|-+|+++.+.|||.+.|.+.|.+.- +.|++++-- ...|
T Consensus 279 ~~eav~~Lr~~G-~kVGli~vr~~rPFp~e~l~~aLp~sv--K~I~Vler~-~~~g 330 (1165)
T TIGR02176 279 IEETVDYLNAKG-EKVGLLKVRLYRPFSAETFFAALPKSV--KRIAVLDRT-KEPG 330 (1165)
T ss_pred HHHHHHHHHhcC-CceeEEEEeEeCCCCHHHHHHHHHhcC--CEEEEEECC-CCCC
Confidence 766543 335 699999999999999999999996543 347777655 3444
No 147
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.38 E-value=0.0011 Score=65.06 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=83.6
Q ss_pred ceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cC--CCCCc
Q psy9579 605 KFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GY--EGQGP 681 (887)
Q Consensus 605 ~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~--~g~Gp 681 (887)
+.+.++.+.+|.+.+|.+.||+..+. ++++..++|.|+..+ ++++.+. |....+++++..+ |. .+++.
T Consensus 34 ~~~~~~~~~~E~~a~~~A~G~a~~~~--~~v~~~~~gpg~~~~---~~~l~~a----~~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 34 DKRIIDTVIHELGAAGAAAGYARAGG--PPVVIVTSGTGLLNA---INGLADA----AAEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhhC--CEEEEEcCCCcHHHH---HHHHHHH----HhcCCCEEEEeCCCChhhhccCc
Confidence 45889999999999999999999876 589999999998765 8998743 3345888888754 33 24455
Q ss_pred cccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh---CCCCCcEEEEccc
Q psy9579 682 EHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII---RPIRKPLIIITPK 733 (887)
Q Consensus 682 eHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~---~~~r~Plv~~~pK 733 (887)
.|+.. -..++. +.+++.+..|+ +.+....|+++++ .+ +.|+++..|+
T Consensus 105 ~q~~~-~~~~~~--~~~~~~~~~~~-~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMF-DLGMYR--SIPEANISSPS-PAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred ccccC-HHHHHH--HhhheEEEeCC-HHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 45444 455554 44588887665 5677777777765 34 6899998774
No 148
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.37 E-value=0.00047 Score=82.63 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=74.9
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc----
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT---- 340 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST---- 340 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. .| |.-|.- |++| +++||.||+ ||+-.
T Consensus 415 ~mG~glpaaiGa~la~p---------~~~Vv~i~GDG~f-~m~~-~e-L~Ta~~--~~l~-i~~vV~NN~~y~~i~~~~~ 479 (561)
T PRK06048 415 TMGYGFPAAIGAKVGKP---------DKTVIDIAGDGSF-QMNS-QE-LATAVQ--NDIP-VIVAILNNGYLGMVRQWQE 479 (561)
T ss_pred ccccHHHHHHHHHHhCC---------CCcEEEEEeCchh-hccH-HH-HHHHHH--cCCC-eEEEEEECCccHHHHHHHH
Confidence 45666788888887742 3357899999999 4442 33 233334 8999 888888775 54321
Q ss_pred -----CCCCcc--cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 341 -----SPNDLR--STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 341 -----~~~~~r--ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
...... ...+...+|+++|+++++|+ +++++..+.+.|+ +.++|+|||+.+=
T Consensus 480 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~----~~~~p~liev~~~ 538 (561)
T PRK06048 480 LFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAV----ASDRPVVIDFIVE 538 (561)
T ss_pred HHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 011111 23456779999999999876 4777767777776 3578999999983
No 149
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=97.36 E-value=0.00028 Score=84.70 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=73.8
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
..+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. .| |.-|.- |++| +++||.||+ ||+-.
T Consensus 418 g~mG~glpaaiGa~lA~p---------~~~Vv~i~GDG~f-~m~~-~e-L~Ta~~--~~l~-i~~vV~NN~~y~~i~~~q 482 (566)
T PRK07282 418 GTMGFGIPAAIGAKIANP---------DKEVILFVGDGGF-QMTN-QE-LAILNI--YKVP-IKVVMLNNHSLGMVRQWQ 482 (566)
T ss_pred ccccchhhHhheeheecC---------CCcEEEEEcchhh-hccH-HH-HHHHHH--hCCC-eEEEEEeCCCchHHHHHH
Confidence 445666888999888752 2237899999999 3332 23 334444 9999 777777776 55321
Q ss_pred ------CCC--CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 341 ------SPN--DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 341 ------~~~--~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
... ......+.+.+|++||+...+|. +++++..+.+ ++ .-++|+|||+.+=+
T Consensus 483 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~----~~~~p~lIeV~v~~ 542 (566)
T PRK07282 483 ESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI----TEDVPMLIEVDISR 542 (566)
T ss_pred HHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh----cCCCCEEEEEEeCC
Confidence 001 11122456779999999999986 5666665554 22 23789999998843
No 150
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.33 E-value=0.0004 Score=84.15 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=75.0
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc----
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT---- 340 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST---- 340 (887)
.+|.-.|-|+|++.|.. +.-+|++.|||+| .-.. -.|--|.- |++| +++||.||+ ||+--
T Consensus 448 ~mG~glpaaiGa~la~p---------~~~Vv~i~GDG~f-~m~~--~eL~Ta~~--~~lp-v~ivV~NN~~~g~i~~~q~ 512 (612)
T PRK07789 448 TMGYAVPAAMGAKVGRP---------DKEVWAIDGDGCF-QMTN--QELATCAI--EGIP-IKVALINNGNLGMVRQWQT 512 (612)
T ss_pred cccchhhhHHhhhccCC---------CCcEEEEEcchhh-hccH--HHHHHHHH--cCCC-eEEEEEECCchHHHHHHHH
Confidence 34555788888887742 2347799999999 3221 22333344 8999 666666665 66421
Q ss_pred -----CCC--C-cc---cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 341 -----SPN--D-LR---STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 341 -----~~~--~-~r---ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
... + .. ...+...+|+++|+++++| ++++++-.+.+.|++. -++|+|||+.+-
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~a~~~---~~~p~lIev~i~ 576 (612)
T PRK07789 513 LFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRC--EREEDVDAVIEKARAI---NDRPVVIDFVVG 576 (612)
T ss_pred HhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEE--CCHHHHHHHHHHHHhc---CCCcEEEEEEEC
Confidence 000 0 00 1235677999999999998 5688888888888764 268999999983
No 151
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.29 E-value=0.00059 Score=82.47 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=79.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
..+|.-.|.|+|++.|.. +.-+|++.|||+| .-....|-.+ |.- +++| +++||.|| .||++-...
T Consensus 403 ~~mG~~~~~AiGa~~a~p---------~~~Vv~i~GDG~f-~~~g~~eL~t-av~--~~~~-i~~vVlnN~~~g~~~~q~ 468 (595)
T TIGR03336 403 LCMGASIGVASGLSKAGE---------KQRIVAFIGDSTF-FHTGIPGLIN-AVY--NKAN-ITVVILDNRITAMTGHQP 468 (595)
T ss_pred eccCchHHHHhhhhhcCC---------CCCEEEEeccchh-hhcCHHHHHH-HHH--cCCC-eEEEEEcCcceeccCCCC
Confidence 456777888899888742 2248999999999 4433445555 555 7999 88888888 566653110
Q ss_pred -Cc---c------cCCcccccccccCCcEEEEc-CCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 344 -DL---R------STLYCTDIGKIIEAPVFHVN-GDDPESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 344 -~~---r------ss~~~sd~Ak~~giP~~~Vd-G~D~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
.. + ...+...+|+++|++.++|. -.|.+++..+.+.|++ ..+|++|++.
T Consensus 469 ~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~ 528 (595)
T TIGR03336 469 NPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAK 528 (595)
T ss_pred CCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEc
Confidence 00 0 12457789999999999884 4677777777777774 4789999985
No 152
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=97.11 E-value=0.00073 Score=74.46 Aligned_cols=111 Identities=20% Similarity=0.162 Sum_probs=70.6
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccCCCC--
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTSPND-- 344 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~~~~-- 344 (887)
|...|.|+|+.+|.. +.-+|++.|||++.+-|. .| |--|.- +++| +++||.||+. |+|.-...
T Consensus 56 G~alPaAiGaklA~P---------d~~VVai~GDG~f~~mg~-~e-L~tA~r--~nl~-I~vIVlNN~~yGmt~gQ~sp~ 121 (287)
T TIGR02177 56 GRALPVATGIKLANP---------HLKVIVVGGDGDLYGIGG-NH-FVAAGR--RNVD-ITVIVHDNQVYGLTKGQASPT 121 (287)
T ss_pred ccHHHHHHHHHHHCC---------CCcEEEEeCchHHHhccH-HH-HHHHHH--hCcC-eEEEEEECHHHHhhhcccccC
Confidence 777899999888843 335899999999633442 22 333445 7999 8888888865 65541110
Q ss_pred ------cccCC--------c--ccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 345 ------LRSTL--------Y--CTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 345 ------~rss~--------~--~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
....+ . ...+|.+++.... ....+++++..+.+.|++ .+||+|||+.+
T Consensus 122 t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~-~~~~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 122 LLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVAR-GFSGDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ccCCcceeecccCccCCCCCHHHHHHhCCCCeEEE-EecCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00000 1 1124445554433 334799999888888874 58899999974
No 153
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.11 E-value=0.033 Score=63.65 Aligned_cols=229 Identities=17% Similarity=0.204 Sum_probs=129.9
Q ss_pred cchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhc-CccCcEEEecc--c-CCCC--CccccCc
Q psy9579 613 LSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWG-RISGLTLMLPH--G-YEGQ--GPEHSSA 686 (887)
Q Consensus 613 LsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~-~~sglv~~lP~--G-~~g~--GpeHSs~ 686 (887)
=||.+-++..+|.++.|-|..+ +..| -|=-.+.-. ..+|. ...++|+.+.. | ..|. .++||-
T Consensus 54 EsE~~a~s~v~GA~~aGar~~T---aTSg---~Gl~Lm~E~-----l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D- 121 (365)
T COG0674 54 ESEIGAISAVIGASYAGARAFT---ATSG---QGLLLMAEA-----LGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSD- 121 (365)
T ss_pred ccHHHHHHHHHHHHhhCcceEe---ecCC---ccHHHHHHH-----HHHHHhccCCeEEEEeccCcCCCcccccccHHH-
Confidence 3799999999999999988543 2222 121111111 22332 24688888764 2 2222 234543
Q ss_pred hHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccC-CCCCc---------cccCC-----
Q psy9579 687 RLERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKK-EASST---------LMDLA----- 749 (887)
Q Consensus 687 r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~-~~~s~---------~~d~~----- 749 (887)
+++.-. .|+-+++-+|..++|.+-..+.+ .+++-|++++..+.+..|. ..+.. +.++-
T Consensus 122 ----~~~~r~-~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~ 196 (365)
T COG0674 122 ----LMAARD-TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTAL 196 (365)
T ss_pred ----HHHHHc-cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCccccc
Confidence 333222 38888888899999999887754 4578999999877766553 11111 10110
Q ss_pred -------CCc---ce-eec---------cccc-----------cc--cC--------CCCceEEEEEechHHHHHHHHHH
Q psy9579 750 -------TGK---FN-KII---------NEID-----------DI--ID--------PKKIKRIIACSGKIYYDLFNFRK 788 (887)
Q Consensus 750 -------~g~---f~-~~i---------~~~~-----------~~--~~--------~~~v~r~i~~~G~~~~~l~~~~~ 788 (887)
.|. .. .+. +..+ .+ ++ .+|.+++|||||.....+.++..
T Consensus 197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~ 276 (365)
T COG0674 197 DPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVV 276 (365)
T ss_pred CCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHH
Confidence 010 00 000 0000 00 11 15777899999976555555432
Q ss_pred H---cCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCC
Q psy9579 789 K---KNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSC 861 (887)
Q Consensus 789 ~---~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~ 861 (887)
. .+.++|.++++|+++|||.+.|.+.++++.. ..|...| .-..|.+.-+...+...+.......+-||+.
T Consensus 277 ~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~--~~Vl~~e-~~~g~~~~~l~~~~~~~~~~~~~~~~~g~~~ 349 (365)
T COG0674 277 DLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNA--VVVLDVE-ISLGGLAEPLYLEVLAALYVESRYKLGGRDF 349 (365)
T ss_pred HHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccce--eEEEEEc-cCCccchhhHHHHhhcceeeceeeccCCccC
Confidence 2 2236899999999999999999999999873 2344444 3233333223222333222234556677765
No 154
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.94 E-value=0.0015 Score=87.34 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=76.4
Q ss_pred CCCcccc--cccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCce-e-
Q psy9579 263 NPSHLEI--INPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIG-F- 338 (887)
Q Consensus 263 npShle~--v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g-~- 338 (887)
|-..+|. ..|-|+|++.|. .+ -++++.|||+| .- ...|=..++.. -|++| +++||.||+-+ +
T Consensus 757 ~~G~mG~~G~lpaAIGaala~--~r--------~Vv~i~GDGsF-~m-~~~EL~Ta~r~-~~~lp-i~iVV~NN~gggi~ 822 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC--NK--------RVLCVVGDISF-LH-DTNGLSILSQR-IARKP-MTILVINNHGGAIF 822 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC--CC--------CEEEEEehHHH-Hh-hhhHHHHhhcc-cCCCC-EEEEEEeCCCcHhh
Confidence 3344555 488899988875 11 36889999999 21 12222222221 15899 99999999853 3
Q ss_pred ccCC----CC-----c----ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 339 TTSP----ND-----L----RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 339 ST~~----~~-----~----rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
...+ .. . ....+...+|++||++.++|+ +++++..+.+.|. +.++|+|||+.|-|
T Consensus 823 ~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~----~~~~p~lIEV~t~~ 890 (1655)
T PLN02980 823 SLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ----VEQMDCVVEVESSI 890 (1655)
T ss_pred hcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh----ccCCCEEEEEecCh
Confidence 2210 00 0 012457779999999999997 5777766666655 45889999999943
No 155
>KOG1185|consensus
Probab=96.78 E-value=0.0061 Score=70.23 Aligned_cols=111 Identities=22% Similarity=0.211 Sum_probs=78.3
Q ss_pred ccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-Cc-eeccCCCCcc--
Q psy9579 271 NPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QI-GFTTSPNDLR-- 346 (887)
Q Consensus 271 ~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~-g~ST~~~~~r-- 346 (887)
.-|..|.|.|.+.-.- +.-++|+.||+||-=-+.=.||+-- |++| +|.||.|| ++ |+-+....+-
T Consensus 432 MGVG~Gfalaaa~~~P-----~~~V~~veGDsaFGfSaME~ET~vR-----~~Lp-vv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 432 MGVGLGFALAAALAAP-----DRKVVCVEGDSAFGFSAMELETFVR-----YKLP-VVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred cccchhHHHHHHhhCC-----CCeEEEEecCcccCcchhhHHHHHH-----hcCC-eEEEEecCCcccccCcccHHHHhh
Confidence 4567788888887764 7789999999999334455566543 9999 99999966 33 3332211111
Q ss_pred -------------cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 347 -------------STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 347 -------------ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
....--.+++++|..++.|+ .++.+..+++.|+ +...+|++|.++-
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~---q~~~~psvINVlI 559 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQAC---QDTDKPSVINVLI 559 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHH---hcCCCCeEEEEEe
Confidence 11123458999999999999 8888888877776 4666899999873
No 156
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=96.65 E-value=0.0047 Score=73.82 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=71.8
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC-
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN- 343 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~- 343 (887)
.+|.-.|-|+|++.|. . +.+ |++.|||+| . =..+|-- -|.- |++| +++||.||+ ||+-....
T Consensus 404 ~mG~glpaaiGa~lA~---~------~r~-v~i~GDG~f-~-m~~~EL~-Ta~r--~~lp-v~~vV~NN~~y~~~~~~~~ 467 (535)
T TIGR03394 404 GMGFGVPAGIGAQCTS---G------KRI-LTLVGDGAF-Q-MTGWELG-NCRR--LGID-PIVILFNNASWEMLRVFQP 467 (535)
T ss_pred hhhhHHHHHHHHHhCC---C------CCe-EEEEeChHH-H-hHHHHHH-HHHH--cCCC-cEEEEEECCccceeehhcc
Confidence 4466688899988874 1 223 668999999 2 2233322 2333 8999 888887775 55422110
Q ss_pred C----cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 D----LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ~----~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
. .....+...+|++||++.++|+ +++++..+.+.|++ ..++|+|||+.+
T Consensus 468 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i 520 (535)
T TIGR03394 468 ESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAML 520 (535)
T ss_pred CCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEEC
Confidence 0 0112355668999999998886 47777777777764 335689999985
No 157
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.18 E-value=0.12 Score=66.41 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=117.8
Q ss_pred HHHHHhhHHHHhcCccCcEEEec--ccCCCCCccccCch---HHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHH--hCCC
Q psy9579 651 IDQFISSSEEKWGRISGLTLMLP--HGYEGQGPEHSSAR---LERFLQLCANNNIQIVQPTSASQIFHLLRYQI--IRPI 723 (887)
Q Consensus 651 ~Dq~i~~~~~kw~~~sglv~~lP--~G~~g~GpeHSs~r---~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~--~~~~ 723 (887)
-|-|.+...+--...-|+|++.= ||- |||+- -+.|+..+ +|-|+.||++++++.+.+.+. .+.+
T Consensus 133 aD~l~h~n~~gt~~~GGvv~v~gDDpg~------~SSq~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~a~~lSr~~ 203 (1186)
T PRK13029 133 GDALRHANLAGTSPLGGVLVLAGDDHGA------KSSSVAHQSDHTFIAW---GIPVLYPASVQDYLDYGLHGWAMSRYS 203 (1186)
T ss_pred hhHHHHhhccccCCCCcEEEEEecCCCC------ccccCHHHHHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHh
Confidence 67777543233233446777652 333 44431 13455545 899999999999998888764 4666
Q ss_pred CCcEEEEccccccccCCCC--Cc------c-ccCC--CC-c-ceeecc--------------------cccc----ccCC
Q psy9579 724 RKPLIIITPKSLLRKKEAS--ST------L-MDLA--TG-K-FNKIIN--------------------EIDD----IIDP 766 (887)
Q Consensus 724 r~Plv~~~pK~Llr~~~~~--s~------~-~d~~--~g-~-f~~~i~--------------------~~~~----~~~~ 766 (887)
.-||++=.-..+-.....+ ++ + .+|. +| . .+.+.. .+.. ...+
T Consensus 204 g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~ 283 (1186)
T PRK13029 204 GLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDG 283 (1186)
T ss_pred CCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccC
Confidence 7888875433333111111 00 0 1121 11 1 111100 0000 0012
Q ss_pred CCceEEEEEechHHHHHHHHHHHcCCCc-------EEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHH
Q psy9579 767 KKIKRIIACSGKIYYDLFNFRKKKNKND-------VVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQ 839 (887)
Q Consensus 767 ~~v~r~i~~~G~~~~~l~~~~~~~~~~~-------v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~ 839 (887)
.+-+.-|||+|+.|.++.++...+|..+ +.|..|-.-+|||.+.|.+-++.... |++|+|- -.+
T Consensus 284 ~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~---vlVVEE~------~p~ 354 (1186)
T PRK13029 284 PNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQSVREFAQGLEE---VLVVEEK------RAV 354 (1186)
T ss_pred CCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEEeCCCCCCCHHHHHHHHhcCCE---EEEEecC------chH
Confidence 2234579999999999999988877642 88999999999999999999998765 6777664 257
Q ss_pred HHHHHHHhhcc---CCcEEEecCCC
Q psy9579 840 IKENILKYLNS---TQKLIYVGRSC 861 (887)
Q Consensus 840 i~~~i~~~~~~---~~~~~~~gr~~ 861 (887)
|...|.+.+.+ ..+.++.|+..
