Query psy9579
Match_columns 887
No_of_seqs 313 out of 2318
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:16:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yic_A 2-oxoglutarate decarbox 100.0 1E-198 4E-203 1789.1 74.3 837 27-886 6-868 (868)
2 2xt6_A 2-oxoglutarate decarbox 100.0 2E-196 8E-201 1806.2 75.4 840 25-886 249-1113(1113)
3 2jgd_A 2-oxoglutarate dehydrog 100.0 6E-192 2E-196 1738.4 80.4 845 26-886 86-931 (933)
4 2bfd_A 2-oxoisovalerate dehydr 100.0 4.8E-61 1.7E-65 542.3 31.4 364 110-517 29-396 (400)
5 1qs0_A 2-oxoisovalerate dehydr 100.0 2.9E-60 1E-64 536.3 29.4 320 109-466 48-374 (407)
6 1w85_A Pyruvate dehydrogenase 100.0 9.2E-60 3.1E-64 526.6 32.8 317 109-470 17-339 (368)
7 2ozl_A PDHE1-A type I, pyruvat 100.0 3.7E-60 1.3E-64 528.8 29.2 301 136-470 28-335 (365)
8 1umd_A E1-alpha, 2-OXO acid de 100.0 1.4E-54 4.6E-59 485.2 34.8 325 110-470 11-340 (367)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 9.5E-52 3.3E-56 490.8 34.5 542 137-884 21-615 (621)
10 3mos_A Transketolase, TK; thia 100.0 1.1E-49 3.9E-54 471.8 31.5 485 263-884 119-614 (616)
11 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.4E-47 4.9E-52 455.5 32.2 537 137-885 23-619 (629)
12 1qs0_B 2-oxoisovalerate dehydr 100.0 8.7E-44 3E-48 393.6 24.7 312 536-885 4-333 (338)
13 2ozl_B PDHE1-B, pyruvate dehyd 100.0 6.6E-44 2.3E-48 395.2 20.8 307 536-884 16-335 (341)
14 2bfd_B 2-oxoisovalerate dehydr 100.0 7.6E-43 2.6E-47 386.8 23.9 305 535-885 19-337 (342)
15 1gpu_A Transketolase; transfer 100.0 1.1E-41 3.9E-46 407.7 35.4 467 262-840 113-627 (680)
16 1umd_B E1-beta, 2-OXO acid deh 100.0 1.1E-42 3.6E-47 382.8 24.2 307 536-885 3-319 (324)
17 1ik6_A Pyruvate dehydrogenase; 100.0 3.7E-42 1.3E-46 384.8 25.1 307 536-885 50-364 (369)
18 2e6k_A Transketolase; structur 100.0 3.7E-41 1.3E-45 401.6 29.2 490 262-885 115-648 (651)
19 3rim_A Transketolase, TK; TPP, 100.0 2.7E-40 9.2E-45 394.6 34.5 461 264-835 132-653 (700)
20 1r9j_A Transketolase; domains, 100.0 2.6E-39 8.9E-44 386.7 40.6 470 264-840 115-618 (673)
21 1itz_A Transketolase; calvin c 100.0 5.1E-39 1.7E-43 384.5 39.2 504 262-886 124-674 (675)
22 2r8o_A Transketolase 1, TK 1; 100.0 3.2E-40 1.1E-44 394.6 27.7 471 263-837 112-620 (669)
23 1w85_B Pyruvate dehydrogenase 100.0 6.3E-40 2.2E-44 360.8 25.0 296 546-884 12-318 (324)
24 3uk1_A Transketolase; structur 100.0 8.3E-39 2.8E-43 382.7 33.7 476 264-840 154-670 (711)
25 3kom_A Transketolase; rossmann 100.0 5E-38 1.7E-42 374.3 39.5 476 263-840 114-622 (663)
26 3m49_A Transketolase; alpha-be 100.0 6.8E-38 2.3E-42 374.1 39.3 461 263-835 138-645 (690)
27 3l84_A Transketolase; TKT, str 100.0 7E-38 2.4E-42 371.0 35.0 454 262-836 111-592 (632)
28 2qtc_A Pyruvate dehydrogenase 100.0 5.9E-31 2E-35 320.8 33.9 547 172-818 102-774 (886)
29 1yd7_A 2-keto acid:ferredoxin 99.7 1.8E-17 6.3E-22 186.9 6.2 233 606-861 65-377 (395)
30 3ahc_A Phosphoketolase, xylulo 99.6 1.6E-15 5.4E-20 182.9 16.3 523 265-863 175-758 (845)
31 4feg_A Pyruvate oxidase; carba 99.6 3.3E-15 1.1E-19 176.8 8.7 162 265-445 420-597 (603)
32 2c42_A Pyruvate-ferredoxin oxi 99.3 8.9E-12 3.1E-16 157.5 17.1 219 598-837 46-335 (1231)
33 1v5e_A Pyruvate oxidase; oxido 98.9 7E-10 2.4E-14 131.0 5.7 119 265-401 413-541 (590)
34 2pan_A Glyoxylate carboligase; 98.8 9.3E-10 3.2E-14 130.5 4.3 120 265-401 442-582 (616)
35 1q6z_A BFD, BFDC, benzoylforma 98.8 5.3E-10 1.8E-14 130.1 0.8 114 265-399 401-525 (528)
36 2vk8_A Pyruvate decarboxylase 98.8 1E-09 3.5E-14 128.7 2.6 119 265-399 413-542 (563)
37 2uz1_A Benzaldehyde lyase; thi 98.7 6.4E-09 2.2E-13 122.0 6.4 116 265-399 419-546 (563)
38 2iht_A Carboxyethylarginine sy 98.7 3.4E-09 1.2E-13 124.6 3.1 114 265-399 436-561 (573)
39 1ozh_A ALS, acetolactate synth 98.7 3.1E-09 1E-13 124.9 2.2 115 265-400 420-544 (566)
40 2pgn_A Cyclohexane-1,2-dione h 98.6 3.5E-09 1.2E-13 125.0 0.2 116 265-401 424-549 (589)
41 1ovm_A Indole-3-pyruvate decar 98.6 1.3E-08 4.4E-13 119.0 4.9 114 265-399 408-532 (552)
42 2vbi_A Pyruvate decarboxylase; 98.6 8.6E-09 2.9E-13 121.0 2.9 115 265-399 409-533 (566)
43 1ybh_A Acetolactate synthase, 98.6 1.6E-08 5.5E-13 119.3 5.1 116 265-401 426-560 (590)
44 2vbf_A Branched-chain alpha-ke 98.6 1.5E-08 5E-13 119.1 4.4 115 265-399 425-551 (570)
45 1t9b_A Acetolactate synthase, 98.6 1.9E-08 6.5E-13 120.8 5.3 114 266-400 514-638 (677)
46 2nxw_A Phenyl-3-pyruvate decar 98.6 2E-08 6.9E-13 117.9 3.4 114 265-399 422-542 (565)
47 3hww_A 2-succinyl-5-enolpyruvy 98.5 4E-08 1.4E-12 115.2 4.6 109 268-399 420-539 (556)
48 3eya_A Pyruvate dehydrogenase 98.5 8.9E-08 3.1E-12 112.0 6.7 116 265-401 406-531 (549)
49 2q28_A Oxalyl-COA decarboxylas 98.5 1.3E-07 4.5E-12 110.8 8.0 113 266-400 422-545 (564)
50 2c31_A Oxalyl-COA decarboxylas 98.5 1.2E-07 4.2E-12 111.2 6.5 112 267-400 428-548 (568)
51 2x7j_A 2-succinyl-5-enolpyruvy 98.4 3.4E-08 1.1E-12 117.0 0.9 112 266-399 456-580 (604)
52 2wvg_A PDC, pyruvate decarboxy 98.4 7.1E-08 2.4E-12 113.2 3.0 114 266-399 414-541 (568)
53 3lq1_A 2-succinyl-5-enolpyruvy 98.3 3.1E-07 1.1E-11 108.1 3.9 106 271-399 442-560 (578)
54 3ju3_A Probable 2-oxoacid ferr 98.2 3E-06 1E-10 79.8 8.2 69 771-844 16-87 (118)
55 2c42_A Pyruvate-ferredoxin oxi 96.0 0.0095 3.3E-07 75.9 8.7 106 293-409 954-1079(1231)
56 1yd7_A 2-keto acid:ferredoxin 53.9 15 0.00051 40.9 6.0 44 360-405 150-193 (395)
57 2pgn_A Cyclohexane-1,2-dione h 43.9 76 0.0026 36.9 10.2 104 274-396 59-163 (589)
58 2uz1_A Benzaldehyde lyase; thi 42.7 52 0.0018 38.0 8.5 95 292-396 67-162 (563)
59 2iht_A Carboxyethylarginine sy 42.2 46 0.0016 38.5 8.0 94 292-396 74-169 (573)
60 1ybh_A Acetolactate synthase, 42.0 39 0.0013 39.3 7.3 94 292-396 76-170 (590)
61 2wvg_A PDC, pyruvate decarboxy 39.6 45 0.0015 38.6 7.3 105 274-396 57-167 (568)
62 4hhu_A OR280; engineered prote 37.8 39 0.0013 31.5 5.0 43 356-403 80-122 (170)
63 1ozh_A ALS, acetolactate synth 37.5 51 0.0018 38.1 7.4 94 292-396 74-168 (566)
64 2vbi_A Pyruvate decarboxylase; 35.9 40 0.0014 39.0 6.1 96 292-396 66-167 (566)
65 2kl8_A OR15; structural genomi 35.6 56 0.0019 27.3 5.1 36 363-403 5-40 (85)
66 1t9b_A Acetolactate synthase, 35.1 79 0.0027 37.6 8.6 104 274-396 136-240 (677)
67 3eya_A Pyruvate dehydrogenase 33.9 87 0.003 36.0 8.5 92 292-395 67-159 (549)
68 3kcq_A Phosphoribosylglycinami 31.8 68 0.0023 32.8 6.3 82 292-398 9-91 (215)
69 2x7j_A 2-succinyl-5-enolpyruvy 31.7 91 0.0031 36.3 8.3 104 274-396 85-196 (604)
70 2c31_A Oxalyl-COA decarboxylas 30.4 75 0.0026 36.6 7.2 95 292-395 73-168 (568)
71 2q28_A Oxalyl-COA decarboxylas 30.4 74 0.0025 36.6 7.1 95 292-395 71-166 (564)
72 4hhu_A OR280; engineered prote 30.2 61 0.0021 30.2 5.0 89 359-464 2-113 (170)
73 2nxw_A Phenyl-3-pyruvate decar 29.6 85 0.0029 36.3 7.4 106 274-396 75-184 (565)
74 4feg_A Pyruvate oxidase; carba 28.6 1.4E+02 0.0048 34.7 9.1 92 292-395 76-168 (603)
75 2zzd_B Thiocyanate hydrolase s 25.1 82 0.0028 30.8 5.2 33 427-459 113-145 (157)
76 3mos_A Transketolase, TK; thia 23.8 1.6E+02 0.0056 34.5 8.5 89 293-395 381-470 (616)
77 4ds3_A Phosphoribosylglycinami 23.0 93 0.0032 31.6 5.4 84 292-398 8-95 (209)
78 1v5e_A Pyruvate oxidase; oxido 21.6 2.4E+02 0.0083 32.6 9.4 120 605-738 43-168 (590)
79 3tqr_A Phosphoribosylglycinami 20.9 1.2E+02 0.0039 31.0 5.6 87 292-398 6-92 (215)
80 1bwx_A Parathyroid hormone; pe 20.7 49 0.0017 25.0 2.0 19 115-133 13-31 (39)
81 2pan_A Glyoxylate carboligase; 20.7 2.2E+02 0.0076 33.0 8.8 94 292-396 92-186 (616)
82 3lq1_A 2-succinyl-5-enolpyruvy 20.6 3.2E+02 0.011 31.4 10.1 106 274-396 65-176 (578)
83 1q6z_A BFD, BFDC, benzoylforma 20.6 1.5E+02 0.0053 33.6 7.3 104 274-396 54-159 (528)
84 2e6k_A Transketolase; structur 20.4 1.4E+02 0.0047 35.4 6.9 78 309-395 435-513 (651)
No 1
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1e-198 Score=1789.06 Aligned_cols=837 Identities=41% Similarity=0.711 Sum_probs=752.0
Q ss_pred hhHHHHHHHHHHHHhcccccCccCCCCCCcc--ccccccCcccccCCCCccccccccccCccccCCcccCHHHHHHHHHH
Q psy9579 27 NKKFKLISLIDNYRRLGVYFANLDPLKQKIK--TINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKN 104 (887)
Q Consensus 27 ~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~--~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~tl~ei~~~L~~ 104 (887)
.++++|++||+|||.+||+.|+||||++.+. . .. |+|++.+|||+++||+++|.+|++. |...+||+||+++|++
T Consensus 6 ~~~~~~~~li~~yr~~gh~~a~~dpl~~~~~~~~-~~-~~l~~~~~g~~~~d~~~~~~~~~~~-~~~~~~l~~~~~~l~~ 82 (868)
T 2yic_A 6 DKNARVIELIAAYRNRGHLMADIDPLRLDNTRFR-SH-PDLDVNSHGLTLWDLDREFKVDGFA-GVQRKKLRDILSVLRD 82 (868)
T ss_dssp -CHHHHHHHHHHHHHHGGGTSCCCTTCCCTHHHH-C------------CCSTTSSBC---------CCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccceecCCCCCCCCCCC-CC-CccCHHhcCCChHHhCCeeccCCcc-CcCcCCHHHHHHHHHH
Confidence 4688999999999999999999999998331 3 34 8999999999999999999998764 7778999999999999
Q ss_pred HhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHHHH
Q psy9579 105 TYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLN 184 (887)
Q Consensus 105 ~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vgl~ 184 (887)
+|||+||+|||||.|++++.|+++++|... +.+++|+++++|++|+++|.||+++.++|.++||||++||||+++|++
T Consensus 83 ~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~ 160 (868)
T 2yic_A 83 AYCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMD 160 (868)
T ss_dssp HHSSSEEEECTTCSCHHHHHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHH
T ss_pred hhcCCCCcceeccCChHHhHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHH
Confidence 999999999999999999999999999864 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCC--CCCCCcccccccccccCCC-Cc-eeEEEe
Q psy9579 185 EIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSEN--LLSGDVKYHQGFSSNINTP-GG-VIHLSL 260 (887)
Q Consensus 185 ~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~--~~~GDvkyHlG~s~~~~~~-gg-~~hl~l 260 (887)
++++.+++++++|+++||+||||+|+|+|++|+|+.+||+||+|+.+++ .++||||||+|.++..... |+ .+|+++
T Consensus 161 ~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l 240 (868)
T 2yic_A 161 AVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSL 240 (868)
T ss_dssp HHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEE
T ss_pred HHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeee
Confidence 9999999999999999999999999999999999999999999998765 3678999999998655432 55 799999
Q ss_pred ecCCCcccccccccchhHHHHHhhccCCCC-----CceEEEEeecCcccccccHHHHHHHHhccCCCCCC--CEEEEEEe
Q psy9579 261 AFNPSHLEIINPVVEGSAKARMERRDDKFG-----TQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTG--GTIHIIIN 333 (887)
Q Consensus 261 ~~npShle~v~Pva~G~A~A~q~~~~~~~~-----~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lp--GvIfiv~N 333 (887)
++||||||.++|+|+|+|+|.|+++.+.++ .+.+++|+||||||++||+||||||||++ |++| |+||||+|
T Consensus 241 ~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~--~~lp~g~vi~iv~N 318 (868)
T 2yic_A 241 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALL--RGYRTGGTIHIVVN 318 (868)
T ss_dssp CCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTC--TTTCCSCCEEEEEE
T ss_pred cCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHh--cCCCCCCeEEEEEc
Confidence 999999999999999999999998643222 57899999999997799999999999999 7776 89999999
Q ss_pred CCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCC
Q psy9579 334 NQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQ 413 (887)
Q Consensus 334 Nq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tq 413 (887)
|||||||++.+++++.+++++|++||+|++||||+||+||+.|+++|++|+|++++|+|||++|||++|||++|||+|||
T Consensus 319 N~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~ 398 (868)
T 2yic_A 319 NQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ 398 (868)
T ss_dssp CSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTC
T ss_pred CCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCC
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCccCccccccccccCCCC--CC
Q psy9579 414 PLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPS-NFIYDKSKSEWAPFLKNGYI--DN 490 (887)
Q Consensus 414 p~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~-~~~~~~~~~~w~~~~~~~~~--~~ 490 (887)
|.+|+.+++++||+.+|+++|+++|++|++++++++++++++++++++.|++..| .+ . .| .+....+. .+
T Consensus 399 p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~-~-----~~-~~~~~~~~~~~~ 471 (868)
T 2yic_A 399 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEI-E-----PS-ESVEADQQIPSK 471 (868)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-c-----cc-cccccccccccC
Confidence 9999999999999999999999999999999999999999999999999887422 11 1 23 22211121 24
Q ss_pred CCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCccc
Q psy9579 491 CNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFS 570 (887)
Q Consensus 491 ~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFs 570 (887)
.+|+++.+.|+.++++++++|++|++|++|+++++.|.+|+++ +.||||++|+|||||||.+|++|||+||||+|||||
T Consensus 472 ~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~-~~i~~a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs 550 (868)
T 2yic_A 472 LATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFT 550 (868)
T ss_dssp CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTS
T ss_pred CCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcCcCCccchh
Confidence 5799999999999999999999999999999999999999877 679999999999999999999999999999999999
Q ss_pred ccceeeeccccccccccCCCcEEecCCCc------cccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccc
Q psy9579 571 HRHAILYNQDYQYSEKETDISTYIPLHNV------SKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFA 644 (887)
Q Consensus 571 hRHav~~dq~~~~~~~~~~~~~~~pl~~l------~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~ 644 (887)
|||||||||+ +|++|.||++| .+++|++||+||||||++++|||+|||+.|++++||||+|||||+
T Consensus 551 ~rh~v~~d~~--------~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~ 622 (868)
T 2yic_A 551 QRHAVIVDRK--------TGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFV 622 (868)
T ss_dssp CCCSSEECTT--------TCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGG
T ss_pred hcchhccccC--------CCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHH
Confidence 9999999999 99999999999 888999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCC
Q psy9579 645 NGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIR 724 (887)
Q Consensus 645 ~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r 724 (887)
|+||++||||+++++.||++++||||++||||+|+||+|||+|+|+|||||++|||+|++||||+|+|||||+|+++++|
T Consensus 623 ~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~ 702 (868)
T 2yic_A 623 NGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQ 702 (868)
T ss_dssp GGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccccCCCCCccccCCCCcceeecccccc---ccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEecc
Q psy9579 725 KPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDD---IIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIE 801 (887)
Q Consensus 725 ~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~---~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~ 801 (887)
+|||||+||+|||++.++|+++++++|.|+++|+++.+ ++++++|+|||||||++||+|++++++.|.++++|||+|
T Consensus 703 ~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~~~~l~aa~~~~g~i~v~VIdl~ 782 (868)
T 2yic_A 703 RPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRIE 782 (868)
T ss_dssp CCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred CcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHHHHHHHHHHHhCCCCCEEEEEee
Confidence 99999999999999999988888877889999998875 568899999999999999999998877775799999999
Q ss_pred ccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc-CCcEEEecCCCCCCCCCCchhhHHHHHHHH
Q psy9579 802 QLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS-TQKLIYVGRSCSASPASGYYSKHCKEQITL 880 (887)
Q Consensus 802 ~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~-~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i 880 (887)
||+|||.++|.++++||++++++|||||||+|+|+|++|.++|.+.+.. ..+++|+||+++++||+|+.+.|.+||++|
T Consensus 783 ~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~vg~~d~~~p~~g~~~~h~~~~~~~ 862 (868)
T 2yic_A 783 QLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVHAVEQQEI 862 (868)
T ss_dssp EEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEEEEECCCSSSSCSCHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEEeccCCcCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997642 368999999999999999999999999999
Q ss_pred HHHhhc
Q psy9579 881 LNNAFL 886 (887)
Q Consensus 881 ~~~a~~ 886 (887)
|++||+
T Consensus 863 ~~~a~~ 868 (868)
T 2yic_A 863 LDTAFG 868 (868)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 999984
No 2
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.3e-196 Score=1806.17 Aligned_cols=840 Identities=41% Similarity=0.709 Sum_probs=769.0
Q ss_pred hhhhHHHHHHHHHHHHhcccccCccCCCCCCcc--ccccccCcccccCCCCccccccccccCccccCCcccCHHHHHHHH
Q psy9579 25 ENNKKFKLISLIDNYRRLGVYFANLDPLKQKIK--TINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFL 102 (887)
Q Consensus 25 ~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~--~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~tl~ei~~~L 102 (887)
...++++|++||+|||.+||+.|+||||++.+. . .. |+|++.+|||+++||+++|.+|.+. |...+||+||+++|
T Consensus 249 ~~~~~~~~~~li~~yr~~gh~~a~~dpl~~~~~~~~-~~-~~l~~~~~g~~~~d~~~~~~~~~~~-~~~~~~l~~~~~~l 325 (1113)
T 2xt6_A 249 IEDKNARVIELIAAYRNRGHLMADIDPLRLDNTRFR-SH-PDLDVNSHGLTLWDLDREFKVDGFA-GVQRKKLRDILSVL 325 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCCCCTTCCCGGGGS-CC-TTTCSGGGTCCGGGTTSEEEECSTT-SSEEEEHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCccccccCCCCCCcCCCC-CC-CCcCHHHcCCChHHhcCccccCccc-CcccCCHHHHHHHH
Confidence 446799999999999999999999999998331 3 34 8999999999999999999998665 77789999999999
Q ss_pred HHHhcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHH
Q psy9579 103 KNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILS 182 (887)
Q Consensus 103 ~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vg 182 (887)
+++|||+||+|||||.|++++.|+++++|+.. +.+++|+++++|++|+++|.||+++.++|.++||||++||||+++|
T Consensus 326 ~~~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g 403 (1113)
T 2xt6_A 326 RDAYCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPM 403 (1113)
T ss_dssp HHHHSSSEEEECTTCSCHHHHHHHHHHHHSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHH
T ss_pred HHhccCCCCcceeccCCHHHhHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHH
Confidence 99999999999999999999999999999864 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCC--CCCCCcccccccccccCCC-Cc-eeEE
Q psy9579 183 LNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSEN--LLSGDVKYHQGFSSNINTP-GG-VIHL 258 (887)
Q Consensus 183 l~~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~--~~~GDvkyHlG~s~~~~~~-gg-~~hl 258 (887)
++++++.+++++++|+++||+||||+|+|+|++|+|+.+||+||+|+.+++ .++||||||+|.++..... |+ .+|+
T Consensus 404 ~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l 483 (1113)
T 2xt6_A 404 MDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEV 483 (1113)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEE
T ss_pred HHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceee
Confidence 999999999999999999999999999999999999999999999998765 3678999999998655332 55 7999
Q ss_pred EeecCCCcccccccccchhHHHHHhhccCCCC-----CceEEEEeecCcccccccHHHHHHHHhccCCCCCC--CEEEEE
Q psy9579 259 SLAFNPSHLEIINPVVEGSAKARMERRDDKFG-----TQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTG--GTIHII 331 (887)
Q Consensus 259 ~l~~npShle~v~Pva~G~A~A~q~~~~~~~~-----~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lp--GvIfiv 331 (887)
++++||||||.++|+|+|+|+|.|+++.+.++ .+.+++|+||||||++||+||||||||++ |++| |+||||
T Consensus 484 ~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~--~~lp~g~vi~iv 561 (1113)
T 2xt6_A 484 SLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALL--RGYRTGGTIHIV 561 (1113)
T ss_dssp EECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTC--TTTCCSCCEEEE
T ss_pred eecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhh--cCCCCCCeEEEE
Confidence 99999999999999999999999997642222 57999999999997699999999999999 7666 899999
Q ss_pred EeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCC
Q psy9579 332 INNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSL 411 (887)
Q Consensus 332 ~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~ 411 (887)
+||||||||++.+++++.|++|+|++||+|++||||+||+||+.|++.|++|+|++++|+|||++|||++|||++|+|+|
T Consensus 562 ~NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~ 641 (1113)
T 2xt6_A 562 VNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSM 641 (1113)
T ss_dssp EECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGG
T ss_pred EeCCcccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCcccc
Confidence 99999999998888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CC-CccCccccccccccCCCCC
Q psy9579 412 TQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPS-NF-IYDKSKSEWAPFLKNGYID 489 (887)
Q Consensus 412 tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~-~~-~~~~~~~~w~~~~~~~~~~ 489 (887)
|||.+|+.+|+++||+.+|+++|+++|++|++++++++++++++++++++.|++..| .+ +++.....|.+. .
T Consensus 642 ~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~~------~ 715 (1113)
T 2xt6_A 642 TQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIP------S 715 (1113)
T ss_dssp TCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred CChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc------c
Confidence 999999999999999999999999999999999999999999999999999987422 21 110011223221 2
Q ss_pred CCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcc
Q psy9579 490 NCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTF 569 (887)
Q Consensus 490 ~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtF 569 (887)
+.+|+++.+.|+.++++++++|++|++|++|+|+++.|.+|+++ +.||||++|+|||||||.+|++|||+||||+||||
T Consensus 716 ~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~-~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtf 794 (1113)
T 2xt6_A 716 KLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTF 794 (1113)
T ss_dssp -CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTT
T ss_pred CCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccc
Confidence 45799999999999999999999999999999999999999876 67999999999999999999999999999999999
Q ss_pred cccceeeeccccccccccCCCcEEecCCCc------cccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeecccc
Q psy9579 570 SHRHAILYNQDYQYSEKETDISTYIPLHNV------SKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDF 643 (887)
Q Consensus 570 shRHav~~dq~~~~~~~~~~~~~~~pl~~l------~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF 643 (887)
||||||||||+ +|++|+||++| .++||++||+||||||++++|||||||+.|++++||||+|||||
T Consensus 795 s~rh~v~~d~~--------~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF 866 (1113)
T 2xt6_A 795 TQRHAVIVDRK--------TGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDF 866 (1113)
T ss_dssp SCCCSSEECTT--------TCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGG
T ss_pred hhcchheeccc--------CCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHH
Confidence 99999999999 99999999999 88899999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhHHHHhcCccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCC
Q psy9579 644 ANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPI 723 (887)
Q Consensus 644 ~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~ 723 (887)
+|+||++||||+++++.||++++||||++||||+|+||+|||+|+|+|||||++|||+|++||||+|+|||||+|+++++
T Consensus 867 ~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~~~~ 946 (1113)
T 2xt6_A 867 VNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGI 946 (1113)
T ss_dssp GGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHHSSC
T ss_pred HhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccccCCCCCccccCCCCcceeecccccc---ccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEec
Q psy9579 724 RKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDD---IIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRI 800 (887)
Q Consensus 724 r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~---~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l 800 (887)
|+|||||+||+|||++.++|+++++.+|.|+++|+++.+ ++++++|+|||||||++||+|.+++++.|.++++|||+
T Consensus 947 ~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~~~~l~aa~~~~g~i~v~VIdl 1026 (1113)
T 2xt6_A 947 QRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRI 1026 (1113)
T ss_dssp CCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTHHHHHHHHHHHHTCTTEEEEEE
T ss_pred CCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHHHHHHHHHHHhCCCCCEEEEEe
Confidence 999999999999999999988888877789999998875 56899999999999999999999887777579999999
Q ss_pred cccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc-CCcEEEecCCCCCCCCCCchhhHHHHHHH
Q psy9579 801 EQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS-TQKLIYVGRSCSASPASGYYSKHCKEQIT 879 (887)
Q Consensus 801 ~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~-~~~~~~~gr~~~~~~a~g~~~~h~~~~~~ 879 (887)
|||+|||.++|.++++||++++++|||||||+|+|+|++|.++|.+.+.. ..+++|+||+++++||+|+...|.+||++
T Consensus 1027 ~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~~~~~~vg~~d~~~p~~g~~~~h~~~~~~ 1106 (1113)
T 2xt6_A 1027 EQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVHAVEQQE 1106 (1113)
T ss_dssp SEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHHTTCEEEEECCCSSSSCSCHHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHHhhhcCCCeEEEccCCcCCCCCCCHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999997642 36899999999999999999999999999
Q ss_pred HHHHhhc
Q psy9579 880 LLNNAFL 886 (887)
Q Consensus 880 i~~~a~~ 886 (887)
||++||+
T Consensus 1107 ~~~~a~~ 1113 (1113)
T 2xt6_A 1107 ILDTAFG 1113 (1113)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9999984
No 3
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=5.7e-192 Score=1738.41 Aligned_cols=845 Identities=51% Similarity=0.888 Sum_probs=754.2
Q ss_pred hhhHHHHHHHHHHHHhcccccCccCCCCCCccccccccCcccccCCCCccccccccccCccccCCcccCHHHHHHHHHHH
Q psy9579 26 NNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNT 105 (887)
Q Consensus 26 ~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~~~~~~~tl~ei~~~L~~~ 105 (887)
..++++|++||+|||.+||+.|+||||++..+. .. |+|++.+|||+++||+++|.+|.+.+|...+||+||+++|+++
T Consensus 86 ~~~~~~~~~li~~yr~~gh~~a~~dpl~~~~~~-~~-~~l~~~~~g~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 163 (933)
T 2jgd_A 86 NVKQVKVLQLINAYRFRGHQHANLDPLGLWQQD-KV-ADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQT 163 (933)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSCCCSSSCCCCC-----CCSSGGGGCCC-CTTSEEECTTCC---CEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccccCCCCCCCCC-CC-CCCCHhHcCCchhhccceeccCccccCcCcCcHHHHHHHHHHh
Confidence 357889999999999999999999999985444 34 8999999999999999999998765577789999999999999
Q ss_pred hcCCcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHHHHH
Q psy9579 106 YTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNE 185 (887)
Q Consensus 106 Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vgl~~ 185 (887)
|||+||+|||||.|++++.|+++++|+. .+.+++|+++++|++|+++|.||+++.++|+++||||++||||+++|++.