T Consensus 355 iE~qlk~~l~~~~~~~rp~v~GK~~ 379 (1186)
T PRK13029 355 IEYQLKEELYNWREDVRPAIFGKFD 379 (1186)
T ss_pred HHHHHHHHHhhccCCcCCeeEeccc
Confidence 88888887653 22236788865
No 158
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=95.99 E-value=0.017 Score=64.90 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=69.3
Q ss_pred ccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhcc-CCCCCCCEEEEEEeCCceeccCCCCc
Q psy9579 267 LEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKI-DSYNTGGTIHIIINNQIGFTTSPNDL 345 (887)
Q Consensus 267 le~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l-~~~~lpGvIfiv~NNq~g~ST~~~~~ 345 (887)
||-...+|.|+++ .. .+-+++|+.|||.+ ..|-..-+-..-.. ..-.-|-|+=|+.=|+|=|+-|+.-+
T Consensus 142 LGYaLshA~GA~~----Dn-----Pdliv~~vvGDGEa-ETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pTil~ 211 (379)
T PF09364_consen 142 LGYALSHAFGAVF----DN-----PDLIVACVVGDGEA-ETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNPTILA 211 (379)
T ss_dssp TS-HHHHHHHHHT----T------TT-EEEEEEETTGG-GSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-HHH
T ss_pred hhhHHHHHhhccc----CC-----CCeEEEEEecCCcc-cCCcccccccccceeCcccCceeeceEEecCccccCCeEee
Confidence 4444566777665 22 37899999999999 88876655543332 11111225666667999999987766
Q ss_pred ccC-CcccccccccCCcEEEEcCCCHHHHHHHHHHHHHH
Q psy9579 346 RST-LYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEY 383 (887)
Q Consensus 346 rss-~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~ 383 (887)
|-+ ..+.+..++||...+.|+|+||.++...+..|++.
T Consensus 212 r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~ 250 (379)
T PF09364_consen 212 RMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDW 250 (379)
T ss_dssp HS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 554 56888899999999999999999998877666544
No 159
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.76 E-value=0.3 Score=63.17 Aligned_cols=233 Identities=15% Similarity=0.203 Sum_probs=134.9
Q ss_pred EEeccccchHHHHHHHHhhccCCCCCc-------eEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEec--ccCC
Q psy9579 607 HIINSILSEEAILGFEYGFSTASPNTL-------TIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLP--HGYE 677 (887)
Q Consensus 607 ~V~nspLsE~ailG~~~G~a~~~~~~l-------~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP--~G~~ 677 (887)
-++---+.|.--+=..+|.++.+.++= -+|=. =+ -|--+.-|-|.+..-+--....|+|++.= ||-
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~-K~---~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~- 149 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYG-KG---PGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGC- 149 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEec-Cc---CCcccchhHHHHHHhhcCCCCCcEEEEEecCCCC-
Confidence 455566788888888899995544320 12210 00 02223468777543221111456777752 332
Q ss_pred CCCccccCch---HHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHH--hCCCCCcEEEEccccccccCCCC---------C
Q psy9579 678 GQGPEHSSAR---LERFLQLCANNNIQIVQPTSASQIFHLLRYQI--IRPIRKPLIIITPKSLLRKKEAS---------S 743 (887)
Q Consensus 678 g~GpeHSs~r---~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~--~~~~r~Plv~~~pK~Llr~~~~~---------s 743 (887)
|||+- -+.|+.++ +|-|+.||||++++.+.+.+. .+.+.-||++=.-..+-.....+ .
T Consensus 150 -----~SSq~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~ 221 (1159)
T PRK13030 150 -----VSSSMPHQSDFALIAW---HMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWP 221 (1159)
T ss_pred -----ccCcCHHHHHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCC
Confidence 45441 13455444 899999999999999998875 46667788774322222110000 0
Q ss_pred ccccCC--CC----cceee--------c----------cccccc----cCCCCceEEEEEechHHHHHHHHHHHcCCCc-
Q psy9579 744 TLMDLA--TG----KFNKI--------I----------NEIDDI----IDPKKIKRIIACSGKIYYDLFNFRKKKNKND- 794 (887)
Q Consensus 744 ~~~d~~--~g----~f~~~--------i----------~~~~~~----~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~- 794 (887)
...+|. +| ++..+ + ..+..+ ..+.+-+.-|||+|+.|.++.+|.+.++..+
T Consensus 222 ~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~ 301 (1159)
T PRK13030 222 APEDFTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDA 301 (1159)
T ss_pred CccccCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcc
Confidence 001221 11 11110 0 000000 0111234589999999999999998877644
Q ss_pred ------EEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc---CCcEEEecCCC
Q psy9579 795 ------VVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS---TQKLIYVGRSC 861 (887)
Q Consensus 795 ------v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~---~~~~~~~gr~~ 861 (887)
+.|..|-.-+|||.+.|.+-++...+ |++|+|-. .+|...|.+.+.. ..+.+..|+..
T Consensus 302 ~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~---VlVVEE~~------p~iE~Qlk~~l~~~~~~~~~~v~GK~~ 368 (1159)
T PRK13030 302 DLRAAGIRIYKVGLSWPLEPTRLREFADGLEE---ILVIEEKR------PVIEQQIKDYLYNRPGGARPRVVGKHD 368 (1159)
T ss_pred cccccCccEEEeCCccCCCHHHHHHHHhcCCE---EEEEeCCc------hHHHHHHHHHHHhccccCCceeEEEEC
Confidence 67777779999999999999998765 67776642 5688888776543 12356677754
No 160
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.47 E-value=0.48 Score=61.21 Aligned_cols=193 Identities=12% Similarity=0.170 Sum_probs=116.0
Q ss_pred HHHHHhhHHHHhcCccCcEEEec--ccCCCCCccccCch---HHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHH--hCCC
Q psy9579 651 IDQFISSSEEKWGRISGLTLMLP--HGYEGQGPEHSSAR---LERFLQLCANNNIQIVQPTSASQIFHLLRYQI--IRPI 723 (887)
Q Consensus 651 ~Dq~i~~~~~kw~~~sglv~~lP--~G~~g~GpeHSs~r---~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~--~~~~ 723 (887)
-|-|.+...+--...-|+|+++= ||- |||+- -+.|+.++ +|-|+.||+|++++.+.+.+. .+.+
T Consensus 130 aD~l~~~n~~G~~~~GGvv~v~gDDpg~------~SSq~eqdSr~~~~~a---~iPvl~Ps~~qE~~d~~~~g~~lSr~~ 200 (1165)
T PRK09193 130 GDVFRHANAAGTSPHGGVLALAGDDHAA------KSSTLPHQSEHAFKAA---GMPVLFPANVQEILDYGLHGWAMSRYS 200 (1165)
T ss_pred HhHHHHHHhhcCCCCCcEEEEEecCCCC------ccccchhhhHHHHHHc---CCceeCCCCHHHHHHHHHHHHHHHHHh
Confidence 67776442221111356777763 332 34331 13455544 899999999999998888764 4667
Q ss_pred CCcEEEEccccccccCC---------CCCccccC--CCC----cceee--------cc----------ccccc----cCC
Q psy9579 724 RKPLIIITPKSLLRKKE---------ASSTLMDL--ATG----KFNKI--------IN----------EIDDI----IDP 766 (887)
Q Consensus 724 r~Plv~~~pK~Llr~~~---------~~s~~~d~--~~g----~f~~~--------i~----------~~~~~----~~~ 766 (887)
.-||++=.-..+-.... ......+| .++ +|..+ +. .+..+ ..+
T Consensus 201 g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~ 280 (1165)
T PRK09193 201 GLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDS 280 (1165)
T ss_pred CCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC
Confidence 78888743322221100 00011122 223 22111 00 00000 011
Q ss_pred CCceEEEEEechHHHHHHHHHHHcCCC-------cEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHH
Q psy9579 767 KKIKRIIACSGKIYYDLFNFRKKKNKN-------DVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQ 839 (887)
Q Consensus 767 ~~v~r~i~~~G~~~~~l~~~~~~~~~~-------~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~ 839 (887)
.+-+.-|||+|+.|.++.++.+.+|+. .+.|..|-..+|||.+.|.+-++.... |++|+|= -.+
T Consensus 281 ~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~---vlVVEE~------~p~ 351 (1165)
T PRK09193 281 PNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFAEGLDE---ILVVEEK------RQI 351 (1165)
T ss_pred CCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHHhcCCE---EEEEecC------chH
Confidence 123457999999999999998887763 389999999999999999999998764 6777664 257
Q ss_pred HHHHHHHhhcc---CCcEEEecCCC
Q psy9579 840 IKENILKYLNS---TQKLIYVGRSC 861 (887)
Q Consensus 840 i~~~i~~~~~~---~~~~~~~gr~~ 861 (887)
|...|.+.+.+ ..+.++.|+..
T Consensus 352 iE~qlk~~l~~~~~~~rp~v~GK~~ 376 (1165)
T PRK09193 352 IEYQLKEELYNWPDDVRPRVIGKFD 376 (1165)
T ss_pred HHHHHHHHHhhccCCcCceeEeeeC
Confidence 88888877653 22236788764
No 161
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=94.76 E-value=0.055 Score=63.30 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=68.5
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC----
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN---- 343 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~---- 343 (887)
|--.|-+.|++.|.+.++ +|+|+||||+ |=.++|-=.|-.. --.| +||++.|++|-|---..
T Consensus 414 G~t~pAalGa~~A~~drR---------~IL~iGDGs~--QlTvQEiStmiR~--gl~p-~ifvlNN~GYTIEr~IHg~~~ 479 (557)
T COG3961 414 GYTLPAALGAALAAPDRR---------VILFIGDGSL--QLTVQEISTMIRW--GLKP-IIFVLNNDGYTIERAIHGPTA 479 (557)
T ss_pred ccccHhhhhhhhcCCCcc---------EEEEEcCchh--hhhHHHHHHHHHc--CCCc-EEEEEcCCCcEEEehhcCCCc
Confidence 445888999999988765 7999999999 7788887777654 3345 88888888885543222
Q ss_pred ---CcccCCcccccccccCCcEEEE--cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 344 ---DLRSTLYCTDIGKIIEAPVFHV--NGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 344 ---~~rss~~~sd~Ak~~giP~~~V--dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
+-.+-. -+.+-++||..-.+. .....+....+...+. +...++.|||++.
T Consensus 480 ~YNdI~~Wd-~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~i~lIEv~l 534 (557)
T COG3961 480 PYNDIQSWD-YTALPEAFGAKNGEAKFRATTGEELALALDVAF---ANNDRIRLIEVML 534 (557)
T ss_pred Ccccccccc-hhhhhhhcCCCCceEEEeecChHHHHHHHHHHh---cCCCceEEEEEec
Confidence 222222 344556666543222 2222233223333222 2334789999985
No 162
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=94.40 E-value=0.25 Score=54.93 Aligned_cols=112 Identities=18% Similarity=0.145 Sum_probs=77.3
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eecc------
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTT------ 340 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST------ 340 (887)
|-..|+|.|..+|.+.. -+|++-|||.+.+-|.-| |--+.- .+.- +..||.||++ |-|.
T Consensus 73 gra~a~atGik~A~~~l---------~Viv~gGDG~~~dIG~~~--l~h~~~--Rn~d-it~iv~DNevYgnTggQ~S~t 138 (294)
T COG1013 73 GRAAAVATGIKLANPAL---------SVIVIGGDGDAYDIGGNH--LIHALR--RNHD-ITYIVVDNEVYGNTGGQASPT 138 (294)
T ss_pred CcchhhHHHHHHhccCC---------eEEEEecchhHhhhhhHH--HHHHHH--cCCC-eEEEEECCeecccCCCccCCC
Confidence 66789999999987654 589999999665777654 222222 3444 8999999986 2221
Q ss_pred -CCCC--------cc--cCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 341 -SPND--------LR--STLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 341 -~~~~--------~r--ss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
|... .+ .-.++..+|.++|.+.+ ++---|+......++.|+++. ||.||++.+
T Consensus 139 Tp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~~----Gps~I~v~s 203 (294)
T COG1013 139 TPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEHK----GPSFIDVLS 203 (294)
T ss_pred CCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhcc----CCeEEEEec
Confidence 1000 01 11256667888998865 777778999988888888654 999999974
No 163
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=94.28 E-value=8.6 Score=47.11 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=42.5
Q ss_pred CCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC
Q psy9579 289 FGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS 341 (887)
Q Consensus 289 ~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~ 341 (887)
..++.-++||.|||.+ -++.-.+++.+|.. .+|-.+||||.=|.=-.-.|
T Consensus 218 ~~~~~~v~afLGDgEm-DEpes~gAi~~A~r--e~LdNlifVincNlQrLDgp 267 (887)
T COG2609 218 DTSDQKVWAFLGDGEM-DEPESRGAITEAAR--EKLDNLIFVINCNLQRLDGP 267 (887)
T ss_pred CCCCCeEEEEecCccc-CCchhhHHHHHHHH--hcCCceEEEEecchhhcCCc
Confidence 3568889999999999 99999999999999 99988999988775444433
No 164
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=93.31 E-value=0.24 Score=54.97 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=84.3
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc---------
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI--------- 336 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~--------- 336 (887)
+|+--.|-|.|..-|- .+.-++.+.||=-| | -.-|-|...+- +++| -||+++||-|
T Consensus 420 plgwtipaalgv~~ad---------p~r~vvalsgdydf--q-fmieelavgaq--~k~p-yihv~vnnaylglirqaqr 484 (592)
T COG3960 420 PLGWTIPAALGVCAAD---------PKRNVVAISGDYDF--Q-FLIEELAVGAQ--FKIP-YIHVLVNNAYLGLIRQAQR 484 (592)
T ss_pred CcccccchhhceeecC---------CCCceEEeecCchH--H-HHHHHHhhhhc--ccCc-eEEEEecchHHHHHHHHHh
Confidence 3466688888865442 13335677888777 2 33466666666 9999 9999999977
Q ss_pred eeccCCCCcccC---------Cc---ccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCC
Q psy9579 337 GFTTSPNDLRST---------LY---CTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN 404 (887)
Q Consensus 337 g~ST~~~~~rss---------~~---~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHn 404 (887)
||+.+..-+-.- .| -..++.+.|+..++| .+|++...|+..|.+......-||+||.+--|...-+
T Consensus 485 ~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv--~~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnis 562 (592)
T COG3960 485 AFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--FKPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNIS 562 (592)
T ss_pred cCCccceeeehhhccCCccccccCccceeehhccCceeEEe--cChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccc
Confidence 555433222111 11 122556667777776 5889999999999999999999999999876655444
Q ss_pred CC
Q psy9579 405 EQ 406 (887)
Q Consensus 405 e~ 406 (887)
.+
T Consensus 563 mg 564 (592)
T COG3960 563 MG 564 (592)
T ss_pred cc
Confidence 33
No 165
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=92.32 E-value=0.46 Score=54.13 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=63.4
Q ss_pred EEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceec-------cCCC---------CcccCCccccccc
Q psy9579 294 LPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFT-------TSPN---------DLRSTLYCTDIGK 356 (887)
Q Consensus 294 v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~S-------T~~~---------~~rss~~~sd~Ak 356 (887)
=++++-|||.+..-|.-+ |--+.. -+.. +.+||.||. ||.| ||.. ......++..++.
T Consensus 153 ~v~v~gGDG~~ydIG~~~--l~ha~~--r~~n-i~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~ 227 (365)
T cd03377 153 SVWIIGGDGWAYDIGYGG--LDHVLA--SGEN-VNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAM 227 (365)
T ss_pred ceEEEecchhhhccchhh--HHHHHH--cCCC-eEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHH
Confidence 578899999765666533 322333 3444 778888887 4444 1111 1111235667888
Q ss_pred ccCCcEE-EEcC-CCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 357 IIEAPVF-HVNG-DDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 357 ~~giP~~-~VdG-~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
++|++.+ ++-- -|+..+..++++|.++ +||.||++.+
T Consensus 228 a~g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~s 266 (365)
T cd03377 228 SYGNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYS 266 (365)
T ss_pred HcCCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEc
Confidence 8999876 5554 5999999999999864 9999999986
No 166
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=91.79 E-value=0.37 Score=55.46 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred ccccccHH--HHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCccc-cccccc-CCcEEEEcCCCHHHHHHHHH
Q psy9579 303 AFSGQGVV--METLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCT-DIGKII-EAPVFHVNGDDPESVILVTK 378 (887)
Q Consensus 303 A~~gqG~v--~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~s-d~Ak~~-giP~~~VdG~D~~AV~~a~~ 378 (887)
+|||||.. +|.+-++.. -.+| +|.++.+- -|-+|...-..+..+.. -+.-++ +.|.+.....|+.+++..+.
T Consensus 77 aTSg~Gl~lm~E~~~~a~~--~e~P-~Viv~~~R-~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~ 152 (376)
T PRK08659 77 ATSGPGFSLMQENIGYAAM--TETP-CVIVNVQR-GGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTI 152 (376)
T ss_pred ecCCCcHHHHHHHHHHHHH--cCCC-EEEEEeec-CCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHH
Confidence 46799987 799999888 8999 77777774 44444211001111111 121122 58889999999999999999
Q ss_pred HHHHHHHccCCcEEEEEEeeecCCCCCCC
Q psy9579 379 IAVEYRMKFKKDCIINIICFRKLGHNEQD 407 (887)
Q Consensus 379 ~A~e~~r~~~~PvlIe~vtYR~~GHne~D 407 (887)
.|++.+.+++-||++-..+| -+|+...
T Consensus 153 ~Af~lAE~~~~PViv~~D~~--lsh~~~~ 179 (376)
T PRK08659 153 RAFNLAEKYRTPVIVLADEV--VGHMREK 179 (376)
T ss_pred HHHHHHHHHCCCEEEEechH--hhCCccc
Confidence 99999999999999999994 8887544
No 167
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=89.19 E-value=0.65 Score=49.93 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=66.0
Q ss_pred ccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEec--ccCCCCCccccCch
Q psy9579 610 NSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLP--HGYEGQGPEHSSAR 687 (887)
Q Consensus 610 nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP--~G~~g~GpeHSs~r 687 (887)
--.=||-+.++..+|+|+.|-|.++.-= | -|=-++.|.+...+ - ...|+||.+= .|-..+++-|+.+
T Consensus 40 ~~~E~E~~A~~~~~GAs~aG~ra~t~ts---~---~Gl~lm~e~l~~a~--~--~~~P~V~~~~~R~g~~~g~~~~~~q- 108 (230)
T PF01855_consen 40 VQAESEHAAMEAAIGASAAGARAMTATS---G---PGLNLMAEPLYWAA--G--TELPIVIVVVQRAGPSPGLSTQPEQ- 108 (230)
T ss_dssp EE-SSHHHHHHHHHHHHHTT--EEEEEE---C---CHHHHHCCCHHHHH--H--TT--EEEEEEEB---SSSB--SB-S-
T ss_pred EEecchHHHHHHHHHHHhcCCceEEeec---C---CcccccHhHHHHHH--H--cCCCEEEEEEECCCCCCCCcCcCCh-
Confidence 3456899999999999999999765211 1 11122345544332 1 1346666543 2322223333333
Q ss_pred HHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEcccccccc
Q psy9579 688 LERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRK 738 (887)
Q Consensus 688 ~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~ 738 (887)
=..++ +.+-||.|+.|+|+.++|.+.+.+.+ .+++.|||++..+.+.-|
T Consensus 109 ~D~~~--~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~sh 159 (230)
T PF01855_consen 109 DDLMA--ARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLCSH 159 (230)
T ss_dssp HHHHH--TTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCCTC
T ss_pred hHHHH--HHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhhcC
Confidence 12333 33679999999999999999998843 568899999999888733
No 168
>KOG1184|consensus
Probab=88.58 E-value=0.86 Score=53.57 Aligned_cols=113 Identities=21% Similarity=0.122 Sum_probs=66.0
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCccc
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRS 347 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rs 347 (887)
|--.|-+.|.|.|.+.+ .+|+|.||||+ |=.+.|-..|.. |++|=.||++.||+|-|-....+..-
T Consensus 418 G~svga~lG~a~a~~e~---------rvilfiGDGs~--qlTvQeiStmir---~gl~~~if~~NN~GYTIE~~IH~~~Y 483 (561)
T KOG1184|consen 418 GWSVGATLGYAQAAPEK---------RVILFIGDGSF--QLTVQEISTMIR---WGLKPIIFLINNGGYTIEVEIHDGPY 483 (561)
T ss_pred cccchhhhhhhhccCCc---------eEEEEecCccc--eeeHHHHHHHHh---cCCCcEEEEEeCCceEEEEeecCCCc
Confidence 33366778888887663 58999999999 888888888876 56653777777777765554443110
Q ss_pred ----CCcccccccccCCcEEEEcCC---CHHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 348 ----TLYCTDIGKIIEAPVFHVNGD---DPESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 348 ----s~~~sd~Ak~~giP~~~VdG~---D~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
.-.-+++-.+||.-.=++-+. --+....+.+.+. -.+-+++.+||+.