T Consensus 164 yc~~ig~e~~~i~~~~~~~w~~~~~e~~--~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~ 241 (933)
T 2jgd_A 164 YCGPIGAEYMHITSTEEKRWIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKE 241 (933)
T ss_dssp HHSSEEEECSSCCCHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHH
T ss_pred ccCCCcceeeecCCHHHhHHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHH
Confidence 9999999999999999999999999975 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCC
Q psy9579 186 IIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPS 265 (887)
Q Consensus 186 ~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npS 265 (887)
+++.|.++|++|+|+||+||||+|+|+|++|+|+.+||+||+|+.++..++||||||+|.++.+.+.|++||+++++|||
T Consensus 242 ~~~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~s 321 (933)
T 2jgd_A 242 MIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPS 321 (933)
T ss_dssp HHHHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCS
T ss_pred HHHHHhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCc
Confidence 99999999999999999999999999999999999999999999876556789999999987665678999999999999
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceecc-CCCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTT-SPND 344 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST-~~~~ 344 (887)
|+|+++|+|+|+|+|.|+++.+..+.+.++||+|||||+++||+||||||+|++.++.++|+||||+|||||||| ++.+
T Consensus 322 hlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~ 401 (933)
T 2jgd_A 322 HLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLD 401 (933)
T ss_dssp STTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC----------
T ss_pred ccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHh
Confidence 999999999999999999864333458999999999998799999999999999666666999999999999999 9999
Q ss_pred cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhhCC
Q psy9579 345 LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHP 424 (887)
Q Consensus 345 ~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~~~ 424 (887)
++++.|++++|++||+|++|||||||+||+.|++.|++++|++++|+|||++|||++|||++|+|+||+|.+|+.+++++
T Consensus 402 ~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~ 481 (933)
T 2jgd_A 402 ARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHP 481 (933)
T ss_dssp -----CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHHHHTSC
T ss_pred cccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHH
Q psy9579 425 GIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLS 504 (887)
Q Consensus 425 dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~ 504 (887)
||+.+|+++|+++|++|++++++++++++++++++++.|++..|.+ . ....|.++..........|+++.+.|+.++
T Consensus 482 dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~-~--~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~ 558 (933)
T 2jgd_A 482 TPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMN-M--HSFTWSPYLNHEWDEEYPNKVEMKRLQELA 558 (933)
T ss_dssp CHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCC-G--GGCTTGGGSSCCTTCCCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-c--chhhcccccccccccCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999888743322 1 124576653211122467999999999999
Q ss_pred HHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccc
Q psy9579 505 KKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYS 584 (887)
Q Consensus 505 ~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~ 584 (887)
+++..+|++|++|++|+|+++.|.+|+++++.+||+++|++||++||.+|++||++||||++|||||||||||||+
T Consensus 559 ~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~---- 634 (933)
T 2jgd_A 559 KRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQS---- 634 (933)
T ss_dssp HHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSS----
T ss_pred hhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhccccc----
Confidence 9999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcC
Q psy9579 585 EKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGR 664 (887)
Q Consensus 585 ~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~ 664 (887)
++++|.||++|.++||++||+||||||++++|||+|||+.|+++|||||+|||||+|+||.+||||++++++||++
T Consensus 635 ----~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~ 710 (933)
T 2jgd_A 635 ----NGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR 710 (933)
T ss_dssp ----SSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCC
T ss_pred ----CCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEecccCCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCc
Q psy9579 665 ISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASST 744 (887)
Q Consensus 665 ~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~ 744 (887)
++||||++||||+|+||+|||+|+|+|||+|++|||+|++||||+|+|||||+|+.+++++||||++||+|||++.++++
T Consensus 711 ~~~vv~~l~~G~~g~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~ 790 (933)
T 2jgd_A 711 MCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSS 790 (933)
T ss_dssp CCCCEEEEECCCSSSCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBC
T ss_pred CCCEEEEEeCCCCCCCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999976667899999999999999998887
Q ss_pred cccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeE
Q psy9579 745 LMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKL 824 (887)
Q Consensus 745 ~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~ 824 (887)
+++++++.|+.+|+++.+++ +++|+|+|+|+|++||+|++++++++..+++|||+|||+|||.++|.++++||+++++|
T Consensus 791 ~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~v 869 (933)
T 2jgd_A 791 LEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDF 869 (933)
T ss_dssp HHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCCSEEEEEECEEESCCHHHHHHHHGGGTTCCEE
T ss_pred ccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccCCeEEEEeeccCCCCHHHHHHHHHhCCCCceE
Confidence 88887788999999887665 88999999999999999999988776569999999999999999999999999998889
Q ss_pred EEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhhc
Q psy9579 825 IWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAFL 886 (887)
Q Consensus 825 v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~~ 886 (887)
|||||+|+|+|+|++|.++|.+.+....+++|+||+++++||+|+.+.|++||++|+++||+
T Consensus 870 v~veE~~~~gG~g~~v~~~l~~~~~~~~~v~~vg~~d~~~pa~g~~~~h~~~~~~i~~~a~~ 931 (933)
T 2jgd_A 870 VWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGHMSVHQKQQQDLVNDALN 931 (933)
T ss_dssp EEEEEEETTSTTHHHHHHHHHTTSCTTCEEEEEEECCCSSSSCSCHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCcCCHHHHHHHHHHHhcccCCceEEEecCCcCCCCcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987543468999999999999999999999999999999996
No 4
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=4.8e-61 Score=542.27 Aligned_cols=364 Identities=14% Similarity=0.090 Sum_probs=301.6
Q ss_pred cccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cccCCchhHHHHHHHH
Q psy9579 110 IGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKR---FSLEGSESFILSLNEI 186 (887)
Q Consensus 110 ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~kr---fg~eG~Ea~~vgl~~~ 186 (887)
-++++++|.|++++ |+.. . ..+.+++|+++++|+.|+++|.||+++.++|++++. ++.+||||+++|+
T Consensus 29 ~~~~~~~~l~~~g~-~~~~----~-~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~--- 99 (400)
T 2bfd_A 29 SGIPIYRVMDRQGQ-IINP----S-EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS--- 99 (400)
T ss_dssp SCSCEECSBCTTSC-BSCG----G-GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH---
T ss_pred CCCCeeEEECCCCC-CCCc----c-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH---
Confidence 35689999999997 4332 1 246799999999999999999999999999997764 4679999999999
Q ss_pred HHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCc
Q psy9579 187 IQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSH 266 (887)
Q Consensus 187 i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npSh 266 (887)
+.+++++|+|++ +||||+.++ ++|+++.++|+||+|+.++...++++++|++.. . ++ +..++++
T Consensus 100 ---~~al~~~D~v~~-~yR~~~~~~--~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~---~-----~~--~~~~~g~ 163 (400)
T 2bfd_A 100 ---AAALDNTDLVFG-QAREAGVLM--YRDYPLELFMAQCYGNISDLGKGRQMPVHYGCK---E-----RH--FVTISSP 163 (400)
T ss_dssp ---HHTSCTTSEEEC-CSCCHHHHH--HTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBT---T-----TT--BCCCCSS
T ss_pred ---HHhcCCCCEEEe-cCcCHHHHH--HcCCCHHHHHHHhcCCCCCCCCCCCCCcCCccc---c-----cC--ccccCcc
Confidence 889999999998 999999888 999999999999999987643223699999754 1 11 3477899
Q ss_pred ccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcc
Q psy9579 267 LEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLR 346 (887)
Q Consensus 267 le~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~r 346 (887)
+|.+.|+|+|+|+|.++++. +.++||++|||++ +||+|||+||+|+. |++| +||||.||+|||+|++..++
T Consensus 164 lG~~lp~AvG~AlA~~~~~~-----~~~vv~~~GDGa~-~~G~~~Eal~~A~~--~~lp-vi~vv~NN~~~i~~~~~~~~ 234 (400)
T 2bfd_A 164 LATQIPQAVGAAYAAKRANA-----NRVVICYFGEGAA-SEGDAHAGFNFAAT--LECP-IIFFCRNNGYAISTPTSEQY 234 (400)
T ss_dssp TTTHHHHHHHHHHHHHHHTC-----CCCEEEEEETTGG-GSHHHHHHHHHHHH--TTCC-EEEEEEECSEETTEEGGGTC
T ss_pred ccccccHHHHHHHhhhhhCC-----CCeEEEEECchhh-hcChHHHHHHHHHH--HCcC-EEEEEECCceeeeecccccC
Confidence 99999999999999998875 7899999999999 99999999999999 9999 99999999999999988888
Q ss_pred cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCC-CCChHhhHHHhhCCC
Q psy9579 347 STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPS-LTQPLMYKKIFKHPG 425 (887)
Q Consensus 347 ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~-~tqp~~Yr~i~~~~d 425 (887)
+..+++++|++||+|+++|||+|+++|+.|++.|++++|++++|+|||++|||++|||++|+|+ |++|.+|..+++++|
T Consensus 235 ~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~d 314 (400)
T 2bfd_A 235 RGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDH 314 (400)
T ss_dssp SSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CC
T ss_pred CCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999999999999999999999999999999987 777888887777789
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCCCCCCCccCHHHHHHHHH
Q psy9579 426 IRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSK 505 (887)
Q Consensus 426 pi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~ 505 (887)
|+.+|+++|++.|+++++++++++++++++|+++++.+++.+.+. |..++...+. ..++...++++.+.+
T Consensus 315 Pl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~--------~~~~~~~vy~--~~~~~l~~q~~~~~~ 384 (400)
T 2bfd_A 315 PISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN--------PNLLFSDVYQ--EMPAQLRKQQESLAR 384 (400)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCC--------GGGGSTTSSS--SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCC--------HHHHHHHhhc--cCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998655433 4443322332 246677788999999
Q ss_pred HhccCCCCCcch
Q psy9579 506 KITNIPKGFKLH 517 (887)
Q Consensus 506 ~~~~~P~~f~~h 517 (887)
.+...|++|.+.
T Consensus 385 ~~~~~~~~~~~~ 396 (400)
T 2bfd_A 385 HLQTYGEHYPLD 396 (400)
T ss_dssp HHHHHGGGSCGG
T ss_pred HHHhCCCcCCcc
Confidence 999889888654
No 5
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=2.9e-60 Score=536.29 Aligned_cols=320 Identities=14% Similarity=0.105 Sum_probs=286.0
Q ss_pred CcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----cCCchhHHHHHH
Q psy9579 109 NIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFS----LEGSESFILSLN 184 (887)
Q Consensus 109 ~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg----~eG~Ea~~vgl~ 184 (887)
++++++++|.|++++ |+. . ..+.+++|+++++|+.|+++|.||+++.++|. +|+++ .+||||+++|+
T Consensus 48 ~~~~~~~~~ld~~g~-~~~----~--~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~-qgr~~~~~~~~GqEA~~vg~- 118 (407)
T 1qs0_A 48 DLSYSLVRVLDEQGD-AQG----P--WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQR-QKKMSFYMQSLGEEAIGSGQ- 118 (407)
T ss_dssp HHHTSCBCCBCTTSC-BCS----G--GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSSCCCCCTTTHHHHHHH-
T ss_pred ccCCCeEEEECCCCC-CCC----c--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccccCcCCCChHHHHHHH-
Confidence 457789999999986 442 1 23679999999999999999999999999997 56665 59999999999
Q ss_pred HHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCC-CcccccccccccCCCCceeEEEeecC
Q psy9579 185 EIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSG-DVKYHQGFSSNINTPGGVIHLSLAFN 263 (887)
Q Consensus 185 ~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~G-DvkyHlG~s~~~~~~gg~~hl~l~~n 263 (887)
+++++++|+++ |+||+|+++| ++|+++.+||+||+|+..+.. .| .+++|++.. .. .+.++
T Consensus 119 -----~~al~~~D~v~-~~yR~~~~~l--~~g~~~~~i~~el~g~~~~~~-~G~g~~~h~~~~-~~---------~~~~~ 179 (407)
T 1qs0_A 119 -----ALALNRTDMCF-PTYRQQSILM--ARDVSLVEMICQLLSNERDPL-KGRQLPIMYSVR-EA---------GFFTI 179 (407)
T ss_dssp -----HHHSCTTSEEE-CCSSCHHHHH--HTTCCHHHHHHHHHTCTTCTT-TTCSCTTCCCBG-GG---------TBCCC
T ss_pred -----HHhcCCCCEEE-ecccchHHHH--hcCCCHHHHHHHHhCCCCCCC-CCCCceeecchh-cc---------Ccccc
Confidence 88999999999 5999999999 899999999999999987643 34 689999763 11 23578
Q ss_pred CCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCC
Q psy9579 264 PSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPN 343 (887)
Q Consensus 264 pShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~ 343 (887)
++|+|.+.|+|+|+|+|.|+++. +.++||++||||+ +||.|||+||+|++ |++| +||||+||+|||+|+..
T Consensus 180 ~g~lG~~lp~AvGaA~A~k~~~~-----~~~vv~i~GDGa~-~~G~~~Eal~~A~~--~~lp-vi~Vv~NN~~gi~~~~~ 250 (407)
T 1qs0_A 180 SGNLATQFVQAVGWAMASAIKGD-----TKIASAWIGDGAT-AESDFHTALTFAHV--YRAP-VILNVVNNQWAISTFQA 250 (407)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTTC-----CCCEEEEEETGGG-GSHHHHHHHHHHHH--HTCC-EEEEEEECSEETTEEGG
T ss_pred ccccccchhHHHHHHHHHHHhCC-----CCEEEEEECCchh-hcChHHHHHHHHHH--HCcC-EEEEEECCCcceeeccc
Confidence 89999999999999999999875 7899999999999 99999999999999 9999 99999999999999877
Q ss_pred Ccc-cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCC-hHhhHHHh
Q psy9579 344 DLR-STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQ-PLMYKKIF 421 (887)
Q Consensus 344 ~~r-ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tq-p~~Yr~i~ 421 (887)
.+. ...+++++|++||+|+++|||+|+++|+.|++.|++++|++++|+|||++|||.+|||++|||+.|+ +.+|+ .|
T Consensus 251 ~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~-~~ 329 (407)
T 1qs0_A 251 IAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWS-HF 329 (407)
T ss_dssp GGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHH-HC
T ss_pred cccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHH-HH
Confidence 655 4567888999999999999999999999999999999999999999999999999999999998654 45565 45
Q ss_pred hCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy9579 422 KHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSI 466 (887)
Q Consensus 422 ~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~ 466 (887)
+.+||+.+|+++|+++|++|++++++|+++++++|++++++|++.
T Consensus 330 ~~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~ 374 (407)
T 1qs0_A 330 PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQY 374 (407)
T ss_dssp TTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999999999999999999999999999999884
No 6
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=9.2e-60 Score=526.59 Aligned_cols=317 Identities=16% Similarity=0.184 Sum_probs=279.0
Q ss_pred CcccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----cCCchhHHHHHH
Q psy9579 109 NIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFS----LEGSESFILSLN 184 (887)
Q Consensus 109 ~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg----~eG~Ea~~vgl~ 184 (887)
.-.+++++|.|++++ |+.. . ..+.+++++++++|+.|+++|.||+++.+ +.+++++| .+||||+++|+
T Consensus 17 ~~~~~~~~~l~~~g~-~~~~----~-~~~~l~~e~l~~~y~~M~~~R~fe~~~~~-~~~qgr~g~~~~~~G~Ea~~vg~- 88 (368)
T 1w85_A 17 AEQFPTFQILNEEGE-VVNE----E-AMPELSDEQLKELMRRMVYTRILDQRSIS-LNRQGRLGFYAPTAGQEASQIAS- 88 (368)
T ss_dssp HHTCCEECSBCTTSC-BSCG----G-GCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCCSCCCCTTCHHHHHHH-
T ss_pred CCCCCeeEEECCCCC-CCCc----c-ccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HhhCCccccCCCCCCHHHHHHHH-
Confidence 334589999999997 4432 1 23579999999999999999999999955 56667778 59999999999
Q ss_pred HHHHHhhcCCCCcEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCC
Q psy9579 185 EIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNP 264 (887)
Q Consensus 185 ~~i~~a~al~~~D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~np 264 (887)
+.++.++|++++ +||+|+.++ ++|+++..+|+||+|+.+| |++ |. +..+.+++
T Consensus 89 -----~~~l~~~D~v~~-~~R~~~~~~--~~G~~~~~~~~el~G~~~G----~~~--h~-------------~~~~~~~~ 141 (368)
T 1w85_A 89 -----HFALEKEDFILP-GYRDVPQII--WHGLPLYQAFLFSRGHFHG----NQI--PE-------------GVNVLPPQ 141 (368)
T ss_dssp -----HHTCCTTCEEEC-CSSCHHHHH--HTTCCHHHHHHHHHTCGGG----GCC--CT-------------TCCBCCCC
T ss_pred -----HHhcCCcCEEEe-cchhHHHHH--hcCCCHHHHHHHHCCCCCC----CCC--Cc-------------ccccCCCc
Confidence 888999999999 699999998 9999999999999998764 232 20 12345788
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPND 344 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~ 344 (887)
+|+|.++|+|+|+|+|.++++. +.++||++||||+ +||++||+||+|+. |++| +||||+||+|||+|+...
T Consensus 142 g~lG~~lp~AvG~A~A~~~~~~-----~~~vv~i~GDGa~-~~G~~~Eal~~A~~--~~lp-vi~vv~NN~~gi~~~~~~ 212 (368)
T 1w85_A 142 IIIGAQYIQAAGVALGLKMRGK-----KAVAITYTGDGGT-SQGDFYEGINFAGA--FKAP-AIFVVQNNRFAISTPVEK 212 (368)
T ss_dssp CSTTHHHHHHHHHHHHHHHTTC-----SCCEEEEEETGGG-GSHHHHHHHHHHHH--TTCC-EEEEEEECSEETTEEGGG
T ss_pred cccCccccHHHHHHHHhHhhCC-----CCeEEEEEchhhh-hhcHHHHHHHHHHH--HCcC-EEEEEEcCCccceecccc
Confidence 9999999999999999999875 7899999999999 79999999999999 9999 999999999999999888
Q ss_pred cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCC-CCCCCCCCChHh-hHHHhh
Q psy9579 345 LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN-EQDTPSLTQPLM-YKKIFK 422 (887)
Q Consensus 345 ~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHn-e~DdP~~tqp~~-Yr~i~~ 422 (887)
+++..+++++|++||+|+++|||+|+++|+.|++.|++++|++++|+|||++|||++||| ++|||++|||.+ |+. |+
T Consensus 213 ~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~-~~ 291 (368)
T 1w85_A 213 QTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENE-WA 291 (368)
T ss_dssp TCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHH-HH
T ss_pred ccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHH-Hh
Confidence 888889999999999999999999999999999999999999999999999999999999 999999999998 654 44
Q ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy9579 423 HPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 423 ~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~ 470 (887)
.+||+.+|+++|+++|++|++++++|+++++++++++++.|++.|+++
T Consensus 292 ~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~ 339 (368)
T 1w85_A 292 KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQK 339 (368)
T ss_dssp TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 599999999999999999999999999999999999999999887654
No 7
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=3.7e-60 Score=528.83 Aligned_cols=301 Identities=17% Similarity=0.172 Sum_probs=268.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCCCCcEEecCCccchHHHH
Q psy9579 136 TPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVL 211 (887)
Q Consensus 136 ~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~~~D~v~gm~HRgr~~~L 211 (887)
.+.+++|+++++|+.|+++|.||+++..+|.+++..|+ +||||+++|+ ++++.++|++++ +||+|++++
T Consensus 28 ~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~------~~al~~~D~i~~-~yR~~~~~~ 100 (365)
T 2ozl_A 28 TTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGL------EAGINPTDHLIT-AYRAHGFTF 100 (365)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHH------HHTSCTTSEEEC-CSCCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHH------HHhhCCCCEEeh-HHHHHHHHH
Confidence 34689999999999999999999999999998877554 9999999999 899999999998 999999988
Q ss_pred HHHhCCCHHHHHHHccCCCCCCC-C-CCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCC
Q psy9579 212 VNILGKKPKELFDEFEDKNSENL-L-SGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKF 289 (887)
Q Consensus 212 ~n~~G~~~~~if~e~~G~~~~~~-~-~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~ 289 (887)
++|+|+.+||+||+|+.++.. + +|+ ||++ + . .+....++++.+.|+|+|+|+|.++++.
T Consensus 101 --~~G~~~~~i~~e~~g~~~g~~~g~gg~--~H~~-~---~--------~~~~~~g~~G~~lp~A~G~A~A~~~~~~--- 161 (365)
T 2ozl_A 101 --TRGLSVREILAELTGRKGGCAKGKGGS--MHMY-A---K--------NFYGGNGIVGAQVPLGAGIALACKYNGK--- 161 (365)
T ss_dssp --HTTCCHHHHHHHHTTCTTSTTTTSSCT--TCCC-B---T--------TBCCCCCSTTTHHHHHHHHHHHHHHHTC---
T ss_pred --hcCCCHHHHHHHHcCCCCCCCCCCCCC--CCcC-c---c--------ccCCCcchhhhhhHHHHHHHHHHHhcCC---
Confidence 999999999999999987642 2 344 5662 2 0 1234557899999999999999999875
Q ss_pred CCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCC
Q psy9579 290 GTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDD 369 (887)
Q Consensus 290 ~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D 369 (887)
+.++||++||||+ +||+|||+||+|++ |++| +||||+||+|||||+...+..+..... +++|+|+++|||+|
T Consensus 162 --~~~vv~~~GDGa~-~~G~~~Ealn~A~~--~~lp-vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D 233 (365)
T 2ozl_A 162 --DEVCLTLYGDGAA-NQGQIFEAYNMAAL--WKLP-CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMD 233 (365)
T ss_dssp --CCCEEEEEETTGG-GCHHHHHHHHHHHH--TTCC-EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTC
T ss_pred --CceEEEEECchhh-hccHHHHHHHHHHH--HCcC-EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCC
Confidence 7899999999998 99999999999999 9999 999999999999997554433333333 68999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCC-CCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHH
Q psy9579 370 PESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPS-LTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENM 448 (887)
Q Consensus 370 ~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~-~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i 448 (887)
+++|+.|++.|++++|++++|+|||++|||++|||++|+|. |++|.+|+.|++++||+.+|+++|+++|++|+++++++
T Consensus 234 ~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i 313 (365)
T 2ozl_A 234 ILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 313 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999874 89999999888789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC
Q psy9579 449 IKEFNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 449 ~~~~~~~l~~a~~~a~~~~~~~ 470 (887)
+++++++|+++++.|++.|.++
T Consensus 314 ~~~~~~~v~~a~~~a~~~p~p~ 335 (365)
T 2ozl_A 314 DVEVRKEIEDAAQFATADPEPP 335 (365)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999887554
No 8
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.4e-54 Score=485.19 Aligned_cols=325 Identities=16% Similarity=0.135 Sum_probs=289.5
Q ss_pred cccccccccChHHhHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cccCCchhHHHHHHHH
Q psy9579 110 IGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKR---FSLEGSESFILSLNEI 186 (887)
Q Consensus 110 ig~E~~hi~~~~~~~Wl~~~~E~~~~~~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~kr---fg~eG~Ea~~vgl~~~ 186 (887)
..+++++|.|++++ |+.. ..+.+++++++++|+.|+++|.||.++..++.+++. +|..|+|++++++
T Consensus 11 ~~~~~~~~l~~~g~-~~~~------~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~--- 80 (367)
T 1umd_A 11 FTEEPIRLIGEEGE-WLGD------FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAI--- 80 (367)
T ss_dssp SCSSCBCCBCTTSC-BCCS------SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHH---
T ss_pred CCCCeEEEECCCCC-CCCc------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHH---
Confidence 35689999999997 3332 235799999999999999999999999999998774 5569999999999
Q ss_pred HHHhhcCCCC-cEEecCCccchHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCC
Q psy9579 187 IQHSGKRGIR-EIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPS 265 (887)
Q Consensus 187 i~~a~al~~~-D~v~gm~HRgr~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npS 265 (887)
+.++.++ |++++ +||+++.++ ++|+++.++|++|+|+.++....+++++|++.... .+.++++
T Consensus 81 ---~~~l~~~rD~i~~-s~r~~~~~~--~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~----------~~~~~~g 144 (367)
T 1umd_A 81 ---AHAIRPGFDWVFP-YYRDHGLAL--ALGIPLKELLGQMLATKADPNKGRQMPEHPGSKAL----------NFFTVAS 144 (367)
T ss_dssp ---HHHSCTTTSEEEC-CTTTHHHHH--HHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTT----------TBCCCCS
T ss_pred ---HHHcCCCCcEEEe-CcHHHHHHH--HcCCCHHHHHHHHhCCCCCCCCCCCCCCCCccccc----------CcCCCCc
Confidence 7888888 99996 999998888 99999999999999998775333467899865411 2346889
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCc
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDL 345 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~ 345 (887)
|+|.+.|+|+|+|+|.|+.+. +.++||++|||++ ++|+++|+||+|+. |++| +||||.||+|||+|+...+
T Consensus 145 ~lG~~l~~a~G~A~a~k~~~~-----~~~vv~i~GDGa~-~~G~~~Eal~~A~~--~~lp-vi~vv~NN~~gi~~~~~~~ 215 (367)
T 1umd_A 145 PIASHVPPAAGAAISMKLLRT-----GQVAVCTFGDGAT-SEGDWYAGINFAAV--QGAP-AVFIAENNFYAISVDYRHQ 215 (367)
T ss_dssp STTTTHHHHHHHHHHHHHTTC-----CCCEEEEEETGGG-GSHHHHHHHHHHHH--TTCS-EEEEEEECSEETTEEHHHH
T ss_pred hhhhhhhHHHHHHHHHHHhCC-----CCeEEEEEccccc-ccCcHHHHHHHHHH--hCcC-EEEEEecCCeeeccChhhc
Confidence 999999999999999999875 7799999999999 99999999999999 9999 9999999999999988777
Q ss_pred ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCC-CChHhhHHHhhCC
Q psy9579 346 RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSL-TQPLMYKKIFKHP 424 (887)
Q Consensus 346 rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~-tqp~~Yr~i~~~~ 424 (887)
++..+++++|++||+|+++|||+|+++|+.|++.|+++++++++|+|||++|||..|||++|||+. ++|.+|+.+ +.+
T Consensus 216 ~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~-~~~ 294 (367)
T 1umd_A 216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFW-RKK 294 (367)
T ss_dssp CSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHH-HTT
T ss_pred cCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHH-HcC
Confidence 777899999999999999999999999999999999999999999999999999999999999975 456667654 458
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy9579 425 GIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNF 470 (887)
Q Consensus 425 dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~ 470 (887)
||+.+|+++|+++|++|++++++|+++++++++++++.|++.|.++
T Consensus 295 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~ 340 (367)
T 1umd_A 295 DPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVP 340 (367)
T ss_dssp CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCC
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999887554
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.5e-52 Score=490.78 Aligned_cols=542 Identities=13% Similarity=0.121 Sum_probs=370.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchhHHHHHHHHHHHhhcCC-CCcEEe--cCCccchHHHHHH
Q psy9579 137 PNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRG-IREIVI--GMAHRGRLNVLVN 213 (887)
Q Consensus 137 ~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~eG~Ea~~vgl~~~i~~a~al~-~~D~v~--gm~HRgr~~~L~n 213 (887)
..++.+++.++++.| |.+...+..+ .++-.-+..|+|.+.+++ ...+. ++|+++ . .||+.++.+
T Consensus 21 ~~l~~~~l~~l~~~i---R~~~~~~~~~-~~Gh~~~~lg~~~~~~~l------~~~~~~~~D~~v~~~-gH~~y~~~~-- 87 (621)
T 2o1s_A 21 RLLPKESLPKLCDEL---RRYLLDSVSR-SSGHFASGLGTVELTVAL------HYVYNTPFDQLIWDV-GHQAYPHKI-- 87 (621)
T ss_dssp TTSCGGGHHHHHHHH---HHHHHHHSCG-GGCTHHHHHTTHHHHHHH------HHHSCTTTSEEEESS-STTCHHHHH--
T ss_pred hhCCHHHHHHHHHHH---HHHHHHHHhh-cCCCcCCChhHHHHHHHH------HhccCCCCCEEEEeC-chHHHHHHH--
Confidence 367888998988887 4333222211 122222349999999888 45566 789887 5 899999888
Q ss_pred HhCCCHHHH--HHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccCCCCC
Q psy9579 214 ILGKKPKEL--FDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGT 291 (887)
Q Consensus 214 ~~G~~~~~i--f~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~~~~~ 291 (887)
..|. .+++ |.++.|. .|+. . ...+.+. .....|+|...|.|+|+|+|.++++.
T Consensus 88 l~G~-~~~~~~~r~~~g~-------------~g~~---~-~~~s~~~--~~~~G~~G~gl~~A~G~AlA~~~~~~----- 142 (621)
T 2o1s_A 88 LTGR-RDKIGTIRQKGGL-------------HPFP---W-RGESEYD--VLSVGHSSTSISAGIGIAVAAEKEGK----- 142 (621)
T ss_dssp TTTT-GGGGGGTTSTTSC-------------CSSC---C-TTTCTTC--CSCCSSSSCHHHHHHHHHHHHHHHTS-----
T ss_pred HhCC-HhhhhcccccCCC-------------CCCC---C-CCCCCCC--ccCCcccchHHHHHHHHHHHHHHhCC-----
Confidence 7776 2222 2222211 1111 0 1111111 13457899999999999999998875
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccC--------C--------------
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRST--------L-------------- 349 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss--------~-------------- 349 (887)
+..+||++|||++ .+|.+||+||+|+. |++| +|+||.||+|+++++...+... .
T Consensus 143 ~~~Vv~v~GDG~~-~~G~~~EaL~~A~~--~~~p-li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 218 (621)
T 2o1s_A 143 NRRTVCVIGDGAI-TAGMAFEAMNHAGD--IRPD-MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG 218 (621)
T ss_dssp CCCEEEEEETTGG-GSHHHHHHHHHHHH--HCCS-EEEEEEECC------------------------------------
T ss_pred CCeEEEEEchhhh-hccHHHHHHHHHHh--hCCC-EEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhc
Confidence 7789999999999 99999999999999 9999 9999999999999876532110 0
Q ss_pred -------------------cccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCC-CC
Q psy9579 350 -------------------YCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQ-DT 408 (887)
Q Consensus 350 -------------------~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~-Dd 408 (887)
....+++++|+.++ .|||+|++++..+.+.|.+ .++|+||++.|+|-.||+.. ++
T Consensus 219 ~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~e~~ 294 (621)
T 2o1s_A 219 VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPAEKD 294 (621)
T ss_dssp --------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC---
T ss_pred cchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChhhcC
Confidence 01367889999999 9999999999999888764 47999999999999999843 22
Q ss_pred CCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccccccCCCC
Q psy9579 409 PSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYI 488 (887)
Q Consensus 409 P~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~~~~~ 488 (887)
| ..+ -...|... ..|. . . +... ....|.
T Consensus 295 ~-----~~~----H~~~~f~~------~~~~-------------~---------~---~~~~----~~~~~~-------- 322 (621)
T 2o1s_A 295 P-----ITF----HAVPKFDP------SSGC-------------L---------P---KSSG----GLPSYS-------- 322 (621)
T ss_dssp -------------------------------------------------------------------CCBHH--------
T ss_pred c-----hhc----cCCCCCCC------CcCc-------------c---------c---cccc----chHHHH--------
Confidence 2 111 11111110 0000 0 0 0000 000010
Q ss_pred CCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCc
Q psy9579 489 DNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGT 568 (887)
Q Consensus 489 ~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGt 568 (887)
-++.++| ..++.++++|++.++|+..|+
T Consensus 323 --------------------------------------------------~~~~~~l--~~~~~~d~~v~~~~~d~~~~~ 350 (621)
T 2o1s_A 323 --------------------------------------------------KIFGDWL--CETAAKDNKLMAITPAMREGS 350 (621)
T ss_dssp --------------------------------------------------HHHHHHH--HHHHHHCTTEEEEESSCTTTT
T ss_pred --------------------------------------------------HHHHHHH--HHHHhhCcCEEEEeCcccCCc
Confidence 0111111 235677999999999997652
Q ss_pred ccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchh
Q psy9579 569 FSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQ 648 (887)
Q Consensus 569 FshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq 648 (887)
+ +.++.++| +.|++|++|||.+++|+++|+|+.|.+ |+|++ |++|+..
T Consensus 351 ---------------------~-----~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~r--p~~~~-~~~F~~~-- 398 (621)
T 2o1s_A 351 ---------------------G-----MVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYK--PIVAI-YSTFLQR-- 398 (621)
T ss_dssp ---------------------T-----CHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCE--EEEEE-ETTGGGG--
T ss_pred ---------------------C-----hHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCE--EEEEe-hHhHHHH--
Confidence 1 23566677 789999999999999999999999875 89999 9999855
Q ss_pred HHHHHHHhhHHHHhcCccCcEEEecc-cCCC-CCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCc
Q psy9579 649 VIIDQFISSSEEKWGRISGLTLMLPH-GYEG-QGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKP 726 (887)
Q Consensus 649 ~~~Dq~i~~~~~kw~~~sglv~~lP~-G~~g-~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~P 726 (887)
++||+++.. ++ ...++|+++|| |+.| .||.||+. |....+.+.|||+|+.|+||.+++++|+.+++.. ++|
T Consensus 399 -a~dqi~~~~-a~--~~~pvv~~~~~~g~~g~~G~tH~~~--~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~-~~P 471 (621)
T 2o1s_A 399 -AYDQVLHDV-AI--QKLPVLFAIDRAGIVGADGQTHQGA--FDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN-DGP 471 (621)
T ss_dssp -GHHHHHHTT-TT--TTCCCEEEEESCBCCCTTCGGGCBC--SHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC-SSC
T ss_pred -HHHHHHHHH-Hh--cCCCEEEEEECCccCCCCCCccCch--HHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC-CCC
Confidence 599998763 33 35799999998 4555 68999975 4333446778999999999999999999999872 399
Q ss_pred EEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCC
Q psy9579 727 LIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPF 806 (887)
Q Consensus 727 lv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~ 806 (887)
++|++||..+... ..+.-.++..|++ .+++++++| +|||||.+++.+++| ++| ++++|||+++|+||
T Consensus 472 v~i~~~r~~~~~~-~~~~~~~~~~G~~-------~~~~~g~dv--~iva~G~~~~~a~~A--~~G-i~v~Vi~~~~~~P~ 538 (621)
T 2o1s_A 472 SAVRYPRGNAVGV-ELTPLEKLPIGKG-------IVKRRGEKL--AILNFGTLMPEAAKV--AES-LNATLVDMRFVKPL 538 (621)
T ss_dssp EEEECCSSBCCCC-CCCCCCCCCTTCC-------EEEECCSSE--EEEEESTTHHHHHHH--HHH-HTCEEEECCEEESC
T ss_pred EEEEeCCCCCCCC-CCCccccccCCce-------EEeecCCCE--EEEEecHHHHHHHHH--cCC-CCEEEEecCccCCC
Confidence 9999999877431 1111022333433 233456666 899999988888777 446 69999999999999
Q ss_pred CHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCC-CCCCCC--chhhHHHHHHHHHHH
Q psy9579 807 PNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCS-ASPASG--YYSKHCKEQITLLNN 883 (887)
Q Consensus 807 ~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~-~~~a~g--~~~~h~~~~~~i~~~ 883 (887)
|.+.|.+++++|++ +|||+|....+|++.+|...+.+... ..+++.+|-+.. .+.+.. +.+.+....++|++.
T Consensus 539 d~~~i~~~~~~~~~---vv~vEe~~~~gg~g~~v~~~l~~~~~-~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~ 614 (621)
T 2o1s_A 539 DEALILEMAASHEA---LVTVEENAIMGGAGSGVNEVLMAHRK-PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAK 614 (621)
T ss_dssp CHHHHHHHHHHCSE---EEEEEEEESTTSHHHHHHHHHHHTTC-CCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHH
T ss_pred CHHHHHHHHccCCe---EEEEECCCCCCCHHHHHHHHHHhcCC-CCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 99999999999987 79998888888999999999877521 256777776443 333332 445555566667665
Q ss_pred h
Q psy9579 884 A 884 (887)
Q Consensus 884 a 884 (887)
+
T Consensus 615 i 615 (621)
T 2o1s_A 615 I 615 (621)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.1e-49 Score=471.85 Aligned_cols=485 Identities=15% Similarity=0.124 Sum_probs=346.4
Q ss_pred CCCcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCC
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSP 342 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~ 342 (887)
...|+|...|.|+|+|+|.++.+. .+..++|++|||++ .+|.+||+||+|+. |++|-+|+|+.||+|+++++.
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~----~~~~vv~v~GDG~~-~eG~~~Eal~~A~~--~~l~~livi~nnN~~~i~~~~ 191 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDK----ASYRVYCLLGDGEL-SEGSVWEAMAFASI--YKLDNLVAILDINRLGQSDPA 191 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSC----CSCCEEEEEETGGG-GSHHHHHHHHHHHH--TTCTTEEEEEEECSBCSSSBC
T ss_pred cccccCCccHHHHHHHHHHHHhCC----CCCEEEEEECcccc-ccCcHHHHHHHHHH--cCCCcEEEEEECCCCCCcCCc
Confidence 346788889999999999987543 24679999999999 99999999999999 999989999999999999987
Q ss_pred CCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHHHhh
Q psy9579 343 NDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFK 422 (887)
Q Consensus 343 ~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~i~~ 422 (887)
....+...+.+++++||+++++|||+|++++..|.+.| .++|+||++.|+|..||+..++|. . .
T Consensus 192 ~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~~-----~-----~ 255 (616)
T 3mos_A 192 PLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDKE-----S-----W 255 (616)
T ss_dssp TTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTCS-----S-----C
T ss_pred ccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccCch-----h-----h
Confidence 77665567788999999999999999999999988543 589999999999999998877652 1 1
Q ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccCccccccccccCCCCCCCCCccCHHHHH
Q psy9579 423 HPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSI-PSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLK 501 (887)
Q Consensus 423 ~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~ 501 (887)
|..| +++++++++.+++++.+++. +.. +...........|... . .
T Consensus 256 Hg~~-------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------~--~------ 301 (616)
T 3mos_A 256 HGKP-------------LPKNMAEQIIQEIYSQIQSK----KKILATPPQEDAPSVDIANI---------R--M------ 301 (616)
T ss_dssp TTCC-------------CCHHHHHHHHHHHHHTCCCC----CCCCCBCCCCCCCCCCCSCC---------C--C------
T ss_pred cCCC-------------CCHHHHHHHHHHHHHHHHhh----hhhCcCccchhhhhhhhhcc---------c--c------
Confidence 2222 45566665555443322110 111 1000000000001100 0 0
Q ss_pred HHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeecccc
Q psy9579 502 FLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDY 581 (887)
Q Consensus 502 ~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~ 581 (887)
.. |+.|+. +..+....+-..+...++.++++|++.|+|+..|||
T Consensus 302 ------~~-~~~~~~-----------------~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~------------ 345 (616)
T 3mos_A 302 ------PS-LPSYKV-----------------GDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTF------------ 345 (616)
T ss_dssp ------SS-CCCCCT-----------------TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHS------------
T ss_pred ------CC-Cccccc-----------------ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcc------------
Confidence 00 111210 011222223333445678999999999999998877
Q ss_pred ccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHH
Q psy9579 582 QYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEK 661 (887)
Q Consensus 582 ~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~k 661 (887)
++ .+.++| +.|++|+||||.+++|+++|+|+.|.+ +++++||++|+.-| +||++..+..
T Consensus 346 -------~~-------~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~--~~~~~~f~~Fl~~a---~dqi~~~a~~- 404 (616)
T 3mos_A 346 -------SE-------IFKKEH-PDRFIECYIAEQNMVSIAVGCATRNRT--VPFCSTFAAFFTRA---FDQIRMAAIS- 404 (616)
T ss_dssp -------HH-------HHHHHC-GGGEEECCSCHHHHHHHHHHHHGGGCC--EEEEEEEGGGGGGG---HHHHHHHHHT-
T ss_pred -------hh-------hHHHhC-CCCeEEcCccHHHHHHHHHHHHHcCCC--CEEEEehHHHHHHH---HHHHHHHHHh-
Confidence 22 455555 679999999999999999999999963 68999999999655 9999875432
Q ss_pred hcCccCcEEEecc-cC--CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEcccccccc
Q psy9579 662 WGRISGLTLMLPH-GY--EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRK 738 (887)
Q Consensus 662 w~~~sglv~~lP~-G~--~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~ 738 (887)
..++++.+.| |. +..||.|++.--++|| ++.|||+|+.|+||.+++++|+.++..+ .|+++..++.- .
T Consensus 405 ---~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l--~~iP~l~V~~P~d~~e~~~~l~~a~~~~--gp~~ir~~r~~--~ 475 (616)
T 3mos_A 405 ---ESNINLCGSHCGVSIGEDGPSQMALEDLAMF--RSVPTSTVFYPSDGVATEKAVELAANTK--GICFIRTSRPE--N 475 (616)
T ss_dssp ---TCCEEEEEESBSGGGCTTCGGGCBSSHHHHH--HTSTTEEEECCCSHHHHHHHHHHHHTCC--SEEEEECCSSC--C
T ss_pred ---CCCeEEEEECCCccccCCCCcccCHHHHHHh--cCCCCCEEEecCCHHHHHHHHHHHHhcC--CCEEEEEeCCC--C
Confidence 2467777766 44 3358999765555776 6778999999999999999999998654 89888666431 1
Q ss_pred CCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHH
Q psy9579 739 KEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILK 816 (887)
Q Consensus 739 ~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~ 816 (887)
+....+..++. ++++.+++++++.+.+|||||.+++.+++|++++ ..++++|||+|+|+|||.++|.++++
T Consensus 476 p~~~~~~~~~~-------~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~ 548 (616)
T 3mos_A 476 AIIYNNNEDFQ-------VGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSAR 548 (616)
T ss_dssp BCCSCTTCCCC-------TTCCEEEECCSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHH
T ss_pred CccCCCccccc-------CCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHH
Confidence 11011112232 3444444566775669999999888887776543 23699999999999999999999999
Q ss_pred hc-CCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCCCCCch----hhHHHHHHHHHHHh
Q psy9579 817 KF-RYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYY----SKHCKEQITLLNNA 884 (887)
Q Consensus 817 k~-~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~a~g~~----~~h~~~~~~i~~~a 884 (887)
|| ++ +|+|+|...++|++++|...|.+.. ..+++.+|-+.- +..|.. +.+....+.|++.+
T Consensus 549 ~~~~~---vvvvEe~~~~GG~G~~v~~~l~~~~--~~~v~~~g~~~f--~~~g~~~~l~~~~gl~~~~I~~~i 614 (616)
T 3mos_A 549 ATKGR---ILTVEDHYYEGGIGEAVSSAVVGEP--GITVTHLAVNRV--PRSGKPAELLKMFGIDRDAIAQAV 614 (616)
T ss_dssp HTTTE---EEEEEEEESTTSHHHHHHHHHTTCT--TCEEEEEEECSC--CCCSCHHHHHHHTTCSHHHHHHHH
T ss_pred hcCCE---EEEEcCCCCCcCHHHHHHHHHHhcC--CCCEEEEeCCCC--CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 99 66 7999999999999999999998753 357888887742 334432 33334455666554
No 11
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.4e-47 Score=455.53 Aligned_cols=537 Identities=15% Similarity=0.137 Sum_probs=374.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----CCchhHHHHHHHHHHHhhcCC-CCcEEecCCccchH---
Q psy9579 137 PNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSL----EGSESFILSLNEIIQHSGKRG-IREIVIGMAHRGRL--- 208 (887)
Q Consensus 137 ~~ls~e~~~~~l~~M~~ar~fE~~l~~~~~~~krfg~----eG~Ea~~vgl~~~i~~a~al~-~~D~v~gm~HRgr~--- 208 (887)
..++.+++.++++.| |.+ +.+.+. +..|. .|+=.+..++ . ..+. ++|+++. . |||.
T Consensus 23 ~~l~~~~l~~l~~~i---R~~---~~~~~~--~~~Gh~~~~lg~v~l~~aL----~--~~~~~~~D~~v~-~-~GH~~y~ 86 (629)
T 2o1x_A 23 KRLSREQLPALTEEL---RGE---IVRVCS--RGGLHLASSLGAVDIITAL----H--YVLDSPRDRILF-D-VGHQAYA 86 (629)
T ss_dssp TTSCGGGHHHHHHHH---HHH---HHHHHT--TSSSCHHHHHHTHHHHHHH----H--HHSCTTTSEEEE-S-SSTTCHH
T ss_pred hhCCHHHHHHHHHHH---HHH---HHHHHH--hcCCcCCCchhHHHHHHHH----H--hhcCCCCCeEEe-c-CchHHHH
Confidence 357888999999888 432 333332 22222 5552222222 1 1235 7899996 6 9995
Q ss_pred HHHHHHhCC-CHHHHHHHccCCCCCCCCCCCcccccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhccC
Q psy9579 209 NVLVNILGK-KPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDD 287 (887)
Q Consensus 209 ~~L~n~~G~-~~~~if~e~~G~~~~~~~~GDvkyHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~~ 287 (887)
+.+ ..|. +.-..|+++.|.. | ++ + ..+++|+ .....|+|...|.|+|+|+|.++++.
T Consensus 87 ~~~--l~G~~~~~~~~r~~~g~~-G------------~p---~-~~~s~~~--~~~~G~~G~gl~~AvG~AlA~k~~~~- 144 (629)
T 2o1x_A 87 HKI--LTGRRDQMADIKKEGGIS-G------------FT---K-VSESEHD--AITVGHASTSLTNALGMALARDAQGK- 144 (629)
T ss_dssp HHH--TTTTGGGGGGTTSTTSCC-S------------SC---C-GGGCTTC--CSCCSSSSCHHHHHHHHHHHHHHHTC-
T ss_pred HHH--HhCcHhHHhCcccCCCCC-C------------CC---C-CCCCCCC--CcCCCcccccHhHHHHHHHHHHHhCC-
Confidence 444 4554 3333455554431 2 22 1 1123333 24457899999999999999998875
Q ss_pred CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccC-------------------
Q psy9579 288 KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRST------------------- 348 (887)
Q Consensus 288 ~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss------------------- 348 (887)
+..++|++|||++ .+|.+||+||+|+. |++| +|+||.||+|+++++...+...
T Consensus 145 ----~~~Vv~v~GDG~~-~~G~~~EaL~~A~~--~~~p-li~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~ 216 (629)
T 2o1x_A 145 ----DFHVAAVIGDGSL-TGGMALAALNTIGD--MGRK-MLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKK 216 (629)
T ss_dssp ----CCCEEEEEETTGG-GSHHHHHHHHHHHH--HCCS-EEEEEEECSBSSSBCCSSHHHHC------------------
T ss_pred ----CCeEEEEEchhhh-hccHHHHHHHHHHh--hCCC-EEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHH
Confidence 7789999999999 99999999999999 9999 9999999999999876532110
Q ss_pred -----------------Ccc------c--ccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCC
Q psy9579 349 -----------------LYC------T--DIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLG 402 (887)
Q Consensus 349 -----------------~~~------s--d~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~G 402 (887)
.++ . .++++||++++ +|||+|++++..+.+.|. +.++|+||++.|++-.|
T Consensus 217 ~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~----~~~~P~lI~v~t~kg~G 292 (629)
T 2o1x_A 217 AVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLV----DLDGPTILHIVTTKGKG 292 (629)
T ss_dssp ---------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHT----TSSSEEEEEEECCTTTT
T ss_pred HHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHH----hcCCCEEEEEEEecCCC
Confidence 113 3 78999999999 999999999998888774 45899999999999999
Q ss_pred CCCC-CCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCccccccc
Q psy9579 403 HNEQ-DTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAP 481 (887)
Q Consensus 403 Hne~-DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~ 481 (887)
|+.. .+| .. | |.-+ + -.
T Consensus 293 ~~~~e~~~-----~~----~-H~~~----------------------------------------~-f~----------- 310 (629)
T 2o1x_A 293 LSYAEADP-----IY----W-HGPA----------------------------------------K-FD----------- 310 (629)
T ss_dssp CHHHHHCT-----TG----G-GSCC----------------------------------------S-BC-----------
T ss_pred CChhHcCC-----cc----c-ccCc----------------------------------------c-CC-----------
Confidence 9511 111 01 1 1111 0 00
Q ss_pred cccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEec
Q psy9579 482 FLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSG 561 (887)
Q Consensus 482 ~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~G 561 (887)
.+++.. |.. . ...|..+=.-+...+++++++|++.+
T Consensus 311 ---------~~~~~~--------------~~~-~--------------------~~~~~~~~~~~l~~~~~~d~~v~~i~ 346 (629)
T 2o1x_A 311 ---------PATGEY--------------VPS-S--------------------AYSWSAAFGEAVTEWAKTDPRTFVVT 346 (629)
T ss_dssp ---------TTTCCB--------------CCC-C--------------------CCBHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred ---------cCcCcc--------------ccc-c--------------------hHHHHHHHHHHHHHHhhhCcCEEEEe
Confidence 001100 000 0 01111111111224677899999999
Q ss_pred ccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeecc
Q psy9579 562 QDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFG 641 (887)
Q Consensus 562 eDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFg 641 (887)
+|+..|+ + +.++.++| +.|++|++|||.+++|++.|+|+.|.+ |+++. |.
T Consensus 347 ~d~~~~~---------------------~-----~~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~r--p~~~~-~~ 396 (629)
T 2o1x_A 347 PAMREGS---------------------G-----LVEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMR--PVVAI-YS 396 (629)
T ss_dssp SSCTTTT---------------------T-----CHHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCE--EEEEE-EH
T ss_pred ccccCCc---------------------C-----hHHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCE--EEEEe-cH
Confidence 9997653 1 23566777 789999999999999999999999976 78899 99
Q ss_pred ccccchhHHHHHHHhhHHHHhcCccCcEEEecccC-CC-CCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHH
Q psy9579 642 DFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY-EG-QGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQI 719 (887)
Q Consensus 642 DF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~-~g-~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~ 719 (887)
+|+..| +||+++.. ++ ...++|++.+||. .| -||.||+.--.++| .+.|||+|+.|+||.+++++|+.++
T Consensus 397 ~F~~~a---~dqi~~~~-a~--~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~--r~iP~l~v~~P~d~~e~~~~~~~a~ 468 (629)
T 2o1x_A 397 TFLQRA---YDQVLHDV-AI--EHLNVTFCIDRAGIVGADGATHNGVFDLSFL--RSIPGVRIGLPKDAAELRGMLKYAQ 468 (629)
T ss_dssp HHHGGG---HHHHHHTT-TT--TTCCCEEEEESBBCCCTTCTTTCBCSHHHHT--TTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHH-hh--cCCCEEEEEECCccCCCCCcccCccHHHHHH--HccCCcEEEecCCHHHHHHHHHHHH
Confidence 998654 99998753 33 3478999999854 45 48999986333666 5668999999999999999999999
Q ss_pred hCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEe
Q psy9579 720 IRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIR 799 (887)
Q Consensus 720 ~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~ 799 (887)
+.+ +|++|.+||..+... ......++ +++...+++++.+| +||+||.++...++|++++. ++.||+
T Consensus 469 ~~~--~Pv~i~~~r~~~~~~-~~~~~~~~-------~~G~~~~~~~g~dv--~iva~G~~v~~a~~Aa~~L~--~~~Vi~ 534 (629)
T 2o1x_A 469 THD--GPFAIRYPRGNTAQV-PAGTWPDL-------KWGEWERLKGGDDV--VILAGGKALDYALKAAEDLP--GVGVVN 534 (629)
T ss_dssp HSS--SCEEEECCSSBCCCC-CTTCCCCC-------CTTCCEEEECCSSE--EEEECHHHHHHHHHHHTTCT--TEEEEE
T ss_pred hCC--CCEEEEecCCCCCCC-cccccccc-------cCCceEEEeeCCCE--EEEEecHHHHHHHHHHHHhc--CCEEEe
Confidence 875 999999998766321 10111112 23333344466666 89999998888888777665 999999
Q ss_pred ccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecCCCCCCC-CCC--chhhHHHH
Q psy9579 800 IEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGRSCSASP-ASG--YYSKHCKE 876 (887)
Q Consensus 800 l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr~~~~~~-a~g--~~~~h~~~ 876 (887)
++++.|||.++|.++++++++ +|+|+|....+|++.+|...+.+... ..+++.+|-+....+ +.. +.+.+...
T Consensus 535 ~~~~~Pld~~~i~~~~~~~~~---vv~vEe~~~~gG~g~~v~~~l~~~~~-~~~v~~ig~~d~f~~~g~~~~l~~~~gl~ 610 (629)
T 2o1x_A 535 ARFVKPLDEEMLREVGGRARA---LITVEDNTVVGGFGGAVLEALNSMNL-HPTVRVLGIPDEFQEHATAESVHARAGID 610 (629)
T ss_dssp CCEEESCCHHHHHHHHHHCSE---EEEEEEEESSSSHHHHHHHHHHHTTC-CCEEEEEEECSSCCCSCCHHHHHHHHTCS
T ss_pred eCCCCCCcHHHHHHHHhhCCc---EEEEecCCCCCCHHHHHHHHHHHhCC-CCCeEEEeeCCcCCCCCCHHHHHHHHCcC
Confidence 999999999999999999987 79999999999999999999987521 357777777543332 222 34555556
Q ss_pred HHHHHHHhh
Q psy9579 877 QITLLNNAF 885 (887)
Q Consensus 877 ~~~i~~~a~ 885 (887)
.+.|++.+.
T Consensus 611 ~~~I~~~i~ 619 (629)
T 2o1x_A 611 APAIRTVLA 619 (629)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677776653
No 12
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=8.7e-44 Score=393.58 Aligned_cols=312 Identities=16% Similarity=0.164 Sum_probs=261.7
Q ss_pred cccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccch
Q psy9579 536 NVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSE 615 (887)
Q Consensus 536 ~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE 615 (887)
.++|..+...++..++.++++|++.|+|+++ ++++|.++.++.++||+.|++|++|||
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~----------------------~~g~~~~~~~~~~~~gp~r~~~~gisE 61 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGY----------------------FGGVFRCTEGLQTKYGKSRVFDAPISE 61 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSS----------------------SCCTTSTTTTHHHHHCTTTEEECCSCH
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccc----------------------cCCcchhHHHHHHHhCCCcEEEccccH
Confidence 3678888889999999999999999999986 445567788999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhh-HHHHhc----CccCcEEEecccCCCCCccccCchHHH
Q psy9579 616 EAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISS-SEEKWG----RISGLTLMLPHGYEGQGPEHSSARLER 690 (887)
Q Consensus 616 ~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~-~~~kw~----~~sglv~~lP~G~~g~GpeHSs~r~Er 690 (887)
.+++|+++|+|+.|.+ |+||+||++|++ .++||+++. +..||. ...++|+++|||+.+.||.|||++.++
T Consensus 62 ~~~~~~a~G~A~~G~r--p~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~~~G~th~s~~d~~ 136 (338)
T 1qs0_B 62 SGIVGTAVGMGAYGLR--PVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEA 136 (338)
T ss_dssp HHHHHHHHHHHHHTCE--EEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHH
T ss_pred HHHHHHHHHHHhCCCE--EEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCCCCCcccccccHHH
Confidence 9999999999999975 899999999984 569999965 345564 357999999999988999999999999
Q ss_pred HHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCC---CCccc--------cCCCCcceeeccc
Q psy9579 691 FLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEA---SSTLM--------DLATGKFNKIINE 759 (887)
Q Consensus 691 ~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~---~s~~~--------d~~~g~f~~~i~~ 759 (887)
||+ +.|||+|+.||||++++++|+.+++. ++|++|++||.|+|.+.. .++.. +++++.|..++++
T Consensus 137 ~l~--~iP~l~V~~Psd~~e~~~~l~~A~~~--~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 212 (338)
T 1qs0_B 137 MFT--QVCGLRTVMPSNPYDAKGLLIASIEC--DDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDK 212 (338)
T ss_dssp HHT--TSTTCEEECCCSHHHHHHHHHHHHHS--SSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTC
T ss_pred HHh--cCCCCEEEeeCCHHHHHHHHHHHHhc--CCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCc
Confidence 997 55799999999999999999999986 499999999999997544 22322 2333345555666
Q ss_pred cccccCCCCceEEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHH
Q psy9579 760 IDDIIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQ 839 (887)
Q Consensus 760 ~~~~~~~~~v~r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~ 839 (887)
+.+++++.++ +|||+|.+++.+++++++.| ++++|||+++|+|||.++|.+++++|++ +|||+|...++|+|++
T Consensus 213 ~~~~~~g~dv--~iva~G~~~~~a~~Aa~~~G-i~v~vi~~~~l~P~d~~~i~~~~~~~~~---vvvvEe~~~~gG~g~~ 286 (338)
T 1qs0_B 213 AAITRPGNDV--SVLTYGTTVYVAQVAAEESG-VDAEVIDLRSLWPLDLDTIVESVKKTGR---CVVVHEATRTCGFGAE 286 (338)
T ss_dssp CCEEECCSSC--EEEECTTHHHHHHHHHHHHC-CCCEEEECSEEESCCHHHHHHHHHHHSC---EEEEESSCSTTSTHHH
T ss_pred eeEecCCCCE--EEEEeCHHHHHHHHHHHHcC-CCEEEEeecccCCCCHHHHHHHHhcCCE---EEEEecCCcCCcHHHH
Confidence 6555566666 89999999888888777655 6999999999999999999999999987 7999999999999999
Q ss_pred HHHHHHHhhcc--CCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhh
Q psy9579 840 IKENILKYLNS--TQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885 (887)
Q Consensus 840 i~~~i~~~~~~--~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~ 885 (887)
|...+.+.... ..+++++|.++...|.. +.+.+....++|++.+.
T Consensus 287 V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~-l~~~~g~~~~~I~~~i~ 333 (338)
T 1qs0_B 287 LVSLVQEHCFHHLEAPIERVTGWDTPYPHA-QEWAYFPGPSRVGAALK 333 (338)
T ss_dssp HHHHHHHHSSSSCCSCCEEEECCSSCCCST-THHHHSCCHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEecCCcCCcHH-HHHHHCCCHHHHHHHHH
Confidence 99999876321 35678888876655555 89999999999988764
No 13
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=6.6e-44 Score=395.18 Aligned_cols=307 Identities=15% Similarity=0.118 Sum_probs=246.1
Q ss_pred cccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccch
Q psy9579 536 NVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSE 615 (887)
Q Consensus 536 ~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE 615 (887)
..+|+++|+| .+++.++++|+++|+|+++ ++++|.+|+++.++||+.|++|++|||
T Consensus 16 ~~~~a~~~~L--~~l~~~~~~vv~~~~D~~~----------------------~g~~~~~~~~~~~~~gp~r~~d~gIaE 71 (341)
T 2ozl_B 16 TVRDAINQGM--DEELERDEKVFLLGEEVAQ----------------------YDGAYKVSRGLWKKYGDKRIIDTPISE 71 (341)
T ss_dssp EHHHHHHHHH--HHHHHHCTTEEEEETTSST----------------------TCCTTSTTTTHHHHHCTTTEEECCSCH
T ss_pred cHHHHHHHHH--HHHHhhCCCEEEECCcccc----------------------cCCcchhHHHHHHHhCCCcEEECchhH
Confidence 4689999988 5999999999999999997 344456788999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcC------ccCcEEEecccCCC-CCccccCchH
Q psy9579 616 EAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGR------ISGLTLMLPHGYEG-QGPEHSSARL 688 (887)
Q Consensus 616 ~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~------~sglv~~lP~G~~g-~GpeHSs~r~ 688 (887)
.+++|+++|+|+.|.+ |+||+||+||+ |.++||++++. +||++ ..++|+++|||+.| .||+|| +++
T Consensus 72 ~~~v~~a~G~A~~G~r--p~~~~~f~~F~---~~a~dqi~~~~-a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs-~~~ 144 (341)
T 2ozl_B 72 MGFAGIAVGAAMAGLR--PICEFMTFNFS---MQAIDQVINSA-AKTYYMSGGLQPVPIVFRGPNGASAGVAAQHS-QCF 144 (341)
T ss_dssp HHHHHHHHHHHHTTCE--EEEECSSGGGG---GGGHHHHHTTT-TTHHHHTTSSCCCCCEEEEECSCCSSCCGGGC-CCC
T ss_pred HHHHHHHHHHHHCCCE--EEEEeccHHHH---HHHHHHHHHHH-HHHHhhccccCCCCEEEEEcCcCCCCCCcchh-hHH
Confidence 9999999999999964 89999999999 45699999875 89984 56799999999766 799996 568
Q ss_pred HHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCC
Q psy9579 689 ERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKK 768 (887)
Q Consensus 689 Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~ 768 (887)
|++| ++.|||+|++|+||++++++|+++++.+ +|++|++||.||+++.++++ ++.++.|...++++.+++++.+
T Consensus 145 ea~l--~~iP~l~V~~Psd~~e~~~~l~~a~~~~--~Pv~i~~~~~~~~~~~~v~p--~~~~~~~~~~~Gk~~v~~~g~d 218 (341)
T 2ozl_B 145 AAWY--GHCPGLKVVSPWNSEDAKGLIKSAIRDN--NPVVVLENELMYGVPFEFPP--EAQSKDFLIPIGKAKIERQGTH 218 (341)
T ss_dssp HHHH--HTSTTCEEECCCSHHHHHHHHHHHHHSS--SCEEEEECHHHHTCEEECCH--HHHSTTCCCCTTCCEEEECCSS
T ss_pred HHHh--ccCCCCEEEEeCCHHHHHHHHHHHHhcC--CCEEEEEChhhhcCCCCcCC--ccCCccccccCCceEEeccCCC
Confidence 9876 6788999999999999999999999864 99999999999987655431 1112234344555544455665
Q ss_pred ceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHH
Q psy9579 769 IKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILK 846 (887)
Q Consensus 769 v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~ 846 (887)
+ +|||||.+++.+++|++++ ..+++.||++++|+|||.+.|.++++++++ +|||+|...++|+|.+|.+.+.+
T Consensus 219 v--~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~~l~P~d~~~i~~~~~~~~~---vv~vEe~~~~Gg~g~~v~~~l~~ 293 (341)
T 2ozl_B 219 I--TVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNH---LVTVEGGWPQFGVGAEICARIME 293 (341)
T ss_dssp E--EEEECSTHHHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHHHHHHHHSC---EEEECSSCSTTCHHHHHHHHHHH
T ss_pred E--EEEEeCHHHHHHHHHHHHHHhcCCCeEEEeeeeecCCCHHHHHHHHhcCCe---EEEEecCcccCcHHHHHHHHHHh
Confidence 5 8999999999888877643 226999999999999999999999999987 79998888889999999999987
Q ss_pred -hhc--cCCcEEEecCCCCCCC-CCCchhhHHHHHHHHHHHh
Q psy9579 847 -YLN--STQKLIYVGRSCSASP-ASGYYSKHCKEQITLLNNA 884 (887)
Q Consensus 847 -~~~--~~~~~~~~gr~~~~~~-a~g~~~~h~~~~~~i~~~a 884 (887)
... ...+++++|.++...| +.-+.+.+....++|++.+
T Consensus 294 ~~~~~~l~~~v~~ig~~d~~~~~g~~l~~~~g~~~~~I~~~i 335 (341)
T 2ozl_B 294 GPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAI 335 (341)
T ss_dssp STTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHHHHHHH
T ss_pred hhcccccCCCEEEEecCCcCCCCcHHHHHHhCcCHHHHHHHH
Confidence 532 1357788888654443 2223344444556666554
No 14
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=7.6e-43 Score=386.84 Aligned_cols=305 Identities=19% Similarity=0.228 Sum_probs=252.5
Q ss_pred CcccHHHHHHHHHhHHhhcCCcEEEecccCCC-CcccccceeeeccccccccccCCCcEEecCCCccccCCceEEecccc
Q psy9579 535 LNVDWGMAEHLAYASLVISGYGVRLSGQDSGR-GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSIL 613 (887)
Q Consensus 535 ~~idw~~aE~lA~~sll~~~~~vrl~GeDv~r-GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspL 613 (887)
..++|..+...|+.+++.++++|++.|+|+++ ||| .++.++.++||+.|++|++|
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~------------------------~~~~~~~~~~gp~r~~~~gI 74 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVF------------------------RCTVGLRDKYGKDRVFNTPL 74 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTT------------------------STTTTHHHHHCTTTEEECCS
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCccc------------------------chHHHHHHHhCCCeEEEcCc
Confidence 45889999999999999999999999999986 566 35668889999999999999
Q ss_pred chHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCcc-------CcEEEecccCCCCCccccCc
Q psy9579 614 SEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRIS-------GLTLMLPHGYEGQGPEHSSA 686 (887)
Q Consensus 614 sE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~s-------glv~~lP~G~~g~GpeHSs~ 686 (887)
||.+++|+++|+|+.|.+ |+||+||++|+.- ++||+++.. ++|++++ ++|+++|||+.+.||.|||+
T Consensus 75 aE~~~v~~a~G~A~~G~r--p~~~~tf~~F~~~---a~dqi~~~~-a~~~~~~~g~~~~~pvv~~~~~~g~~~G~th~~~ 148 (342)
T 2bfd_B 75 CEQGIVGFGIGIAVTGAT--AIAEIQFADYIFP---AFDQIVNEA-AKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQ 148 (342)
T ss_dssp CHHHHHHHHHHHHHTTCC--EEEECSSGGGCGG---GHHHHHTTG-GGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSC
T ss_pred CHHHHHHHHHHHHHCCCe--eEEEecchhHHHH---HHHHHHHHH-HHHHhhhcCCccCCCEEEEEecCCCCCCcchhhH
Confidence 999999999999999975 8999999999754 599999663 5666544 99999999888899999999
Q ss_pred hHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCC
Q psy9579 687 RLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDP 766 (887)
Q Consensus 687 r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~ 766 (887)
+.++||. +.|||+|+.||||++++++|+.+++. ++|++|++||.|+|.+....+.++ |...+++..+++++
T Consensus 149 ~d~~~l~--~iP~l~V~~Psd~~e~~~~l~~a~~~--~~Pv~i~~p~~l~r~~~~~~~~~~-----~~~~~G~~~v~~~g 219 (342)
T 2bfd_B 149 SPEAFFA--HCPGIKVVIPRSPFQAKGLLLSCIED--KNPCIFFEPKILYRAAAEEVPIEP-----YNIPLSQAEVIQEG 219 (342)
T ss_dssp CCHHHHH--TSTTCEEECCSSHHHHHHHHHHHHHS--SSCEEEEEEGGGTTSCCEEEESSC-----CCCCSSCCEEEECC
T ss_pred hHHHHHh--cCCCcEEEeeCCHHHHHHHHHHHHhc--CCcEEEEecchhcCCCCCCCCCcc-----cceeCCceEEeccC
Confidence 9999984 66899999999999999999999986 499999999999987543222122 22334444444456
Q ss_pred CCceEEEEEechHHHHHHHHHHHc----CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHH
Q psy9579 767 KKIKRIIACSGKIYYDLFNFRKKK----NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKE 842 (887)
Q Consensus 767 ~~v~r~i~~~G~~~~~l~~~~~~~----~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~ 842 (887)
.++ +|||||.+++.+++|++++ | ++++|||+++|+|||.++|.+++++|++ +|||+|.+.++|+|++|.+
T Consensus 220 ~dv--~iia~G~~~~~a~~Aa~~L~~~~G-i~v~vi~~~~l~P~d~~~i~~~~~~~~~---vv~vEe~~~~gg~g~~v~~ 293 (342)
T 2bfd_B 220 SDV--TLVAWGTQVHVIREVASMAKEKLG-VSCEVIDLRTIIPWDVDTICKSVIKTGR---LLISHEAPLTGGFASEISS 293 (342)
T ss_dssp SSE--EEEECTTHHHHHHHHHHHHHHHHC-CCEEEEECCEEESCCHHHHHHHHHHHSC---EEEEEEEESTTCHHHHHHH
T ss_pred CCE--EEEEECHHHHHHHHHHHHHHhhcC-CCEEEEeeeecCCCCHHHHHHHHhcCCE---EEEEEeCccCCcHHHHHHH
Confidence 666 8999999999888877653 5 6999999999999999999999999997 7999999889999999999
Q ss_pred HHHHhhc--cCCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhh
Q psy9579 843 NILKYLN--STQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885 (887)
Q Consensus 843 ~i~~~~~--~~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~ 885 (887)
.+.+... ...+++++|.+....|.. +.+.+....++|++.+.