T Consensus 484 n~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~--~~~~~~i~liEv~ 537 (561)
T KOG1184|consen 484 NDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDAT--FEKNDKIRLIEVI 537 (561)
T ss_pred cccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhh--hcccCceEEEEEe
Confidence 012344555555433111111 1122233333333 1355679999997
No 169
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=88.55 E-value=0.71 Score=49.61 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=61.6
Q ss_pred ccccccHH--HHHHHHhccCCCCCCCEEEEEEeC---CceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHH
Q psy9579 303 AFSGQGVV--METLNFSKIDSYNTGGTIHIIINN---QIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVT 377 (887)
Q Consensus 303 A~~gqG~v--~EaLN~A~l~~~~lpGvIfiv~NN---q~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~ 377 (887)
++||+|.. .|.|-+++- .++| +|+++.|= .-|.+|.++. .|+-.+.+.+.+.+...|+.+++.-+
T Consensus 65 ~ts~~Gl~lm~e~l~~a~~--~~~P-~V~~~~~R~g~~~g~~~~~~q-------~D~~~~~d~~~~vl~p~~~QEa~d~~ 134 (230)
T PF01855_consen 65 ATSGPGLNLMAEPLYWAAG--TELP-IVIVVVQRAGPSPGLSTQPEQ-------DDLMAARDSGWIVLAPSSPQEAYDMT 134 (230)
T ss_dssp EEECCHHHHHCCCHHHHHH--TT---EEEEEEEB---SSSB--SB-S-------HHHHHTTTSS-EEEE--SHHHHHHHH
T ss_pred eecCCcccccHhHHHHHHH--cCCC-EEEEEEECCCCCCCCcCcCCh-------hHHHHHHhcCeEEEeCCCHHHHHHHH
Confidence 34588865 577777776 9999 66666652 2233333322 33333346777788889999999999
Q ss_pred HHHHHHHHccCCcEEEEEEeeecCCCCCCC
Q psy9579 378 KIAVEYRMKFKKDCIINIICFRKLGHNEQD 407 (887)
Q Consensus 378 ~~A~e~~r~~~~PvlIe~vtYR~~GHne~D 407 (887)
..|.+.+.++.-||++-..+|+. .|+..+
T Consensus 135 ~~A~~lAe~~~~PViv~~Dg~~~-sh~~e~ 163 (230)
T PF01855_consen 135 LIAFNLAEKYQTPVIVLFDGFLC-SHSREP 163 (230)
T ss_dssp HHHHHHHHHHTSEEEEEEECCCC-TC-EEE
T ss_pred HHHHHHHHHHCCCEEEEechhhh-cCcccc
Confidence 99999999999999999999886 365543
No 170
>KOG4166|consensus
Probab=87.60 E-value=0.86 Score=52.32 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=73.9
Q ss_pred cccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccCCC----C
Q psy9579 270 INPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTSPN----D 344 (887)
Q Consensus 270 v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~~~----~ 344 (887)
-.|-|.|+.-|. .+.++|=+-|||+|+ +-.+.+|.+...++| +=.+|-||+- |+-|.-. +
T Consensus 529 GLPAAIGAsVA~---------P~~iViDIDGDaSF~-----Mt~~ELat~rq~~~P-VKiLiLNNeeqGMVtQWq~lFYe 593 (675)
T KOG4166|consen 529 GLPAAIGASVAN---------PDAIVIDIDGDASFI-----MTVQELATIRQENLP-VKILILNNEEQGMVTQWQDLFYE 593 (675)
T ss_pred CcchhhcccccC---------cccEEEeccCCceee-----eehHhhhhhhhcCCc-eEEEEecchhhhhHHHHHHHHHH
Confidence 367777765542 378999999999993 344567888889999 8888888863 4444210 0
Q ss_pred cc------cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 345 LR------STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 345 ~r------ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.| -.++.-..|.+.||+..+|--. ++.. +++.-.-..+||+++|++|-
T Consensus 594 ~rysHThQ~nPnf~klA~AmGikalRV~K~--edL~----~k~keflsTkGPvLleV~v~ 647 (675)
T KOG4166|consen 594 ARYSHTHQENPNFLKLAAAMGIKALRVTKK--EDLR----EKIKEFLSTKGPVLLEVIVP 647 (675)
T ss_pred hhhccccccCccHHHHHHhcCCchheeehH--HHHH----HHHHHHhCCCCCeEEEEEcc
Confidence 00 1245667899999999999642 3333 34444447799999999873
No 171
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=87.07 E-value=1.1 Score=51.74 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=69.6
Q ss_pred ccccccHHH--HHHHHhccCCCCCCCEEEEEEeCC---ceeccCCCCcccCCccccccccc-CCcEEEEcCCCHHHHHHH
Q psy9579 303 AFSGQGVVM--ETLNFSKIDSYNTGGTIHIIINNQ---IGFTTSPNDLRSTLYCTDIGKII-EAPVFHVNGDDPESVILV 376 (887)
Q Consensus 303 A~~gqG~v~--EaLN~A~l~~~~lpGvIfiv~NNq---~g~ST~~~~~rss~~~sd~Ak~~-giP~~~VdG~D~~AV~~a 376 (887)
|+||+|.-+ |.+-+|.. -.+| +|.++.+=. .|.-|....+ -.+ ..+...+ +.|-+...-.|+++++..
T Consensus 76 aTSg~G~~lm~E~~~~a~~--~e~P-~V~~~~~R~GpstG~p~~~~q~--D~~-~~~~~~hgd~~~ivl~p~~~qEa~d~ 149 (375)
T PRK09627 76 ASSGPGISLKAEQIGLGFI--AEIP-LVIVNVMRGGPSTGLPTRVAQG--DVN-QAKNPTHGDFKSIALAPGSLEEAYTE 149 (375)
T ss_pred ecCCchHHHHhhHHHHHHh--ccCC-EEEEEeccCCCcCCCCCccchH--HHH-HHhcCCCCCcCcEEEeCCCHHHHHHH
Confidence 567999865 99999988 9999 777666533 4444433211 001 1122222 367788999999999999
Q ss_pred HHHHHHHHHccCCcEEEEEEeeecCCCCCCC
Q psy9579 377 TKIAVEYRMKFKKDCIINIICFRKLGHNEQD 407 (887)
Q Consensus 377 ~~~A~e~~r~~~~PvlIe~vtYR~~GHne~D 407 (887)
+..|++.+.+++-||++-..+ ++ +|+...
T Consensus 150 t~~Af~lAE~~~~PViv~~D~-~l-sh~~~~ 178 (375)
T PRK09627 150 TVRAFNLAERFMTPVFLLLDE-TV-GHMYGK 178 (375)
T ss_pred HHHHHHHHHHHcCceEEecch-HH-hCCeee
Confidence 999999999999999999998 44 787543
No 172
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=86.40 E-value=4.1 Score=39.84 Aligned_cols=93 Identities=10% Similarity=0.126 Sum_probs=60.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
..++++.+|.|.. -..+.|-.|.. -++| +|+++-.....-.. . .......+.+..-++|-..+--.++.
T Consensus 60 ~~v~~~~~gpg~~----~~~~~l~~a~~--~~~P-vl~i~~~~~~~~~~--~--~~~q~~~~~~~~~~~~~~~~~~~~~~ 128 (154)
T cd06586 60 PPVVIVTSGTGLL----NAINGLADAAA--EHLP-VVFLIGARGISAQA--K--QTFQSMFDLGMYRSIPEANISSPSPA 128 (154)
T ss_pred CEEEEEcCCCcHH----HHHHHHHHHHh--cCCC-EEEEeCCCChhhhc--c--CcccccCHHHHHHHhhheEEEeCCHH
Confidence 4455556688776 23455555555 6799 99998655432110 1 11123344555556777777678888
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
.....+..|+..+....+||+|++
T Consensus 129 ~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 129 ELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEc
Confidence 888889999988888899999986
No 173
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=83.63 E-value=11 Score=39.09 Aligned_cols=147 Identities=19% Similarity=0.280 Sum_probs=68.9
Q ss_pred CCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCC-CccccCCceEEeccccchHHHHHHHHhhccCCCCC
Q psy9579 554 GYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLH-NVSKNQAKFHIINSILSEEAILGFEYGFSTASPNT 632 (887)
Q Consensus 554 ~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~-~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~ 632 (887)
..+.||+|-| .|-|-|-..++|.. .+.|...+..|-. ... .+...+.+.|||..+-|+-=||.++|...
T Consensus 16 ~~nfRvf~PD---Et~SNrL~~v~e~t----~r~w~~~~~~~~~~~~~---~~~G~V~e~LSEh~c~G~leGY~LtGrhg 85 (179)
T PF03894_consen 16 PRNFRVFGPD---ETASNRLNAVFEVT----NRQWMARILPPDDDEHL---APGGRVMEVLSEHQCQGWLEGYLLTGRHG 85 (179)
T ss_dssp TTTEEEEESS----TTTTT-GGGGGT------EE--S----TTT-TTE---ESS-SEEE-S-HHHHHHHHHHHHHTT-EE
T ss_pred CCcceeECCC---cchhhchHHHHHhc----ccccccccCCCcchhhc---ccCCeeeeecCHHHHHHHHHHHHhcCCcc
Confidence 5689999999 66677765555443 0111111111111 111 22356679999999999999999999875
Q ss_pred ceEEeeeccccccchhHHHHHHH----hhHHHHhcCc-cCcEEEe-cccC-------CCCCccccCchHHHHHhhhcCCC
Q psy9579 633 LTIWEAQFGDFANGAQVIIDQFI----SSSEEKWGRI-SGLTLML-PHGY-------EGQGPEHSSARLERFLQLCANNN 699 (887)
Q Consensus 633 l~i~E~qFgDF~~~Aq~~~Dq~i----~~~~~kw~~~-sglv~~l-P~G~-------~g~GpeHSs~r~Er~lq~~~~~n 699 (887)
|- +-+=-|+-.---|+.|++ .+.+..|+.. .+|.+++ -|.+ .-|.| .=++.++...+ +.
T Consensus 86 lf---~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdP----gfi~~~~~k~~-~~ 157 (179)
T PF03894_consen 86 LF---ASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDP----GFIDHVLNKKP-DV 157 (179)
T ss_dssp EE---EEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG-------THHHHHHCC---T-
T ss_pred cc---cccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCC----hHHHHHHhcCc-cc
Confidence 43 344446643223344432 1124445543 2466655 4544 34444 22444443332 47
Q ss_pred cEEEcCCCHhHHHHHHHHH
Q psy9579 700 IQIVQPTSASQIFHLLRYQ 718 (887)
Q Consensus 700 l~V~~pstpa~~~hlLr~q 718 (887)
.+|..|..+--+-..+..+
T Consensus 158 ~RvylPpDANtlLav~~~c 176 (179)
T PF03894_consen 158 VRVYLPPDANTLLAVMDHC 176 (179)
T ss_dssp EEEEE-SSHHHHHHHHHHH
T ss_pred ceeecCCcHhHHHHHHHHH
Confidence 8899887765554444433
No 174
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=81.45 E-value=7.5 Score=39.43 Aligned_cols=93 Identities=12% Similarity=-0.041 Sum_probs=56.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..- -++--|.. -++| +|+|.-+-...-- ........+..++.+.+---..+| ++++
T Consensus 64 ~~v~~~t~GpG~~n~~----~~l~~A~~--~~~P-vl~I~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v--~~~~ 132 (164)
T cd07039 64 LGVCLGSSGPGAIHLL----NGLYDAKR--DRAP-VLAIAGQVPTDEL--GTDYFQEVDLLALFKDVAVYNETV--TSPE 132 (164)
T ss_pred CEEEEECCCCcHHHHH----HHHHHHHh--cCCC-EEEEecCCccccc--CCCCCcccCHHHHHHHhhcEEEEe--CCHH
Confidence 5677777777777222 22333334 7899 9999865543211 001001112333444444334444 5888
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
.+..+++.|++.++...|||+|++
T Consensus 133 ~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 133 QLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 888999999988888889999997
No 175
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=81.38 E-value=2.9 Score=50.67 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=67.9
Q ss_pred ccccccH--HHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcc--cCCcccccccccCCcEEEEcCCCHHHHHHHHH
Q psy9579 303 AFSGQGV--VMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLR--STLYCTDIGKIIEAPVFHVNGDDPESVILVTK 378 (887)
Q Consensus 303 A~~gqG~--v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~r--ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~ 378 (887)
+|||+|. -+|.|.+|.. -.+| +|.++.| .-|-+|...-.. +.....--+.-=+.|.+.....|+.+++..+.
T Consensus 266 aTSg~Gl~lm~E~l~~a~~--~~~P-~Vi~~~~-R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~ 341 (562)
T TIGR03710 266 ATSGPGFALMTEALGLAGM--TETP-LVIVDVQ-RGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAI 341 (562)
T ss_pred cCCCCChhHhHHHHhHHHh--ccCC-EEEEEcc-cCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHH
Confidence 4568886 6899999998 9999 6666654 445555311111 10111111111147889999999999999999
Q ss_pred HHHHHHHccCCcEEEEEEeeecCCCCC
Q psy9579 379 IAVEYRMKFKKDCIINIICFRKLGHNE 405 (887)
Q Consensus 379 ~A~e~~r~~~~PvlIe~vtYR~~GHne 405 (887)
.|++.+.++.-||++-..+|. +|+.
T Consensus 342 ~Af~lAe~~~~PViv~~D~~l--~~~~ 366 (562)
T TIGR03710 342 EAFNLAEKYQTPVIVLSDQYL--ANSY 366 (562)
T ss_pred HHHHHHHHhcCCEEEEechHH--hCCc
Confidence 999999999999999999995 5543
No 176
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=81.23 E-value=9.8 Score=37.54 Aligned_cols=92 Identities=9% Similarity=0.012 Sum_probs=57.4
Q ss_pred eEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHH
Q psy9579 293 VLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPES 372 (887)
Q Consensus 293 ~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~A 372 (887)
.++++..|=|.+ -..+++--|.. -++| +|+|+-+-...-..... .......+..+.+-....++ +++++
T Consensus 61 ~v~~~~~gpG~~----n~~~~l~~A~~--~~~P-ll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~~~~~~~i--~~~~~ 129 (155)
T cd07035 61 GVVLVTSGPGLT----NAVTGLANAYL--DSIP-LLVITGQRPTAGEGRGA--FQEIDQVALFRPITKWAYRV--TSPEE 129 (155)
T ss_pred EEEEEcCCCcHH----HHHHHHHHHHh--hCCC-EEEEeCCCccccccCCc--ccccCHHHHHHHHhceEEEc--CCHHH
Confidence 344444455544 34566666677 7999 99988664432211110 00122233444444445555 58899
Q ss_pred HHHHHHHHHHHHHcc-CCcEEEEE
Q psy9579 373 VILVTKIAVEYRMKF-KKDCIINI 395 (887)
Q Consensus 373 V~~a~~~A~e~~r~~-~~PvlIe~ 395 (887)
+...+..|+..+... ++||.|++
T Consensus 130 ~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 130 IPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEe
Confidence 999999999999888 79999986
No 177
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=79.53 E-value=15 Score=36.56 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=53.2
Q ss_pred EEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHH
Q psy9579 294 LPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESV 373 (887)
Q Consensus 294 v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV 373 (887)
++++..|-|.+ + ...+|--|.. .+.| +|+|+-+-...-...+ . .....+ |....++-......-.|++++
T Consensus 67 v~~~~~gpG~~-n---~~~~l~~a~~--~~~P-~v~i~g~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (160)
T cd07034 67 AMTATSGPGLN-L---MAEALYLAAG--AELP-LVIVVAQRPGPSTGLP-K-PDQSDL-MAARYGGHPWPVLAPSSVQEA 136 (160)
T ss_pred EEEeeCcchHH-H---HHHHHHHHHh--CCCC-EEEEEeeCCCCCCCCC-C-cCcHHH-HHHHhCCCCEEEEeCCCHHHH
Confidence 66777766666 2 2233333334 7899 9999865432211100 0 000111 111222212333345689999
Q ss_pred HHHHHHHHHHHHccCCcEEEEE
Q psy9579 374 ILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 374 ~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
...++.|++.++.+++||+|-.
T Consensus 137 ~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 137 FDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHHHhCCCEEEEc
Confidence 9999999999999999999854
No 178
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=79.04 E-value=6.8 Score=39.62 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=58.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCcee-ccCC--CCcc--cC-CcccccccccCCcEEEE
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGF-TTSP--NDLR--ST-LYCTDIGKIIEAPVFHV 365 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~-ST~~--~~~r--ss-~~~sd~Ak~~giP~~~V 365 (887)
..++++..|=|.+-.-+-+.| |.. -++| +|+|+-+....- .+.. .... .. .+..++.+.+--...+|
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~----A~~--~~~P-vl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v 132 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAG----AYA--EHVP-VVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARL 132 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHH----HHH--cCCC-EEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEe
Confidence 456777777777733333333 344 7899 999986654211 0000 0000 00 02344555555555666
Q ss_pred cCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 366 NGDDPESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 366 dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
.+++.+-.+++.|+..+..+++||+|++
T Consensus 133 --~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 133 --TDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred --CCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4888999999999999999999999986
No 179
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=78.86 E-value=11 Score=38.28 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=67.6
Q ss_pred ccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCC------CccccC
Q psy9579 612 ILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQ------GPEHSS 685 (887)
Q Consensus 612 pLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~------GpeHSs 685 (887)
.-.|..-.|++-|+.+.+.++ .+.=...| ..|. +.-+. +++-....||+++. |+.|. +--...