T Consensus 294 ~l~~~~~~~l~~~v~~vg~~d~~~~~~-l~~~~gl~~~~I~~~i~ 337 (342)
T 2bfd_B 294 TVQEECFLNLEAPISRVCGYDTPFPHI-FEPFYIPDKWKCYDALR 337 (342)
T ss_dssp HHHHHHGGGCSSCCEEEEECSSCCCST-THHHHSCCHHHHHHHHH
T ss_pred HHHhhCccccCCCeEEEecCCCCChHH-HHHHHCcCHHHHHHHHH
Confidence 9987532 135667777766444433 88888788888887653
No 15
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.1e-41 Score=407.68 Aligned_cols=467 Identities=13% Similarity=0.063 Sum_probs=305.0
Q ss_pred cCCCcccccccccchhHHHHHhhcc---C--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRD---D--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI 336 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~---~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~ 336 (887)
...+++|...|.|+|+|+|.++.+. . ..-.+..++|++|||++ .+|.+||+||+|.. |++|-+|+||.||+|
T Consensus 113 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~-~eG~~~Eal~~A~~--~~L~~li~i~~nN~~ 189 (680)
T 1gpu_A 113 VTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCL-QEGISSEASSLAGH--LKLGNLIAIYDDNKI 189 (680)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECSE
T ss_pred eccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCcc-chhhHHHHHHHHHH--hCCCcEEEEEECCCc
Confidence 3447889999999999999987651 0 01126789999999999 99999999999999 999999999999999
Q ss_pred eeccCCCCcccCCcccccccccCCcEE-EEcCC-CHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCC---CC
Q psy9579 337 GFTTSPNDLRSTLYCTDIGKIIEAPVF-HVNGD-DPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTP---SL 411 (887)
Q Consensus 337 g~ST~~~~~rss~~~sd~Ak~~giP~~-~VdG~-D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP---~~ 411 (887)
+++++...+. +....+++++||++++ .|||+ |+++++.|++.|.+ ..++|+||++.|+|.+||++.|.+ ..
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~ 265 (680)
T 1gpu_A 190 TIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGA 265 (680)
T ss_dssp ETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSS
T ss_pred eEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCC
Confidence 9999876543 4677889999999999 99999 99999999998876 468899999999999999988754 11
Q ss_pred CC-hHhhHHHhhCCCHH-------------HHHHHHHHHcCCCCHHHHHHHHHHHHHH------HHHHHHHhhcCCCCCC
Q psy9579 412 TQ-PLMYKKIFKHPGIR-------------ELYSNKLKIQKILTKNESENMIKEFNDM------INSGKSIVNSIPSNFI 471 (887)
Q Consensus 412 tq-p~~Yr~i~~~~dpi-------------~~y~~~Li~~Gi~t~~e~~~i~~~~~~~------l~~a~~~a~~~~~~~~ 471 (887)
+. +..++. |+..++. ..|.+.+.++| +....++.+.+.+. +.+.++...+...+
T Consensus 266 ~~~~ee~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p-- 339 (680)
T 1gpu_A 266 PLKADDVKQ-LKSKFGFNPDKSFVVPQEVYDHYQKTILKPG---VEANNKWNKLFSEYQKKFPELGAELARRLSGQLP-- 339 (680)
T ss_dssp CCCHHHHHH-HHHHTTCCTTCCSCCCHHHHHHHHHHTHHHH---HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCC--
T ss_pred CCCHHHHHH-HHHHcCCCcCCCccCCHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCC--
Confidence 21 222221 1111111 11111000111 00001111111111 11111111111111
Q ss_pred ccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHh
Q psy9579 472 YDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLV 551 (887)
Q Consensus 472 ~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll 551 (887)
..|... +| .|. ..+..+....|=..+...++
T Consensus 340 -----~~~~~~---------------------------~~-~~~----------------~~~~~~a~r~a~~~~L~~~~ 370 (680)
T 1gpu_A 340 -----ANWESK---------------------------LP-TYT----------------AKDSAVATRKLSETVLEDVY 370 (680)
T ss_dssp -----TTGGGG---------------------------SC-CCC----------------TTSCCBCHHHHHHHHHHHHT
T ss_pred -----chhhhh---------------------------ch-hhc----------------cCCcchHHHHHHHHHHHHHH
Confidence 112210 01 000 00001111111111233467
Q ss_pred hcCCcEEEecccCCC--CcccccceeeeccccccccccCCC-cEEecCCCccccCCceEEeccccchHHHHHHHHhhccC
Q psy9579 552 ISGYGVRLSGQDSGR--GTFSHRHAILYNQDYQYSEKETDI-STYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTA 628 (887)
Q Consensus 552 ~~~~~vrl~GeDv~r--GtFshRHav~~dq~~~~~~~~~~~-~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~ 628 (887)
..+++|++.|+|++. +||. .+ +.|....++..+| +.|++|++|+|.+++|++.|+|+.
T Consensus 371 ~~~p~v~~~~aDl~~s~~~~~------------------~g~~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~a~GlA~~ 431 (680)
T 1gpu_A 371 NQLPELIGGSADLTPSNLTRW------------------KEALDFQPPSSGSGNY-SGRYIRYGIREHAMGAIMNGISAF 431 (680)
T ss_dssp TTCTTEEEEESSCHHHHTCSC------------------TTCCEECCTTTSSEET-TCCEEECCSCHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeccccccccccc------------------ccccccccccccccCC-CCceecCCccHHHHHHHHHHHHhc
Confidence 789999999999986 4430 11 2344333444477 789999999999999999999999
Q ss_pred C-CCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cC--CCCCccccCchHH--HHHhhhcCCCcEE
Q psy9579 629 S-PNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GY--EGQGPEHSSARLE--RFLQLCANNNIQI 702 (887)
Q Consensus 629 ~-~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~--~g~GpeHSs~r~E--r~lq~~~~~nl~V 702 (887)
| .+ +|++ ++|.+|+.-+ .||+-..+- ...++|++++| |. +.-||.|.+ +| .+| .+.|||+|
T Consensus 432 Gg~~-~P~~-~~f~~F~~~~---~~air~~a~----~~lpvv~v~t~~g~g~G~dG~tHq~--~edla~l--r~iP~l~V 498 (680)
T 1gpu_A 432 GANY-KPYG-GTFLNFVSYA---AGAVRLSAL----SGHPVIWVATHDSIGVGEDGPTHQP--IETLAHF--RSLPNIQV 498 (680)
T ss_dssp CTTC-EEEE-EEEHHHHGGG---HHHHHHHHH----HTCCCEEEEECCSGGGCTTCTTTCC--SSHHHHH--HTSSSCEE
T ss_pred CCCc-eEEE-eehHHHHHHH---HHHHHHHHh----cCCCEEEEEeCCccccCCCCCccCC--HHHHHHh--cCCCCCEE
Confidence 8 54 1577 5677776544 566432222 23689999876 33 236899954 67 555 57789999
Q ss_pred EcCCCHhHHHHHHHHHHhC-CCCCcEEEEccccccccCCCCCccccCCCCcce-eeccccccccCC--CCceEEEEEech
Q psy9579 703 VQPTSASQIFHLLRYQIIR-PIRKPLIIITPKSLLRKKEASSTLMDLATGKFN-KIINEIDDIIDP--KKIKRIIACSGK 778 (887)
Q Consensus 703 ~~pstpa~~~hlLr~q~~~-~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~-~~i~~~~~~~~~--~~v~r~i~~~G~ 778 (887)
+.|++|.++.++|+.+++. + +|++|+.||.-+..- ....+. ..++ +.+++++ .+| +||+||.
T Consensus 499 ~~Pad~~e~~~~l~~A~~~~~--~Pv~i~~~r~~~~~~---------~~~~~~~~~~G-~~vl~~g~~~dv--tiva~G~ 564 (680)
T 1gpu_A 499 WRPADGNEVSAAYKNSLESKH--TPSIIALSRQNLPQL---------EGSSIESASKG-GYVLQDVANPDI--ILVATGS 564 (680)
T ss_dssp ECCCSHHHHHHHHHHHHHCSS--CCEEEECCSSCBCCC---------TTCCHHHHTTS-CEEEECCSSCSE--EEEECTH
T ss_pred EecCCHHHHHHHHHHHHHhCC--CcEEEEecCCCCCCC---------CCcchhhccCC-CEEEecCCCCCE--EEEEEcH
Confidence 9999999999999999986 5 899999997543210 001111 1122 2233445 455 8999999
Q ss_pred HHHHHHHHHHHc--CCCcEEEEeccccCCCCHHH--HHHHHHhcC-CCCeEEEEecCCCCCCchHHH
Q psy9579 779 IYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNED--FLKILKKFR-YFEKLIWAQDEPKNQGAWPQI 840 (887)
Q Consensus 779 ~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~--i~~~~~k~~-~~~~~v~~qEe~~n~G~~~~i 840 (887)
+....++|++++ ..++++||++++|.|||.++ +++++.++. + +|.| ||...+|++.+|
T Consensus 565 ~v~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~---~v~v-E~~~~~g~~~~v 627 (680)
T 1gpu_A 565 EVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVP---IMSV-EVLATTCWGKYA 627 (680)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSC---EEEE-CSSCSTTGGGTC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCc---eEEE-eCCccccHHHhc
Confidence 777777766543 23799999999999999987 889998886 5 4555 555557876654
No 16
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1.1e-42 Score=382.79 Aligned_cols=307 Identities=18% Similarity=0.237 Sum_probs=254.6
Q ss_pred cccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccch
Q psy9579 536 NVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSE 615 (887)
Q Consensus 536 ~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE 615 (887)
.++|..+...|+.+++.++++|++.|+|+++ ++++|.++.++.++||+.|++|++|||
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~----------------------~~g~~~~~~~~~~~~gp~r~~~~gIaE 60 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGK----------------------RGGVFLVTEGLLQKYGPDRVMDTPLSE 60 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCST----------------------TCCTTSTTTTHHHHHCTTTEEECCSCH
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccc----------------------cCCcchhhHHHHHHhCCCcEEECchhH
Confidence 4789999999999999999999999999987 344456677899999999999999999
Q ss_pred HHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhc------CccCcEEEecccCCCCCccccCchHH
Q psy9579 616 EAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWG------RISGLTLMLPHGYEGQGPEHSSARLE 689 (887)
Q Consensus 616 ~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~------~~sglv~~lP~G~~g~GpeHSs~r~E 689 (887)
.+.+|+++|+|+.|.+ |+||+||++|++ .++||++++. ++|+ ...++|+++|+|+.|.|+.|||+..+
T Consensus 61 ~~~v~~a~G~A~~G~~--p~~~~t~~~F~~---~a~dqi~~~~-a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~ 134 (324)
T 1umd_B 61 AAIVGAALGMAAHGLR--PVAEIQFADYIF---PGFDQLVSQV-AKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPE 134 (324)
T ss_dssp HHHHHHHHHHHHHTCE--EEEECSSGGGCG---GGHHHHHHTT-TTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCH
T ss_pred HHHHHHHHHHHHCCCE--EEEEeccHhHHH---HHHHHHHHHH-HHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHH
Confidence 9999999999999975 899999999985 4699999875 7876 45679999999998877777777899
Q ss_pred HHHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCc
Q psy9579 690 RFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKI 769 (887)
Q Consensus 690 r~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v 769 (887)
+||+.+ |||+|+.|+||.+++++|+.+++. ++|++|++||.|+|.+.. +++++.|..++++..+++++.++
T Consensus 135 a~~~~i--P~~~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~p~~l~~~~~~-----~~~~~~~~~~~Gk~~~~~~g~dv 205 (324)
T 1umd_B 135 AHFVHT--AGLKVVAVSTPYDAKGLLKAAIRD--EDPVVFLEPKRLYRSVKE-----EVPEEDYTLPIGKAALRREGKDL 205 (324)
T ss_dssp HHHHTS--TTCEEEECCSHHHHHHHHHHHHHC--SSCEEEEEEGGGSSSCCE-----ECCSSCCCCCTTCCEEEECCSSE
T ss_pred HHHhcC--CCCEEEEeCCHHHHHHHHHHHHhc--CCCEEEEechHhcCCCCC-----CcCCCCccccCCcceEEecCCCE
Confidence 999765 699999999999999999999974 499999999999987432 22333344456655555566655
Q ss_pred eEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHh
Q psy9579 770 KRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKY 847 (887)
Q Consensus 770 ~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~ 847 (887)
+|||||.+++.+++|++++ ..++++|||+++|+|||.++|.+++++|++ +|||+|.+.++|+|++|.+.+.+.
T Consensus 206 --~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~---vv~vEe~~~~gG~g~~v~~~l~~~ 280 (324)
T 1umd_B 206 --TLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGR---VVLVSDAPRHASFVSEVAATIAED 280 (324)
T ss_dssp --EEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHHHSC---EEEEEEEESTTCHHHHHHHHHHHH
T ss_pred --EEEEecHHHHHHHHHHHHHHhcCCCEEEEEeceecCCCHHHHHHHHhcCCe---EEEEecCCcCCCHHHHHHHHHHHh
Confidence 8999999988888877643 226999999999999999999999999987 799999999999999999999876
Q ss_pred hcc--CCcEEEecCCCCCCCCCCchhhHHHHHHHHHHHhh
Q psy9579 848 LNS--TQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885 (887)
Q Consensus 848 ~~~--~~~~~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a~ 885 (887)
... ..+++++|.++...|.. +.+.+....++|++.+.
T Consensus 281 ~~~~l~~~v~~vg~~d~~~~~~-l~~~~g~~~~~I~~~i~ 319 (324)
T 1umd_B 281 LLDMLLAPPIRVTGFDTPYPYA-QDKLYLPTVTRILNAAK 319 (324)
T ss_dssp HGGGCSSCCEEEEECSSCCCST-THHHHSCCHHHHHHHHH
T ss_pred CccccCCCeEEEeCCCCCCCHH-HHHHhCcCHHHHHHHHH
Confidence 321 35778888766555543 88888788888887653
No 17
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=3.7e-42 Score=384.80 Aligned_cols=307 Identities=19% Similarity=0.267 Sum_probs=220.0
Q ss_pred cccHHHHHHHHHhHHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccch
Q psy9579 536 NVDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSE 615 (887)
Q Consensus 536 ~idw~~aE~lA~~sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE 615 (887)
.++|..+...|+.+++.++++|+++|+|+++ ++++|.+++++.++||+.|++|++|||
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~----------------------~~g~~~~~~~~~~~~gp~r~~d~gIaE 107 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGK----------------------KGGVFLVTEGLYERFGPERVIDTPLNE 107 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC-------------------------------CTTTTHHHHHCTTTEEECCSCH
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCcccc----------------------cCCcchhHHHHHHHhCCCcEEECcccH
Confidence 4678888889999999999999999999987 456677888999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhh-HHHHhc----CccCcEEEecccCCCCCccccCchHHH
Q psy9579 616 EAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISS-SEEKWG----RISGLTLMLPHGYEGQGPEHSSARLER 690 (887)
Q Consensus 616 ~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~-~~~kw~----~~sglv~~lP~G~~g~GpeHSs~r~Er 690 (887)
.+++|+++|+|+.|.+ |+||+||+||+. .++||++++ +..||. ...++|+++|||+.++|+.|||++.++
T Consensus 108 ~~~v~~a~G~A~~G~r--pv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~~~a 182 (369)
T 1ik6_A 108 GGILGFAMGMAMAGLK--PVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEA 182 (369)
T ss_dssp HHHHHHHHHHHHTTCE--EEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC-----------HHH
T ss_pred HHHHHHHHHHHHCCCe--eEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccccccHHH
Confidence 9999999999999964 899999999995 459999986 456676 367899999998866677888888999
Q ss_pred HHhhhcCCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCce
Q psy9579 691 FLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIK 770 (887)
Q Consensus 691 ~lq~~~~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~ 770 (887)
|| ++.|||+|++||||++++++|+++++. ++||+|++||.|+|.+.. .+ ++..|...+++..+++++++|
T Consensus 183 ~l--~~iPnl~V~~Psd~~e~~~ll~~A~~~--~~Pv~i~~p~~l~r~~~~--~v---~~~~~~~~~G~~~v~~~g~dv- 252 (369)
T 1ik6_A 183 IF--VHTPGLVVVMPSTPYNAKGLLKAAIRG--DDPVVFLEPKILYRAPRE--EV---PEGDYVVEIGKARVAREGDDV- 252 (369)
T ss_dssp HH--HTCTTCEEECCCSHHHHHHHHHHHHHS--SSCEEEEEEGGGSSCCCE--EE---ECSSCCCCTTCCEEEECCSSE-
T ss_pred HH--cCCCCcEEEecCCHHHHHHHHHHHHhC--CCCEEEEEehhhhccCCC--Cc---CCCcccccCCceEEEEcCCCE-
Confidence 98 577899999999999999999999984 599999999999987421 11 111223334444444456665
Q ss_pred EEEEEechHHHHHHHHHHHcCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc
Q psy9579 771 RIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS 850 (887)
Q Consensus 771 r~i~~~G~~~~~l~~~~~~~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~ 850 (887)
+|||+|.+++.++++++++.. +++|||+++|+|||.++|.+++++|++ +|||+|....+|++++|...+.+....
T Consensus 253 -~Iia~G~~v~~a~~Aa~~L~G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~---vvvvEe~~~~GG~g~~v~~~l~~~~~~ 327 (369)
T 1ik6_A 253 -TLVTYGAVVHKALEAAERVKA-SVEVVDLQTLNPLDFDTVLKSVSKTGR---LIIAHDSPKTGGLGAEVRALVAEKALD 327 (369)
T ss_dssp -EEEECTTHHHHHHHHHHTSSS-CEEEEECCEEETTCHHHHHHHHHHHCC---EEEEEEEESTTSHHHHHHHHHHHHSGG
T ss_pred -EEEEeCHHHHHHHHHHHHhCC-CeEEEeeeecCCCCHHHHHHHHhccCe---EEEEecCCcCCcHHHHHHHHHHhhCcc
Confidence 899999999999988887643 999999999999999999999999997 799955555677778999999875221
Q ss_pred --CCcEEEec-CCCCCCCCCCchhhHHHHHHHHHHHhh
Q psy9579 851 --TQKLIYVG-RSCSASPASGYYSKHCKEQITLLNNAF 885 (887)
Q Consensus 851 --~~~~~~~g-r~~~~~~a~g~~~~h~~~~~~i~~~a~ 885 (887)
..+++.+| ++...+.+. +.+.+....++|++.+.
T Consensus 328 ~l~~pv~~vg~~d~~~~~~~-l~~~~gl~~~~I~~~i~ 364 (369)
T 1ik6_A 328 RLTAPVIRLAGPDVPQSPIA-ADAAYAPTVERIIKAIE 364 (369)
T ss_dssp GCSSCCEEEEECCCC-------------CHHHHHHHHH
T ss_pred ccCCCeEEEcCCCcCCCCHH-HHHHhCcCHHHHHHHHH
Confidence 24555555 455444444 88888888888887753
No 18
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-41 Score=401.61 Aligned_cols=490 Identities=12% Similarity=0.067 Sum_probs=320.3
Q ss_pred cCCCcccccccccchhHHHHHhhcc-----CCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRD-----DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI 336 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~-----~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~ 336 (887)
...+++|...|.|+|+|+|.++.+. .....+..++|++|||++ .+|.+||+||+|.. |++|-+|+||.||+|
T Consensus 115 ~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~-~eG~~~Eal~~A~~--~~L~~li~i~~nN~~ 191 (651)
T 2e6k_A 115 VTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDL-MEGVSGEAASLAGH--WGLSKLIVFWDDNRI 191 (651)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECCE
T ss_pred eccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhh-chhHHHHHHHHHHH--cCCCeEEEEEECCCc
Confidence 4457889999999999999987651 001136789999999999 99999999999999 999989999999999
Q ss_pred eeccCCCCcccCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCC--
Q psy9579 337 GFTTSPNDLRSTLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQ-- 413 (887)
Q Consensus 337 g~ST~~~~~rss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tq-- 413 (887)
+++++..... .....+++++||++++ .|||+|+++++.|.+.|.+ .++|+||++.|+|-+||++.|...+-.
T Consensus 192 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~~~~H~~~ 266 (651)
T 2e6k_A 192 SIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDSAKAHGEP 266 (651)
T ss_dssp ETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred cccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEecccccccccccccccC
Confidence 9999876654 5677889999999999 9999999999999998875 688999999999999999544322210
Q ss_pred -hHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHH---------HHHHHHHHHHHHHH----------HHhhcCCCCCCcc
Q psy9579 414 -PLMYKKIFKHPGIRELYSNKLKIQKILTKNESE---------NMIKEFNDMINSGK----------SIVNSIPSNFIYD 473 (887)
Q Consensus 414 -p~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~---------~i~~~~~~~l~~a~----------~~a~~~~~~~~~~ 473 (887)
+......++..+|+. +... .+.++..+ ..+.++++.+.+.. +...+...
T Consensus 267 ~~~~e~~~~~~~~~~~-~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----- 335 (651)
T 2e6k_A 267 LGPEAVEATRRNLGWP-YPPF-----VVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGEL----- 335 (651)
T ss_dssp CHHHHHHHHHHHHTCC-CCTT-----CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCC-----
T ss_pred CCHHHHHHHHHHcCCC-cccc-----cCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcC-----
Confidence 111011111122221 0000 11122111 11122222222111 11100000
Q ss_pred CccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhc
Q psy9579 474 KSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVIS 553 (887)
Q Consensus 474 ~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~ 553 (887)
.. |... +|. | -++ +..| -+..+ +...++..
T Consensus 336 --p~-~~~~---------------------------~~~-~--~~~----~~~r-----------~a~~~--~L~~~~~~ 365 (651)
T 2e6k_A 336 --PP-LPEE---------------------------PPS-F--DKP----IATR-----------AASGR--ALNLLAPR 365 (651)
T ss_dssp --CC-CCCS---------------------------CCC-C--CSC----BCHH-----------HHHHH--HHHHHGGG
T ss_pred --Cc-hhhh---------------------------ccc-c--Ccc----HHHH-----------HHHHH--HHHHHHhh
Confidence 00 2210 000 0 000 0001 11122 22346778
Q ss_pred CCcEEEecccCCC--CcccccceeeeccccccccccCCCcEEecCCCccc-cCCceEEeccccchHHHHHHHHhhccCC-
Q psy9579 554 GYGVRLSGQDSGR--GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSK-NQAKFHIINSILSEEAILGFEYGFSTAS- 629 (887)
Q Consensus 554 ~~~vrl~GeDv~r--GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~-~~g~~~V~nspLsE~ailG~~~G~a~~~- 629 (887)
+++|++.|+|++. ++| . ..+.++.+ +| +.|++|++|||.+++|++.|+|+.|
T Consensus 366 ~p~~~~~~aDl~~s~~~~-------------------~----~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg 421 (651)
T 2e6k_A 366 LPELLGGSADLTPSNNTK-------------------A----EGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGG 421 (651)
T ss_dssp CTTEEEEESSCHHHHTCS-------------------C----TTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCccccccccc-------------------c----ccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCC
Confidence 8999999999985 333 0 12456765 77 7899999999999999999999998
Q ss_pred CCCceEEe--eeccccccchhHHHHHHHhhHHHHhcCccCcEEEe-cccC--CCCCccccCchHHHHHhhhcCCCcEEEc
Q psy9579 630 PNTLTIWE--AQFGDFANGAQVIIDQFISSSEEKWGRISGLTLML-PHGY--EGQGPEHSSARLERFLQLCANNNIQIVQ 704 (887)
Q Consensus 630 ~~~l~i~E--~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~l-P~G~--~g~GpeHSs~r~Er~lq~~~~~nl~V~~ 704 (887)
.+ |+++ +||.||+..| +-+ .+-. ..++|+++ +.|. +.-||.| ++ +|-...+.+.|||+|+.
T Consensus 422 ~~--P~~~t~~~F~~~~~~a--ir~----~a~~----~lpvv~~~t~~g~g~G~dG~tH-q~-~edla~lr~iP~l~V~~ 487 (651)
T 2e6k_A 422 YR--AYGGTFLVFSDYMRPA--IRL----AALM----GVPTVFVFTHDSIALGEDGPTH-QP-VEHLMSLRAMPNLFVIR 487 (651)
T ss_dssp CE--EEEEEEGGGGGGSHHH--HHH----HHHH----TCCCEEEEECCSGGGCTTCTTT-CC-SSHHHHHHTSTTCEEEC
T ss_pred CE--EEEEeHHHHHHHHHHH--HHH----HHhc----CCCEEEEEECCccccCCCcCcc-cc-HHHHHHhcCCCCcEEEe
Confidence 54 8999 9999999765 111 1111 36788885 5553 3368999 44 89554556789999999
Q ss_pred CCCHhHHHHHHHHHHhC-CCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEechHHHHH
Q psy9579 705 PTSASQIFHLLRYQIIR-PIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDL 783 (887)
Q Consensus 705 pstpa~~~hlLr~q~~~-~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~~~~~l 783 (887)
|+++.+++++|+.+++. + .|++|++||..+..-. ....+.+..|.+ + ++++++-+.+||++|.+....
T Consensus 488 Pad~~E~~~~l~~A~~~~~--~Pv~i~~~r~~~~~~~-~~~~~~~~~G~~--v------l~~g~~~dv~iva~G~~v~~a 556 (651)
T 2e6k_A 488 PADAYETFYAWLVALRRKE--GPTALVLTRQAVPLLS-PEKARGLLRGGY--V------LEDVEEPQGVLVATGSEVHLA 556 (651)
T ss_dssp CSSHHHHHHHHHHHHHCCS--SCEEEECCSSCBCCCC-HHHHGGGGGSSE--E------EECCSSCSEEEEECTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCC--CCEEEEEeCCCCCCCC-cchhhhhcCCCE--E------EeeCCCCCEEEEEECHHHHHH
Confidence 99999999999999986 5 8999999987652210 000112222321 2 223422234899999987777
Q ss_pred HHHHHHc--CCCcEEEEeccccCCCCHHH--HHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEEecC
Q psy9579 784 FNFRKKK--NKNDVVIIRIEQLYPFPNED--FLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIYVGR 859 (887)
Q Consensus 784 ~~~~~~~--~~~~v~vi~l~~L~P~~~~~--i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~~gr 859 (887)
++|++++ ..+++.||++++|.|||.++ +++++.++.+. +|++ ||....|++.++ + +.+|-
T Consensus 557 l~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~--vv~v-E~~~~~G~~~~v------------~-~~ig~ 620 (651)
T 2e6k_A 557 LRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPGLP--VVAV-EAGASLGWERYA------------H-KVVAL 620 (651)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTSC--EEEE-CSSCCTTGGGTC------------S-EEECC
T ss_pred HHHHHHHHhcCCcEEEEecCcCCccccccHHHHHHHhCcCCe--EEEE-eCCccCchHHhC------------C-CEEEe
Confidence 7666532 23799999999999999997 88888877542 5666 554457876655 1 34554
Q ss_pred CCCCC--CCCCchhhHHHHHHHHHHHhh
Q psy9579 860 SCSAS--PASGYYSKHCKEQITLLNNAF 885 (887)
Q Consensus 860 ~~~~~--~a~g~~~~h~~~~~~i~~~a~ 885 (887)
+.... |..-+.+.+-...+.|++.+.
T Consensus 621 d~f~~sg~~~~l~~~~gl~~~~I~~~i~ 648 (651)
T 2e6k_A 621 DRFGASAPYPEVYERLGFTPERVAEAFL 648 (651)
T ss_dssp CSCCCSCCTTHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 43221 222345555666777777664
No 19
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.7e-40 Score=394.65 Aligned_cols=461 Identities=12% Similarity=0.031 Sum_probs=298.6
Q ss_pred CCcccccccccchhHHHHHhhc---cCC-----CCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC
Q psy9579 264 PSHLEIINPVVEGSAKARMERR---DDK-----FGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ 335 (887)
Q Consensus 264 pShle~v~Pva~G~A~A~q~~~---~~~-----~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq 335 (887)
..+||...|.|+|+|+|.++.. +.+ ...+..++|++|||++ .+|++||+||+|+. |++|-+|+||.||+
T Consensus 132 tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l-~eG~~~EAl~~A~~--~~L~nli~i~d~N~ 208 (700)
T 3rim_A 132 TGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDI-EEGVTSEASSLAAV--QQLGNLIVFYDRNQ 208 (700)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECS
T ss_pred ccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCccc-ccChHHHHHHHHHH--cCCCcEEEEEECCC
Confidence 4678889999999999999863 110 1246789999999999 99999999999999 99988999999999
Q ss_pred ceeccCCCCcccCCcccccccccCCcEEEE-cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCC-C--
Q psy9579 336 IGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPS-L-- 411 (887)
Q Consensus 336 ~g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~-~-- 411 (887)
|+|+++...+. ...+.+++++||++++.| ||+|+++++.|++.|.+ ..++|+||++.|+|-+||+...+.. +
T Consensus 209 ~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~~~~~Hg 284 (700)
T 3rim_A 209 ISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMDTGKAHG 284 (700)
T ss_dssp EETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSHHHHH
T ss_pred cccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCCCccccC
Confidence 99999887643 567888999999999999 99999999999988854 4689999999999999998644310 0
Q ss_pred --CChHhhHHH-----hhC-------CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHHHHHHHhhcCCCCCCccC
Q psy9579 412 --TQPLMYKKI-----FKH-------PGIRELYSNKLKIQKILTKNESENMIKEFND---MINSGKSIVNSIPSNFIYDK 474 (887)
Q Consensus 412 --tqp~~Yr~i-----~~~-------~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~---~l~~a~~~a~~~~~~~~~~~ 474 (887)
-.+..|+.. |.. .+++..|++. .++|-..++++++.-+++++ ++.+.++...+.+.+.
T Consensus 285 ~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~-~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~---- 359 (700)
T 3rim_A 285 AALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGL-VARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPD---- 359 (700)
T ss_dssp SCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCT----
T ss_pred CCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCc----
Confidence 001112211 000 0223333331 22221111111111111111 1111222222111111
Q ss_pred ccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcC
Q psy9579 475 SKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISG 554 (887)
Q Consensus 475 ~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~ 554 (887)
.|.... +.+ ... ...+.+--+=.-+...++.++
T Consensus 360 ---~~~~~~-p~~---------------------------~~~----------------~~~~atr~a~~~~L~~l~~~~ 392 (700)
T 3rim_A 360 ---GWDADL-PHW---------------------------EPG----------------SKALATRAASGAVLSALGPKL 392 (700)
T ss_dssp ---TTTSSC-CCC---------------------------CTT----------------SSCEEHHHHHHHHHHHHTTTC
T ss_pred ---chhhhc-ccc---------------------------ccc----------------ccchHHHHHHHHHHHHHHhhC
Confidence 122100 000 000 001111111111223567889
Q ss_pred CcEEEecccCCC--CcccccceeeeccccccccccCCCcEEecCCCccccC-----Cc----eEEeccccchHHHHHHHH
Q psy9579 555 YGVRLSGQDSGR--GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQ-----AK----FHIINSILSEEAILGFEY 623 (887)
Q Consensus 555 ~~vrl~GeDv~r--GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~-----g~----~~V~nspLsE~ailG~~~ 623 (887)
++|++.++|+.. ||| +..+..+.++| |+ .|++|++|+|.+++|++.
T Consensus 393 p~vv~~saDl~~s~~t~-----------------------~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~ 449 (700)
T 3rim_A 393 PELWGGSADLAGSNNTT-----------------------IKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILS 449 (700)
T ss_dssp TTEEEEESSCHHHHTCS-----------------------CTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHH
T ss_pred CCEEEEeCCccCCCCcc-----------------------cccchhhcccccccccCCcccCCceeecCccHHHHHHHHH
Confidence 999999999986 443 11234555665 34 599999999999999999
Q ss_pred hhccC-CCCCceEEe--eeccccccchhHHHHHHHhhHHHHhcCccCcEEEeccc-C--CCCCccccCchHHHHHhhhcC
Q psy9579 624 GFSTA-SPNTLTIWE--AQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHG-Y--EGQGPEHSSARLERFLQLCAN 697 (887)
Q Consensus 624 G~a~~-~~~~l~i~E--~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G-~--~g~GpeHSs~r~Er~lq~~~~ 697 (887)
|+|+. |.+ |+++ ++|.||... |+-..+-. ..+++++++|. . +..||.|.+.--+.+| .+.
T Consensus 450 GlA~~gG~~--Pv~~tF~~F~d~~~~------~ir~~al~----~lpvv~v~thdg~gvG~dG~THq~ied~a~l--r~i 515 (700)
T 3rim_A 450 GIVLHGPTR--AYGGTFLQFSDYMRP------AVRLAALM----DIDTIYVWTHDSIGLGEDGPTHQPIEHLSAL--RAI 515 (700)
T ss_dssp HHHHHSSCE--EEEEEEGGGGGGGHH------HHHHHHHH----TCCCEEEEECCSGGGCTTCTTTSCSSHHHHH--HTS
T ss_pred HHHHcCCCE--EEEEecHHHHHHHHH------HHHHhcCC----CCCEEEEEeCCCcccCCCCCccCChhHHHHH--hcC
Confidence 99999 765 7899 666666544 32112222 36899998863 2 3359999775555777 567
Q ss_pred CCcEEEcCCCHhHHHHHHHHHHhCCCC-CcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCC--------C
Q psy9579 698 NNIQIVQPTSASQIFHLLRYQIIRPIR-KPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPK--------K 768 (887)
Q Consensus 698 ~nl~V~~pstpa~~~hlLr~q~~~~~r-~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~--------~ 768 (887)
|||+|+.|++|.++.++|+.+++.+.. .|++|..|+.-+..-.. .+...++.|. .++ ++++ +
T Consensus 516 Pnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~~~~-~~~~~~~~G~--~vl------r~g~~~~~~~~~d 586 (700)
T 3rim_A 516 PRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDG-TDAEGVARGG--YVL------SDAGGLQPGEEPD 586 (700)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECCCTT-CCHHHHHHSC--EEE------ECCSCCCTTCCCS
T ss_pred CCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCCcCc-ccccccCCCc--EEE------ecCCccccCCCCC
Confidence 899999999999999999999987610 39999988764421000 0011122233 133 3443 5
Q ss_pred ceEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHH--HHHHHHHh--cCCCCeEEEEecCCCCCC
Q psy9579 769 IKRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNE--DFLKILKK--FRYFEKLIWAQDEPKNQG 835 (887)
Q Consensus 769 v~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~--~i~~~~~k--~~~~~~~v~~qEe~~n~G 835 (887)
| +||++|.++...++|++++ ..++++||+++++.|||.+ +++++|.+ +++ +|.|+|... .|
T Consensus 587 v--tiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~---~vtvEe~~~-~G 653 (700)
T 3rim_A 587 V--ILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSA---RVAVEAGVA-QC 653 (700)
T ss_dssp E--EEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCC---EEEECSSCS-GG
T ss_pred E--EEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceE---EEEEeCCCc-hh
Confidence 5 8999999777766665543 2379999999999999996 67888765 444 566665544 44
No 20
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2.6e-39 Score=386.70 Aligned_cols=470 Identities=15% Similarity=0.060 Sum_probs=303.4
Q ss_pred CCcccccccccchhHHHHHhhcc---C--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCcee
Q psy9579 264 PSHLEIINPVVEGSAKARMERRD---D--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGF 338 (887)
Q Consensus 264 pShle~v~Pva~G~A~A~q~~~~---~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ 338 (887)
..++|...|.|+|+|+|.++.+. . ....+..++|++|||++ .+|.+||+||+|+. |++|-+|+||.||+|++
T Consensus 115 tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~-~eG~~~Eal~~A~~--~~L~~li~i~d~N~~~i 191 (673)
T 1r9j_A 115 TGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCL-MEGVCQEALSLAGH--LALEKLIVIYDSNYISI 191 (673)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH-HSHHHHHHHHHHHH--HTCTTEEEEEEECSBCS
T ss_pred cCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchh-cccHHHHHHHHHHH--hCCCcEEEEEECCCCcc
Confidence 46788899999999999987641 0 01136789999999999 99999999999999 99998999999999999
Q ss_pred ccCCCCcccCCcccccccccCCcEE-EEcC-CCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHh
Q psy9579 339 TTSPNDLRSTLYCTDIGKIIEAPVF-HVNG-DDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLM 416 (887)
Q Consensus 339 ST~~~~~rss~~~sd~Ak~~giP~~-~VdG-~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~ 416 (887)
+++...+. ...+.+++++||++++ .||| +|+++++.|.+.|.+ ..++|+||++.|+|-+||+..|.+..-
T Consensus 192 ~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H---- 263 (673)
T 1r9j_A 192 DGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVH---- 263 (673)
T ss_dssp SSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGT----
T ss_pred ccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccc----
Confidence 99887665 5678899999999999 9999 999999999988865 368999999999999999966532110
Q ss_pred hHHHhhCCCHHHHHHHHHHHcCC-------CCHHHHHHHHH------HHHHHHHHHHHHhhcCCCCCCccCccccccccc
Q psy9579 417 YKKIFKHPGIRELYSNKLKIQKI-------LTKNESENMIK------EFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFL 483 (887)
Q Consensus 417 Yr~i~~~~dpi~~y~~~Li~~Gi-------~t~~e~~~i~~------~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~ 483 (887)
+ .+-+-+.+++...+.|+ +.++..+.++. ..+++.++.+...+...|. ....+....
T Consensus 264 ~-----~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~-----~~~~~~~~~ 333 (673)
T 1r9j_A 264 G-----APLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPA-----EGAAFVAQM 333 (673)
T ss_dssp S-----SCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHH
T ss_pred c-----CCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChh-----HHHHHHHHh
Confidence 0 00011112222222222 22222222111 0001111111111000000 000000000
Q ss_pred cCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEeccc
Q psy9579 484 KNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQD 563 (887)
Q Consensus 484 ~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeD 563 (887)
-..+|++|.... .. + +..+....|=..+...++.++++|++.|+|
T Consensus 334 -----------------------~~~~p~~~~~~~--p~-~---------~~~~a~r~a~~~~L~~l~~~~p~vv~~~aD 378 (673)
T 1r9j_A 334 -----------------------RGELPSGWEAKL--PT-N---------SSAIATRKASENCLAVLFPAIPALMGGSAD 378 (673)
T ss_dssp -----------------------TTCCCTTTGGGS--CC-C---------CSCEEHHHHHHHHHHHHHHHCTTEEEEESS
T ss_pred -----------------------cCCCCchhhhhc--cc-c---------ccchHHHHHHHHHHHHHHhhCCCEEEEecc
Confidence 001111110000 00 0 001111111122334567889999999999
Q ss_pred CCC--CcccccceeeeccccccccccCCCcEEecCCCccc-cCCceEEeccccchHHHHHHHHhhccCC-CCCceEEeee
Q psy9579 564 SGR--GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSK-NQAKFHIINSILSEEAILGFEYGFSTAS-PNTLTIWEAQ 639 (887)
Q Consensus 564 v~r--GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~-~~g~~~V~nspLsE~ailG~~~G~a~~~-~~~l~i~E~q 639 (887)
++. |+| +.+. -+..+.+ +| +.|++|++|+|.+++|++.|+|+.| .+ |+++.
T Consensus 379 l~~s~~~~-------------------~~~~--~~~~f~~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~~--P~~~~- 433 (673)
T 1r9j_A 379 LTPSNLTR-------------------PASA--NLVDFSSSSK-EGRYIRFGVREHAMCAILNGLDAHDGII--PFGGT- 433 (673)
T ss_dssp CHHHHTCS-------------------CGGG--CCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCE--EEEEE-
T ss_pred cccccccc-------------------ccCc--ccccccccCC-CCCeEecCccHHHHHHHHHHHHhcCCCE--EEEEe-
Confidence 986 443 1000 0124555 66 7899999999999999999999995 54 78998
Q ss_pred ccccccchhHHHHHHHhhHHHHhcCccCcEEEecc-c--CCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHH
Q psy9579 640 FGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-G--YEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLR 716 (887)
Q Consensus 640 FgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G--~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr 716 (887)
|..|+.- +.||+-..+-. ..++|+++.| | ++.-||.|.+ +|-.-.+.+.|||+|+.|+++.++.++|+
T Consensus 434 ~~~F~~~---~~~~ir~~a~~----~~pvv~~~t~~g~g~G~dG~tHq~--~edla~lr~iP~l~V~~Pad~~e~~~~l~ 504 (673)
T 1r9j_A 434 FLNFIGY---ALGAVRLAAIS----HHRVIYVATHDSIGVGEDGPTHQP--VELVAALRAMPNLQVIRPSDQTETSGAWA 504 (673)
T ss_dssp EGGGGGG---GHHHHHHHHHH----TCCCEEEEECCSGGGCTTCTTTCC--SSHHHHHHHSTTCEEECCSSHHHHHHHHH
T ss_pred hHHHHHH---HHHHHHHHHhc----CCCEEEEEECCccCcCCCCcccCC--HHHHHHHcCCCCCEEEeCCCHHHHHHHHH
Confidence 5555533 25665443322 3689999865 3 3346899944 77333335678999999999999999999
Q ss_pred HHHhC-CCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCC--CCceEEEEEechHHHHHHHHHHHcCC-
Q psy9579 717 YQIIR-PIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDP--KKIKRIIACSGKIYYDLFNFRKKKNK- 792 (887)
Q Consensus 717 ~q~~~-~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~--~~v~r~i~~~G~~~~~l~~~~~~~~~- 792 (887)
.++++ + +|++|..||.-+-.-. ....+.+..| +.+++++ .+| +|||+|.+....++|++.+..
T Consensus 505 ~a~~~~~--~Pv~i~~~r~~~~~~~-~~~~~~~~~G--------a~vl~~g~~~dv--~lia~G~~v~~al~Aa~~L~~~ 571 (673)
T 1r9j_A 505 VALSSIH--TPTVLCLSRQNTEPQS-GSSIEGVRHG--------AYSVVDVPDLQL--VIVASGSEVSLAVDAAKALSGE 571 (673)
T ss_dssp HHHHCTT--CCEEEECCSSEECCCT-TCCHHHHHTS--------CEEEECCTTCSE--EEEECGGGHHHHHHHHHHHTTT
T ss_pred HHHHhCC--CeEEEEEcCCCCCCCC-CcccccccCC--------CEEEeeCCCCCE--EEEEechhHHHHHHHHHHHHhc
Confidence 99986 5 8999999976442100 0000012222 2233344 455 899999987777777665421
Q ss_pred CcEEEEeccccCCCCHHH---HHHHHHhcCCCCeEEEEecCCCCCCchHHH
Q psy9579 793 NDVVIIRIEQLYPFPNED---FLKILKKFRYFEKLIWAQDEPKNQGAWPQI 840 (887)
Q Consensus 793 ~~v~vi~l~~L~P~~~~~---i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i 840 (887)
+++.||++++|.|||.++ +.++++++.+ +|.| ||...+|++.+|
T Consensus 572 i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~---vv~v-E~~~~~g~~~~v 618 (673)
T 1r9j_A 572 LRVRVVSMPCQELFDAQPDTYRQAVLPAGVP---VVSV-EAYVSFGWEKYS 618 (673)
T ss_dssp CCEEEEECSCHHHHHTSCHHHHHHHSCTTSC---EEEE-CSSCCTTGGGTC
T ss_pred CCEEEEeCCCCchhhcccHHHHHHHhccCCe---EEEE-eCCCccchHHhc
Confidence 799999999999999997 9999999876 5666 555457866655
No 21
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=5.1e-39 Score=384.49 Aligned_cols=504 Identities=12% Similarity=0.090 Sum_probs=315.9
Q ss_pred cCCCcccccccccchhHHHHHhhcc-----CCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRD-----DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI 336 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~-----~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~ 336 (887)
....++|...|.|+|+|+|.++.+. +....+..++|++|||++ .+|.+||+||+|+. |++|-+|+||.||+|
T Consensus 124 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~-~eG~~~Eal~~A~~--~~L~~li~i~~nN~~ 200 (675)
T 1itz_A 124 VTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQ-MEGIANEACSLAGH--WGLGKLIAFYDDNHI 200 (675)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECSE
T ss_pred ECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHh-chhHHHHHHHHHHH--hCCCcEEEEEECCCc
Confidence 3446789999999999999987651 001136789999999999 99999999999999 999669999999999
Q ss_pred eeccCCCCcccCCcccccccccCCcEE-EEcCC-CHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCCh
Q psy9579 337 GFTTSPNDLRSTLYCTDIGKIIEAPVF-HVNGD-DPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQP 414 (887)
Q Consensus 337 g~ST~~~~~rss~~~sd~Ak~~giP~~-~VdG~-D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp 414 (887)
+++++..... .....+++++||++++ .|||+ |+++++.|.+.|.+ ..++|+||++.|+|-+||+...++.
T Consensus 201 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~---- 272 (675)
T 1itz_A 201 SIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSY---- 272 (675)
T ss_dssp ETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSG----
T ss_pred cCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCcc----
Confidence 9999876644 5677889999999999 99999 99999999888765 3588999999999999998654431
Q ss_pred HhhHHHhhCCCHHHHHHHHHHHcCC------CCHHHHH----------HHHHHHHHHHHH----------HHHHhhcCCC
Q psy9579 415 LMYKKIFKHPGIRELYSNKLKIQKI------LTKNESE----------NMIKEFNDMINS----------GKSIVNSIPS 468 (887)
Q Consensus 415 ~~Yr~i~~~~dpi~~y~~~Li~~Gi------~t~~e~~----------~i~~~~~~~l~~----------a~~~a~~~~~ 468 (887)
.+. ..+-+-+.+++...+.++ +.++..+ ..+.++++.+.+ .++...+...
T Consensus 273 -~~H---~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (675)
T 1itz_A 273 -SVH---GSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGEL 348 (675)
T ss_dssp -GGT---SSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCC
T ss_pred -ccc---CCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccC
Confidence 110 000000111111111111 1111111 011111111111 1111111111
Q ss_pred CCCccCccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHh
Q psy9579 469 NFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYA 548 (887)
Q Consensus 469 ~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~ 548 (887)
+ ..|.... +.+. +.+..+....|=..+..
T Consensus 349 p-------~~~~~~~-~~~~-------------------------------------------~~~~~~a~r~a~~~~L~ 377 (675)
T 1itz_A 349 P-------TGWVDAL-PKYT-------------------------------------------PESPGDATRNLSQQCLN 377 (675)
T ss_dssp C-------TTGGGGS-CCCC-------------------------------------------TTSCCBCHHHHHHHHHH
T ss_pred C-------chhhhhh-hhhc-------------------------------------------cCCcchHHHHHHHHHHH
Confidence 1 1122110 0000 00001111111111223
Q ss_pred HHhhcCCcEEEecccCCCCcccccceeeeccccccccccCCCcEEecCCCccc-cCCceEEeccccchHHHHHHHHhhcc
Q psy9579 549 SLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSK-NQAKFHIINSILSEEAILGFEYGFST 627 (887)
Q Consensus 549 sll~~~~~vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~-~~g~~~V~nspLsE~ailG~~~G~a~ 627 (887)
.++..+++|++.|+|++..+.. + +. -+..+.+ +| +.|++|++|+|.+++|++.|+|+
T Consensus 378 ~i~~~~p~v~~~~aDl~~s~~~-------~----------~~----g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA~ 435 (675)
T 1itz_A 378 ALANVVPGLIGGSADLASSNMT-------L----------LK----MFGDFQKDTA-EERNVRFGVREHGMGAICNGIAL 435 (675)
T ss_dssp HHHHHCTTEEEEESSCHHHHTC-------C----------CT----TCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHHT
T ss_pred HHHHhCCCEEEEeccccccccc-------c----------cc----ccccccccCC-CCCeEeecccHHHHHHHHHHHHh
Confidence 4677889999999999862220 0 11 1234565 66 78999999999999999999999
Q ss_pred CCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEeccc-C--CCCCccccCchHHHHHhhhcCCCcEEEc
Q psy9579 628 ASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHG-Y--EGQGPEHSSARLERFLQLCANNNIQIVQ 704 (887)
Q Consensus 628 ~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G-~--~g~GpeHSs~r~Er~lq~~~~~nl~V~~ 704 (887)
.|....|+++. |.+|+.-+ .+|+-..+- ...++|++..|+ . +..||.|.+ +|-.-.+.+.|||+|+.
T Consensus 436 ~G~~~~P~~~t-~~~F~~~~---~~~ir~~a~----~~lpvv~~~t~~g~g~G~dG~tHq~--~edla~lr~iP~l~V~~ 505 (675)
T 1itz_A 436 HSPGFVPYCAT-FFVFTDYM---RGAMRISAL----SEAGVIYVMTHDSIGLGEDGPTHQP--IEHLVSFRAMPNILMLR 505 (675)
T ss_dssp TCTTCEEEEEE-EGGGHHHH---HHHHHHHHH----HTCCCEEEEECCSGGGCTTCTTTCC--SSHHHHHHSSSSCEEEC
T ss_pred cCCCCEEEEEE-HHHHHHHH---HHHHHHHHh----cCCCEEEEEECCccccCCCCCCcCc--HHHHHHhccCCCeEEEE
Confidence 99222489998 66665432 566543322 246899998663 2 337899943 78443446789999999
Q ss_pred CCCHhHHHHHHHHHHhC-CCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCC--CCceEEEEEechHHH
Q psy9579 705 PTSASQIFHLLRYQIIR-PIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDP--KKIKRIIACSGKIYY 781 (887)
Q Consensus 705 pstpa~~~hlLr~q~~~-~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~--~~v~r~i~~~G~~~~ 781 (887)
|+++.++.++|+.+++. + +|++|..||.-+-.-.. ...+.+..|. .++.+.. .+ .+| +||++|.+..
T Consensus 506 Pad~~e~~~~l~~a~~~~~--~Pv~i~~~r~~~p~~~~-~~~~~~~~Ga--~vl~~~~---~G~~~dv--~iva~G~~v~ 575 (675)
T 1itz_A 506 PADGNETAGAYKVAVLNRK--RPSILALSRQKLPHLPG-TSIEGVEKGG--YTISDNS---TGNKPDL--IVMGTGSELE 575 (675)
T ss_dssp CCSHHHHHHHHHHHHHCTT--SCEEEEECSSCBCCCTT-CCHHHHTTSS--EEEEECC---STTCCSE--EEEECGGGHH
T ss_pred CCCHHHHHHHHHHHHHhCC--CcEEEEecCCCCCCCCC-ccccccccCC--EEEeccc---CCCCCCE--EEEEECHHHH
Confidence 99999999999999986 5 89999998753311000 0001122232 1222110 04 455 8999999777
Q ss_pred HHHHHHHHc--CCCcEEEEeccccCCCCHHH--HHHHHHhcC-CCCeEEEEecCCCCCCchHHHHHHHHHhhccCCcEEE
Q psy9579 782 DLFNFRKKK--NKNDVVIIRIEQLYPFPNED--FLKILKKFR-YFEKLIWAQDEPKNQGAWPQIKENILKYLNSTQKLIY 856 (887)
Q Consensus 782 ~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~--i~~~~~k~~-~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~~~~~~~ 856 (887)
..++|++.+ ..++++||++++|.|||.++ +++++.++. +. +|.+ ||....|++.++ . .+.+.
T Consensus 576 ~al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~--vv~v-E~~~~~G~~~~~--------~--~~~~~ 642 (675)
T 1itz_A 576 IAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTA--RISI-EAGSTLGWQKYV--------G--AQGKA 642 (675)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCC--EEEE-CSSCCTTTHHHH--------C--SSCEE
T ss_pred HHHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCce--EEEE-ECCccccHHHhc--------C--CCceE
Confidence 777666532 23799999999999999987 888888874 32 5666 554457766543 1 23345
Q ss_pred ecCCCCCC--CCCCchhhHHHHHHHHHHHhhc
Q psy9579 857 VGRSCSAS--PASGYYSKHCKEQITLLNNAFL 886 (887)
Q Consensus 857 ~gr~~~~~--~a~g~~~~h~~~~~~i~~~a~~ 886 (887)
+|-+.-.. |..-+.+.+-...+.|++.+.+
T Consensus 643 ig~d~fg~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 643 IGIDKFGASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp ECCCSCCCSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred EEeCCCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 55544211 1122455555667777776643
No 22
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=3.2e-40 Score=394.63 Aligned_cols=471 Identities=13% Similarity=0.079 Sum_probs=305.5
Q ss_pred CCCcccccccccchhHHHHHhhcc-----CCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCce
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRD-----DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIG 337 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~-----~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g 337 (887)
.-.++|...|.|+|+|+|.++.+. .....+..++|++|||++ .+|.+||+||+|+. |++|-+|+||.||+|+
T Consensus 112 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~-~eG~~~Eal~~A~~--~~L~~li~i~~nN~~~ 188 (669)
T 2r8o_A 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCM-MEGISHEVCSLAGT--LKLGKLIAFYDDNGIS 188 (669)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECSEE
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHh-cchHHHHHHHHHHH--cCCCcEEEEEECCCcE
Confidence 346789999999999999987641 011126689999999999 99999999999999 9999999999999999
Q ss_pred eccCCCCcccCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCC-CCCCC----C
Q psy9579 338 FTTSPNDLRSTLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNE-QDTPS----L 411 (887)
Q Consensus 338 ~ST~~~~~rss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne-~DdP~----~ 411 (887)
++++...+. ...+.+++++||++++ .|||+|+++++.|++.|.+ ..++|+||++.|+|..||+. .|++. +
T Consensus 189 i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~ 264 (669)
T 2r8o_A 189 IDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAP 264 (669)
T ss_dssp TTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSC
T ss_pred ecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCCC
Confidence 999876543 4577889999999999 9999999999999998876 35889999999999999994 55431 1
Q ss_pred CChHhhHHHhhCCCHHHHHHHHHH---HcCCCCHHHHHHHH-----HHHHHHHHHHHHHhh-cCCCCCCccCcccccccc
Q psy9579 412 TQPLMYKKIFKHPGIRELYSNKLK---IQKILTKNESENMI-----KEFNDMINSGKSIVN-SIPSNFIYDKSKSEWAPF 482 (887)
Q Consensus 412 tqp~~Yr~i~~~~dpi~~y~~~Li---~~Gi~t~~e~~~i~-----~~~~~~l~~a~~~a~-~~~~~~~~~~~~~~w~~~ 482 (887)
..+..++. .++.|- +.-.+.++..+.++ +.......+.+...+ .+|.