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~-~v~~~~sG-~gn~----~~~l~---~a~~~~~~Pvl~i~--g~rg~~~~~~~~q~~~g 108 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKP-AILMQSSG-LGNS----INALA---SLNKTYGIPLPILA--SWRGVYKEKIPAQIPMG 108 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCc-EEEEeCCc-HHHH----HHHHH---HHHHcCCCCEEEEE--eccCCCCCCCccccchh
Confidence 457888889999988887654 34444455 3332 33322 22225567887776 22222 101111
Q ss_pred chHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccc
Q psy9579 686 ARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSL 735 (887)
Q Consensus 686 ~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~L 735 (887)
.-.|..|+.++.+ ....++|.|+ ..+.++++ ...|+|+.++-+|++
T Consensus 109 ~~~~~~l~~~~i~---~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~~ 156 (157)
T TIGR03845 109 RATPKLLDTLGIP---YTIPREPEEA-KLIEKAISDAYENSRPVAALLDPKY 156 (157)
T ss_pred hhhHHHHHHcCCC---eEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 2256778888654 5555779999 99999985 234599999998876
No 180
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=77.99 E-value=11 Score=43.04 Aligned_cols=92 Identities=12% Similarity=0.071 Sum_probs=65.8
Q ss_pred ccccH--HHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccc-c-----CCcEEEEcCCCHHHHHHH
Q psy9579 305 SGQGV--VMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKI-I-----EAPVFHVNGDDPESVILV 376 (887)
Q Consensus 305 ~gqG~--v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~-~-----giP~~~VdG~D~~AV~~a 376 (887)
||||. -+|.|++|+- -.+| +++++.+ .-|=+|-. +...=.|+--+ + +.|.+..+-.|+.+++.-
T Consensus 79 Sg~Gl~lm~E~l~~a~~--~e~P-~v~v~v~-R~~p~~g~----t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~ 150 (352)
T PRK07119 79 SSPGISLKQEGISYLAG--AELP-CVIVNIM-RGGPGLGN----IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDL 150 (352)
T ss_pred CcchHHHHHHHHHHHHH--ccCC-EEEEEec-cCCCCCCC----CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHH
Confidence 68887 5788999988 9999 6656555 22333311 11112233211 1 478889999999999999
Q ss_pred HHHHHHHHHccCCcEEEEEEeeecCCCCCC
Q psy9579 377 TKIAVEYRMKFKKDCIINIICFRKLGHNEQ 406 (887)
Q Consensus 377 ~~~A~e~~r~~~~PvlIe~vtYR~~GHne~ 406 (887)
+..|.+.+.+.+-||++-..+| .+|+..
T Consensus 151 ~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (352)
T PRK07119 151 TMLAFDLADKYRNPVMVLGDGV--LGQMME 178 (352)
T ss_pred HHHHHHHHHHhCCCEEEEcchh--hhCcee
Confidence 9999999999999999999995 367543
No 181
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=77.59 E-value=11 Score=49.50 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=63.6
Q ss_pred EEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eec-------cCCC---------CcccCCccccccc
Q psy9579 294 LPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFT-------TSPN---------DLRSTLYCTDIGK 356 (887)
Q Consensus 294 v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~S-------T~~~---------~~rss~~~sd~Ak 356 (887)
-++++-|||.+..-|-=+ |--+.. -+.. +.+||-||+. +-| ||.. ......++..+|.
T Consensus 953 sv~~~~GDG~~~diG~~~--l~~~~~--r~~~-v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~ 1027 (1165)
T TIGR02176 953 SVWIIGGDGWAYDIGYGG--LDHVLA--SGKD-VNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAM 1027 (1165)
T ss_pred eeEEEecchhhhccCccc--hHHHHH--cCCC-eEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHH
Confidence 588999999764555321 222223 3444 7788888875 332 2211 1112235666888
Q ss_pred ccCCcEE-EEc-CCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 357 IIEAPVF-HVN-GDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 357 ~~giP~~-~Vd-G~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
++|.+.+ ++. |-++..+..++++|.+ ++||.||++.+-=
T Consensus 1028 ~~g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~pC 1068 (1165)
T TIGR02176 1028 TYGYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYSPC 1068 (1165)
T ss_pred HCCCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEECCC
Confidence 8999875 676 6799999999998864 6899999998743
No 182
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=73.82 E-value=5.9 Score=46.20 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=65.6
Q ss_pred ccccccHH--HHHHHHhccCCCCCCCEEEEEEeCCce--eccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHH
Q psy9579 303 AFSGQGVV--METLNFSKIDSYNTGGTIHIIINNQIG--FTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTK 378 (887)
Q Consensus 303 A~~gqG~v--~EaLN~A~l~~~~lpGvIfiv~NNq~g--~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~ 378 (887)
|+||+|.. +|.|-+|+- -.+| +|+++.|=..+ .+|..++ .|.-.+-+...+.....|+.+++..+.
T Consensus 85 aTS~~Gl~lm~E~l~~aa~--~~~P-~V~~~~~R~~~~~~~i~~d~-------~D~~~~r~~g~ivl~p~s~QEa~d~~~ 154 (407)
T PRK09622 85 ATSSQGLALMVEVLYQASG--MRLP-IVLNLVNRALAAPLNVNGDH-------SDMYLSRDSGWISLCTCNPQEAYDFTL 154 (407)
T ss_pred ecCcchHHHHhhHHHHHHH--hhCC-EEEEEeccccCCCcCCCchH-------HHHHHHhcCCeEEEeCCCHHHHHHHHH
Confidence 45688875 688888888 9999 88887776643 2222211 111112234477789999999999999
Q ss_pred HHHHHHHcc--CCcEEEEEEeeecCCCC
Q psy9579 379 IAVEYRMKF--KKDCIINIICFRKLGHN 404 (887)
Q Consensus 379 ~A~e~~r~~--~~PvlIe~vtYR~~GHn 404 (887)
.|.+.+.+. .-||++-..+|+. +|.
T Consensus 155 ~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 155 MAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred HHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 999999998 8999999988763 443
No 183
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=72.23 E-value=17 Score=42.76 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=58.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCcee-------------ccCCC-----CcccCCcccc
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGF-------------TTSPN-----DLRSTLYCTD 353 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~-------------ST~~~-----~~rss~~~sd 353 (887)
+.=++++.||||+- ..+--|--|-. ++.-=+|.+..|-+||- .+-.. .....-+.+.
T Consensus 462 dreV~vmVGDGSym---MlnSEL~Tsv~--~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~ 536 (617)
T COG3962 462 DREVYVMVGDGSYM---MLNSELATSVM--LGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAA 536 (617)
T ss_pred CCeEEEEEcccchh---hhhHHHHHHHH--cCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHH
Confidence 45578899999982 22222223334 44441444445555542 22111 2233345666
Q ss_pred cccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe
Q psy9579 354 IGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC 397 (887)
Q Consensus 354 ~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt 397 (887)
.|.+||+...+|+ +++.. +.|++.+++..+.+||++.+
T Consensus 537 ~A~s~Ga~~~kv~--~i~eL----~aAL~~Ak~~~~ttvi~I~t 574 (617)
T COG3962 537 HAESYGAKAYKVG--TIEEL----EAALADAKASDRTTVIVIDT 574 (617)
T ss_pred HHhhcCceeEecC--CHHHH----HHHHHHHHhCCCCEEEEEec
Confidence 8889999999998 55554 56777788899999999985
No 184
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=71.89 E-value=30 Score=34.96 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=43.6
Q ss_pred CCCCCEEEEEEeCCceeccCCCCcccCCcccc-cccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 322 YNTGGTIHIIINNQIGFTTSPNDLRSTLYCTD-IGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 322 ~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd-~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
+++| +|+|+-.-...-..++ .+........ .-...++|...|+ +++.+ .++..|+..+.+.++||.|=+
T Consensus 83 ~~~P-vl~i~g~rg~~~~~~~-~q~~~g~~~~~~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 83 YGIP-LPILASWRGVYKEKIP-AQIPMGRATPKLLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred CCCC-EEEEEeccCCCCCCCc-cccchhhhhHHHHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 9999 9999944333100000 0111111111 1133567888884 48899 999999999999999999854
No 185
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=70.51 E-value=13 Score=42.80 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=68.8
Q ss_pred ccccccH--HHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHH
Q psy9579 303 AFSGQGV--VMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIA 380 (887)
Q Consensus 303 A~~gqG~--v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A 380 (887)
|+||||. .+|.|-+|.- -.+| +|.++.|....-+-.+...-.+.... ++--|.|.+... |+.+++..+..|
T Consensus 76 aTSg~Gl~Lm~E~l~~a~~--~~~P-~Vi~~~~R~~ps~g~p~~~dq~D~~~--~r~~g~~~~~~~--s~qEa~d~t~~A 148 (365)
T COG0674 76 ATSGQGLLLMAEALGLAAG--TETP-LVIVVAQRPLPSTGLPIKGDQSDLMA--ARDTGFPILVSA--SVQEAFDLTLLA 148 (365)
T ss_pred ecCCccHHHHHHHHHHHHh--ccCC-eEEEEeccCcCCCcccccccHHHHHH--HHccCceEEeec--cHHHHHHHHHHH
Confidence 4558885 6899999988 9999 88887777665554433222221111 122288888888 999999999999
Q ss_pred HHHHHccCCcEEEEEEeeecC
Q psy9579 381 VEYRMKFKKDCIINIICFRKL 401 (887)
Q Consensus 381 ~e~~r~~~~PvlIe~vtYR~~ 401 (887)
...+.+..-|+++=...|+..
T Consensus 149 f~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 149 FNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred HHHHHHhcCCEEEeeccchhc
Confidence 999999999999999988754
No 186
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=68.17 E-value=42 Score=33.28 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=67.8
Q ss_pred ceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cCCCCC-cc
Q psy9579 605 KFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GYEGQG-PE 682 (887)
Q Consensus 605 ~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~~g~G-pe 682 (887)
..+++.+- .|.+..+.+-||++.+.+ +++=.+=.-+.| .++.+.+. . ...+||+++.-. +..+.+ +.
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n----~~~~l~~a---~-~~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGAR--AMTATSGPGLNL----MAEALYLA---A-GAELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCc--EEEeeCcchHHH----HHHHHHHH---H-hCCCCEEEEEeeCCCCCCCCCC
Confidence 46777777 999999999999998765 333333222333 35555432 2 245888888642 111111 10
Q ss_pred ccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEc
Q psy9579 683 HSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIIT 731 (887)
Q Consensus 683 HSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~ 731 (887)
..++.+..- .+.. +-.-+..+++|+++..+++++++ ...|.||+++-
T Consensus 110 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PDQSDLMAA-RYGG-HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cCcHHHHHH-HhCC-CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 011212221 1222 25677789999999999999876 23357998873
No 187
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=66.66 E-value=18 Score=41.96 Aligned_cols=91 Identities=13% Similarity=-0.003 Sum_probs=62.4
Q ss_pred ccccccHH--HHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHH
Q psy9579 303 AFSGQGVV--METLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIA 380 (887)
Q Consensus 303 A~~gqG~v--~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A 380 (887)
|+||+|.. +|.|-+|+. -.+| +|.++. |.-+= |+..- + ..-+|.-...+.-.+..=..|+++++.-+..|
T Consensus 78 aTSg~Gl~lm~E~l~~aa~--~~lP-iVi~~~-~R~~p-~~~~~-~--~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~A 149 (390)
T PRK08366 78 ATSAQGLALMHEMLHWAAG--ARLP-IVMVDV-NRAMA-PPWSV-W--DDQTDSLAQRDTGWMQFYAENNQEVYDGVLMA 149 (390)
T ss_pred eeCcccHHHHhhHHHHHHh--cCCC-EEEEEe-ccCCC-CCCCC-c--chhhHHHHHhhcCEEEEeCCCHHHHHHHHHHH
Confidence 45688864 799999988 8999 776666 33332 32111 0 01122211222223555669999999999999
Q ss_pred HHHHHccCCcEEEEEEeeecC
Q psy9579 381 VEYRMKFKKDCIINIICFRKL 401 (887)
Q Consensus 381 ~e~~r~~~~PvlIe~vtYR~~ 401 (887)
++.+.++.-||++-..+||..
T Consensus 150 f~lAE~~~~PViv~~Dg~~~s 170 (390)
T PRK08366 150 FKVAETVNLPAMVVESAFILS 170 (390)
T ss_pred HHHHHHHCCCEEEEecCcccc
Confidence 999999999999999998865
No 188
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=65.52 E-value=33 Score=34.73 Aligned_cols=94 Identities=9% Similarity=-0.037 Sum_probs=59.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.- |--|.. .++| +|+|+-.-...-......+. ..+...+.+.+..-..+|. +++
T Consensus 65 ~~v~~~~~GpG~~n~~~~----l~~A~~--~~~P-vl~i~g~~~~~~~~~~~~q~-~~d~~~~~~~~~k~~~~v~--~~~ 134 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTG----LANAYA--DRIP-VLVITGQRPSAGEGRGAFQQ-EIDQQSLFRPVTKWSYRVT--SPD 134 (172)
T ss_dssp EEEEEEETTHHHHTTHHH----HHHHHH--TT-E-EEEEEEESSGGGTTTTSTTS-STHHHHHHGGGSSEEEEEC--SGG
T ss_pred ceEEEeecccchHHHHHH----Hhhccc--ceee-EEEEecccchhhhccccccc-chhhcchhccccchhcccC--CHH
Confidence 566777776666522222 222455 7899 99998876654444211110 1233445666666677774 677
Q ss_pred HHHHHHHHHHHHH-HccCCcEEEEE
Q psy9579 372 SVILVTKIAVEYR-MKFKKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~-r~~~~PvlIe~ 395 (887)
.+..+++.|+..+ ....+||+|++
T Consensus 135 ~~~~~~~~A~~~a~~~~~gPv~l~i 159 (172)
T PF02776_consen 135 DLPEALDRAFRAATSGRPGPVYLEI 159 (172)
T ss_dssp GHHHHHHHHHHHHHHCSTSEEEEEE
T ss_pred HHHHHHHHHHHHhccCCCccEEEEc
Confidence 7777788888888 78899999998
No 189
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=65.16 E-value=9.5 Score=45.74 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=69.0
Q ss_pred ccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceecc--CCCCcc----
Q psy9579 273 VVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTT--SPNDLR---- 346 (887)
Q Consensus 273 va~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST--~~~~~r---- 346 (887)
-|+|+++|.+. =+++++||=|+ +|-.=-++.......|=||+++.||+=||-. |.....
T Consensus 430 TA~Gi~~a~~~----------ptv~liGDLS~-----lhD~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe 494 (566)
T COG1165 430 TALGIARATQK----------PTVALIGDLSF-----LHDLNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFE 494 (566)
T ss_pred HHhhhhhhcCC----------ceEEEEechhh-----hhccchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHH
Confidence 47888876532 28899999999 6665455556446666578888888888765 322222
Q ss_pred ---c---CCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 347 ---S---TLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 347 ---s---s~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
. .-+.+..|++||+..-+++.-|= .+.|++-.-.-.|=.+||+.|-|
T Consensus 495 ~~F~tPh~ldF~~la~~y~l~y~~~~s~~~------l~~~~~~~~~~~g~~viEvkt~r 547 (566)
T COG1165 495 RLFGTPHGLDFAHLAATYGLEYHRPQSWDE------LGEALDQAWRRSGTTVIEVKTDR 547 (566)
T ss_pred HhcCCCCCCCHHHHHHHhCccccccCcHHH------HHHHHhhhccCCCcEEEEEecCh
Confidence 1 12466678888888888775332 24444444444668899999866
No 190
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=60.88 E-value=29 Score=42.32 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=62.6
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eecc-CCCCcc--------c-CCcccccccccCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTT-SPNDLR--------S-TLYCTDIGKIIEA 360 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST-~~~~~r--------s-s~~~sd~Ak~~gi 360 (887)
...+|+++||++|---|+-- |--|.- -+.+ ++.+|.+|.+ |+|- .|...+ + .-.+.++.|+.|+
T Consensus 445 ~k~~va~iGDsTF~HsGi~~--l~nAV~--n~~~-~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv 519 (640)
T COG4231 445 TKKIVAVIGDSTFFHSGILA--LINAVY--NKAN-ILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGV 519 (640)
T ss_pred CCceEEEeccccccccCcHH--HHHHHh--cCCC-eEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCc
Confidence 35789999999995556543 444444 5677 6666666665 5555 233222 1 1246678888898
Q ss_pred cEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 361 PVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 361 P~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
.-+ +||=-|+.++.++.++|+ +..+|.+|-+
T Consensus 520 ~~v~~vdp~~~~~~~~~~keal----e~~gpsViia 551 (640)
T COG4231 520 EDVETVDPYDVKELSEAIKEAL----EVPGPSVIIA 551 (640)
T ss_pred eeeeccCCcchHHHHHHHHHHh----cCCCceEEEE
Confidence 776 456688888877777776 5567888755
No 191
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=57.54 E-value=38 Score=39.33 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHH
Q psy9579 765 DPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQI 840 (887)
Q Consensus 765 ~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i 840 (887)
++++| +++..|+.=.-..+-.+..+ .++.+|+.++=.|++-++|.+.|++.+.++-|.++|-|.. -|.-.-+
T Consensus 79 pgdkV--Lv~~nG~FG~R~~~ia~~~g-~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETS-TGvlnpl 150 (383)
T COG0075 79 PGDKV--LVVVNGKFGERFAEIAERYG-AEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETS-TGVLNPL 150 (383)
T ss_pred CCCeE--EEEeCChHHHHHHHHHHHhC-CceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCc-ccccCcH
Confidence 45555 67777775444444445556 5999999999999999999999999999988999999964 4444433
No 192
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=55.36 E-value=48 Score=33.73 Aligned_cols=95 Identities=12% Similarity=-0.011 Sum_probs=50.1
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEE-cCCC-
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDD- 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D- 369 (887)
-.++++..|=|++..-+-++|+ .. -++| +|+|+-+-..... .....-..+...+.+.+---..+| +..+
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A----~~--~~~P-vl~i~g~~~~~~~--~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~ 131 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEA----YY--SGVP-LLVLTADRPPELR--GTGANQTIDQVGLFGDYVRWSVDLPPPEDD 131 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHH----Hh--cCCC-EEEEECCCCHHhc--CCCCCcccchhhhccceeeEEEecCCcccc
Confidence 5677777777777433333333 33 7889 9999864332210 000000011111222221222333 2222
Q ss_pred --HHHHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 370 --PESVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 370 --~~AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+.+..++..|+..++.+. |||+|++
T Consensus 132 ~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 132 DDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 3347778888888888876 8999987
No 193
>KOG1615|consensus
Probab=53.94 E-value=42 Score=35.59 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccC
Q psy9579 180 ILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFED 228 (887)
Q Consensus 180 ~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G 228 (887)
-+|+.+++.+-.+.+.+=++++--.|......++.+|.|...+++..+-
T Consensus 90 T~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~ 138 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELL 138 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheee
Confidence 3788888888888898877777799999999999999999999987553
No 194
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=51.09 E-value=99 Score=37.65 Aligned_cols=92 Identities=11% Similarity=-0.012 Sum_probs=53.3
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccC-Cccccccccc-CCcEEEEcCCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRST-LYCTDIGKII-EAPVFHVNGDD 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss-~~~sd~Ak~~-giP~~~VdG~D 369 (887)
-.++++..|=|++..-+-++++. . -++| +|+|+-.-... ...+.. ..+ |.-..+ .+--...--.+
T Consensus 64 ~gv~~~t~GPG~~n~~~~i~~A~----~--~~~P-vl~I~G~~~~~-----~~~~~~~q~i-d~~~~~~~vtk~~~~v~~ 130 (575)
T TIGR02720 64 IGVCFGSAGPGATHLLNGLYDAK----E--DHVP-VLALVGQVPTT-----GMNMDTFQEM-NENPIYADVAVYNRTAMT 130 (575)
T ss_pred ceEEEeCCCCcHHHHHHHHHHHh----h--cCCC-EEEEecCCccc-----cCCCCCccee-chhhhhhhcceEEEEeCC
Confidence 56777777888874433333333 3 7889 99998532211 001111 111 111111 11122234456
Q ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 370 PESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
++.+...+..|+..+....|||+|++=
T Consensus 131 ~~~~~~~i~~A~~~A~~~~GPV~l~iP 157 (575)
T TIGR02720 131 AESLPHVIDEAIRRAYAHNGVAVVTIP 157 (575)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 888888888888888888999999984
No 195
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=50.81 E-value=40 Score=39.25 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=61.6
Q ss_pred ccccccHH--HHHHHHhccCCCCCCCEEEEEEeCCceeccCCC-CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHH
Q psy9579 303 AFSGQGVV--METLNFSKIDSYNTGGTIHIIINNQIGFTTSPN-DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKI 379 (887)
Q Consensus 303 A~~gqG~v--~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~-~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~ 379 (887)
|+||||.. +|.|-+|+- -.+| +|+++.|=..+-.++.. ++...... -+.+.+.+=+.|+.+++.-+..