T Consensus 265 ~~~ee~~~----------~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------- 320 (669)
T 2r8o_A 265 LGDAEIAL----------TREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQ-------------- 320 (669)
T ss_dssp CCHHHHHH----------HHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHH--------------
T ss_pred CCHHHHHH----------HHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChH--------------
Confidence 11111111 111110 00011111111111 000001111111100 0000
Q ss_pred ccCCCCCCCCCccCHHHHHHHHHHh-ccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEec
Q psy9579 483 LKNGYIDNCNTSISLEKLKFLSKKI-TNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSG 561 (887)
Q Consensus 483 ~~~~~~~~~~t~~~~~~l~~i~~~~-~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~G 561 (887)
.-..+.+.+ ..+|+.+. +.+.+. .. ...+.+..+....|=..+...++..+++|++.|
T Consensus 321 ----------------~~~~~~~~~~~~lp~~~~--~~~~~~-~~--~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~ 379 (669)
T 2r8o_A 321 ----------------EAAEFTRRMKGEMPSDFD--AKAKEF-IA--KLQANPAKIASRKASQNAIEAFGPLLPEFLGGS 379 (669)
T ss_dssp ----------------HHHHHHHHHHTCCCTTHH--HHHHHH-HH--HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEE
T ss_pred ----------------HHHHHHHHhcccCChhhh--hhhHHH-hh--hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEec
Confidence 000000000 13343321 111111 00 000111222222222223445788899999999
Q ss_pred ccCCC--CcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccC-CCCCceEEee
Q psy9579 562 QDSGR--GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTA-SPNTLTIWEA 638 (887)
Q Consensus 562 eDv~r--GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~-~~~~l~i~E~ 638 (887)
+|++. ||| +..+..+.++| +.|++|++|+|.+++|++.|+|+. |.+ |++ +
T Consensus 380 aDl~~s~~~~-----------------------~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~--P~~-~ 432 (669)
T 2r8o_A 380 ADLAPSNLTL-----------------------WSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFL--PYT-S 432 (669)
T ss_dssp SSCHHHHTCC-----------------------CTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCE--EEE-E
T ss_pred Cccccccccc-----------------------ccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCe--EEE-e
Confidence 99985 333 12244667777 789999999999999999999999 665 677 6
Q ss_pred eccccccchhHHHHHHHhhHHHHhcCccCcEEEecccC---CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHH
Q psy9579 639 QFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY---EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLL 715 (887)
Q Consensus 639 qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~---~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlL 715 (887)
+|.+|+.-+ .||+...+ ....++|++++|+. +.-||.|.+ +|-...+.+.|||+|+.|+++.++.++|
T Consensus 433 tf~~F~~~~---~~~ir~~a----~~~lpvv~~~t~~g~~~G~dG~tHq~--~edla~lr~iP~l~V~~Pad~~E~~~~l 503 (669)
T 2r8o_A 433 TFLMFVEYA---RNAVRMAA----LMKQRQVMVYTHDSIGLGEDGPTHQP--VEQVASLRVTPNMSTWRPCDQVESAVAW 503 (669)
T ss_dssp EEGGGGGTT---HHHHHHHH----HTTCCCEEEEECCSGGGCTTCTTTCC--SSHHHHHHTSTTCEEECCSSHHHHHHHH
T ss_pred ehHHHHHHH---HHHHHHHH----hcCCCEEEEEeCCCcCcCCCCCccCC--HHHHHHhcCCCCCEEEecCCHHHHHHHH
Confidence 888887644 67654432 13468999999743 236899944 7854445678999999999999999999
Q ss_pred HHHHhC-CCCCcEEEEccccccccCCCCC-ccccCCCCcceeeccccccccC--C-CCceEEEEEechHHHHHHHHHHH-
Q psy9579 716 RYQIIR-PIRKPLIIITPKSLLRKKEASS-TLMDLATGKFNKIINEIDDIID--P-KKIKRIIACSGKIYYDLFNFRKK- 789 (887)
Q Consensus 716 r~q~~~-~~r~Plv~~~pK~Llr~~~~~s-~~~d~~~g~f~~~i~~~~~~~~--~-~~v~r~i~~~G~~~~~l~~~~~~- 789 (887)
+.+++. + .|++|..||..+..-.... ..+.+..|. .++++ + .+| +||++|.+....++|+++
T Consensus 504 ~~a~~~~~--~Pv~i~~~r~~~~~~~~~~~~~~~~~~G~--------~vl~~~~g~~dv--~iva~G~~v~~al~Aa~~L 571 (669)
T 2r8o_A 504 KYGVERQD--GPTALILSRQNLAQQERTEEQLANIARGG--------YVLKDCAGQPEL--IFIATGSEVELAVAAYEKL 571 (669)
T ss_dssp HHHHHCSS--SCEEEECCSSEECCCCCCHHHHHHGGGSC--------EEEECCSSSCSE--EEEECGGGHHHHHHHHHHH
T ss_pred HHHHHhCC--CcEEEEeCCCCCCCCCCccchhhhccCCC--------EEEeccCCCCCE--EEEEECHHHHHHHHHHHHH
Confidence 999986 5 8999999988763211000 000122232 22233 4 555 899999977777776653
Q ss_pred --cCCCcEEEEeccccCCCCHHH--HHHHHHhcC-CCCeEEEEecCCCCCCch
Q psy9579 790 --KNKNDVVIIRIEQLYPFPNED--FLKILKKFR-YFEKLIWAQDEPKNQGAW 837 (887)
Q Consensus 790 --~~~~~v~vi~l~~L~P~~~~~--i~~~~~k~~-~~~~~v~~qEe~~n~G~~ 837 (887)
.| +++.||++++|.|||.++ +++++.++. + .+|.++|... .|++
T Consensus 572 ~~~G-i~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~--~vv~vE~~~~-~g~~ 620 (669)
T 2r8o_A 572 TAEG-VKARVVSMPSTDAFDKQDAAYRESVLPKAVT--ARVAVEAGIA-DYWY 620 (669)
T ss_dssp HHHT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTCC--CEEEEEEEEG-GGGH
T ss_pred HhcC-CCeEEEEeccCCccccchHHHHHHhccccCc--eEEEEeCCch-hhHH
Confidence 35 799999999999999886 667776663 3 2666655544 6644
No 23
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=6.3e-40 Score=360.81 Aligned_cols=296 Identities=18% Similarity=0.218 Sum_probs=235.7
Q ss_pred HHhHHhhcCCcEEEecccCCC--CcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHH
Q psy9579 546 AYASLVISGYGVRLSGQDSGR--GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEY 623 (887)
Q Consensus 546 A~~sll~~~~~vrl~GeDv~r--GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~ 623 (887)
+...++.++++|++.|+|+++ ||| ..+.++.++||+.|++|++|||.+++|+++
T Consensus 12 ~L~~l~~~~~~vv~~~~d~~~~~g~~------------------------~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~ 67 (324)
T 1w85_B 12 ALRIELKNDPNVLIFGEDVGVNGGVF------------------------RATEGLQAEFGEDRVFDTPLAESGIGGLAI 67 (324)
T ss_dssp HHHHHHHHCTTEEEEETTCSTTCCTT------------------------STTTTHHHHHCTTTEEECCSCHHHHHHHHH
T ss_pred HHHHHHhHCcCEEEEcCcccccCCcc------------------------hhHHHHHHHhCCCcEEEcchhHHHHHHHHH
Confidence 446788999999999999997 665 356688889999999999999999999999
Q ss_pred hhccCCCCCceEEeeeccccccchhHHHHHHHhhH-HHHhc----CccCcEEEecccCCCCCccccCchHHHHHhhhcCC
Q psy9579 624 GFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSS-EEKWG----RISGLTLMLPHGYEGQGPEHSSARLERFLQLCANN 698 (887)
Q Consensus 624 G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~-~~kw~----~~sglv~~lP~G~~g~GpeHSs~r~Er~lq~~~~~ 698 (887)
|+|+.|.+ |+||+||++|+. .++||++++. ..+|. ...++|+++|+|+.|.|+.|||+..++|| ++.|
T Consensus 68 G~A~~G~r--p~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~--~~iP 140 (324)
T 1w85_B 68 GLALQGFR--PVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLV--AQQP 140 (324)
T ss_dssp HHHHTTCE--EEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHH--TTST
T ss_pred HHHhCCCE--EEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHH--ccCC
Confidence 99999975 899999999984 5699998754 23466 56789999999998888877777899997 5678
Q ss_pred CcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCccccCCCCcceeeccccccccCCCCceEEEEEech
Q psy9579 699 NIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGK 778 (887)
Q Consensus 699 nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~~~v~r~i~~~G~ 778 (887)
||+|+.|+||.+++++|+.+++. ++|++|++||.|+|.+... +++..|...+++..++++++++ +|||||.
T Consensus 141 ~l~V~~Psd~~e~~~~l~~a~~~--~~Pv~i~~p~~l~r~~~~~-----~~~~~~~~~~Gk~~~~~~g~dv--~iva~G~ 211 (324)
T 1w85_B 141 GLKVVIPSTPYDAKGLLISAIRD--NDPVIFLEHLKLYRSFRQE-----VPEGEYTIPIGKADIKREGKDI--TIIAYGA 211 (324)
T ss_dssp TCEEECCSSHHHHHHHHHHHHHS--SSCEEEEEETTTSSSCCEE-----CCSSCCCCCTTCCEEEECCSSE--EEEECTT
T ss_pred CCEEEeeCCHHHHHHHHHHHHHc--CCCEEEEechHhcCCCCCC-----CCCccccccCCceEEEecCCCE--EEEEecH
Confidence 99999999999999999999974 4999999999999874321 1112233344444444456666 8999999
Q ss_pred HHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHHHhhcc--CCcE
Q psy9579 779 IYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYLNS--TQKL 854 (887)
Q Consensus 779 ~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~~~~~~--~~~~ 854 (887)
+++.++++++++ ..++++|||+++|+|||.++|.+++++|++ +|||+|...++|++++|...+.+.... ..++
T Consensus 212 ~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~---vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v 288 (324)
T 1w85_B 212 MVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGR---AIVVQEAQRQAGIAANVVAEINERAILSLEAPV 288 (324)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHHHHHHHHSC---EEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeeecCCCHHHHHHHHhhCCc---EEEEeCCCcCChHHHHHHHHHHhhCccccCCCe
Confidence 988888877643 226999999999999999999999999997 799977667899999999999876321 3567
Q ss_pred EEecCCCCCCCCCCchhhHHHHHHHHHHHh
Q psy9579 855 IYVGRSCSASPASGYYSKHCKEQITLLNNA 884 (887)
Q Consensus 855 ~~~gr~~~~~~a~g~~~~h~~~~~~i~~~a 884 (887)
+++|.++...|...+.+.+....++|++.+
T Consensus 289 ~~vg~~d~~~~~~~l~~~~gl~~~~I~~~i 318 (324)
T 1w85_B 289 LRVAAPDTVYPFAQAESVWLPNFKDVIETA 318 (324)
T ss_dssp EEEEECSSSSCCGGGHHHHSCCHHHHHHHH
T ss_pred EEEecCCcCCCcHHHHHHhCcCHHHHHHHH
Confidence 777775543333227777777777777665
No 24
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=8.3e-39 Score=382.72 Aligned_cols=476 Identities=13% Similarity=0.062 Sum_probs=294.7
Q ss_pred CCcccccccccchhHHHHHhhccC-----CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCcee
Q psy9579 264 PSHLEIINPVVEGSAKARMERRDD-----KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGF 338 (887)
Q Consensus 264 pShle~v~Pva~G~A~A~q~~~~~-----~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ 338 (887)
..++|...|.|+|+|+|.++.+.. ..-.+..++|++|||++ .+|.++|+||+|.. |++|-+|+||.||+|++
T Consensus 154 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l-~eG~~~Eal~~A~~--~~L~~livI~dnN~~~i 230 (711)
T 3uk1_A 154 TGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCL-MEGISHEACSLAGT--LKLNKLIALYDDNGISI 230 (711)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECSEET
T ss_pred ccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcch-hhccHHHHHHHHHH--hCCCcEEEEEECCCccc
Confidence 467888899999999999976520 01125689999999999 99999999999999 99999999999999999
Q ss_pred ccCCCCcccCCcccccccccCCcEEE-EcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCC-CCC-h-
Q psy9579 339 TTSPNDLRSTLYCTDIGKIIEAPVFH-VNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPS-LTQ-P- 414 (887)
Q Consensus 339 ST~~~~~rss~~~sd~Ak~~giP~~~-VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~-~tq-p- 414 (887)
+++...+. ...+.+++++||++++. |||+|++++..|.+.|. +.++|+||++.|+|-.||+...++. +-. |
T Consensus 231 ~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l 305 (711)
T 3uk1_A 231 DGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAK----RSDKPSLICCKTRIGNGAATKAGGHDVHGAPL 305 (711)
T ss_dssp TEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHT----TCSSCEEEEEEC--------------------
T ss_pred ccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEccccccCCCCCCCcccccCCCC
Confidence 98876653 46788899999999999 99999999998887764 4689999999999999997544431 110 0
Q ss_pred --HhhHHHh----hCCCHH----HHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCcccccccc
Q psy9579 415 --LMYKKIF----KHPGIR----ELYSNK--LKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPF 482 (887)
Q Consensus 415 --~~Yr~i~----~~~dpi----~~y~~~--Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~ 482 (887)
..++... ...+|. ..|..+ + ++|. ..+++.++.+.+ ++ +++|. ....|...
T Consensus 306 ~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~-------~~~~~w~~~~~~-~~--~~~p~------~a~~~~~~ 368 (711)
T 3uk1_A 306 GADEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGK-------RSEDDWNAAFAQ-YR--AKYPA------EAAEFERR 368 (711)
T ss_dssp CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHH-------HHHHHHHHHHHH-HH--HHCHH------HHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccc-------hhHHHHHHHHHH-HH--hhChh------hHHHHHHh
Confidence 1111100 011121 011000 0 1110 011111111110 00 00000 00000000
Q ss_pred ccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecc
Q psy9579 483 LKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQ 562 (887)
Q Consensus 483 ~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~Ge 562 (887)
. -..+|+++. ..+.+.+. ++.+.+..+.--.|=..+...++..+++|++.|+
T Consensus 369 ~-----------------------~~~~p~~~~--~~~~~~~~---~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~a 420 (711)
T 3uk1_A 369 M-----------------------AGTLPADWA--AKAAAIVA---GANERGETVATRKASQQTIEGLAAVLPELLGGSA 420 (711)
T ss_dssp H-----------------------HTCCCTTHH--HHHHHHHH---HHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEES
T ss_pred h-----------------------ccCCCchHH--HHhhHhhh---hhhccccchhHHHHHHHHHHHHHhhCCCEEEEec
Confidence 0 001122110 00000000 0001111121111111223456778999999999
Q ss_pred cCCC--CcccccceeeeccccccccccCCCcEEecCCCcccc---CC--ceEEeccccchHHHHHHHHhhccC-CCCCce
Q psy9579 563 DSGR--GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKN---QA--KFHIINSILSEEAILGFEYGFSTA-SPNTLT 634 (887)
Q Consensus 563 Dv~r--GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~---~g--~~~V~nspLsE~ailG~~~G~a~~-~~~~l~ 634 (887)
|++. +|| +..+..+.++ |+ ..|++|++|+|.+++|++.|+|+. |.+ |
T Consensus 421 Dl~~s~~~~-----------------------~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~--P 475 (711)
T 3uk1_A 421 DLTGSNLTN-----------------------WKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLHGGYK--P 475 (711)
T ss_dssp SCHHHHTCC-----------------------CTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHHHHHSSCE--E
T ss_pred cccCcCCcc-----------------------cccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHHHHcCCCE--E
Confidence 9985 333 1123456666 64 279999999999999999999995 875 7
Q ss_pred EEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEeccc---CCCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHH
Q psy9579 635 IWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHG---YEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQI 711 (887)
Q Consensus 635 i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G---~~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~ 711 (887)
+++. |.+|+.- ++||+-..+- ...+++++.+|+ ++..||.|++.--+.+| .+.|||+|+.|++|.++
T Consensus 476 v~~~-f~~F~~~---~~~~ir~~a~----~~lpv~~v~thdg~gvG~dG~THq~~ed~a~l--r~iPnl~V~~Pad~~E~ 545 (711)
T 3uk1_A 476 FGGT-FLTFSDY---SRNALRVAAL----MKVPSIFVFTHDSIGLGEDGPTHQSVEHVASL--RLIPNLDVWRPADTVET 545 (711)
T ss_dssp EEEE-EGGGHHH---HHHHHHHHHH----HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHH--HTSTTCEEECCSSHHHH
T ss_pred EEEE-hHHHHHH---HHHHHHHhhh----cCCCEEEEEECCCcCcCCCCCccCChhHHHHH--hcCCCCEEEecCCHHHH
Confidence 8896 9999854 4677643322 246899998773 34469999776555776 57789999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEEccccccccCCCCC-ccccCCCCcceeeccccccccCC----CCceEEEEEechHHHHHHHH
Q psy9579 712 FHLLRYQIIRPIRKPLIIITPKSLLRKKEASS-TLMDLATGKFNKIINEIDDIIDP----KKIKRIIACSGKIYYDLFNF 786 (887)
Q Consensus 712 ~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s-~~~d~~~g~f~~~i~~~~~~~~~----~~v~r~i~~~G~~~~~l~~~ 786 (887)
.++|+.+++.+ +|++|..|+.-+....... ....+..|.+ ++.+. ++ ++| +||++|.++...++|
T Consensus 546 ~~~l~~Ai~~~--~Pv~ir~~r~~~p~~~~~~~~~~~i~~G~~--vl~~~----~G~~~~~dv--tiia~G~~v~~al~A 615 (711)
T 3uk1_A 546 AVAWTYAVAHQ--HPSCLIFSRQNLAFNARTDAQLANVEKGGY--VLRDW----DEEIVARKI--ILIATGSEVELAMKA 615 (711)
T ss_dssp HHHHHHHHHSS--SCEEEECCSSEECCCCCCHHHHHHGGGSSE--EEECC----CSSCCSEEE--EEEECTTHHHHHHHH
T ss_pred HHHHHHHHhcC--CCEEEEeeCCCCCCCCCccccccccCCCeE--EEEec----CCCCCCCCE--EEEEecHHHHHHHHH
Confidence 99999999966 9999998865432110000 0012223332 22210 23 445 899999977777666
Q ss_pred HHHc--CCCcEEEEeccccCCCCHHH--HHHHHHhcCCCCeEEEEecCCCCCCchHHH
Q psy9579 787 RKKK--NKNDVVIIRIEQLYPFPNED--FLKILKKFRYFEKLIWAQDEPKNQGAWPQI 840 (887)
Q Consensus 787 ~~~~--~~~~v~vi~l~~L~P~~~~~--i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i 840 (887)
++++ ..++++||++++|.|||.++ ++++|.++.+ .+++.||....|++.++
T Consensus 616 a~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~---~~V~vE~~~~~g~~~~~ 670 (711)
T 3uk1_A 616 VEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGV---RRVAIEAGVTDFWRKYV 670 (711)
T ss_dssp HHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTS---CEEEECSSCSGGGHHHH
T ss_pred HHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCC---eEEEEeCCccccHHHHh
Confidence 5532 23699999999999999987 7899999986 36777787777754444
No 25
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=5e-38 Score=374.31 Aligned_cols=476 Identities=11% Similarity=0.065 Sum_probs=302.0
Q ss_pred CCCcccccccccchhHHHHHhhccC--C---CCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCce
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRDD--K---FGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIG 337 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~~--~---~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g 337 (887)
...++|...|.|+|+|+|.++.+.. + .-.+..++|++|||++ .+|.+||+||+|+. |++|-+|+||.||+|+
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l-~eG~~~Eal~~A~~--~~L~~livi~dnN~~~ 190 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCL-MEGVSHEACSLAGT--LGLNKLVAFWDDNNIS 190 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHH-HSHHHHHHHHHHHH--HTCTTEEEEEEECC--
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhh-hhchHHHHHHHHHH--hCCCeEEEEEECCCcc
Confidence 3467888899999999999976531 0 1115689999999999 99999999999999 9999899999999999
Q ss_pred eccCCCCcccCCcccccccccCCcEE-EEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCC--C-
Q psy9579 338 FTTSPNDLRSTLYCTDIGKIIEAPVF-HVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLT--Q- 413 (887)
Q Consensus 338 ~ST~~~~~rss~~~sd~Ak~~giP~~-~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~t--q- 413 (887)
++++..... ...+.+++++||++++ .|||+|++++..|.+.|.+ ..++|+||++.|+|-.||+...++.-. .
T Consensus 191 i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~ 266 (663)
T 3kom_A 191 IDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHS---QQQKPTLICCKTVIGFGSPEKAGTASVHGSP 266 (663)
T ss_dssp ---CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CSSSCEEEEEECCTTTTCTTTTTCSSTTSSC
T ss_pred cccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEEecccccccCCCCCCccccCCC
Confidence 999877643 4677889999999999 9999999999888776643 158999999999999999865443111 0
Q ss_pred --hHhhHHHh----hCCCHHHHHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhhcCCCCCCccCcccccccc
Q psy9579 414 --PLMYKKIF----KHPGIRELYSNKLKIQKILTKNESENMIK-----EFNDMINSGKSIVNSIPSNFIYDKSKSEWAPF 482 (887)
Q Consensus 414 --p~~Yr~i~----~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~-----~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~ 482 (887)
+..++... .+.+|.. +.++..+.+++ ...+..++.+...++. | . ...|...
T Consensus 267 l~~e~~~~~~~~l~~~~~pf~-----------~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~-p-~-----~~~~~~~ 328 (663)
T 3kom_A 267 LSDQERASAAKELNWDYQAFE-----------IPQDVYKYWDAREKGQALEANWQGQRNLFKDS-P-K-----FDEFERV 328 (663)
T ss_dssp CCHHHHHHHHHHTTCCCCTTC-----------CCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTS-T-T-----HHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcc-----------CChhHHHHHHHHhhcchhhHHHHHHHHHhhcc-h-H-----HHHHHHH
Confidence 11111100 0112211 11111111110 1111112222211111 1 1 0011100
Q ss_pred ccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecc
Q psy9579 483 LKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQ 562 (887)
Q Consensus 483 ~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~Ge 562 (887)
. -..+|++++ ..+.+.+. ++.+.+..+.---|=..|...++..+++|++.|+
T Consensus 329 ~-----------------------~~~~p~~~~--~~~~~~~~---~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~a 380 (663)
T 3kom_A 329 L-----------------------SKELPVGLE--SAINDYIA---SQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSA 380 (663)
T ss_dssp H-----------------------HTCCCTTHH--HHHHHHHH---HHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEEC
T ss_pred h-----------------------ccCCCcchh--hhhhhhhh---hhhccCcchhHHHHHHHHHHHHHhhCCCEEEEec
Confidence 0 012333221 00101010 1111112222111222233457788999999999
Q ss_pred cCCCCcccccceeeeccccccccccCCCcEEecCCCcc-ccCCceEEeccccchHHHHHHHHhhccC-CCCCceEEeeec
Q psy9579 563 DSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVS-KNQAKFHIINSILSEEAILGFEYGFSTA-SPNTLTIWEAQF 640 (887)
Q Consensus 563 Dv~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~-~~~g~~~V~nspLsE~ailG~~~G~a~~-~~~~l~i~E~qF 640 (887)
|++.- ++..|..+.++. ++| +.|++|++|+|.+++|++.|+|+. |.+ |+++. |
T Consensus 381 Dl~~s---------------------~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~--P~~~t-f 435 (663)
T 3kom_A 381 DLTGS---------------------NNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIK--PYGGT-F 435 (663)
T ss_dssp CC--C---------------------CSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCE--EEEEE-E
T ss_pred ccCCC---------------------CCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCE--EEEEe-h
Confidence 99851 122234455775 677 689999999999999999999999 775 79998 9
Q ss_pred cccccchhHHHHHHHhhHHHHhcCccCcEEEecc-cC--CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHH
Q psy9579 641 GDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GY--EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRY 717 (887)
Q Consensus 641 gDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~--~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~ 717 (887)
.+|+.-+ .||+-..+ ....++|+++.| |. +..||.|++.--+.+| .+.|||+|+.|++|.++.++|+.
T Consensus 436 ~~F~~~~---~~~ir~~a----~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~l--r~iPnl~V~~Pad~~e~~~~l~~ 506 (663)
T 3kom_A 436 LVFSDYS---RNAIRMSA----LMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSL--RLIPNLSVWRPADTIETMIAWKE 506 (663)
T ss_dssp GGGHHHH---HHHHHHHH----HTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHH--HTSTTCEEECCCSHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHH----hcCCCEEEEEeCCccccCCCCCCcCCHHHHHHH--hcCCCcEEEeeCCHHHHHHHHHH
Confidence 9998544 67753322 234689998755 33 3469999876566777 56789999999999999999999
Q ss_pred HHh-CCCCCcEEEEccccccccCCCCC-ccccCCCCcceeeccccccccC--CCCceEEEEEechHHHHHHHHHHHc--C
Q psy9579 718 QII-RPIRKPLIIITPKSLLRKKEASS-TLMDLATGKFNKIINEIDDIID--PKKIKRIIACSGKIYYDLFNFRKKK--N 791 (887)
Q Consensus 718 q~~-~~~r~Plv~~~pK~Llr~~~~~s-~~~d~~~g~f~~~i~~~~~~~~--~~~v~r~i~~~G~~~~~l~~~~~~~--~ 791 (887)
+++ .+ +|++|..|+.-+-...... ....+..|. .++++ +.|| +||++|.++...++|++++ .
T Consensus 507 A~~~~~--~Pv~ir~~r~~~p~~~~~~~~~~~~~~G~--------~vl~~~~g~dv--tiia~G~~v~~al~Aa~~L~~~ 574 (663)
T 3kom_A 507 AVKSKD--TPSVMVLTRQNLMPVVQTQHQVANIARGG--------YLVKDNPDAKL--TIVATGSEVELAVKVANEFEKK 574 (663)
T ss_dssp HHHCSS--CCEEEECCSSEECCCCCCHHHHHHHTTTC--------EEEECCTTCSC--EEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHhCC--CCEEEEccCccCCCcCccccchhcccCce--------EEEEecCCCCE--EEEEecHHHHHHHHHHHHHHhc
Confidence 998 45 9999998764221100000 001122232 12223 5677 8999999777776665532 2
Q ss_pred CCcEEEEeccccCCCCHHH--HHHHHHhcCCCCeEEEEecCCCCCCchHHH
Q psy9579 792 KNDVVIIRIEQLYPFPNED--FLKILKKFRYFEKLIWAQDEPKNQGAWPQI 840 (887)
Q Consensus 792 ~~~v~vi~l~~L~P~~~~~--i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i 840 (887)
.++++||++++|.|||.++ +.++|.++.. .+++.|+...+|...++
T Consensus 575 Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~---~~v~vE~~~~~g~~~~~ 622 (663)
T 3kom_A 575 GIKLNVASIPCVEVFATQAHEYKKTVIKDDI---PAVFVEMAQPDMWYKYM 622 (663)
T ss_dssp TCCCEEEECSCHHHHHTSCHHHHHHHSCTTS---CEEEECSSCCGGGGGGC
T ss_pred CCCeEEEEcCcCCcccccHHHHHHHhcCCCC---eEEEEecCCcccHHHHh
Confidence 3799999999999999988 7888888765 36677777777755443
No 26
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=6.8e-38 Score=374.08 Aligned_cols=461 Identities=15% Similarity=0.133 Sum_probs=304.7
Q ss_pred CCCcccccccccchhHHHHHhhccC-----CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCce
Q psy9579 263 NPSHLEIINPVVEGSAKARMERRDD-----KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIG 337 (887)
Q Consensus 263 npShle~v~Pva~G~A~A~q~~~~~-----~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g 337 (887)
...++|...|.|+|+|+|.++.+.. ....+..++|++|||++ .+|.++|+||+|.. |++|-+|+|+.||+|+
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l-~eG~~~Eal~~A~~--~~L~~livI~dnN~~~ 214 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDL-MEGVSAEASSLAAH--LQLGRLVVLYDSNDIS 214 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECSBC
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhh-hhccHHHHHHHHHH--hCCCeEEEEEECCCee
Confidence 4468888999999999999876520 01125679999999999 99999999999999 9998899999999999
Q ss_pred eccCCCCcccCCcccccccccCCcEEEE-cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCC----
Q psy9579 338 FTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLT---- 412 (887)
Q Consensus 338 ~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~t---- 412 (887)
++++.... ....+.+++++||++++.| ||+|++++..|.+.|.+ ..++|+||++.|+|-.||+...++.-.
T Consensus 215 i~~~~~~~-~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~ 290 (690)
T 3m49_A 215 LDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSASHGSP 290 (690)
T ss_dssp SSSBGGGT-CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSC
T ss_pred cccchhhc-cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCcccCcccccCCC
Confidence 99987654 3467788999999999999 99999999887655532 268999999999999999754443110
Q ss_pred -ChHhhHHH-----hhCC-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHHHHHHHhhcCCCCCCccCcc
Q psy9579 413 -QPLMYKKI-----FKHP-------GIRELYSNKLKIQKILTKNESENMIKEFND---MINSGKSIVNSIPSNFIYDKSK 476 (887)
Q Consensus 413 -qp~~Yr~i-----~~~~-------dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~---~l~~a~~~a~~~~~~~~~~~~~ 476 (887)
.+..++.. |... ++...|++.+.++|--.+.++.++-.++.. ++.+.++...+.+.+.
T Consensus 291 ~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp~------ 364 (690)
T 3m49_A 291 LGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPE------ 364 (690)
T ss_dssp CCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCT------
T ss_pred CCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCch------
Confidence 01112211 1111 011222221222221112222222222222 1222222222211111
Q ss_pred ccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCc
Q psy9579 477 SEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYG 556 (887)
Q Consensus 477 ~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~ 556 (887)
.|..- +| .+. .+.++..--|-.-+...++.++++
T Consensus 365 -~~~~~---------------------------~~-~~~-----------------~~~~~a~R~a~g~~L~~~~~~~p~ 398 (690)
T 3m49_A 365 -GWEQN---------------------------LP-TYE-----------------LGSKAATRNSSGAVINAIAESVPS 398 (690)
T ss_dssp -TGGGG---------------------------CC-CCC-----------------TTCEEEHHHHHHHHHHHHHHHCTT
T ss_pred -hhhhh---------------------------cc-ccc-----------------cccchHHHHHHHHHHHHHHhhCCC
Confidence 12110 00 000 000011101111122346778999
Q ss_pred EEEecccCCC--CcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccC-CCCCc
Q psy9579 557 VRLSGQDSGR--GTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTA-SPNTL 633 (887)
Q Consensus 557 vrl~GeDv~r--GtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~-~~~~l 633 (887)
|++.|+|++. ||| +..+.++.+++++.|++|++|+|.+++|++.|+|+. |.+
T Consensus 399 vv~~~aDl~~s~~~~-----------------------~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~-- 453 (690)
T 3m49_A 399 FFGGSADLAGSNKTY-----------------------MNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLK-- 453 (690)
T ss_dssp EEEEESSCHHHHTCC-----------------------CTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCE--
T ss_pred EEEEeCcccccCCcc-----------------------ccccccchhhcCCCceEEcCchHHHHHHHHHHHHHcCCCE--
Confidence 9999999985 332 234568888899999999999999999999999999 776
Q ss_pred eEEe--eeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccC---CCCCccccCchHHHHHhhhcCCCcEEEcCCCH
Q psy9579 634 TIWE--AQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGY---EGQGPEHSSARLERFLQLCANNNIQIVQPTSA 708 (887)
Q Consensus 634 ~i~E--~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~---~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstp 708 (887)
|+++ ++|.||...| | +. .+- ...+++++++|+. +..||.|++.--+.+| .+.|||+|+.|++|
T Consensus 454 P~~~tf~~Fs~f~~~a---i-r~--~al----~~lpVv~v~~~~gigvG~dG~THq~ied~a~l--r~iPnl~V~~Pad~ 521 (690)
T 3m49_A 454 TYGGTFFVFSDYLRPA---I-RL--AAL----MQLPVTYVFTHDSIAVGEDGPTHEPIEQLAAL--RAMPNVSVIRPADG 521 (690)
T ss_dssp EEEEEEGGGGGGGHHH---H-HH--HHH----HTCCCEEEEECCSGGGCTTCGGGCCSSHHHHH--HTSTTCEEECCSSH
T ss_pred EEEEecHHHHHHHHHH---H-HH--HHh----cCCCcEEEEECCCcCCCCCCCccCCHHHHHHH--hcCCCCEEEeeCCH
Confidence 7999 8999998765 2 11 122 2478999999853 3369999886666777 56789999999999
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEccccccccCCCCCc---cccCCCCcceeeccccccccCCC----CceEEEEEechHHH
Q psy9579 709 SQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASST---LMDLATGKFNKIINEIDDIIDPK----KIKRIIACSGKIYY 781 (887)
Q Consensus 709 a~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s~---~~d~~~g~f~~~i~~~~~~~~~~----~v~r~i~~~G~~~~ 781 (887)
.++.++|+.++..+ .+|++|..|+.-+..-.. .. ..++..|.+ + +++++ +| +||++|.++.
T Consensus 522 ~E~~~~l~~Ai~~~-~~Pv~ir~~R~~~p~~~~-~~~~~~~~~~~G~~--v------lr~g~~g~~dv--tiia~G~~v~ 589 (690)
T 3m49_A 522 NESVAAWRLALEST-NKPTALVLTRQDLPTLEG-AKDDTYEKVAKGAY--V------VSASKKETADV--ILLATGSEVS 589 (690)
T ss_dssp HHHHHHHHHHHHCS-SSCEEEECCSSEEECCHH-HHTTHHHHHHTSCE--E------EECCSSSSCSE--EEEECTTHHH
T ss_pred HHHHHHHHHHHHcC-CCCEEEEeecccCCCCCc-cccccccccCCCeE--E------EEecCCCCCCE--EEEEechHHH
Confidence 99999999999872 289999988754321000 00 011222321 2 23443 55 8999999777
Q ss_pred HHHHHHHHc--CCCcEEEEeccccCCCCH--HHHHHHHH--hcCCCCeEEEEecCCCCCC
Q psy9579 782 DLFNFRKKK--NKNDVVIIRIEQLYPFPN--EDFLKILK--KFRYFEKLIWAQDEPKNQG 835 (887)
Q Consensus 782 ~l~~~~~~~--~~~~v~vi~l~~L~P~~~--~~i~~~~~--k~~~~~~~v~~qEe~~n~G 835 (887)
..++|++++ ..++++||+++++.|||. ++++++|. ++++ +++-||....|
T Consensus 590 ~Al~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~----~v~vEe~~~~G 645 (690)
T 3m49_A 590 LAVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTK----RFAIEMGATFG 645 (690)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCC----EEEECSSCCTT
T ss_pred HHHHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCe----EEEEECCchhh
Confidence 776665532 237999999999999997 78888886 3554 44555555666
No 27
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=7e-38 Score=371.03 Aligned_cols=454 Identities=12% Similarity=0.039 Sum_probs=295.9
Q ss_pred cCCCcccccccccchhHHHHHhhccC--CCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceec
Q psy9579 262 FNPSHLEIINPVVEGSAKARMERRDD--KFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFT 339 (887)
Q Consensus 262 ~npShle~v~Pva~G~A~A~q~~~~~--~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~S 339 (887)
....|+|...|.|+|+|+|.++.+.. ....+..++|++|||++ .+|.++|+||+|+. |++|-+|+|+.||+|+++
T Consensus 111 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~-~eG~~~Eal~~A~~--~~L~~livi~nnN~~~i~ 187 (632)
T 3l84_A 111 IATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDL-QEGISYEACSLAGL--HKLDNFILIYDSNNISIE 187 (632)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHH-HSHHHHHHHHHHHH--TTCTTEEEEEEECSEETT
T ss_pred cCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcch-hhccHHHHHHHHHH--cCCCcEEEEEECCCcccc
Confidence 34478888999999999999976420 01125679999999999 99999999999999 999889999999999999
Q ss_pred cCCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCCCCCChHhhHH
Q psy9579 340 TSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKK 419 (887)
Q Consensus 340 T~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP~~tqp~~Yr~ 419 (887)
++..... ...+.+++++||++++.|||+|++++..|.+.|. +.++|+||++.|+|-.||+...++. .+
T Consensus 188 ~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~-----~~-- 255 (632)
T 3l84_A 188 GDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAK----KSTKPCLIIAKTTIAKGAGELEGSH-----KS-- 255 (632)
T ss_dssp EEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHH----TCSSCEEEEEECCTTTTCGGGTTCG-----GG--
T ss_pred cchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHH----hCCCCEEEEEeeEeeecCCCCCCcc-----cc--
Confidence 8876543 4577889999999999999999999988877664 4789999999999999998644321 11
Q ss_pred HhhCCCH--HHHHHHHHHHcCC-------CCHHHHHHHH------HHHHHHHHHHHHHhhcCCCCCCccCcccccccccc
Q psy9579 420 IFKHPGI--RELYSNKLKIQKI-------LTKNESENMI------KEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLK 484 (887)
Q Consensus 420 i~~~~dp--i~~y~~~Li~~Gi-------~t~~e~~~i~------~~~~~~l~~a~~~a~~~~~~~~~~~~~~~w~~~~~ 484 (887)
|..| -+.+++.+.+-|. +.++..+.++ ++..+..++.+.. +.+|... ...+...|.....
T Consensus 256 ---Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~-~~~p~~~-~~~~p~~~~~~~~ 330 (632)
T 3l84_A 256 ---HGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEK-SAKKELL-ERLLNPDFNKIAY 330 (632)
T ss_dssp ---SSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHH-SSCHHHH-HHHHSCCSTTCCC
T ss_pred ---cCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhc-ccCchhh-hhhCccchhhhcc
Confidence 1111 1111111111121 2222222221 1111222222222 1111000 0000011211100
Q ss_pred CCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcCCcEEEecccC
Q psy9579 485 NGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGYGVRLSGQDS 564 (887)
Q Consensus 485 ~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~~~vrl~GeDv 564 (887)
.+.. ...+ ..|.. .+- +...+....+++++.+.|+
T Consensus 331 -~~~~--~~~~-----------------------------a~r~a-------~~~------~l~~l~~~~p~~v~~~aDl 365 (632)
T 3l84_A 331 -PDFK--GKDL-----------------------------ATRDS-------NGE------ILNVLAKNLEGFLGGSADL 365 (632)
T ss_dssp -CCCT--TCCB-----------------------------CHHHH-------HHH------HHHHHHHHCTTEEEEESSC
T ss_pred -hhcc--ccch-----------------------------HHHHH-------HHH------HHHHHHhhCCCEEEEeccc
Confidence 0000 0000 01100 111 1123456689999999998
Q ss_pred CCCcccccceeeeccccccccccCCCcEEecCCCccccCCceEEeccccchHHHHHHHHhhccC-CCCCceEEeeecccc
Q psy9579 565 GRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTA-SPNTLTIWEAQFGDF 643 (887)
Q Consensus 565 ~rGtFshRHav~~dq~~~~~~~~~~~~~~~pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~-~~~~l~i~E~qFgDF 643 (887)
+.-+. +. . ...++||+.|++|++|+|.+++|++.|+|+. |.+ |+++. |.+|
T Consensus 366 ~~s~~-------------------~~-----~-~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~--P~~~~-f~~F 417 (632)
T 3l84_A 366 GPSNK-------------------TE-----L-HSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFL--PFSAT-FFIF 417 (632)
T ss_dssp HHHHT-------------------CC-----C-TTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCE--EEEEE-EGGG
T ss_pred CCccC-------------------cc-----h-hcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCE--EEEEe-cHHH
Confidence 74110 10 0 1235677899999999999999999999999 775 79998 9999
Q ss_pred ccchhHHHHHHHhhHHHHhcCccCcEEEecc-cC--CCCCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh
Q psy9579 644 ANGAQVIIDQFISSSEEKWGRISGLTLMLPH-GY--EGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII 720 (887)
Q Consensus 644 ~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~-G~--~g~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~ 720 (887)
+.- ++||+-..+- ...++|+++.| |. +..||.|++.--+.+| .+.|||+|+.|++|.++.++|+.++.
T Consensus 418 ~~~---~~~~ir~~a~----~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~l--r~iP~l~V~~P~d~~e~~~~l~~A~~ 488 (632)
T 3l84_A 418 SEY---LKPAARIAAL----MKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTF--RAMPNFLTFRPADGVENVKAWQIALN 488 (632)
T ss_dssp HHH---HHHHHHHHHH----HTCCCEEEEECCSGGGCTTCGGGSCSSHHHHH--HHSSSCEEECCSSHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHhc----cCCCEEEEEECCCcCCCCCCCCCCCHhHHHHH--hcCCCCEEEecCCHHHHHHHHHHHHh
Confidence 854 4788643322 24689998765 33 3469999887667777 46679999999999999999999998
Q ss_pred CCCCCcEEEEccccccccCCCCCccccCCCCcceeecccc-ccccC--CCCceEEEEEechHHHHHHHHHHHc--CCCcE
Q psy9579 721 RPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEI-DDIID--PKKIKRIIACSGKIYYDLFNFRKKK--NKNDV 795 (887)
Q Consensus 721 ~~~r~Plv~~~pK~Llr~~~~~s~~~d~~~g~f~~~i~~~-~~~~~--~~~v~r~i~~~G~~~~~l~~~~~~~--~~~~v 795 (887)
.+ +|++|..|+.-+ -+.. + .+...++.. .++++ +++| +||++|.++...++|++++ ..+++
T Consensus 489 ~~--~Pv~ir~~r~~~-~~~~----~-----~~~~~~~~g~~vl~~~~g~dv--tiia~G~~v~~al~Aa~~L~~~Gi~~ 554 (632)
T 3l84_A 489 AD--IPSAFVLSRQKL-KALN----E-----PVFGDVKNGAYLLKESKEAKF--TLLASGSEVWLCLESANELEKQGFAC 554 (632)
T ss_dssp CS--SCEEEECCSSCB-CCCC----C-----CSBCCGGGSSEEEECCTTCSE--EEEECGGGHHHHHHHHHHHHHTTCCE
T ss_pred CC--CCEEEEEcCCCC-CCCc----c-----ccccccccccEEEEecCCCCE--EEEEechHHHHHHHHHHHHHhcCCCe
Confidence 65 999999887543 1110 0 001122222 23334 5666 8999999777776665532 23799
Q ss_pred EEEeccccCCCCHHH--HHHHHHhcCCCCeEEEEecCCCCCCc
Q psy9579 796 VIIRIEQLYPFPNED--FLKILKKFRYFEKLIWAQDEPKNQGA 836 (887)
Q Consensus 796 ~vi~l~~L~P~~~~~--i~~~~~k~~~~~~~v~~qEe~~n~G~ 836 (887)
+||++++|.|||.++ ++++|.+ ++ +|.| ||....|.
T Consensus 555 ~Vi~~~~i~PlD~~~~~~~~sv~~-~~---vv~v-E~~~~~g~ 592 (632)
T 3l84_A 555 NVVSMPCFELFEKQDKAYQERLLK-GE---VIGV-EAAHSNEL 592 (632)
T ss_dssp EEEECSBHHHHHTSCHHHHHHHCC-SE---EEEE-CSSCCGGG
T ss_pred EEEecCcCCCcchhHHHHHHHhcC-CC---EEEE-eCChhhhH
Confidence 999999999999976 8899988 33 5555 45444453
No 28
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=5.9e-31 Score=320.84 Aligned_cols=547 Identities=13% Similarity=0.060 Sum_probs=312.7
Q ss_pred ccCCchhHHHHHHHHHHHhh--cCC------CCcEEecCCccc---hHHHHHHHhCCCHHHHHHHccCCCCCCCCCCCcc
Q psy9579 172 SLEGSESFILSLNEIIQHSG--KRG------IREIVIGMAHRG---RLNVLVNILGKKPKELFDEFEDKNSENLLSGDVK 240 (887)
Q Consensus 172 g~eG~Ea~~vgl~~~i~~a~--al~------~~D~v~gm~HRg---r~~~L~n~~G~~~~~if~e~~G~~~~~~~~GDvk 240 (887)
++-||=+...++-+|..... .++ ..|+|+.--|-+ .++.+ ..|.-..+-|..|..-..+ +
T Consensus 102 ~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~--l~Gr~~~e~l~~fRq~~~~----~--- 172 (886)
T 2qtc_A 102 ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAF--LEGRLTQEQLDNFRQEVHG----N--- 172 (886)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHH--HTTSSCHHHHTTBTCCTTS----S---
T ss_pred CCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHH--HhCCCCHHHHHhccCCCCC----C---
Confidence 34566555555555544321 133 568999866666 33344 5675333444555432111 0
Q ss_pred cccccccccCCCCceeEEEeecCCCcccccccccchhHHHHHhhcc--CCCCCceEEEEeecCcccccccHHHHHHHHhc
Q psy9579 241 YHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRD--DKFGTQVLPVLVHGDAAFSGQGVVMETLNFSK 318 (887)
Q Consensus 241 yHlG~s~~~~~~gg~~hl~l~~npShle~v~Pva~G~A~A~q~~~~--~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~ 318 (887)
-|-|+.......++ + .+...|++...+.|+|.|+|.++..+ -..+.+..++|++|||++ .+|.+||+||+|+
T Consensus 173 gl~~~p~~~~~p~~-~----~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l-~eG~~~EAl~~A~ 246 (886)
T 2qtc_A 173 GLSSYPHPKLMPEF-W----QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEM-DEPESKGAITIAT 246 (886)
T ss_dssp CBCSSCCTTTSTTT-C----CCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGG-GSHHHHTTHHHHH
T ss_pred CCCCCCCcccCCCc-c----cccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccc-cccchHHHHHHHH
Confidence 11112110001111 1 13346788889999999999997211 012237789999999999 9999999999999
Q ss_pred cCCCCCCCEEEEEEeCCceeccCCCCc-ccCCcccccccccCCcEEEE--------------------------------
Q psy9579 319 IDSYNTGGTIHIIINNQIGFTTSPNDL-RSTLYCTDIGKIIEAPVFHV-------------------------------- 365 (887)
Q Consensus 319 l~~~~lpGvIfiv~NNq~g~ST~~~~~-rss~~~sd~Ak~~giP~~~V-------------------------------- 365 (887)
. ++++-+|+||.||++.++++.... ....++.++.+++|++++.|
T Consensus 247 ~--~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~ 324 (886)
T 2qtc_A 247 R--EKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQT 324 (886)
T ss_dssp H--TTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHH
T ss_pred H--cCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhh
Confidence 9 999879999999999999987753 23467888999999999999
Q ss_pred -------------------------------------cCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCC--C
Q psy9579 366 -------------------------------------NGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNE--Q 406 (887)
Q Consensus 366 -------------------------------------dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne--~ 406 (887)
||+|+++|+.|.+.|.+. .++|+||++.|++-+||.. .
T Consensus 325 ~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~~~e 401 (886)
T 2qtc_A 325 FKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGDAAK 401 (886)
T ss_dssp HTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTCC-
T ss_pred hhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccchhhc
Confidence 799999999999999874 3589999999999999973 3
Q ss_pred CCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCC-CHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCCCccCccc
Q psy9579 407 DTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKIL-TKNESEN--------MIKEFNDMINSGKSIVNSIPSNFIYDKSKS 477 (887)
Q Consensus 407 DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~-t~~e~~~--------i~~~~~~~l~~a~~~a~~~~~~~~~~~~~~ 477 (887)
+...+-+ ..|. ..+=+..++++ .|+. +++++++ ...+++...+...+..... |.. . .
T Consensus 402 ~~~~~H~-~~~l----~~~~~~~~r~~---~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r~~~l~g~~-p~~-~----~ 467 (886)
T 2qtc_A 402 GKNIAHQ-VKKM----NMDGVRHIRDR---FNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYL-PSR-Q----P 467 (886)
T ss_dssp -----------------CHHHHHHHHH---TTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHHHHTTSCS-SCC-C----C
T ss_pred CCccccC-CCCC----CHHHHHHHHHH---cCCCCChhhhccccccCCccchHHHHHHHHHHHHhcccC-cch-h----h
Confidence 3221100 0011 11222222222 2322 1111100 0000110000000000000 000 0 0
Q ss_pred cccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcccHHHHHHHHHhHHhhcC---
Q psy9579 478 EWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISG--- 554 (887)
Q Consensus 478 ~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~idw~~aE~lA~~sll~~~--- 554 (887)
.+.. . ..+|+ + +.....+ ...+..+.|..+=.-+...|+.++
T Consensus 468 ~~~~----~---------------------~~~p~-~---~~~~~~~------~~~~~~~atr~afg~~L~~l~~~~~~~ 512 (886)
T 2qtc_A 468 NFTE----K---------------------LELPS-L---QDFGALL------EEQSKEISTTIAFVRALNVMLKNKSIK 512 (886)
T ss_dssp SCCS----C---------------------CCCCC-G---GGGHHHH------SCCSSCBCHHHHHHHHHHHHTTCTTTT
T ss_pred hhhh----c---------------------ccCCc-h---hhhhhhc------cCCCCcchHHHHHHHHHHHHHhhcccC
Confidence 0000 0 01111 0 0000000 011123433222222234556655
Q ss_pred CcEEEecccCCC--Cc---ccccceeeeccccccccccCCCcEEecCC-Cc---cccCCceEEeccccchHH-HH---HH
Q psy9579 555 YGVRLSGQDSGR--GT---FSHRHAILYNQDYQYSEKETDISTYIPLH-NV---SKNQAKFHIINSILSEEA-IL---GF 621 (887)
Q Consensus 555 ~~vrl~GeDv~r--Gt---FshRHav~~dq~~~~~~~~~~~~~~~pl~-~l---~~~~g~~~V~nspLsE~a-il---G~ 621 (887)
.+|+...-|+.+ |+ | -+.+.+ ..++..|.|-. +. ..+..+.|++|++|+|.+ +. |+
T Consensus 513 ~~iV~i~pd~~~~~G~~dl~--------~S~~i~---~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~ 581 (886)
T 2qtc_A 513 DRLVPIIADEARTFGMEGLF--------RQIGIY---SPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAA 581 (886)
T ss_dssp TTEEEEESSCSGGGTCHHHH--------HHHCBB---CC-----------------CBTTCCBEECCSCHHHHHHHHHHH
T ss_pred CcEEEEcCccccccCccccc--------cccccc---ccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHH
Confidence 889988888765 32 1 000000 00233444311 11 112346799999999999 67 89
Q ss_pred HHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecc----cCCCCCccccCchHHHHHhhhcC
Q psy9579 622 EYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPH----GYEGQGPEHSSARLERFLQLCAN 697 (887)
Q Consensus 622 ~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~----G~~g~GpeHSs~r~Er~lq~~~~ 697 (887)
+.|||+.|...+|++ +.|..|. -|-++||+++.+. ++..-+++.-+ +..+-||.|++-.-+.+ +.+.
T Consensus 582 a~GlA~~G~~~~P~~-~~ys~F~--~qRa~Dqi~~~~d----~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~--lr~i 652 (886)
T 2qtc_A 582 ATSYSTNNLPMIPFY-IYYSMFG--FQRIGDLCWAAGD----QQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQ--SLTI 652 (886)
T ss_dssp HTHHHHTSCCCEEEE-EEEGGGS--HHHHHHHHHHHHH----TTCCCEEEEESCSTTTSTTTCTTTCCSCHHHH--HTTS
T ss_pred HHHHHhcCCCceEEE-EEehHHH--HHHHHHHHHHHHH----HhcCCEEEEEecCcccCCCCCCccCCcchHHH--HhhC
Confidence 999999993223563 5566775 3567999987742 23333333322 34667999987434444 4788
Q ss_pred CCcEEEcCCCHhHHHHHHHHHHhCCCCCc----EEEEccccc--cccCCCCCccccCCCCcceeeccccccccCC--CCc
Q psy9579 698 NNIQIVQPTSASQIFHLLRYQIIRPIRKP----LIIITPKSL--LRKKEASSTLMDLATGKFNKIINEIDDIIDP--KKI 769 (887)
Q Consensus 698 ~nl~V~~pstpa~~~hlLr~q~~~~~r~P----lv~~~pK~L--lr~~~~~s~~~d~~~g~f~~~i~~~~~~~~~--~~v 769 (887)
|||+|+.|+++.++.++|+.+++++ ..| +++..++.. |.++. ++++....+++.+.+++++ .+-
T Consensus 653 Pnl~V~~Pada~E~~~~l~~al~~~-~gP~~e~v~i~~~r~~~~~~~p~-------~~~~~~~~~~gga~vlr~g~~~~~ 724 (886)
T 2qtc_A 653 PNCISYDPAYAYEVAVIMHDGLERM-YGEKQENVYYYITTLNENYHMPA-------MPEGAEEGIRKGIYKLETIEGSKG 724 (886)
T ss_dssp TTEEEECCSSHHHHHHHHHHHHHHH-HSTTCCCCEEEEECCSCCBCCCC-------CCTTCHHHHHHTCEEEEEECCSSE
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhc-CCCCCceEEEEEeCCccccCCCC-------CCcchhhhccCceEEEEecCCCCC
Confidence 8999999999999999999999863 158 888877643 32221 1111111124444444443 122
Q ss_pred eEEEEEechHHHHHHHHHHHc----CCCcEEEEeccccCCCCHHHHHHHHHhc
Q psy9579 770 KRIIACSGKIYYDLFNFRKKK----NKNDVVIIRIEQLYPFPNEDFLKILKKF 818 (887)
Q Consensus 770 ~r~i~~~G~~~~~l~~~~~~~----~~~~v~vi~l~~L~P~~~~~i~~~~~k~ 818 (887)
+.+|+|||.+....++|++.+ | ++++||+++++.|||.++|. ++||
T Consensus 725 dVtLia~G~~v~~al~AAe~L~~e~G-I~a~Vvd~~sl~pLD~e~i~--~~kt 774 (886)
T 2qtc_A 725 KVQLLGSGSILRHVREAAEILAKDYG-VGSDVYSVTSFTELARDGQD--CERW 774 (886)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHC-EEEEEEECSCHHHHHHHHHH--HHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhC-CceEEEECCcCcccchHHHH--Hhhh
Confidence 448999999877777776543 5 69999999999999999988 7776
No 29
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.67 E-value=1.8e-17 Score=186.88 Aligned_cols=233 Identities=12% Similarity=0.125 Sum_probs=84.3
Q ss_pred eEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEecccCC-C----CC
Q psy9579 606 FHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLMLPHGYE-G----QG 680 (887)
Q Consensus 606 ~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~lP~G~~-g----~G 680 (887)
.+++.+. ||.+.+|.++|+|+.|.| ++|+.++.+|.+ ++||+.+.+ ....|+|++++.+.. + ..
T Consensus 65 ~~~i~~e-~E~~a~~~a~Gaa~aG~r--~~~~ts~~G~~~----~~d~l~~aa----~~~~P~Vi~~~~~~~~~~g~~~~ 133 (395)
T 1yd7_A 65 GVVIQME-DEIASIAAAIGASWAGAK--AMTATSGPGFSL----MQENIGYAV----MTETPVVIVDVQRSGPSTGQPTL 133 (395)
T ss_dssp CEEEECS-CHHHHHHHHHHHHHTTCC--EEEEEETTHHHH----HTTTCC--------CCCCEEEEEEC-----------
T ss_pred cEEEEeC-CHHHHHHHHHHHHHhCCc--EEEEeCchHHHH----HHHHHHHHH----hcCCCEEEEEeeCCCCCCCCCcc
Confidence 5777777 999999999999999987 799999999987 379976543 446799999997542 2 33
Q ss_pred ccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCCCC--CccccCC-------
Q psy9579 681 PEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKEAS--STLMDLA------- 749 (887)
Q Consensus 681 peHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~~~--s~~~d~~------- 749 (887)
++||+ +++.++....+.|+.|+.|+||++++++++.++. ..++.||+|++|+.|+.....+ .+.+++.
T Consensus 134 ~~~sd-~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~ 212 (395)
T 1yd7_A 134 PAQGD-IMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLP 212 (395)
T ss_dssp ----------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC--
T ss_pred cchhH-HHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhccccc
Confidence 55665 4676554444669999999999999999999983 1235999999999876443211 0000000
Q ss_pred ---CC---ccee--ec--------c---------------------cc-------------------------ccccCCC
Q psy9579 750 ---TG---KFNK--II--------N---------------------EI-------------------------DDIIDPK 767 (887)
Q Consensus 750 ---~g---~f~~--~i--------~---------------------~~-------------------------~~~~~~~ 767 (887)
++ .|.. +. + ++ ....+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~ 292 (395)
T 1yd7_A 213 RNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDA 292 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCC
Confidence 00 0110 00 0 00 0011223
Q ss_pred CceEEEEEechHHHHHHHHHHHcC--CCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHHH
Q psy9579 768 KIKRIIACSGKIYYDLFNFRKKKN--KNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENIL 845 (887)
Q Consensus 768 ~v~r~i~~~G~~~~~l~~~~~~~~--~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i~ 845 (887)
+ .+|||||.++..++++.+++. .+++.||++++++|||.+.|.++++++.+ |++++|.. +|++..|+..+.
T Consensus 293 d--v~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i~~~~~~~~~---vvvvEe~~--G~l~~~v~~~~~ 365 (395)
T 1yd7_A 293 E--IGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIERIAERVDK---LYVPEMNL--GQLYHLIKEGAN 365 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--EEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHHHHHHhcCCE---EEEEeCCc--hHHHHHHHHHhc
Confidence 3 489999999888887766542 26899999999999999999999999987 57777654 677777776665
Q ss_pred HhhccCCcEEEecCCC
Q psy9579 846 KYLNSTQKLIYVGRSC 861 (887)
Q Consensus 846 ~~~~~~~~~~~~gr~~ 861 (887)
. ..++.++|+..
T Consensus 366 ~----~~~~~~~gk~~ 377 (395)
T 1yd7_A 366 G----KAEVKLISKIG 377 (395)
T ss_dssp ----------------
T ss_pred C----CCCeEEEeccC
Confidence 4 12345666644
No 30
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.63 E-value=1.6e-15 Score=182.90 Aligned_cols=523 Identities=13% Similarity=0.098 Sum_probs=287.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccH---HHHHHHHhccCCCCCCCEEEEEEeCCceeccC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGV---VMETLNFSKIDSYNTGGTIHIIINNQIGFTTS 341 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~---v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~ 341 (887)
-.||--.++|+|+|+. + .+..++|+.|||.. .+|. +||+.++++- ++++-+|-|+.+|++.|+.+
T Consensus 175 G~LGqGls~AvG~A~~----~-----~~~~v~~~~GDGe~-e~GsLAg~wea~~~~~~--~~l~nl~~i~D~N~~~i~g~ 242 (845)
T 3ahc_A 175 GELGYALSHAYGAVMN----N-----PSLFVPCIIGDGEA-ETGPLATGWQSNKLVNP--RTDGIVLPILHLNGYKIANP 242 (845)
T ss_dssp SSTTCHHHHHHHHHTT----C-----TTCEEEEEEETTGG-GSHHHHHHGGGGGSCCT--TTSCEEEEEEEECSBSSSSB
T ss_pred CCccchHhHHhhhhhc----C-----CCCeEEEEECCCch-hhhcchhhhHHhhhhhh--hcCCCEEEEEECCCCcCCCC
Confidence 3567777889998842 2 25689999999998 9999 9999999999 99999999999999999998
Q ss_pred CCCcc-cCCcccccccccCCcEE-EEcC-C--CHHHHHHHHHHHHHH-----------HHc--cCCc--EEEEEEeeecC
Q psy9579 342 PNDLR-STLYCTDIGKIIEAPVF-HVNG-D--DPESVILVTKIAVEY-----------RMK--FKKD--CIINIICFRKL 401 (887)
Q Consensus 342 ~~~~r-ss~~~sd~Ak~~giP~~-~VdG-~--D~~AV~~a~~~A~e~-----------~r~--~~~P--vlIe~vtYR~~ 401 (887)
+..++ +...+.++-++||.-++ .||| + |++++..++..|++. +++ ..+| .+|-+.|..-+
T Consensus 243 t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 243 TILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp CHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred ccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 86543 34678889999999998 9999 8 999999998776643 333 3689 99999998777
Q ss_pred -------CCCCCCCCCCCChHhhHHHhhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccC
Q psy9579 402 -------GHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDK 474 (887)
Q Consensus 402 -------GHne~DdP~~tqp~~Yr~i~~~~dpi~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a~~~a~~~~~~~~~~~ 474 (887)
|....+. ...|.-|+..-. -..+.+++++.-.+. ++-.+-...+. .
T Consensus 323 tgp~~~~G~~~eg~-----------~~~H~~pl~~~~--------~~~~~~~~l~~wl~~-----~~p~elF~~~~-~-- 375 (845)
T 3ahc_A 323 TCPKFIDGKKTEGS-----------WRAHQVPLASAR--------DTEEHFEVLKGWMES-----YKPEELFNADG-S-- 375 (845)
T ss_dssp TSCSEETTEECTTS-----------GGGSSCSCTTTT--------TCHHHHHHHHHHHHH-----TCGGGTBCTTS-C--
T ss_pred CCCCCCCCcccCCC-----------ccccCCCCCCcc--------cCHHHHHHHhhhccC-----CCchhccCCch-H--
Confidence 6532221 122322221100 001111111110000 00000000000 0
Q ss_pred ccccccccccCCCCCCCCCccCHHHHHHHHHHhccCCCCCcchhHHHHHHHHHHhhhcCCCcc-cHHHHHHHHHhHHhhc
Q psy9579 475 SKSEWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNV-DWGMAEHLAYASLVIS 553 (887)
Q Consensus 475 ~~~~w~~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~P~~f~~h~~v~~~~~~R~~m~~~~~~i-dw~~aE~lA~~sll~~ 553 (887)
....|.... +.... .....+...-..+...+ .+|+ |.-.. +.+ +.. .+-...... .-++.+ +...|...
T Consensus 376 ~~~~~~~~~-~~g~~-r~~~~P~~~~g~l~~~~-~lp~-~~~~~-~~~-~~~--~~~g~~~~~atra~g~--~L~~l~~~ 445 (845)
T 3ahc_A 376 IKDDVTAFM-PKGEL-RIGANPNANGGVIREDL-KLPE-LDQYE-VTG-VKE--YGHGWGQVEAPRALGA--YCRDIIKN 445 (845)
T ss_dssp BCHHHHTTS-CCGGG-STTTCGGGGGGGTCCCC-CCCC-GGGGC-CTH-HHH--HCTTEEEECTHHHHHH--HHHHHHHH
T ss_pred HHHHHHHhC-cchHh-HhhhCHHhcCCcCcccc-CCCC-hHhhh-ccc-ccc--ccCCccchhHHHHHHH--HHHHHHHh
Confidence 001111110 00000 00000000000000000 1221 11000 000 000 000000000 122222 23456778
Q ss_pred CCc-EEEecccCCCCcccccceeeeccccccccccCCCcEEe--cCCCccccCCceEEeccccchHHHHHHHHhhccCCC
Q psy9579 554 GYG-VRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYI--PLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASP 630 (887)
Q Consensus 554 ~~~-vrl~GeDv~rGtFshRHav~~dq~~~~~~~~~~~~~~~--pl~~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~ 630 (887)
+++ +++.+=|...-+. -..+.+.. .+.|.+ .|. |-. -...+ ..|+++ -|+|.+..|.+-||++.|.
T Consensus 446 ~p~~~vv~sADl~~Sn~---t~~f~~~t----~~~~~~-~~~~~P~d-~~~~~-~GR~i~-GI~Eh~M~gia~Glal~G~ 514 (845)
T 3ahc_A 446 NPDSFRIFGPDETASNR---LNATYEVT----DKQWDN-GYLSGLVD-EHMAV-TGQVTE-QLSEHQCEGFLEAYLLTGR 514 (845)
T ss_dssp STTTEEEEESSCTTTTT---CGGGGGTC----CEECCS-CCCCTTTC-CSEES-SCSEEE-CSCHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEecCCCcccc---HHHHHhhc----cccccc-ccccCCcc-cccCC-CCcEee-eecHHHHHHHHHHHHhcCC
Confidence 888 9999999864211 00000000 000111 112 211 01112 269999 9999999999999999996
Q ss_pred CCceEEe--eeccccccchhHHHHH----HHhh-HHHHhcCcc-CcEEEecccC---CCCCccccCchHHHHHhhh---c
Q psy9579 631 NTLTIWE--AQFGDFANGAQVIIDQ----FISS-SEEKWGRIS-GLTLMLPHGY---EGQGPEHSSARLERFLQLC---A 696 (887)
Q Consensus 631 ~~l~i~E--~qFgDF~~~Aq~~~Dq----~i~~-~~~kw~~~s-glv~~lP~G~---~g~GpeHSs~r~Er~lq~~---~ 696 (887)
. +++= +-|..|+.-| ++| +-.+ ++.-|++.. ++.+++-|.. +--||.|-.--+|..+... .