T Consensus 79 aTS~~Gl~lm~E~l~~aag--~~lP-~V~vv~~R~~~~p~~i~~d~~D~~~~------rd~g~~~~~a~~~QEa~D~~~~ 149 (394)
T PRK08367 79 ATASQGLALMHEVLFIAAG--MRLP-IVMAIGNRALSAPINIWNDWQDTISQ------RDTGWMQFYAENNQEALDLILI 149 (394)
T ss_pred eeccchHHHHhhHHHHHHH--ccCC-EEEEECCCCCCCCCCcCcchHHHHhc------cccCeEEEeCCCHHHHHHHHHH
Confidence 45689975 688888888 9999 66666544333211111 22111111 1333444556999999999999
Q ss_pred HHHHHH--ccCCcEEEEEEeeecCCCC
Q psy9579 380 AVEYRM--KFKKDCIINIICFRKLGHN 404 (887)
Q Consensus 380 A~e~~r--~~~~PvlIe~vtYR~~GHn 404 (887)
|.+.+. +..-||++-..+||. +|+
T Consensus 150 Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 150 AFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred HHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 999999 555899999999995 564
No 196
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=49.27 E-value=80 Score=38.39 Aligned_cols=94 Identities=9% Similarity=-0.058 Sum_probs=53.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-+-+++ |.. -++| +|+|.-.=. -+.......-..+..++.+.+-- ....=.+++
T Consensus 65 ~gv~~~t~GPG~~N~~~gla~----A~~--~~~P-vl~I~g~~~--~~~~~~~~~Q~~d~~~l~~~vtk--~~~~v~~~~ 133 (579)
T TIGR03457 65 MSMVIGQNGPGVTNCVTAIAA----AYW--AHTP-VVIVTPEAG--TKTIGLGGFQEADQLPMFQEFTK--YQGHVRHPS 133 (579)
T ss_pred CEEEEECCCchHHHHHHHHHH----Hhh--cCCC-EEEEeCCCc--cccCCCCCCcccchhhhhhccee--EEEecCCHH
Confidence 567777778888733333332 233 7899 999863111 00000000000112223332222 233337889
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
.+..+++.|+..+..++|||+|++=
T Consensus 134 ~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 134 RMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 9999999999999899999999983
No 197
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=48.31 E-value=81 Score=31.87 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=77.3
Q ss_pred ceEEeccccchHHHHHHHHhhccCCCCCceEEeeecc-ccccchhHHHHHHHhhHHHHhcCccCcEEEec---ccCCCCC
Q psy9579 605 KFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFG-DFANGAQVIIDQFISSSEEKWGRISGLTLMLP---HGYEGQG 680 (887)
Q Consensus 605 ~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFg-DF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP---~G~~g~G 680 (887)
..+++. ...|.+....+-||+..+.++ .+.=.+.| -+.|.. .-+ ..+ |....+|+++.- ....+++
T Consensus 39 ~i~~i~-~~~E~~A~~~A~g~ar~~g~~-~v~~~~~GpG~~n~~----~~l---~~A-~~~~~Pvl~i~g~~~~~~~~~~ 108 (172)
T PF02776_consen 39 GIRFIP-VRHEQGAAFMADGYARATGRP-GVVIVTSGPGATNAL----TGL---ANA-YADRIPVLVITGQRPSAGEGRG 108 (172)
T ss_dssp TSEEEE--SSHHHHHHHHHHHHHHHSSE-EEEEEETTHHHHTTH----HHH---HHH-HHTT-EEEEEEEESSGGGTTTT
T ss_pred ceeeec-ccCcchhHHHHHHHHHhhccc-eEEEeecccchHHHH----HHH---hhc-ccceeeEEEEecccchhhhccc
Confidence 356665 678999999999999866543 34444443 344432 222 223 333578777763 3455667
Q ss_pred ccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh---CCCCCcEEEEcccccccc
Q psy9579 681 PEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII---RPIRKPLIIITPKSLLRK 738 (887)
Q Consensus 681 peHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~---~~~r~Plv~~~pK~Llr~ 738 (887)
..|......++|.-+ .-....+++|.+.-..|+++++ ...+.|+.+--|+.++..
T Consensus 109 ~~q~~~d~~~~~~~~---~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~~~ 166 (172)
T PF02776_consen 109 AFQQEIDQQSLFRPV---TKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQEA 166 (172)
T ss_dssp STTSSTHHHHHHGGG---SSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHHTS
T ss_pred ccccchhhcchhccc---cchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHhhC
Confidence 777434456666543 2346667889999999988865 345699999999988864
No 198
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=47.59 E-value=93 Score=37.49 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=57.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-+-++|+ .. =++| +|+|+-.-..-... ....-..+..++.+.+---..+| ++++
T Consensus 64 ~gv~~~t~GpG~~n~~~~l~~A----~~--~~~P-vl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~v--~~~~ 132 (548)
T PRK08978 64 VGVCIATSGPGATNLITGLADA----LL--DSVP-VVAITGQVSSPLIG--TDAFQEIDVLGLSLACTKHSFLV--QSLE 132 (548)
T ss_pred CEEEEECCCCcHHHHHHHHHHH----hh--cCCC-EEEEecCCCccccC--CCCCcccchhccccCceeeEEEE--CCHH
Confidence 6678888888887444444433 33 6889 99997532211000 00000112233444444445666 4899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+..+++.|+..++.+. |||.|++
T Consensus 133 ~~~~~i~~A~~~A~~~~~GPV~l~i 157 (548)
T PRK08978 133 ELPEIMAEAFEIASSGRPGPVLVDI 157 (548)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEec
Confidence 99999999999998875 9999998
No 199
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=47.21 E-value=92 Score=37.76 Aligned_cols=91 Identities=9% Similarity=-0.075 Sum_probs=55.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCC--cccccccccCCcEEEEcCCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTL--YCTDIGKIIEAPVFHVNGDD 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~--~~sd~Ak~~giP~~~VdG~D 369 (887)
..++++..|=|++..=.-++|+ .. -++| +|+|.-.-... ........ +..++++.+---...| ++
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A----~~--~~~P-vl~i~G~~~~~----~~~~~~~q~~d~~~i~~~~tk~~~~v--~~ 135 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITA----YW--DSSP-VIAITGQVPRS----VMGKMAFQEADAMGVFENVTKYVIGI--KR 135 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHH----Hh--hCCC-EEEEecCCCcc----ccCCCCccccchhhhhhccceeEEEe--CC
Confidence 5567777888888433333333 34 7889 99997532211 00111111 1122333333334444 78
Q ss_pred HHHHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 370 PESVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
++.+..++..|+..+..+. |||+|++
T Consensus 136 ~~~~~~~l~~A~~~A~~~~~GPV~l~i 162 (572)
T PRK06456 136 IDEIPQWIKNAFYIATTGRPGPVVIDI 162 (572)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEec
Confidence 9999999999999999876 9999998
No 200
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=47.18 E-value=78 Score=38.55 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=56.3
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..- -+++..-.-++| +|+|+-.-... ....+..-.....++.+.+-.-..+| .+++
T Consensus 78 ~gv~~~t~GpG~~N~~------~gla~A~~~~~P-vl~I~G~~~~~--~~~~~~~q~~d~~~l~~~itk~~~~v--~~~~ 146 (570)
T PRK06725 78 VGVVFATSGPGATNLV------TGLADAYMDSIP-LVVITGQVATP--LIGKDGFQEADVVGITVPVTKHNYQV--RDVN 146 (570)
T ss_pred CeEEEECCCccHHHHH------HHHHHHhhcCcC-EEEEecCCCcc--cccCCCCcccchhhhhhccceeEEEc--CCHH
Confidence 5677777788877333 333333115899 99998532211 00001000112223444444445556 4899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+...++.|+..++.+. |||+|++
T Consensus 147 ~i~~~l~~A~~~A~s~~~GPV~l~i 171 (570)
T PRK06725 147 QLSRIVQEAFYIAESGRPGPVLIDI 171 (570)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEcc
Confidence 99999999999999886 9999998
No 201
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=45.91 E-value=94 Score=37.91 Aligned_cols=91 Identities=11% Similarity=-0.059 Sum_probs=54.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCC--cccccccccCCcEEEEcCCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTL--YCTDIGKIIEAPVFHVNGDD 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~--~~sd~Ak~~giP~~~VdG~D 369 (887)
-.++++..|=|++..-+-++++. . -++| +|+|+-.=. +.......-. ...++++.+---..+ =++
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~----~--~~~P-vl~I~g~~~----~~~~~~~~~q~~d~~~l~~~~tk~~~~--i~~ 135 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAY----W--AHTP-VVLVTPQAG----TKTIGQGGFQEAEQMPMFEDMTKYQEE--VRD 135 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHh----h--cCCC-EEEEeCCCC----cccCCCCCCcccchhhhhhhheeEEEE--CCC
Confidence 56777777888884443333332 3 7889 999982111 0000000001 111233322222333 368
Q ss_pred HHHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 370 PESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
++.+..+++.|+..++.+.|||+|++
T Consensus 136 ~~~~~~~i~rA~~~A~~~~GPV~i~i 161 (588)
T PRK07525 136 PSRMAEVLNRVFDKAKRESGPAQINI 161 (588)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 89999999999999999999999998
No 202
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=44.72 E-value=1.2e+02 Score=36.71 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=57.6
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++|+ .. -++| +|+|+-.=.. .....+..-..+..++.+.+-.-..+| ++++
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A----~~--~~~P-vl~i~g~~~~--~~~~~~~~q~~d~~~~~~~~tk~~~~v--~~~~ 133 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATA----YM--DSIP-MVVFTGQVPT--SLIGSDAFQEADILGITMPITKHSFQV--KSAE 133 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHH----Hh--cCCC-EEEEecCCCc--cccCCCCCcccChhhhhcCccceeEEe--CCHH
Confidence 5677777788877443333333 34 6889 9999853111 000000000112233455555556666 5799
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
++..++..|+..+..+. |||.|++
T Consensus 134 ~~~~~v~~A~~~A~~~~~GPV~i~i 158 (558)
T TIGR00118 134 DIPRIIKEAFHIATTGRPGPVLVDL 158 (558)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 99999999999998885 8999998
No 203
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.54 E-value=91 Score=37.87 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=56.6
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++++ .. -++| +|+|+-.=... ....+..-..+...+.+.+-.-...| ++++
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A----~~--~~~P-vl~i~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~ 136 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATA----YM--DSIP-LVVLSGQVATS--LIGYDAFQECDMVGISRPVVKHSFLV--KQTE 136 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHH----hh--cCCC-EEEEECCCChh--ccCCCCCceecHHHHhhcccceEEEe--CCHH
Confidence 5677777888887333333332 33 6889 99997542211 10010000011222344443445556 4899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+..+++.|+..++.+. |||+|++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPv~l~i 161 (574)
T PRK07979 137 DIPQVLKKAFWLAASGRPGPVVVDL 161 (574)
T ss_pred HHHHHHHHHHHHHccCCCCcEEEEc
Confidence 99999999999999886 9999998
No 204
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=44.01 E-value=1.1e+02 Score=37.10 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=56.1
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++| |.. -++| +|+|.-.-..... ..+..-..+..++.+.+---..+| ++++
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~----A~~--~~~P-vl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v--~~~~ 145 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIAD----ARL--DSIP-LVCITGQVPASMI--GTDAFQEVDTYGISIPITKHNYLV--RDIE 145 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHH----HHh--cCCC-EEEEeccCCcccc--cCCCccccchhhhhhccceEEEEc--CCHH
Confidence 567777778888733333333 445 7899 9999742221100 000000111222333333334455 4899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+...+..|+..+..+. |||.|++=
T Consensus 146 ~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 146 ELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999998884 99999983
No 205
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=43.59 E-value=1e+02 Score=37.86 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=54.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++|+ .. -++| +|+|+-.-.. +....+.....+..++.+.+---..+| ++++
T Consensus 95 ~gv~~~t~GPG~~N~l~gl~~A----~~--~~~P-llvI~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~s~~v--~~~~ 163 (612)
T PRK07789 95 VGVCMATSGPGATNLVTPIADA----NM--DSVP-VVAITGQVGR--GLIGTDAFQEADIVGITMPITKHNFLV--TDAD 163 (612)
T ss_pred CEEEEECCCccHHHHHHHHHHH----hh--cCCC-EEEEecCCCc--cccCCCcCcccchhhhhhcceeEEEEc--CCHH
Confidence 5677777788877433333333 33 6789 9999853221 100000000112222333333333444 5899
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKF-KKDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~-~~PvlIe~v 396 (887)
.+..++..|+..++.+ .|||+|++=
T Consensus 164 ~i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 164 DIPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 9999999999999887 499999883
No 206
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=43.11 E-value=97 Score=37.76 Aligned_cols=94 Identities=15% Similarity=0.050 Sum_probs=55.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++|+. . -++| +|+|+-.=.. +.......-..+..++++.+-.-..+| ++++
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~----~--~~~P-vl~I~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~s~~v--~~~~ 132 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAY----A--DSSP-VIALTGQVPT--KLIGNDAFQEIDALGIFMPITKHNFQI--KKPE 132 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHH----h--cCCC-EEEEeCCCCc--cccCCCCCccccHhhHHhhhcceEEec--CCHH
Confidence 56777777888874444444433 3 7889 9999742111 000000000012233444444444455 6788
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+..++..|+..+..+. |||.|++=
T Consensus 133 ~i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 133 EIPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 99999999999988875 89999983
No 207
>PLN02470 acetolactate synthase
Probab=42.67 E-value=99 Score=37.70 Aligned_cols=94 Identities=12% Similarity=0.004 Sum_probs=56.1
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..=.-++| |-. -++| +|+|.-.-... ....+..-.....++.+.+---...| ++++
T Consensus 77 ~gv~~~t~GPG~~N~l~gia~----A~~--~~~P-vl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~ 145 (585)
T PLN02470 77 VGVCIATSGPGATNLVTGLAD----ALL--DSVP-LVAITGQVPRR--MIGTDAFQETPIVEVTRSITKHNYLV--MDVE 145 (585)
T ss_pred CEEEEECCCccHHHHHHHHHH----HHh--cCCc-EEEEecCCChh--hcCCCcCcccchhhhhhhheEEEEEc--CCHH
Confidence 567778888888733222222 333 7889 99997532211 00000000111223333333334455 5899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+..+++.|+..+..++ |||+|++=
T Consensus 146 ~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 146 DIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 99999999999999886 99999993
No 208
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.27 E-value=88 Score=38.02 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=54.1
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++++. . -++| +|+|.-.-.. +....+.....+...+++.+---..+|+ +|+
T Consensus 68 ~gv~~~t~GpG~~n~l~gia~A~----~--~~~P-vl~i~G~~~~--~~~~~~~~q~~d~~~~~~~itk~~~~v~--~~~ 136 (572)
T PRK08979 68 VGVVLVTSGPGATNTITGIATAY----M--DSIP-MVVLSGQVPS--NLIGNDAFQECDMIGISRPVVKHSFLVK--DAE 136 (572)
T ss_pred CeEEEECCCchHhHHHHHHHHHh----h--cCCC-EEEEecCCCc--cccCCCCCcccchhHHhhhceeEEEecC--CHH
Confidence 56777777888774333333332 3 6889 9998742211 0000000000112223333333344444 899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+...++.|+..++.+. |||+|++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~i 161 (572)
T PRK08979 137 DIPEIIKKAFYIASTGRPGPVVIDL 161 (572)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEec
Confidence 99999999999998876 9999998
No 209
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.05 E-value=2.2e+02 Score=34.81 Aligned_cols=90 Identities=11% Similarity=0.016 Sum_probs=50.4
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccC---CcccccccccCCcEEEEcCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRST---LYCTDIGKIIEAPVFHVNGD 368 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss---~~~sd~Ak~~giP~~~VdG~ 368 (887)
-.++++..|=|++ +-.-.++..-.-++| +|+|.-. +......+.. .+..++.+.+---..+| .
T Consensus 85 ~gv~~~t~GpG~~------N~l~gl~~A~~~~~P-vl~i~G~-----~~~~~~~~~~~q~~d~~~l~~~itk~~~~v--~ 150 (587)
T PRK06965 85 VGVALVTSGPGVT------NAVTGIATAYMDSIP-MVVISGQ-----VPTAAIGQDAFQECDTVGITRPIVKHNFLV--K 150 (587)
T ss_pred CeEEEECCCccHH------HHHHHHHHHhhcCCC-EEEEecC-----CCccccCCCCcccccHHHHhcCCcceeEEe--C
Confidence 4566666666666 222333333226889 8888621 1111111111 11112223222233344 4
Q ss_pred CHHHHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 369 DPESVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 369 D~~AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
+++++...+..|+..++.++ |||+|++
T Consensus 151 ~~~~~~~~i~~A~~~A~~~~~GPV~l~i 178 (587)
T PRK06965 151 DVRDLAETVKKAFYIARTGRPGPVVVDI 178 (587)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 88999999999999999884 9999998
No 210
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.65 E-value=1.2e+02 Score=36.82 Aligned_cols=91 Identities=11% Similarity=-0.016 Sum_probs=52.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCC--cccccccccCCcEEEEcCCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTL--YCTDIGKIIEAPVFHVNGDD 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~--~~sd~Ak~~giP~~~VdG~D 369 (887)
-.++++..|=|.+..-+-++++ .. -++| +|+|.-. .. +......... +...+.+.+---..+| ++
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A----~~--~~~P-vl~i~G~--~~--~~~~~~~~~q~~d~~~~~~~~tk~s~~v--~~ 133 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATA----YM--DSIP-LVLISGQ--VP--NSLIGTDAFQEIDAVGISRPCVKHNYLV--KS 133 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHH----hh--cCCC-EEEEecC--CC--ccccCCCCCcccchhhhhhcccceEEEc--CC
Confidence 5677777777777333333333 23 7889 9988741 11 1100000011 1111222222222333 89
Q ss_pred HHHHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 370 PESVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
|+.+..+++.|+..++.+. |||.|++
T Consensus 134 ~~~i~~~l~~A~~~a~s~~~GPV~l~i 160 (563)
T PRK08527 134 IEELPRILKEAFYIARSGRPGPVHIDI 160 (563)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 9999999999999998877 8999998
No 211
>PRK08611 pyruvate oxidase; Provisional
Probab=41.46 E-value=1.4e+02 Score=36.43 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=55.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-+ --|.. -++| +|+|+-.-...-......| ..+..++.+.+ --...--++|+
T Consensus 69 ~gv~~~t~GPG~~N~l~gl----a~A~~--~~~P-vl~ItG~~~~~~~~~~~~q--~~d~~~l~~~i--tk~~~~v~~~~ 137 (576)
T PRK08611 69 IGVCLSIGGPGAIHLLNGL----YDAKM--DHVP-VLALAGQVTSDLLGTDFFQ--EVNLEKMFEDV--AVYNHQIMSAE 137 (576)
T ss_pred ceEEEECCCCcHHHHHHHH----HHHhh--cCCC-EEEEecCCcccccCCCCcc--ccCHHHHhhcc--cceeEEeCCHH
Confidence 5677777787777322222 22334 7889 9999865443211110000 01122233322 22334446898
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
.+..++..|+..+....|||+|++
T Consensus 138 ~~~~~l~~A~~~A~~~~GPV~l~i 161 (576)
T PRK08611 138 NLPEIVNQAIRTAYEKKGVAVLTI 161 (576)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEe
Confidence 999999999999888899999998
No 212
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=41.40 E-value=1e+02 Score=37.18 Aligned_cols=95 Identities=8% Similarity=0.001 Sum_probs=57.0
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..=.-++ -|.. -++| +|+|+-......-..........+...+.+.+---..+|+ +++
T Consensus 66 ~gv~~~t~GPG~~N~~~gia----~A~~--~~~P-vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~ 136 (554)
T TIGR03254 66 PGVCLTVSAPGFLNGLTALA----NATT--NCFP-MIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAE 136 (554)
T ss_pred CEEEEEccCccHHhHHHHHH----HHHh--cCCC-EEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHH
Confidence 56777777888883222222 2334 7899 9999865432210000000111122334444444456666 789
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
++..++..|+..+..++ |||.|++
T Consensus 137 ~~~~~i~rA~~~A~~~~pGPV~l~i 161 (554)
T TIGR03254 137 DIGIGIARAIRTAVSGRPGGVYLDL 161 (554)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999888864 8999998
No 213
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.33 E-value=1.2e+02 Score=36.89 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=56.6
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++++ .. =++| +|+|+-.-.... ......-..+..++.+.+---..+|+ +++
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A----~~--~~~P-vl~i~G~~~~~~--~~~~~~q~~d~~~l~~~itk~s~~v~--~~~ 136 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATA----YM--DSIP-MVVLSGQVPSTL--IGEDAFQETDMVGISRPIVKHSFMVK--HAS 136 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHH----Hh--cCCC-EEEEecCCCccc--cCCCcccccchhhhhhccceeEEEcC--CHH
Confidence 5788888888888433333333 33 6889 999985332110 00000001122223333333344554 899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+..+++.|+..++.+. |||+|++
T Consensus 137 ~~~~~~~rA~~~A~~~~~GPV~l~i 161 (574)
T PRK06466 137 EIPEIIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999998885 9999998
No 214
>PRK11269 glyoxylate carboligase; Provisional
Probab=40.23 E-value=96 Score=37.87 Aligned_cols=94 Identities=12% Similarity=-0.022 Sum_probs=54.3
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..=+-++| |.. -++| +|+|+-.-....... +.....+..++.+.+-.-..+| .+|+
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~----A~~--~~~P-vl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk~s~~v--~~~~ 137 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYS----ASA--DSIP-ILCITGQAPRARLHK--EDFQAVDIESIAKPVTKWAVTV--REPA 137 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHH----Hhh--cCCC-EEEEecCCCccccCC--CcccccChhhHhhcceeEEEEc--CCHH
Confidence 556777777777732222222 233 6889 999976433211100 0000011222333222223344 7899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+..+++.|+..++.+. |||.|++=
T Consensus 138 ~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 138 LVPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 99999999999999875 89999984
No 215
>PRK07064 hypothetical protein; Provisional
Probab=40.12 E-value=1.4e+02 Score=35.85 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=55.7
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcc-----cCCcccccccccCCcEEEEc
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLR-----STLYCTDIGKIIEAPVFHVN 366 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~r-----ss~~~sd~Ak~~giP~~~Vd 366 (887)
-.++++..|=|++..-.-++| |.. -++| +|+|+-+=. +....+. ...+..++++.+---...|
T Consensus 67 ~~v~~~t~GpG~~N~~~~i~~----A~~--~~~P-vl~i~g~~~----~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v- 134 (544)
T PRK07064 67 LGVALTSTGTGAGNAAGALVE----ALT--AGTP-LLHITGQIE----TPYLDQDLGYIHEAPDQLTMLRAVSKAAFRV- 134 (544)
T ss_pred CeEEEeCCCCcHHHHHHHHHH----HHh--cCCC-EEEEeCCCC----cccccCCCcccccccCHHHHhhhhcceEEEe-
Confidence 466777667777733333333 334 7889 999986411 1111110 0112333444443345555
Q ss_pred CCCHHHHHHHHHHHHHHHHcc-CCcEEEEEE
Q psy9579 367 GDDPESVILVTKIAVEYRMKF-KKDCIINII 396 (887)
Q Consensus 367 G~D~~AV~~a~~~A~e~~r~~-~~PvlIe~v 396 (887)
++++++..++..|+..+..+ .|||+|++=
T Consensus 135 -~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 135 -RSAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred -CCHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 68899999999999998887 799999883
No 216
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=39.83 E-value=1e+02 Score=37.51 Aligned_cols=94 Identities=10% Similarity=-0.069 Sum_probs=53.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++-.- -+|--|-. -++| +|+|+-.=.. +....+.....+..++.+.+---...| ++|+
T Consensus 75 ~gv~~~t~GpG~~N~~----~gl~~A~~--~~~P-vl~I~G~~~~--~~~~~~~~Q~~d~~~l~~~vtk~~~~v--~~~~ 143 (578)
T PRK06112 75 VAVVTAQNGPAATLLV----APLAEALK--ASVP-IVALVQDVNR--DQTDRNAFQELDHIALFQSCTKWVRRV--TVAE 143 (578)
T ss_pred CEEEEeCCCCcHHHHH----HHHHHHhh--cCCC-EEEEecCCcc--ccCCCCCccccChhhhhccccceEEEe--CCHH
Confidence 5667766666665222 22222444 7899 9999843111 000000000112223333333333334 6799
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+...+..|+..++.+. |||+|++=
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 144 RIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 99999999999998885 89999983
No 217
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=38.87 E-value=1.3e+02 Score=37.02 Aligned_cols=94 Identities=12% Similarity=-0.054 Sum_probs=52.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-+++ |.. -++| +|+|+-+- ..+..-.+..-..+...+.+.+ -....-=++++
T Consensus 86 ~gv~~~t~GPG~~n~l~gl~~----A~~--d~~P-vl~i~G~~--~~~~~~~~~~Qe~d~~~~~~~v--tk~~~~v~~~~ 154 (616)
T PRK07418 86 VGVCFGTSGPGATNLVTGIAT----AQM--DSVP-MVVITGQV--PRPAIGTDAFQETDIFGITLPI--VKHSYVVRDPS 154 (616)
T ss_pred CeEEEECCCccHHHHHHHHHH----HHh--cCCC-EEEEecCC--CccccCCCCcccccHHHHhhhc--ceeEEEeCCHH
Confidence 567777777777732222222 334 7889 99998631 1111000000001112222211 11222235899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+..++..|+..+..++ |||+|++=
T Consensus 155 ~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 155 DMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 99999999999999887 99999873
No 218
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=38.57 E-value=1e+02 Score=32.43 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=59.2
Q ss_pred eEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHH
Q psy9579 293 VLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPES 372 (887)
Q Consensus 293 ~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~A 372 (887)
.|+|++-|+|+. - +++--+-..+...-+++.+|.|+. + ..+.++|+..|+|+++++-.+...
T Consensus 3 ki~vl~sg~gs~-~-----~~ll~~~~~~~~~~~I~~vvs~~~--------~----~~~~~~a~~~gIp~~~~~~~~~~~ 64 (200)
T PRK05647 3 RIVVLASGNGSN-L-----QAIIDACAAGQLPAEIVAVISDRP--------D----AYGLERAEAAGIPTFVLDHKDFPS 64 (200)
T ss_pred eEEEEEcCCChh-H-----HHHHHHHHcCCCCcEEEEEEecCc--------c----chHHHHHHHcCCCEEEECccccCc
Confidence 378888877777 3 333222222221122566667763 1 135678899999999987554411
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEEee-ecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHH
Q psy9579 373 VILVTKIAVEYRMKFKKDCIINIICF-RKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYS 431 (887)
Q Consensus 373 V~~a~~~A~e~~r~~~~PvlIe~vtY-R~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~ 431 (887)
--..-....+..++++-|++| +.+| ++-+-.-.+.| .+.-+.-|+.++..|+
T Consensus 65 ~~~~~~~~~~~l~~~~~D~iv-~~~~~~ii~~~~l~~~------~~~~iNiHpslLP~yr 117 (200)
T PRK05647 65 REAFDAALVEALDAYQPDLVV-LAGFMRILGPTFVSAY------EGRIINIHPSLLPSFP 117 (200)
T ss_pred hhHhHHHHHHHHHHhCcCEEE-hHHhhhhCCHHHHhhc------cCCEEEEeCccccCCC
Confidence 000111224555666666544 4555 33333222322 1222456777777775
No 219
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.65 E-value=1.2e+02 Score=37.18 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=55.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcc--cccccccCCcEEEEcCCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYC--TDIGKIIEAPVFHVNGDD 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~--sd~Ak~~giP~~~VdG~D 369 (887)
-.++++..|=|++..-+-++++. . -++| +|+|.-.-... ......-..+ ..+++.+---...| ++
T Consensus 75 ~gv~~~t~GPG~~N~l~gia~A~----~--~~~P-vl~i~G~~~~~----~~~~~~~q~~d~~~l~~~vtk~~~~v--~~ 141 (595)
T PRK09107 75 PGVVLVTSGPGATNAVTPLQDAL----M--DSIP-LVCITGQVPTH----LIGSDAFQECDTVGITRPCTKHNWLV--KD 141 (595)
T ss_pred CEEEEECCCccHhHHHHHHHHHh----h--cCCC-EEEEEcCCChh----hcCCCCCcccchhhhhhhheEEEEEe--CC
Confidence 56777778888885444444443 4 7899 99987543221 1111111111 11222222222333 78
Q ss_pred HHHHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 370 PESVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
++.+..++..|+..++.+. |||+|++
T Consensus 142 ~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 142 VNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 9999999999999999985 9999998
No 220
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=37.53 E-value=44 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy9579 426 IRELYSNKLKIQKILTKNESENMIKEFN 453 (887)
Q Consensus 426 pi~~y~~~Li~~Gi~t~~e~~~i~~~~~ 453 (887)
++..+.+ |.++|++|++|.++.++++.
T Consensus 4 ~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 4455544 66899999999998887653
No 221
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=37.15 E-value=1.2e+02 Score=35.10 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=71.4
Q ss_pred cchHHHHHHHHhhccC-CCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCC-----CccccC-
Q psy9579 613 LSEEAILGFEYGFSTA-SPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQ-----GPEHSS- 685 (887)
Q Consensus 613 LsE~ailG~~~G~a~~-~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~-----GpeHSs- 685 (887)
-.|..-+|.+.||.|. |.++ ++=+|=--+-|. ++-+.|- ....-+.-+++|+ .||.|. -|+|.-
T Consensus 33 ~~E~~av~iaaG~~latG~~~--~v~mQnSGlGn~----vN~l~SL-~~~~~y~iP~l~~--i~~RG~~g~~depqh~~~ 103 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLATGKRA--AVYMQNSGLGNA----VNPLTSL-ADTEVYDIPLLLI--VGWRGEPGVHDEPQHVKQ 103 (361)
T ss_pred CCchHHHHHHHHHHHhcCCcc--EEEEecCchhhh----hhHHHhh-ccccccCcCeeEE--EecCCCCCCCCCchhhHH
Confidence 3499999999999998 8774 566787777763 5554433 1233444455544 455543 277754
Q ss_pred -chHHHHHhhhcCCCcEEEc-CCCHhHHHHHHHHHHhC--CCCCcEEEEcccccc
Q psy9579 686 -ARLERFLQLCANNNIQIVQ-PTSASQIFHLLRYQIIR--PIRKPLIIITPKSLL 736 (887)
Q Consensus 686 -~r~Er~lq~~~~~nl~V~~-pstpa~~~hlLr~q~~~--~~r~Plv~~~pK~Ll 736 (887)
.-.+..|..+. +.... |.++.+....|.+++.. .-.+|+.++-+|..+
T Consensus 104 G~~t~~lL~~~~---i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 104 GRITLSLLDALE---IPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred hHHHHHHHHHcC---CCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 22478888774 44433 46677766666655531 224999999998877
No 222
>PRK12474 hypothetical protein; Provisional
Probab=37.01 E-value=1.4e+02 Score=35.70 Aligned_cols=93 Identities=10% Similarity=0.034 Sum_probs=54.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++ -|.. -++| +|+|+-.....-.. .+..-..+...+++.+-- ...-=++++
T Consensus 69 ~gv~~~t~GpG~~N~~~gl~----~A~~--d~~P-vl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk--~~~~v~~~~ 137 (518)
T PRK12474 69 PAVTLLHLGPGLANGLANLH----NARR--AASP-IVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSR--WVHRSASAG 137 (518)
T ss_pred CEEEEEccchhHhHhHHHHH----HHhh--cCCC-EEEEeccCchhhcC--CCCccccCHHHhhhcccc--eeeecCCHH
Confidence 56777788888772222222 2334 7889 99998643321110 000000122223332221 222347899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+..+++.|+..+.++. |||+|++
T Consensus 138 ~~~~~i~rA~~~A~~~~~GPV~l~i 162 (518)
T PRK12474 138 AVDSDVARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 99999999999988886 9999998
No 223
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=36.48 E-value=1.1e+02 Score=37.51 Aligned_cols=94 Identities=11% Similarity=-0.029 Sum_probs=54.6
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++ +=.-.++..-.-++| +|+|+-.-....... ...-..+..++.+.+-.-..+| .+++
T Consensus 68 ~gv~~~t~GpG~~------N~~~gla~A~~~~~P-vl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk~~~~v--~~~~ 136 (588)
T TIGR01504 68 IGVCIGTSGPAGT------DMITGLYSASADSIP-ILCITGQAPRARLHK--EDFQAVDIAAIAKPVSKMAVTV--REAA 136 (588)
T ss_pred eEEEEECCCccHH------HHHHHHHHHhhcCCC-EEEEecCCCccccCC--CcccccCHHHHhhhhceEEEEc--CCHH
Confidence 4566666677776 222233333227899 999985333211100 0000112223333333334455 4899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+..+++.|+..++.+. |||+|++=
T Consensus 137 ~i~~~i~~A~~~A~~~~~GPV~l~iP 162 (588)
T TIGR01504 137 LVPRVLQQAFHLMRSGRPGPVLIDLP 162 (588)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEEeC
Confidence 99999999999998876 89999983
No 224
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=36.26 E-value=1.6e+02 Score=35.66 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=56.6
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..=.-+++ |.. -++| +|+|+-.-....--.........+..++.+.+---..+| ++++
T Consensus 73 ~gv~~~t~GPG~~N~l~gl~~----A~~--~~~P-vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~ 143 (569)
T PRK09259 73 PGVCLTVSAPGFLNGLTALAN----ATT--NCFP-MIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRV--NRAE 143 (569)
T ss_pred CEEEEEcCCccHHHHHHHHHH----HHh--cCCC-EEEEEccCCcccccccCCCccccchhhhhhhheeeeEEc--CCHH
Confidence 567777778888733333333 334 7899 999986432110000000000112223444444445566 4799
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKF-KKDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~-~~PvlIe~v 396 (887)
.+..++..|+..+..+ .|||+|++=
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 144 DIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred HHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 9999999999999887 489999983
No 225
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=35.55 E-value=2.8e+02 Score=27.18 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred eEEeccccchHHHHHHHHhhccCCCCCceEEeeecc-ccccchhHHHHHHHhhHHHHhcCccCcEEEecc---cCCCCCc
Q psy9579 606 FHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFG-DFANGAQVIIDQFISSSEEKWGRISGLTLMLPH---GYEGQGP 681 (887)
Q Consensus 606 ~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFg-DF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~---G~~g~Gp 681 (887)
++++.+. +|.+..+.+.||+..+.+ ..+.=.+.| -|.|. +.-+. ++.+. ..+|+++.-. ...+.+.
T Consensus 35 ~~~i~~~-~E~~A~~~A~g~~~~~~~-~~v~~~~~gpG~~n~----~~~l~---~A~~~-~~Pll~i~~~~~~~~~~~~~ 104 (155)
T cd07035 35 IRYILVR-HEQGAVGMADGYARATGK-PGVVLVTSGPGLTNA----VTGLA---NAYLD-SIPLLVITGQRPTAGEGRGA 104 (155)
T ss_pred CEEEEeC-CHHHHHHHHHHHHHHHCC-CEEEEEcCCCcHHHH----HHHHH---HHHhh-CCCEEEEeCCCccccccCCc
Confidence 5666554 999999999999998655 245555532 33332 44433 23333 6788887642 2233332
Q ss_pred cccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCC--C-CCcEEEEcc
Q psy9579 682 EHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRP--I-RKPLIIITP 732 (887)
Q Consensus 682 eHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~--~-r~Plv~~~p 732 (887)
.+.-...+-+-+.| .+ ...+++++++...++++++.- . +.|+.+.-|
T Consensus 105 ~q~~d~~~~~~~~~---~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 105 FQEIDQVALFRPIT---KW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccccCHHHHHHHHh---ce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 22222233333333 33 556678999999999998732 2 569888655
No 226
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=34.86 E-value=1.7e+02 Score=35.35 Aligned_cols=93 Identities=9% Similarity=0.004 Sum_probs=52.7
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++ +-.-.++..-.-++| +|+|.-.=... ....+.....+..++.+.+=--...| ++++
T Consensus 72 ~gv~~~t~GpG~~------N~~~gi~~A~~~~~P-vl~i~g~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~ 140 (557)
T PRK08199 72 PGICFVTRGPGAT------NASIGVHTAFQDSTP-MILFVGQVARD--FREREAFQEIDYRRMFGPMAKWVAEI--DDAA 140 (557)
T ss_pred CEEEEeCCCccHH------HHHHHHHHHhhcCCC-EEEEecCCccc--cCCCCcccccCHHHhhhhhhceeeec--CCHH
Confidence 5677777777766 333344443337899 99997421110 00000000001111222211122334 7999
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+..++..|+..+..+. |||.|++
T Consensus 141 ~~~~~~~~A~~~A~~~~~GPV~l~i 165 (557)
T PRK08199 141 RIPELVSRAFHVATSGRPGPVVLAL 165 (557)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999884 8999988
No 227
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=34.75 E-value=3.4e+02 Score=28.75 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=65.4
Q ss_pred EcCCCHHHHHHHHHHHHHHHH-ccCCcEEEEEEeeecC-------------------CCCCCCCCCCCCh-----HhhHH
Q psy9579 365 VNGDDPESVILVTKIAVEYRM-KFKKDCIINIICFRKL-------------------GHNEQDTPSLTQP-----LMYKK 419 (887)
Q Consensus 365 VdG~D~~AV~~a~~~A~e~~r-~~~~PvlIe~vtYR~~-------------------GHne~DdP~~tqp-----~~Yr~ 419 (887)
..+.|.+|.+.+-.++.+++. +|-.-|++|.-.||.+ .||+.-=|.+-+= ..|..
T Consensus 74 ~~~~N~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL~fPh~~~~~p~~~ri~G~Hia~y~~ 153 (193)
T PRK08569 74 GDTGNTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGLEIPHGEEVLPDEDRIRGEHIAEYAE 153 (193)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCCcCCCCCCcCCCccccccchHHHHHH
Confidence 468999999999888887775 5667899999999998 7887655543211 12333
Q ss_pred HhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q psy9579 420 IFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGK 460 (887)
Q Consensus 420 i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~ 460 (887)
.-+..|.-..|.++| +.| ++.+++.++-+++.+.+.+++
T Consensus 154 ~l~~e~y~~~Fs~y~-~~g-~~~~~l~~~~~~~~~~i~~~~ 192 (193)
T PRK08569 154 SLKEENYKKQFSKYL-ERG-LDPEDLPEHFEEVKEKILEEY 192 (193)
T ss_pred HHhhhHHHHHHHHHH-hcC-CCHHHHHHHHHHHHHHHHHhc
Confidence 223445555666665 555 788888888888887776653
No 228
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.28 E-value=1.8e+02 Score=35.27 Aligned_cols=94 Identities=12% Similarity=0.013 Sum_probs=55.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-+-++|+. . -++| +|+|.-.-.... ......-..+...+.+.+-.-..+| ++++
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~----~--~~~P-vlvi~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~s~~v--~~~~ 136 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAY----T--DSVP-LVILSGQVPSNL--IGTDAFQECDMLGISRPVVKHSFIV--KNAE 136 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHh----h--cCCC-EEEEecCCCccc--cCCCcccccchhhhhhcccceEEEe--CCHH
Confidence 56777777888774444444433 3 6889 999874322110 0000000011222333333334455 5889
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+...+..|+..+..+. |||+|++=
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 137 DIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 99999999998888864 99999983
No 229
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=39 Score=32.95 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEech----HHHHHHHHHHHcCCCcEEE
Q psy9579 723 IRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGK----IYYDLFNFRKKKNKNDVVI 797 (887)
Q Consensus 723 ~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~----~~~~l~~~~~~~~~~~v~v 797 (887)
++++|+++-.- .+ ...++.++|+++..|.+++.. ..+|..+|+.+|. ..-++.++-++.| +.++.
T Consensus 33 h~~SlL~lpdg-v~--~W~v~~~~~Lt~e~f~~vl~~------a~~~EilliGTG~~~rf~p~~l~aal~~~g-Isve~ 101 (127)
T COG3737 33 HRGSLLVLPDG-VC--DWEVATLSDLTPEDFERVLAE------APDVEILLIGTGARLRFPPPKLRAALKAAG-ISVEP 101 (127)
T ss_pred ccccEEEecCc-cc--cccccChhhCCHHHHHHHHhc------CCCceEEEEecCccccCCCHHHHHHHHHcC-Ccccc
Confidence 45888887554 22 355677888887778887764 4567789999998 3445555555555 34443
No 230
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=33.74 E-value=2e+02 Score=34.80 Aligned_cols=93 Identities=14% Similarity=0.014 Sum_probs=52.4
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++.. .-.++..-.-++| +|+|.-.-. ....-.+.....+..++.+.+---..+| .+++
T Consensus 71 ~~v~~~t~GpG~~n~------~~gl~~A~~~~~P-vl~i~G~~~--~~~~~~~~~q~~d~~~~~~~itk~s~~v--~~~~ 139 (561)
T PRK06048 71 VGVCVATSGPGATNL------VTGIATAYMDSVP-IVALTGQVP--RSMIGNDAFQEADITGITMPITKHNYLV--QDAK 139 (561)
T ss_pred CeEEEECCCCcHHHH------HHHHHHHhhcCCC-EEEEeccCC--ccccCCCCccccchhhhccCcceEEEEe--CCHH
Confidence 566777777777732 3333333226889 999874211 1100000000112222333322223334 6889
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKF-KKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~-~~PvlIe~ 395 (887)
.+..++..|+..++.+ .|||.|++
T Consensus 140 ~i~~~i~~A~~~A~~~~~GPV~l~i 164 (561)
T PRK06048 140 DLPRIIKEAFHIASTGRPGPVLIDL 164 (561)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEec
Confidence 9999999999988887 48999998
No 231
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=33.54 E-value=1.9e+02 Score=35.39 Aligned_cols=92 Identities=12% Similarity=-0.023 Sum_probs=53.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC--CcccCCcccccccccCCcEEEEcCCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN--DLRSTLYCTDIGKIIEAPVFHVNGDD 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~--~~rss~~~sd~Ak~~giP~~~VdG~D 369 (887)
-.++++..|=|++..-.-+++ |.. =++| +|+|+-.=. +... +.....+...+.+.+--...+| ++
T Consensus 77 ~gv~~~t~GPG~~N~l~gl~~----A~~--~~~P-vl~I~G~~~----~~~~~~~~~q~~d~~~~~~~~tk~~~~v--~~ 143 (585)
T CHL00099 77 VGVCFATSGPGATNLVTGIAT----AQM--DSVP-LLVITGQVG----RAFIGTDAFQEVDIFGITLPIVKHSYVV--RD 143 (585)
T ss_pred cEEEEECCCCcHHHHHHHHHH----Hhh--cCCC-EEEEecCCC----ccccCCCCccccchhhhhcCceeEEEEe--CC
Confidence 567777777777733333333 334 6889 999975311 1100 0000011222333333334555 48
Q ss_pred HHHHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 370 PESVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
++.+..+++.|+..++.+. |||+|++=
T Consensus 144 ~~~i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 144 ARDISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred HHHHHHHHHHHHHHHccCCCCeEEEecC
Confidence 9999999999999988775 89999983
No 232
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=31.97 E-value=2.3e+02 Score=34.40 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=54.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++. -.-.++.--.=++| +|+|.-.-... ....+..-.....++.+.+-.-..+| ++++
T Consensus 74 ~gv~~~t~GPG~~n------~~~gla~A~~~~~P-vl~i~G~~~~~--~~~~~~~q~~d~~~~~~~itk~s~~v--~~~~ 142 (566)
T PRK07282 74 LGVAVVTSGPGATN------AITGIADAMSDSVP-LLVFTGQVARA--GIGKDAFQEADIVGITMPITKYNYQI--RETA 142 (566)
T ss_pred CeEEEECCCccHHH------HHHHHHHHhhcCCC-EEEEecccccc--cCCCCCccccChhchhcCCCceeEEc--CCHH
Confidence 55777777777773 22333333115899 99998542211 00000000011222333333334455 4899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
.+..++..|+..++.+. |||+|++
T Consensus 143 ~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 143 DIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 99999999999999885 9999998
No 233
>KOG4166|consensus
Probab=30.62 E-value=1.8e+02 Score=34.27 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=80.8
Q ss_pred hCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCc-eeEE-EeecCCCcccccccc-cchhHHHHHhhccCCCCC
Q psy9579 215 LGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGG-VIHL-SLAFNPSHLEIINPV-VEGSAKARMERRDDKFGT 291 (887)
Q Consensus 215 ~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg-~~hl-~l~~npShle~v~Pv-a~G~A~A~q~~~~~~~~~ 291 (887)
.|+.-.+||.|+|.+..- +--+||- || .+.+ --..+.||...|.|- -.|+..|.+-+.. ..++
T Consensus 89 vg~tGg~If~emm~rqnV-------~tVFgYP------GGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR-~sgK 154 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNV-------ETVFGYP------GGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYAR-SSGK 154 (675)
T ss_pred cCCchhHHHHHHHHhcCC-------ceEeecC------CcceeehHhhhhcCccccccccccccccchhhhhhhh-hcCC
Confidence 356677888898877642 1122222 22 2211 012456666666663 2233333332211 1235
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc---eeccCCCCcccCCcccccccccCCcEEEEcCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI---GFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGD 368 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~---g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~ 368 (887)
..|+++.-|-||+ + +-.-|.=|-. -++| .|+.--|+ +|.|+.- ....+-.+. -.+--..|==.
T Consensus 155 PGvvlvTSGPGAT-N---vvtp~ADAla--Dg~P---lVvftGQVptsaIGtDAF---QEadiVgis--RScTKwNvmVk 220 (675)
T KOG4166|consen 155 PGVVLVTSGPGAT-N---VVTPLADALA--DGVP---LVVFTGQVPTSAIGTDAF---QEADIVGIS--RSCTKWNVMVK 220 (675)
T ss_pred CcEEEEecCCCcc-c---ccchhhHHhh--cCCc---EEEEecccchhhcccchh---ccCCeeeee--eccceeheeee
Confidence 7899999999999 3 2223333333 4556 33434444 2333211 111111111 11112234457
Q ss_pred CHHHHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 369 DPESVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 369 D~~AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
|+++.-+-..+|++.+-.|+ |||++|+
T Consensus 221 dVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 221 DVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred cHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 99999999999999998875 8999988
No 234
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=30.33 E-value=2.9e+02 Score=33.45 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=56.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCccccccccc-CCcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKII-EAPVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~-giP~~~VdG~D~ 370 (887)
-.++++..|=|++..-.-++|+ .. =++| +|+|+-.-... .....+...+ |....+ .+--...--.+|
T Consensus 65 pgv~~~t~GPG~~N~l~~l~~A----~~--~~~P-vl~i~G~~~~~----~~~~~~~q~~-d~~~l~~~vtk~~~~v~~~ 132 (549)
T PRK06457 65 PSACMGTSGPGSIHLLNGLYDA----KM--DHAP-VIALTGQVESD----MIGHDYFQEV-NLTKLFDDVAVFNQILINP 132 (549)
T ss_pred CeEEEeCCCCchhhhHHHHHHH----Hh--cCCC-EEEEecCCCcc----ccCCCccccc-chhhhhccceeEEEEeCCH
Confidence 5677777788888433333333 34 6789 99998642211 1011111111 222222 223345556788
Q ss_pred HHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
+.+..+++.|+..+....|||+|++=
T Consensus 133 ~~~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 133 ENAEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 88999999999888888999999983
No 235
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=28.46 E-value=1e+02 Score=34.54 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=46.1
Q ss_pred cccccccccCCcEEEEc---CCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCC
Q psy9579 350 YCTDIGKIIEAPVFHVN---GDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTP 409 (887)
Q Consensus 350 ~~sd~Ak~~giP~~~Vd---G~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP 409 (887)
+++|++.+=|=|++-|| .++-+.++++++--.+-+++|+-|++ +||+..|-|
T Consensus 83 n~~DV~amGG~Pv~~vd~isa~s~d~~~ei~eglr~~a~kfgvpiv--------GGhthpd~~ 137 (324)
T COG2144 83 NVNDVAAMGGEPVGAVDAISAKSEDQAREILEGLRKGARKFGVPIV--------GGHTHPDTP 137 (324)
T ss_pred eehhhhhhCCcceEEEEeeecCCHHHHHHHHHHHHHHHHhcCCcee--------cCccCCCCC
Confidence 46889999999999998 58999999999999999999999987 899998844
No 236
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.08 E-value=1e+02 Score=31.69 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=41.6
Q ss_pred CCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 341 SPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 341 ~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
|-.|-|-+.+.+=-|++||+..+-++|++-+.|.+.++.-+ ++++||.+|+..
T Consensus 13 p~RDkRiTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv---~rwGG~F~v~~~ 65 (179)
T COG1303 13 PERDKRITTHVALTARAFGADGILLDGEEDEKVVESVEDVV---ERWGGPFFVKFG 65 (179)
T ss_pred ccccccchhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHH---HhcCCCEEEEEc
Confidence 34456666677778999999999999998777777776665 478999988775
No 237
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.04 E-value=1.3e+02 Score=37.39 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=61.2
Q ss_pred EEEEeecCcccccccHHHHHH-HHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEE-cCCCHH
Q psy9579 294 LPVLVHGDAAFSGQGVVMETL-NFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPE 371 (887)
Q Consensus 294 v~i~~hGDgA~~gqG~v~EaL-N~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~ 371 (887)
.||+.+ =+.| .+ -.++.+ +.+++ .++| ++|++..- |++ ..+..+-.-+.|+|-.-.+|.+.| -=-|+.
T Consensus 386 ~P~v~~-f~~F-l~-ra~dQI~~~~a~--~~lp-v~~v~~~~--G~~--g~dG~THq~~~dia~lr~iPnl~V~~Psd~~ 455 (641)
T PRK12571 386 KPFCAV-YSTF-LQ-RGYDQLLHDVAL--QNLP-VRFVLDRA--GLV--GADGATHAGAFDLAFLTNLPNMTVMAPRDEA 455 (641)
T ss_pred EEEEEe-hHHH-HH-HHHHHHHHHHhh--cCCC-eEEEEECC--CcC--CCCCccccccHHHHHHhcCCCCEEEeeCCHH
Confidence 455444 5678 67 667766 66889 9999 99998444 443 223222234677888888998765 567888
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
++..+.+.|+++ -.+|++|-+
T Consensus 456 e~~~~l~~a~~~---~~~P~~ir~ 476 (641)
T PRK12571 456 ELRHMLRTAAAH---DDGPIAVRF 476 (641)
T ss_pred HHHHHHHHHHhC---CCCcEEEEE
Confidence 888888888753 368999854
No 238
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=26.65 E-value=3e+02 Score=33.41 Aligned_cols=93 Identities=10% Similarity=-0.045 Sum_probs=53.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCccccccccc-CCcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKII-EAPVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~-giP~~~VdG~D~ 370 (887)
-.++++..|=|++..= -.++..-.-++| +|+|.-.-... ...+......|....+ .+--....-.++
T Consensus 79 ~gv~~~t~GPG~~N~~------~gl~~A~~~~~P-vl~ItG~~~~~-----~~~~~~~q~~d~~~l~~~~tk~~~~v~~~ 146 (571)
T PRK07710 79 PGVVIATSGPGATNVV------TGLADAMIDSLP-LVVFTGQVATS-----VIGSDAFQEADIMGITMPVTKHNYQVRKA 146 (571)
T ss_pred CeEEEECCCccHHHHH------HHHHHHhhcCCC-EEEEeccCCcc-----ccCCCCccccchhhhhhcccceEEecCCH
Confidence 5667777777776222 223333226889 99997543321 0001111111222222 223334455789
Q ss_pred HHHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
+.+...++.|+..++.+. |||.|++=
T Consensus 147 ~~~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 147 SDLPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 999999999999998885 99999984
No 239
>PRK08322 acetolactate synthase; Reviewed
Probab=26.24 E-value=2.7e+02 Score=33.43 Aligned_cols=93 Identities=10% Similarity=0.035 Sum_probs=53.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccC-CcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIE-APVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~g-iP~~~VdG~D~ 370 (887)
-.++++..|=|++..-+-++| |.. -++| +|+|+-.=... . ..+.....-|....+. +--....=++|
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~----A~~--~~~P-ll~i~g~~~~~----~-~~~~~~q~~d~~~~~~~~tk~~~~v~~~ 131 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAY----AQL--GGMP-MVAITGQKPIK----R-SKQGSFQIVDVVAMMAPLTKWTRQIVSP 131 (547)
T ss_pred CEEEEECCCccHhHHHHHHHH----Hhh--cCCC-EEEEecccccc----c-cCCCccccccHHHHhhhheeEEEEeCCH
Confidence 556676777777733333333 233 7889 99988532111 0 0111111112222221 22233444689
Q ss_pred HHHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
+.+...+..|+..+..+. |||+|++=
T Consensus 132 ~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 132 DNIPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred HHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 999999999999998875 89999983
No 240
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.12 E-value=1.6e+02 Score=33.00 Aligned_cols=112 Identities=9% Similarity=0.076 Sum_probs=64.2
Q ss_pred CceEEEEeecCcccccccHHHHHHHHhccCC-CCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCC
Q psy9579 291 TQVLPVLVHGDAAFSGQGVVMETLNFSKIDS-YNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDD 369 (887)
Q Consensus 291 ~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~-~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D 369 (887)
...++|+.-|.|+- .++|--+.-.| ++.- ++.||.||. .+.++|+.+|+|.++++-.+
T Consensus 93 ~~kiavl~Sg~g~n------l~al~~~~~~~~l~~~-i~~visn~~--------------~~~~~A~~~gIp~~~~~~~~ 151 (289)
T PRK13010 93 RPKVVIMVSKFDHC------LNDLLYRWRMGELDMD-IVGIISNHP--------------DLQPLAVQHDIPFHHLPVTP 151 (289)
T ss_pred CeEEEEEEeCCCcc------HHHHHHHHHCCCCCcE-EEEEEECCh--------------hHHHHHHHcCCCEEEeCCCc
Confidence 46788887765554 67776665433 2334 777777774 23478999999999987654
Q ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEEee-ecCCCCCCCCCCCCChHhhHHHhhCCCHHHHHH
Q psy9579 370 PESVILVTKIAVEYRMKFKKDCIINIICF-RKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYS 431 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~~PvlIe~vtY-R~~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~ 431 (887)
...-..-...++..++.+-|+++ +.+| |..+-.-.+.+ .++-+.-|+..+..|+
T Consensus 152 -~~~~~~~~~~~~~l~~~~~Dliv-lagym~il~~~~l~~~------~~~iiNiHpSlLP~f~ 206 (289)
T PRK13010 152 -DTKAQQEAQILDLIETSGAELVV-LARYMQVLSDDLSRKL------SGRAINIHHSFLPGFK 206 (289)
T ss_pred -ccccchHHHHHHHHHHhCCCEEE-EehhhhhCCHHHHhhc------cCCceeeCcccCCCCC
Confidence 11111112334556676656544 5555 33322222211 2333566888888884
No 241
>KOG2733|consensus
Probab=25.61 E-value=61 Score=37.36 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=55.4
Q ss_pred eEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCccccccc----c-----cCCcEE
Q psy9579 293 VLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGK----I-----IEAPVF 363 (887)
Q Consensus 293 ~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak----~-----~giP~~ 363 (887)
..=++++|--.|+|+=+|-|+++.-..+++++. +-. |+-.-+.++.+ . -..|++
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla------------vAG-----Rn~~KL~~vL~~~~~k~~~~ls~~~i~ 67 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA------------VAG-----RNEKKLQEVLEKVGEKTGTDLSSSVIL 67 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEE------------Eec-----CCHHHHHHHHHHHhhccCCCcccceEE
Confidence 345778888888899999999987766555544 322 11111111111 1 134589
Q ss_pred EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe-eecCCC
Q psy9579 364 HVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC-FRKLGH 403 (887)
Q Consensus 364 ~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt-YR~~GH 403 (887)
.+|++|+...-+-++.| -++|.+++ ||+||-
T Consensus 68 i~D~~n~~Sl~emak~~---------~vivN~vGPyR~hGE 99 (423)
T KOG2733|consen 68 IADSANEASLDEMAKQA---------RVIVNCVGPYRFHGE 99 (423)
T ss_pred EecCCCHHHHHHHHhhh---------EEEEeccccceecCc
Confidence 99999998876554433 48999998 999874
No 242
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=25.42 E-value=1.2e+02 Score=40.22 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=63.4
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC-CCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS-PND 344 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~-~~~ 344 (887)
+.|+-...++|.+.+.. + + =+|.++|||+|-=-|+- +|--|.- -+.+-|+-|.-|.-.|+|-- +..
T Consensus 469 ~MG~~g~~~~G~a~~~~---~-----~-~v~a~iGDgTf~HSG~~--al~~AV~--~~~nit~~IL~N~~tAMTGgQp~~ 535 (1159)
T PRK13030 469 QMGGEGVDWIGHAPFTE---T-----K-HVFQNLGDGTYFHSGSL--AIRQAVA--AGANITYKILYNDAVAMTGGQPVD 535 (1159)
T ss_pred ccCccchhhceeccccC---C-----C-CEEEEeccchhhhcCHH--HHHHHHh--cCCCeEEEEEeCCcccccCCCCCC
Confidence 33444455666665521 1 2 28999999999444443 3333333 45663444444555577762 222
Q ss_pred c-ccCCcccccccccCCcEEEEcCCCHHH----------------HHHHHHHHHHHHHccCCcEEEEE
Q psy9579 345 L-RSTLYCTDIGKIIEAPVFHVNGDDPES----------------VILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 345 ~-rss~~~sd~Ak~~giP~~~VdG~D~~A----------------V~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
. -+-..++...++.|+.-+.|=.+||.. ...++++++ |+..|+.+|-.
T Consensus 536 g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 536 GSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 2 111233446779999888776666654 234444444 25678888754
No 243
>PRK05858 hypothetical protein; Provisional
Probab=25.32 E-value=3.3e+02 Score=32.86 Aligned_cols=93 Identities=6% Similarity=-0.014 Sum_probs=52.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++| |.. -++| +|+|.-+-... .......-..+..++.+.+---..+| ++++
T Consensus 68 ~gv~~~t~GpG~~n~~~~i~~----A~~--~~~P-vl~i~g~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~ 136 (542)
T PRK05858 68 PGVAVLTAGPGVTNGMSAMAA----AQF--NQSP-LVVLGGRAPAL--RWGMGSLQEIDHVPFVAPVTKFAATA--QSAE 136 (542)
T ss_pred CeEEEEcCCchHHHHHHHHHH----HHh--cCCC-EEEEeCCCCcc--cCCCCCCcccchhhhhhhhhceEEEe--CCHH
Confidence 456666667666633333333 233 7889 99887422111 00001111112223333333334455 5689
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKF-KKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~-~~PvlIe~ 395 (887)
.+..++..|+..+..+ .|||+|++
T Consensus 137 ~~~~~i~~A~~~A~~~~~GPV~l~i 161 (542)
T PRK05858 137 NAGRLVDQALQAAVTPHRGPVFVDF 161 (542)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEEc
Confidence 9999999999888876 58999998
No 244
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.97 E-value=1.9e+02 Score=32.24 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=62.7
Q ss_pred CCceEEEEeecCcccccccHHHHHHHHhccCCCCCCC-EEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCC
Q psy9579 290 GTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGG-TIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGD 368 (887)
Q Consensus 290 ~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpG-vIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~ 368 (887)
....++|+.-| .|...++|--+.-.| .+++ ++.||.||. .+..+|+.+|+|.++++-.
T Consensus 83 ~~~ki~vl~Sg------~g~nl~~l~~~~~~g-~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~~ 141 (280)
T TIGR00655 83 KLKRVAILVSK------EDHCLGDLLWRWYSG-ELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPAT 141 (280)
T ss_pred CCcEEEEEEcC------CChhHHHHHHHHHcC-CCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCCC
Confidence 34668887764 455577776664433 2333 777777773 2344689999999999865
Q ss_pred CHHHHHHH-HHHHHHHHHccCCcEEEEEEeeec-CCCCCCCCCCCCChHhhHHHhhCCCHHHHHH
Q psy9579 369 DPESVILV-TKIAVEYRMKFKKDCIINIICFRK-LGHNEQDTPSLTQPLMYKKIFKHPGIRELYS 431 (887)
Q Consensus 369 D~~AV~~a-~~~A~e~~r~~~~PvlIe~vtYR~-~GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~ 431 (887)
+ . -... -...++..++++-|.+| +.+|.+ .+-+-.+.+ .++-+.-|+..+..|+
T Consensus 142 ~-~-~~~~~e~~~~~~l~~~~~Dliv-lagym~il~~~~l~~~------~~~iINiHpSLLP~f~ 197 (280)
T TIGR00655 142 K-D-NRVEHEKRQLELLKQYQVDLVV-LAKYMQILSPDFVKRY------PNKIINIHHSFLPAFI 197 (280)
T ss_pred C-c-chhhhHHHHHHHHHHhCCCEEE-EeCchhhCCHHHHhhc------cCCEEEecCCcCCCCC
Confidence 4 1 1111 12234556676656544 555532 221111211 1233566888888884
No 245
>PRK08617 acetolactate synthase; Reviewed
Probab=24.80 E-value=3.6e+02 Score=32.55 Aligned_cols=94 Identities=9% Similarity=-0.003 Sum_probs=53.3
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++-.-. ++--|.. -++| +|+|.-.....-. .....-.....++.+.+-- ....=++|+
T Consensus 68 ~gv~~vt~GpG~~N~l~----gl~~A~~--~~~P-vlvisG~~~~~~~--~~~~~q~~d~~~l~~~~tk--~~~~v~~~~ 136 (552)
T PRK08617 68 PGVVLVTSGPGVSNLAT----GLVTATA--EGDP-VVAIGGQVKRADR--LKRTHQSMDNVALFRPITK--YSAEVQDPD 136 (552)
T ss_pred CEEEEECCCCcHhHhHH----HHHHHhh--cCCC-EEEEecCCccccc--CCCCccccchhhhhhhhcc--eEEEeCCHH
Confidence 56777777877772222 2222334 6889 9988752221000 0000000111223333322 333446899
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+..++..|+..+..++ |||+|++=
T Consensus 137 ~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 137 NLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 99999999999988874 79999983
No 246
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=24.19 E-value=3.1e+02 Score=29.71 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=60.4
Q ss_pred HHHHHHhhccCC----CCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEec-ccCCCCCccccCchHHHHH
Q psy9579 618 ILGFEYGFSTAS----PNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLP-HGYEGQGPEHSSARLERFL 692 (887)
Q Consensus 618 ilG~~~G~a~~~----~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP-~G~~g~GpeHSs~r~Er~l 692 (887)
-++.++|+|+.. +...+++=+=-|.|..|- ...-+... ..|+. ..|++++= .||.--++.+.....+.|-
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~--~~eal~~a--~~~~l-~~li~vvdnN~~~~~~~~~~~~~~~~~~ 184 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGS--VWEAASFA--GHYKL-DNLIAIVDSNRIQIDGPTDDILFTEDLA 184 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccH--HHHHHHHH--HHcCC-CcEEEEEECCCccccCcHhhccCchhHH
Confidence 345666766653 244455444445555441 11112222 23321 23555553 4564344444444455555
Q ss_pred hhhcCCCcEEEcCC--CHhHHHHHHHHHHhCCCCCcEEEEc
Q psy9579 693 QLCANNNIQIVQPT--SASQIFHLLRYQIIRPIRKPLIIIT 731 (887)
Q Consensus 693 q~~~~~nl~V~~ps--tpa~~~hlLr~q~~~~~r~Plv~~~ 731 (887)
.++..-||.++... ++.+....|+.+.... .+|++|.-
T Consensus 185 ~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~-~~P~~I~~ 224 (255)
T cd02012 185 KKFEAFGWNVIEVDGHDVEEILAALEEAKKSK-GKPTLIIA 224 (255)
T ss_pred HHHHHcCCeEEEECCCCHHHHHHHHHHHHHcC-CCCEEEEE
Confidence 55555699999888 9999999999877542 38987764
No 247
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=23.82 E-value=2.2e+02 Score=37.83 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=59.3
Q ss_pred EEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC-CCC-cccCCcccccccccCCcEEEEcCCCHHH
Q psy9579 295 PVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS-PND-LRSTLYCTDIGKIIEAPVFHVNGDDPES 372 (887)
Q Consensus 295 ~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~-~~~-~rss~~~sd~Ak~~giP~~~VdG~D~~A 372 (887)
+|.++|||+|---|+-- |--|.- -+..-|+-|.-|.-.|+|-- +.+ ..+...+.+..++.|+.-+.|=.+||..
T Consensus 502 v~a~iGDgTffHSG~~a--l~~AV~--~~~nit~~IL~N~~vAMTGgQ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~ 577 (1165)
T PRK09193 502 VFQNLGDGTYFHSGLLA--IRAAVA--AGVNITYKILYNDAVAMTGGQPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEK 577 (1165)
T ss_pred EEEEeccccchhcCHHH--HHHHHh--cCCCeEEEEEeCCcccccCCCCCCCCcchhhHHHHHHhCCCCEEEEeCCChhh
Confidence 89999999994444322 222223 35553666666666788872 332 2344678888999999888776666665
Q ss_pred H-----------------HHHHHHHHHHHHccCCcEEEEE
Q psy9579 373 V-----------------ILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 373 V-----------------~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
. ..++++++ |+..|+.+|-.
T Consensus 578 ~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~ 614 (1165)
T PRK09193 578 YDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIY 614 (1165)
T ss_pred hhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 4 44444444 36778887754
No 248
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=23.45 E-value=2.6e+02 Score=27.87 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=57.3
Q ss_pred EEEEeecCcccccccHHHHHH-HHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEE-cCCCHH
Q psy9579 294 LPVLVHGDAAFSGQGVVMETL-NFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPE 371 (887)
Q Consensus 294 v~i~~hGDgA~~gqG~v~EaL-N~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~ 371 (887)
.+|+..= +.| .+ -.+|.| |.++. .++| +++++..-+++.... ..+-....|.+-.-.+|.+.| ---|+.
T Consensus 64 ~pi~~~~-~~f-~~-ra~dqi~~~~a~--~~~p-v~~~~~~~g~~~~~~---G~tH~~~~~~a~~~~iPg~~v~~Ps~~~ 134 (156)
T cd07033 64 KPFVSTF-SFF-LQ-RAYDQIRHDVAL--QNLP-VKFVGTHAGISVGED---GPTHQGIEDIALLRAIPNMTVLRPADAN 134 (156)
T ss_pred eEEEEEC-HHH-HH-HHHHHHHHHHhc--cCCC-eEEEEECCcEecCCC---CcccchHHHHHHhcCCCCCEEEecCCHH
Confidence 3444333 555 33 334544 48899 8999 999888665554321 111113566777778888775 678999
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
++....+.|++. ++|++|-+
T Consensus 135 ~~~~ll~~a~~~----~~P~~irl 154 (156)
T cd07033 135 ETAAALEAALEY----DGPVYIRL 154 (156)
T ss_pred HHHHHHHHHHhC----CCCEEEEe
Confidence 998888888854 34988754
No 249
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=23.14 E-value=4.3e+02 Score=31.77 Aligned_cols=94 Identities=9% Similarity=-0.024 Sum_probs=54.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-. ++--|.. -++| +|+|+-.-..... ...........++++. +--...--++|+
T Consensus 62 ~gv~~~t~GpG~~n~l~----gl~~A~~--~~~P-vl~I~G~~~~~~~--~~~~~q~~d~~~~~~~--~tk~~~~i~~~~ 130 (539)
T TIGR02418 62 PGVALVTSGPGCSNLVT----GLATANS--EGDP-VVAIGGQVKRADL--LKLTHQSMDNVALFRP--ITKYSAEVQDPD 130 (539)
T ss_pred ceEEEECCCCCHhHHHH----HHHHHhh--cCCC-EEEEeCCCccccc--ccCcccccchhhhhhc--ceeeeeecCCHH
Confidence 56777777888773222 2223445 6789 9999864221110 0111111111222222 222344447999
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
++...+..|+..+..+. |||+|++=
T Consensus 131 ~~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 131 ALSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 99999999999888874 89999983
No 250
>PRK07524 hypothetical protein; Provisional
Probab=22.56 E-value=4e+02 Score=32.01 Aligned_cols=95 Identities=9% Similarity=-0.083 Sum_probs=55.7
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCc-ccCCcccccccccCCcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDL-RSTLYCTDIGKIIEAPVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~-rss~~~sd~Ak~~giP~~~VdG~D~ 370 (887)
-.++++..|=|++..-+-+++ |.. -++| +|+|+-......-...... ....+..++.+.+- -..+.=++|
T Consensus 65 ~gv~~~t~GpG~~n~~~gi~~----A~~--~~~P-vl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~t--k~~~~v~~~ 135 (535)
T PRK07524 65 PGVCFIITGPGMTNIATAMGQ----AYA--DSIP-MLVISSVNRRASLGKGRGKLHELPDQRAMVAGVA--AFSHTLMSA 135 (535)
T ss_pred CeEEEECCCccHHHHHHHHHH----HHh--cCCC-EEEEeCCCChhhcCCCCccccccccHHHHhhhhc--eeEEEeCCH
Confidence 567777778887733333333 334 7899 9999854322100000000 00012223333322 234455689
Q ss_pred HHHHHHHHHHHHHHHcc-CCcEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKF-KKDCIINI 395 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~-~~PvlIe~ 395 (887)
+.+..++..|+..++.+ .|||+|++
T Consensus 136 ~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (535)
T PRK07524 136 EDLPEVLARAFAVFDSARPRPVHIEI 161 (535)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 99999999999999987 59999998
No 251
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=22.29 E-value=4.1e+02 Score=32.26 Aligned_cols=91 Identities=10% Similarity=-0.060 Sum_probs=48.0
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEE--EEcCCC
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVF--HVNGDD 369 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~--~VdG~D 369 (887)
-.|+++..|=|++..-. ++--|.. -++| +|+|.-+-...- ..+....-.|....+. |+. ..-=.+
T Consensus 67 ~gv~~~t~GpG~~n~~~----gi~~A~~--~~~P-vl~i~G~~~~~~-----~~~~~~Q~~d~~~l~~-~itk~~~~v~~ 133 (574)
T PRK09124 67 LAVCAGSCGPGNLHLIN----GLFDCHR--NHVP-VLAIAAHIPSSE-----IGSGYFQETHPQELFR-ECSHYCELVSN 133 (574)
T ss_pred cEEEEECCCCCHHHHHH----HHHHHhh--cCCC-EEEEecCCcccc-----CCCCCccccChhhhcc-cceeeeEEeCC
Confidence 44555556666662112 2222334 6889 999975422110 0011100012222332 322 122347
Q ss_pred HHHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 370 PESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
++.+..+++.|+..+....|||+|++
T Consensus 134 ~~~~~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 134 PEQLPRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 78877888888888777789999997
No 252
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=21.53 E-value=4e+02 Score=27.02 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=56.0
Q ss_pred HHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEe-c-ccCC---------CCCccccCc
Q psy9579 618 ILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLML-P-HGYE---------GQGPEHSSA 686 (887)
Q Consensus 618 ilG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~l-P-~G~~---------g~GpeHSs~ 686 (887)
-++.++|+++..++..+|+=.=-|.|....| .+.+. .+++ .++++++ = +||. ++.+.+.+-
T Consensus 56 ~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~----el~t~--~~~~--lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
T cd02014 56 GLPGAIAAKLAYPDRQVIALSGDGGFAMLMG----DLITA--VKYN--LPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDL 127 (178)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchHHHhhHH----HHHHH--HHhC--CCcEEEEEECCchhHHHHHHHHhcCCceeccC
Confidence 3456777777776555555444444544322 23322 3332 3444443 2 3442 111111110
Q ss_pred hHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEE
Q psy9579 687 RLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLII 729 (887)
Q Consensus 687 r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~ 729 (887)
..-.|-+++.--|++.....++.+....|+++...+ +|.||
T Consensus 128 ~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~~~--~p~li 168 (178)
T cd02014 128 PNPDFAKIAEAMGIKGIRVEDPDELEAALDEALAAD--GPVVI 168 (178)
T ss_pred CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCC--CCEEE
Confidence 011355555556898888999999999999988765 88765
No 253
>PRK07586 hypothetical protein; Validated
Probab=21.26 E-value=4.3e+02 Score=31.50 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=54.3
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++-.-+-+++ |.. -++| +|+|+-.-..... ..+..-..+..++.+.+ --..+-=.+++
T Consensus 65 ~gv~~~t~GPG~~N~~~gl~~----A~~--~~~P-vl~i~G~~~~~~~--~~~~~q~~d~~~~~~~v--tk~~~~v~~~~ 133 (514)
T PRK07586 65 PAATLLHLGPGLANGLANLHN----ARR--ARTP-IVNIVGDHATYHR--KYDAPLTSDIEALARPV--SGWVRRSESAA 133 (514)
T ss_pred CEEEEecccHHHHHHHHHHHH----HHh--cCCC-EEEEecCCchhcc--CCCcccccchhhhhccc--cceeeecCCHH
Confidence 567777778887622222222 444 7899 9999864322110 00000001112222222 12334456889
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKF-KKDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~-~~PvlIe~v 396 (887)
.+..+++.|+..+..+ .|||+|++=
T Consensus 134 ~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 134 DVAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 9999999999999998 699999984
No 254
>PLN02573 pyruvate decarboxylase
Probab=20.94 E-value=2.8e+02 Score=33.84 Aligned_cols=95 Identities=13% Similarity=-0.040 Sum_probs=51.2
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccC---C---cccccccccCCcEEEE
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRST---L---YCTDIGKIIEAPVFHV 365 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss---~---~~sd~Ak~~giP~~~V 365 (887)
..++++..|=|++..-. ++--|.. -++| +|+|+-.-...-......+... . ...+..+.+-.-..+|
T Consensus 79 ~gv~~~t~GpG~~n~~~----gla~A~~--d~~P-vl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v 151 (578)
T PLN02573 79 VGACVVTFTVGGLSVLN----AIAGAYS--ENLP-VICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVI 151 (578)
T ss_pred CCeEEEecCccHHHHHH----HHHHHHH--hCCC-EEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEe
Confidence 34777777888873222 2223334 7889 9999864332110000000000 0 0001111111112222
Q ss_pred cCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 366 NGDDPESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 366 dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
.+|+.+...++.|+..++.+.|||+|++
T Consensus 152 --~~~~~~~~~l~~A~~~A~~~~gPV~l~i 179 (578)
T PLN02573 152 --NNLEDAHELIDTAISTALKESKPVYISV 179 (578)
T ss_pred --CCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4788888888899988888889999998
No 255
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.64 E-value=4.6e+02 Score=32.07 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=54.0
Q ss_pred CceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCH
Q psy9579 291 TQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDP 370 (887)
Q Consensus 291 ~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~ 370 (887)
+..|+++..|=|++ + .--.|--|.. =++| +|.|.= |..-+.--.+.....+...+.+.+=--.+.| .++
T Consensus 64 kpgV~~~tsGPGat-N---~~tgla~A~~--d~~P-ll~itG--qv~~~~~g~~afQe~D~~~l~~p~tk~~~~v--~~~ 132 (550)
T COG0028 64 KPGVCLVTSGPGAT-N---LLTGLADAYM--DSVP-LLAITG--QVPTSLIGTDAFQEVDQVGLFRPITKYNFEV--RSP 132 (550)
T ss_pred CCEEEEECCCCcHH-H---HHHHHHHHHh--cCCC-EEEEeC--CccccccCcchhhhcchhhHhhhhheeEEEe--CCH
Confidence 36899999988888 2 1222223334 6788 777643 2211111111111111222222221122233 588
Q ss_pred HHHHHHHHHHHHHHHccC-CcEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKFK-KDCIINI 395 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~-~PvlIe~ 395 (887)
+.+-.++++|+..+..++ |||+|++
T Consensus 133 ~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 133 EDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 999999999999999999 9999998
No 256
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.47 E-value=38 Score=31.54 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=43.2
Q ss_pred EeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHH
Q psy9579 297 LVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILV 376 (887)
Q Consensus 297 ~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a 376 (887)
++.|+-..+|--.+-+.|.-... -++++.||- + ++...+.++.+..|+++ +++.++-.
T Consensus 9 l~~g~~~ipga~e~l~~L~~~g~-------~~~~lTNns----~-----~s~~~~~~~L~~~Gi~~------~~~~i~ts 66 (101)
T PF13344_consen 9 LYNGNEPIPGAVEALDALRERGK-------PVVFLTNNS----S-----RSREEYAKKLKKLGIPV------DEDEIITS 66 (101)
T ss_dssp SEETTEE-TTHHHHHHHHHHTTS-------EEEEEES-S----S-----S-HHHHHHHHHHTTTT--------GGGEEEH
T ss_pred eEeCCCcCcCHHHHHHHHHHcCC-------CEEEEeCCC----C-----CCHHHHHHHHHhcCcCC------CcCEEECh
Confidence 34567677555555555555444 788999992 2 22223455557789884 55677777
Q ss_pred HHHHHHHHHc--cCCcEE
Q psy9579 377 TKIAVEYRMK--FKKDCI 392 (887)
Q Consensus 377 ~~~A~e~~r~--~~~Pvl 392 (887)
...+.+|.++ +.+.|+
T Consensus 67 ~~~~~~~l~~~~~~~~v~ 84 (101)
T PF13344_consen 67 GMAAAEYLKEHKGGKKVY 84 (101)
T ss_dssp HHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 7778888776 444443
Done!