T Consensus 515 ~--~f~~t~atFl~~~~~a---~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~ 589 (845)
T 3ahc_A 515 H--GIWSSYESFVHVIDSM---LNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNN 589 (845)
T ss_dssp E--EEEEEEHHHHGGGHHH---HHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTT
T ss_pred C--CceecchhhhchhhhH---HHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccC
Confidence 4 3443 4555555553 888 3333 456677755 5777777743 3348999875456666555 6
Q ss_pred CCCcEEEcCCCHhHHHHHHHHHHhCCCCCcEEEEccccccccCCCCC-ccccCCCCcceeeccccccccC--CCCceEEE
Q psy9579 697 NNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKSLLRKKEASS-TLMDLATGKFNKIINEIDDIID--PKKIKRII 773 (887)
Q Consensus 697 ~~nl~V~~pstpa~~~hlLr~q~~~~~r~Plv~~~pK~Llr~~~~~s-~~~d~~~g~f~~~i~~~~~~~~--~~~v~r~i 773 (887)
.|||.|+.|+.+.....+++.++... ..|.+++..|.=+-.-.... ..+.+..|.+ ++.-+. ++ +.+-+.||
T Consensus 590 iPn~~V~~PaDanet~~a~~~al~~~-~~~~v~v~sRq~~p~~~~~~~a~~~~~~G~~--v~~~as--~d~~g~~~DVvL 664 (845)
T 3ahc_A 590 DHVTNIYFATDANMLLAISEKCFKST-NKINAIFAGKQPAPTWVTLDEARAELEAGAA--EWKWAS--NAENNDEVQVVL 664 (845)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCB-SCEEEEECCCSCEEECSCHHHHHHHHHHSEE--ECTTTC--CCSSTTTCSEEE
T ss_pred CCCeEEEeCCCHHHHHHHHHHHHHcC-CCeEEEEecCCCCCccCCchhhhhhhcCCeE--EEEeec--ccccCCCCCEEE
Confidence 79999999999999999999999864 24556554543111000000 0012333433 222000 12 22234499
Q ss_pred EEech-HHHHHHHHHHH---cCCCcEEEEecccc---CCCCHHHHHHHHHhcCCCCeEEEEecCCC---CCCchHHHHHH
Q psy9579 774 ACSGK-IYYDLFNFRKK---KNKNDVVIIRIEQL---YPFPNEDFLKILKKFRYFEKLIWAQDEPK---NQGAWPQIKEN 843 (887)
Q Consensus 774 ~~~G~-~~~~l~~~~~~---~~~~~v~vi~l~~L---~P~~~~~i~~~~~k~~~~~~~v~~qEe~~---n~G~~~~i~~~ 843 (887)
+|+|. +..+.++|++. .| +.|.||++=+| .|.+.+.+..+.+++.. |+--|+|. ..|.++-|...
T Consensus 665 iAtGsev~~EAL~AA~~L~~~G-I~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~----l~T~e~h~i~~~gGlgsaV~el 739 (845)
T 3ahc_A 665 ASAGDVPTQELMAASDALNKMG-IKFKVVNVVDLLKLQSRENNDEALTDEEFTE----LFTADKPVLFAYHSYAQDVRGL 739 (845)
T ss_dssp EEESHHHHHHHHHHHHHHHHTT-CCEEEEEECBGGGGSCTTTCTTSCCHHHHHH----HHCSSSCEEEEESSCHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCccCCccccccccCHHHhCc----EeecCCcceeeecCcHHHHHHH
Confidence 99995 66655655543 34 68999977666 78776666666666665 33445665 47887766544
Q ss_pred HHHhhccCCcEEEecCCCCC
Q psy9579 844 ILKYLNSTQKLIYVGRSCSA 863 (887)
Q Consensus 844 i~~~~~~~~~~~~~gr~~~~ 863 (887)
+.+. ....++.+.|-+...
T Consensus 740 l~~r-~~~~~l~v~G~~d~G 758 (845)
T 3ahc_A 740 IYDR-PNHDNFHVVGYKEQG 758 (845)
T ss_dssp TTTS-TTGGGEEEECCCSCC
T ss_pred HHhC-CCCceEEEEeccCCC
Confidence 4432 011478899988844
No 31
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.55 E-value=3.3e-15 Score=176.84 Aligned_cols=162 Identities=13% Similarity=0.055 Sum_probs=118.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceecc---
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTT--- 340 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST--- 340 (887)
+.+|...|.|+|+++|.+ +..+|++.|||++ ..| ++.|+.|.. |++| +++||.||+ ||+.+
T Consensus 420 g~~G~~l~~A~Gaala~~---------~~~vv~~~GDG~~-~~~--~~~l~~a~~--~~lp-~~~vv~nN~~~~~~~~~~ 484 (603)
T 4feg_A 420 ATMGVGIPGAIAAKLNYP---------ERQVFNLAGDGGA-SMT--MQDLATQVQ--YHLP-VINVVFTNCQYGFIKDEQ 484 (603)
T ss_dssp CCTTCHHHHHHHHHHHCT---------TSCEEEEEEHHHH-HHH--GGGHHHHHH--TTCC-CEEEEEECSBCHHHHHHH
T ss_pred ccccchhHHHhhHHHhCC---------CCcEEEEeccHHH-hhh--HHHHHHHHH--HCcC-eEEEEEECCchHHHHHHH
Confidence 345666788888877742 3468999999999 887 566999999 9999 888888886 88732
Q ss_pred -------CCCCcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEe---eecCCCCCCCCCC
Q psy9579 341 -------SPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIIC---FRKLGHNEQDTPS 410 (887)
Q Consensus 341 -------~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vt---YR~~GHne~DdP~ 410 (887)
.........+..++|++||+|+++|| +++++..+.+.|++ .+.+||+|||+.| ||.-+|.+.|||+
T Consensus 485 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~~~ 560 (603)
T 4feg_A 485 EDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLDSA 560 (603)
T ss_dssp HHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCCTT
T ss_pred HHhcCCCcccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhhhh
Confidence 11111234567889999999999998 45566666555542 1789999999999 7778999999998
Q ss_pred CCChHhhHH--HhhCCCHHHHHHHHHHHcCCCCHHHH
Q psy9579 411 LTQPLMYKK--IFKHPGIRELYSNKLKIQKILTKNES 445 (887)
Q Consensus 411 ~tqp~~Yr~--i~~~~dpi~~y~~~Li~~Gi~t~~e~ 445 (887)
.+.....+. .+..+||+.+|+++|.++|++++++.
T Consensus 561 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 561 MSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp TSCHHHHHHHHHHHTCTTCCCHHHHHHHTTC------
T ss_pred hhhHHHHHHHHhhCCcccCCchHHHHHHcCCchhhhh
Confidence 765443222 34469999999999999999998753
No 32
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.33 E-value=8.9e-12 Score=157.51 Aligned_cols=219 Identities=12% Similarity=0.104 Sum_probs=145.6
Q ss_pred CccccCCceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccch-hHHHHHHHhhHHHHhcCccCcEEEecccC
Q psy9579 598 NVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGA-QVIIDQFISSSEEKWGRISGLTLMLPHGY 676 (887)
Q Consensus 598 ~l~~~~g~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~A-q~~~Dq~i~~~~~kw~~~sglv~~lP~G~ 676 (887)
++.+.||..+++..+.||.+.+|.++|+|+.|.|++ .. ++.++ -.+++.+...+. ...|+||..+.+.
T Consensus 46 g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~--t~-----Ts~~Gl~lm~e~l~~~ag----~~~P~Vi~va~R~ 114 (1231)
T 2c42_A 46 GRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT--TF-----TASQGLLLMIPNMYKISG----ELLPGVFHVTARA 114 (1231)
T ss_dssp TCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE--EE-----ECHHHHHHHHHHHHHHHH----TTCCCEEEEEECC
T ss_pred CCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh--hh-----ccHHHHHHHHHHHHHHhC----CCCCEEEEECCCC
Confidence 445567888999999999999999999999999854 34 22222 223455432211 2479999998654
Q ss_pred C-C----CCccccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh--CCCCCcEEEEccccccccCC---CCCccc
Q psy9579 677 E-G----QGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII--RPIRKPLIIITPKSLLRKKE---ASSTLM 746 (887)
Q Consensus 677 ~-g----~GpeHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~--~~~r~Plv~~~pK~Llr~~~---~~s~~~ 746 (887)
. + -.++||.. + .+..+||.|+.|+||+++|+|+..+.. ..++.|||+|+.+.++.|.. .+.+.+
T Consensus 115 g~~~glsi~~~hsd~----~--~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~ 188 (1231)
T 2c42_A 115 IAAHALSIFGDHQDI----Y--AARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYA 188 (1231)
T ss_dssp CCSSSBCCSCCSHHH----H--TTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHH
T ss_pred ccCCCCcCCCchhhH----H--HHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHH
Confidence 2 2 24677753 2 267789999999999999999999822 23679999999998886621 111100
Q ss_pred ---cCCCC----cce---------eeccc--------------------------------------c-c-c-ccCCCCc
Q psy9579 747 ---DLATG----KFN---------KIINE--------------------------------------I-D-D-IIDPKKI 769 (887)
Q Consensus 747 ---d~~~g----~f~---------~~i~~--------------------------------------~-~-~-~~~~~~v 769 (887)
++.+. .|+ .+.+. . . + .-..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dA 268 (1231)
T 2c42_A 189 DMASLVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDA 268 (1231)
T ss_dssp HHHHTSCHHHHHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTC
T ss_pred HHHhhcChhhhhhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCC
Confidence 01000 010 00000 0 0 0 0012345
Q ss_pred eEEEEEechHHHHHHHHHHHc--CCCcEEEEeccccCCCCHHHHHHHH-HhcCCCCeEEEEecCCCCCCch
Q psy9579 770 KRIIACSGKIYYDLFNFRKKK--NKNDVVIIRIEQLYPFPNEDFLKIL-KKFRYFEKLIWAQDEPKNQGAW 837 (887)
Q Consensus 770 ~r~i~~~G~~~~~l~~~~~~~--~~~~v~vi~l~~L~P~~~~~i~~~~-~k~~~~~~~v~~qEe~~n~G~~ 837 (887)
+.+||+||.++..+.++.+.+ ..++|.||+|++++|||.++|.++| +++.+ |++++|. +..|+.
T Consensus 269 d~vIVa~Gs~~~~~~eAv~~L~~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~---i~VvE~~-~~~g~~ 335 (1231)
T 2c42_A 269 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKV---ITVLDRT-KEPGAP 335 (1231)
T ss_dssp SEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCE---EEEEESS-CCTTCS
T ss_pred CEEEEEeCHHHHHHHHHHHHHHhcCCceEEEEEEEeCCCCHHHHHHHHHhcCCE---EEEEECC-CCCCCC
Confidence 569999999888887776543 2268999999999999999999999 45555 7888665 777774
No 33
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=98.90 E-value=7e-10 Score=131.04 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=95.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
+.+|...|.|+|+++|.. +..+|++.|||+| ..+ .+.|+.|.. |++| +++||.|| +||++....
T Consensus 413 g~mG~~l~~AiGaala~~---------~~~vv~i~GDG~~-~~~--~~~L~ta~~--~~l~-~~ivv~NN~~~~~~~~~q 477 (590)
T 1v5e_A 413 ATMGIAIPGGLGAKNTYP---------DRQVWNIIGDGAF-SMT--YPDVVTNVR--YNMP-VINVVFSNTEYAFIKNKY 477 (590)
T ss_dssp CCTTCHHHHHHHHHHHCT---------TSCEEEEEEHHHH-HHH--GGGHHHHHH--TTCC-CEEEEEECSSCTTGGGTT
T ss_pred CcccChHHHHHHHHHhCC---------CCeEEEEEechHH-hch--HHHHHHHHH--hCCC-CEEEEEECCchHHHHHHH
Confidence 456777999999999852 3358999999999 877 588999999 9999 88888777 799886422
Q ss_pred Cc---------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecC
Q psy9579 344 DL---------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKL 401 (887)
Q Consensus 344 ~~---------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~ 401 (887)
.. ....+...+|++||+++++|+ +++++..+.+.|++..|+ ++|+|||+.|+|-.
T Consensus 478 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 478 EDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp SSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred HHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 11 122467779999999999997 689999999999987765 88999999999743
No 34
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=98.85 E-value=9.3e-10 Score=130.52 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=96.0
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC-
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP- 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~- 342 (887)
.++|...|.|+|+++|.+ +..+|++.|||++ ..+ .++|+.|.. |++| +++||.||+ ||+++..
T Consensus 442 G~~G~~l~~AiGaala~~---------~~~vv~i~GDGs~-~~~--~~~L~ta~~--~~l~-~~ivv~NN~~~~~~~~~~ 506 (616)
T 2pan_A 442 GPLGWTIPAALGVCAADP---------KRNVVAISGDFDF-QFL--IEELAVGAQ--FNIP-YIHVLVNNAYLGLIRQSQ 506 (616)
T ss_dssp CCTTCHHHHHHHHHHHCT---------TCEEEEEEEHHHH-HHT--GGGHHHHHH--TTCC-CEEEEEECSBCHHHHHHG
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEEcchhh-hCC--HHHHHHHHH--hCCC-eEEEEEECCcchHHHHHH
Confidence 566778999999999852 3468999999999 776 568999999 9999 888887775 8876421
Q ss_pred -------------CC--ccc----CCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecC
Q psy9579 343 -------------ND--LRS----TLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKL 401 (887)
Q Consensus 343 -------------~~--~rs----s~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~ 401 (887)
.. ... ..+...+|++||+++++|+ |++++..+.+.|+++.++.++|+|||+.|+|..
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 507 RAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp GGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred HHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 00 111 1456679999999999996 688999999999998888899999999999855
No 35
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.82 E-value=5.3e-10 Score=130.08 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=88.9
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
+++|...|.|+|+++|.+ +..+|++.|||+| ..| +|+|+.|.. |++| +++||.||+ ||+++...
T Consensus 401 g~~G~~l~~A~G~a~a~~---------~~~vv~~~GDG~~-~~~--~~~l~~a~~--~~l~-~~ivv~nN~~~~~~~~~~ 465 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP---------ERQVIAVIGDGSA-NYS--ISALWTAAQ--YNIP-TIFVIMNNGTYGALRWFA 465 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT---------TSCEEEEEEHHHH-TTT--GGGHHHHHH--HTCC-CEEEEEECSBCHHHHHHH
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEECCcHH-Hhh--HHHHHHHHH--hCCC-eEEEEEeCCcchHhHHHH
Confidence 777888999999999853 2348999999999 888 799999999 9999 888888885 89866421
Q ss_pred Cc----------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 344 DL----------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 344 ~~----------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. ....+...+|++||++.++||+ ++++..+ ++.+++.++|+|||+.|.|
T Consensus 466 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~a----l~~a~~~~gp~liev~~~~ 525 (528)
T 1q6z_A 466 GVLEAENVPGLDVPGIDFRALAKGYGVQALKADN--LEQLKGS----LQEALSAKGPVLIEVSTVS 525 (528)
T ss_dssp HHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESS--HHHHHHH----HHHHHTCSSCEEEEEEBCC
T ss_pred HHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHH----HHHHHHCCCcEEEEEEecC
Confidence 10 0234667799999999999985 5565555 4445567899999999976
No 36
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.81 E-value=1e-09 Score=128.70 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=90.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
+.+|...|.|+|+++|.+.++. +..+|++.|||+| ..+ .+.|+.|.. |++| +++||.||+ ||++....
T Consensus 413 g~mG~~l~~A~Gaala~~~~~~-----~~~vv~~~GDG~~-~~~--~~el~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 481 (563)
T 2vk8_A 413 GSIGFTTGATLGAAFAAEEIDP-----KKRVILFIGDGSL-QLT--VQEISTMIR--WGLK-PYLFVLNNDGYTIQKLIH 481 (563)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCT-----TCCEEEEEEHHHH-HHH--GGGHHHHHH--TTCC-CEEEEEESSSCHHHHHHS
T ss_pred hhhhhHHHHHHHHHHhCcccCC-----CCCEEEEEcchHh-hcc--HHHHHHHHH--cCCC-cEEEEEECCcchhhhhhh
Confidence 3457779999999999987654 5678999999999 764 566888888 9999 888887775 89865311
Q ss_pred C------cccCCcccccccccCCc---EEEEcCCCHHHHHHHHH-HHHHHHHccCCcEEEEEEeee
Q psy9579 344 D------LRSTLYCTDIGKIIEAP---VFHVNGDDPESVILVTK-IAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 344 ~------~rss~~~sd~Ak~~giP---~~~VdG~D~~AV~~a~~-~A~e~~r~~~~PvlIe~vtYR 399 (887)
. ........++|++||++ +++|| +++++..+.+ .|++ ..++|+|||+.|+|
T Consensus 482 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 482 GPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred CCCCCcccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 0 01224678899999999 99998 4777776666 4442 34579999999875
No 37
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.73 E-value=6.4e-09 Score=121.97 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=90.4
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
+.+|...|.|+|+++|.+ +. +..+|++.|||++ ..+ .++|+.|.. |++| +++||.|| +||++....
T Consensus 419 g~~G~~l~~AiGaa~a~~--~~-----~~~vv~i~GDG~~-~~~--~~~L~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 485 (563)
T 2uz1_A 419 GSMGVGFGTALGAQVADL--EA-----GRRTILVTGDGSV-GYS--IGEFDTLVR--KQLP-LIVIIMNNQSWGATLHFQ 485 (563)
T ss_dssp CCTTTHHHHHHHHHHHHH--HH-----TCEEEEEEEHHHH-GGG--TTHHHHHHH--HTCC-CEEEEEECSBCHHHHHHH
T ss_pred ccccChHHHHHHHHHHhh--CC-----CCeEEEEEccHHH-hCC--HHHHHHHHH--hCCC-eEEEEEeCCcchHHHHHH
Confidence 566778999999999986 22 4578999999999 887 468999999 9999 77777766 588876321
Q ss_pred -------Ccc----cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 344 -------DLR----STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 344 -------~~r----ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
... ...+...+|++||+++++|+ |++++..+.+.|++ .++|+|||+.|++
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 486 QLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp HHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred HHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 110 22467779999999999996 68888877777764 5899999999973
No 38
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.71 E-value=3.4e-09 Score=124.63 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=88.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
+++|...|.|+|+++|.+ +..+|++.|||++ ..+ .+.|+.|.. |++| +++||.||+ ||++....
T Consensus 436 g~mG~~l~~AiGaa~a~~---------~~~vv~i~GDG~~-~~~--~~~L~~a~~--~~l~-~~ivv~NN~~~~~~~~~~ 500 (573)
T 2iht_A 436 SSFGYGIPAAIGAQMARP---------DQPTFLIAGDGGF-HSN--SSDLETIAR--LNLP-IVTVVVNNDTNGLIELYQ 500 (573)
T ss_dssp CCTTCHHHHHHHHHHHST---------TSCEEEEEEHHHH-HHT--GGGHHHHHH--HTCC-CEEEEEECSBCHHHHHHH
T ss_pred cccccHHHHHHHHHHhCC---------CCcEEEEEccHHH-HhH--HHHHHHHHH--hCCC-eEEEEEECCcchhhHHHH
Confidence 566777999999999853 2358999999999 776 578999999 9999 777777775 88876410
Q ss_pred -----------CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 344 -----------DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 344 -----------~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
......+...+|++||+++++|+ |++++..+.+.|+ +.++|+|||+.|+|
T Consensus 501 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 561 (573)
T 2iht_A 501 NIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGA----ELGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHH----TSSSCEEEEEEBCC
T ss_pred HHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCC
Confidence 11122467789999999999996 6788776666665 46899999999998
No 39
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.70 E-value=3.1e-09 Score=124.91 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=88.6
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
+.+|...|.|+|+++|.+ +..+|++.|||++ ..+ .+.|+.|.. |++| +++||.|| +||++....
T Consensus 420 g~mG~~l~~AiGaala~~---------~~~vv~i~GDG~~-~~~--~~~L~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 484 (566)
T 1ozh_A 420 QTMGVALPWAIGAWLVNP---------ERKVVSVSGDGGF-LQS--SMELETAVR--LKAN-VLHLIWVDNGYNMVAIQE 484 (566)
T ss_dssp CCTTCHHHHHHHHHHHST---------TSEEEEEEEHHHH-HHH--TTHHHHHHH--HTCC-EEEEEEECSBCHHHHHHH
T ss_pred ccccchHHHHHHHHHhCC---------CCCEEEEEcChHH-hcc--HHHHHHHHH--hCCC-cEEEEEECCchhHHHHHH
Confidence 456777999999999853 3468999999999 775 456999999 9999 88888888 588865211
Q ss_pred ---------CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeec
Q psy9579 344 ---------DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRK 400 (887)
Q Consensus 344 ---------~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~ 400 (887)
......+...+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.|+|-
T Consensus 485 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~~ 544 (566)
T 1ozh_A 485 EKKYQRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAM----DVDGPAVVAIPVDYR 544 (566)
T ss_dssp HHHHSSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHH----HSSSCEEEEEEBCCT
T ss_pred HHhcCCCccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence 11122467789999999999997 5677777776665 468999999999873
No 40
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.64 E-value=3.5e-09 Score=125.03 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=88.7
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
+.+|...|.|+|+++|.+ +..+|++.|||+| ..+ .+.|+.|.. |++| +++||.||+ ||++....
T Consensus 424 g~mG~~l~~AiGaala~~---------~~~vv~i~GDG~~-~~~--~~~L~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 488 (589)
T 2pgn_A 424 GILGCGFPMALGAQLAEP---------NSRVFLGTGDGAL-YYH--FNEFRVAVE--HKLP-VITMVFTNESYGANWTLM 488 (589)
T ss_dssp CCTTCHHHHHHHHHHHCT---------TSCEEEEEEHHHH-HHH--GGGHHHHHH--TTCC-CEEEEEECSBCHHHHHHH
T ss_pred chhhhHHHHHHHHHHhCC---------CCcEEEEEeeHHH-Hhh--HHHHHHHHH--hCCC-eEEEEEECCCcccchHHH
Confidence 456777899999999853 2358999999999 776 499999999 9999 777777776 88876321
Q ss_pred ---------CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecC
Q psy9579 344 ---------DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKL 401 (887)
Q Consensus 344 ---------~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~ 401 (887)
......+...+|++||+++++|+. ++++..+.+.|++ .++|+|||+.|+|-.
T Consensus 489 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~gp~liev~~~~~~ 549 (589)
T 2pgn_A 489 NHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRE--TGDIAGALQRAID----SGKPALIEIPVSKTQ 549 (589)
T ss_dssp HHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTT--TCCHHHHHHHHHH----HCSCEEEEEECCSSS
T ss_pred HhhcCCCccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 111235677899999999999974 5666666666653 589999999998743
No 41
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.64 E-value=1.3e-08 Score=119.00 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=85.8
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC-
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP- 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~- 342 (887)
+++|...|.|+|+++|.+ +..+|++.|||++ ..+ .+.|..+.. |++| +++||.||+ ||++...
T Consensus 408 g~mG~~l~~A~G~a~a~~---------~~~vv~~~GDG~~-~~~--~~el~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 472 (552)
T 1ovm_A 408 GSIGYTLAAAFGAQTACP---------NRRVIVLTGDGAA-QLT--IQELGSMLR--DKQH-PIILVLNNEGYTVERAIH 472 (552)
T ss_dssp CCTTHHHHHHHHHHHHCT---------TSCEEEEEEHHHH-HHH--TTHHHHHHH--TTCC-CEEEEEESSSCHHHHHHS
T ss_pred HhhhhHHHHHHHHHHhCC---------CCcEEEEECchHH-HhH--HHHHHHHHH--hCCC-CEEEEEECCCCeEEEeec
Confidence 456777999999999853 2358999999999 664 556777888 9999 888888775 8887421
Q ss_pred ---CC--cccCCcccccccccCC----cEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 343 ---ND--LRSTLYCTDIGKIIEA----PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 343 ---~~--~rss~~~sd~Ak~~gi----P~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. .....+...+|++||+ ++++|+ +++++..+.+.| ++.++|+|||+.|++
T Consensus 473 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~ 532 (552)
T 1ovm_A 473 GAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKV----AHHERLSLIEVMLPK 532 (552)
T ss_dssp CTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHH----TTCSSEEEEEEECCT
T ss_pred cCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEcCc
Confidence 10 1123467889999999 899997 577776666554 456899999999986
No 42
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.62 E-value=8.6e-09 Score=120.97 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=87.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
..+|...|.|+|+++|.+ +..+|++.|||++ ..+ .+.|+.|.. |++| +++||.|| +||++....
T Consensus 409 g~mG~~l~~A~G~ala~~---------~~~vv~~~GDG~~-~~~--~~eL~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 473 (566)
T 2vbi_A 409 GHIGWSVPSAFGNAMGSQ---------DRQHVVMVGDGSF-QLT--AQEVAQMVR--YELP-VIIFLINNRGYVIEIAIH 473 (566)
T ss_dssp CCTTTHHHHHHHHHHTCT---------TSEEEEEEEHHHH-HHH--GGGHHHHHH--TTCC-CEEEEEECSSCHHHHTTS
T ss_pred cchhhHHHHHHHHHHhCC---------CCcEEEEEcchHH-Hhh--HHHHHHHHH--hCCC-cEEEEEECCcceEEEeec
Confidence 345777899999998852 3468999999999 774 455889888 9999 77777666 799886532
Q ss_pred C----cccCCcccccccccCC-----cEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 344 D----LRSTLYCTDIGKIIEA-----PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 344 ~----~rss~~~sd~Ak~~gi-----P~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
+ .....+...+|++||+ ++++|+ +++++..+.+.|++.. ++|+|||+.|+|
T Consensus 474 ~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~~---~gp~liev~~~~ 533 (566)
T 2vbi_A 474 DGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKANT---RGPTLIECQIDR 533 (566)
T ss_dssp CCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHCC---SSCEEEEEECCT
T ss_pred cCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhcC---CCcEEEEEEeCc
Confidence 1 1123467889999999 999997 6888877777665421 789999999986
No 43
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.62 E-value=1.6e-08 Score=119.29 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=88.5
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCC-
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSP- 342 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~- 342 (887)
.++|...|.|+|+++|.+ +..+|++.|||++ ..+ .++|+.|.. |++| +++||.|| +||++...
T Consensus 426 G~~G~~l~~AiGaala~~---------~~~vv~i~GDGs~-~~~--~~~L~ta~~--~~l~-~~ivv~NN~~~~~~~~~~ 490 (590)
T 1ybh_A 426 GAMGFGLPAAIGASVANP---------DAIVVDIDGDGSF-IMN--VQELATIRV--ENLP-VKVLLLNNQHLGMVMQWE 490 (590)
T ss_dssp CCTTCHHHHHHHHHHHCT---------TSCEEEEEEHHHH-HHT--TTHHHHHHH--TTCC-EEEEEEECSBCHHHHHHH
T ss_pred ccccchHHHHHHHHHhCC---------CCcEEEEEccchh-hcc--HHHHHHHHH--hCCC-cEEEEEECCcchHHHHHH
Confidence 456777899999999853 2358999999999 776 568999999 9999 88888777 58876421
Q ss_pred ----------CCc-c------cCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecC
Q psy9579 343 ----------NDL-R------STLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKL 401 (887)
Q Consensus 343 ----------~~~-r------ss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~ 401 (887)
.+. . ...+...+|++||+++++|+ |++++..+.+.|+ +.++|+|||+.|+|..
T Consensus 491 ~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~~~ 560 (590)
T 1ybh_A 491 DRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML----DTPGPYLLDVICPHQE 560 (590)
T ss_dssp HHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH----HSSSCEEEEEECCTTC
T ss_pred HHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCc
Confidence 000 1 12466779999999999996 6888877777665 4589999999999854
No 44
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.61 E-value=1.5e-08 Score=119.11 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=86.4
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
+.+|...|.|+|+++|.+ +..+|++.|||++ ..+ .+.|+.|.. |++| +++||.|| +||++....
T Consensus 425 g~mG~~l~~A~Gaala~~---------~~~vv~~~GDG~~-~~~--~~eL~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 489 (570)
T 2vbf_A 425 GSIGYTFPAALGSQIADK---------ESRHLLFIGDGSL-QLT--VQELGLSIR--EKLN-PICFIINNDGYTVEREIH 489 (570)
T ss_dssp CCTTTHHHHHHHHHHHCT---------TSEEEEEEEHHHH-HHH--GGGHHHHHH--TTCC-CEEEEEESSSCHHHHHHS
T ss_pred hhhhhhHHHHHHHHHhCC---------CCcEEEEEcchhh-hcC--HHHHHHHHH--cCCC-CEEEEEECCchHHHHHHh
Confidence 345777999999999852 3468999999999 774 455888888 9999 77777766 788876321
Q ss_pred ---Cc---ccCCcccccccccCCc-----EEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 344 ---DL---RSTLYCTDIGKIIEAP-----VFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 344 ---~~---rss~~~sd~Ak~~giP-----~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.. ....+..++|++||++ +++|+ +++++..+.+.| +++.++|+|||+.|+|
T Consensus 490 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a---~~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 490 GPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEA---QADVNRMYWIELVLEK 551 (570)
T ss_dssp CTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred ccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence 10 1224678899999999 89996 577776666654 3567889999999986
No 45
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.61 E-value=1.9e-08 Score=120.78 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=86.4
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC--
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP-- 342 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~-- 342 (887)
.+|...|.|+|+++|.. +..+|++.|||+| ..+ +. .|+.|.. |++| +++||.||+ ||+.+..
T Consensus 514 ~mG~~lpaAiGaalA~p---------~~~Vv~i~GDGsf-~~~-~~-eL~ta~~--~~l~-v~ivV~NN~~~g~~~~~~~ 578 (677)
T 1t9b_A 514 TMGYGLPAAIGAQVAKP---------ESLVIDIDGDASF-NMT-LT-ELSSAVQ--AGTP-VKILILNNEEQGMVTQWQS 578 (677)
T ss_dssp CTTCHHHHHHHHHHHCT---------TSEEEEEEEHHHH-HHH-GG-GHHHHHH--HTCC-CEEEEEECSSCHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCC---------CCeEEEEEeehHH-hcc-HH-HHHHHHH--hCCC-eEEEEEeCCCchhhhhhhh
Confidence 45667899999999841 4579999999999 764 44 4888888 9999 777777765 8876521
Q ss_pred ----CC----cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeec
Q psy9579 343 ----ND----LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRK 400 (887)
Q Consensus 343 ----~~----~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~ 400 (887)
.. .....+...+|++||+++++|+ +++++..+.+.|++ .++|+|||+.|+|.
T Consensus 579 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~ 638 (677)
T 1t9b_A 579 LFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKK 638 (677)
T ss_dssp HHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSS
T ss_pred hhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCC
Confidence 10 0123467789999999999995 68888777776653 58899999999984
No 46
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.55 E-value=2e-08 Score=117.92 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=84.0
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~~ 343 (887)
+.+|...|.|+|+++|.. +..+|++.|||++ . ...+.|+.|.. |++| +++||.||+ ||++....
T Consensus 422 g~mG~~l~~A~G~ala~~---------~~~vv~i~GDG~~-~--~~~~~l~ta~~--~~l~-~~ivv~nN~~~~~~~~~~ 486 (565)
T 2nxw_A 422 AGMGFGVPAGIGAQCVSG---------GKRILTVVGDGAF-Q--MTGWELGNCRR--LGID-PIVILFNNASWEMLRTFQ 486 (565)
T ss_dssp CCTTCHHHHHHHHHHHTT---------TCCEEEEEEHHHH-H--HHGGGGGGHHH--HTCC-CEEEEEECSBCHHHHHHC
T ss_pred ccccccchHHHHHHHhCC---------CCcEEEEEechHH-H--hhHHHHHHHHH--hCCC-CEEEEEECCCCcEEeeec
Confidence 345777899999999852 2357899999999 4 44566666677 8999 777777774 88864321
Q ss_pred -----CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcE-EEEEEeee
Q psy9579 344 -----DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDC-IINIICFR 399 (887)
Q Consensus 344 -----~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~Pv-lIe~vtYR 399 (887)
......+...+|++||+++++|| +++++..+.+.|++ .++|+ |||+.|+|
T Consensus 487 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 487 PESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp TTCGGGBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred ccCCCCcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 11123467789999999999997 57888777777654 46898 99999985
No 47
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.51 E-value=4e-08 Score=115.16 Aligned_cols=109 Identities=9% Similarity=0.090 Sum_probs=76.3
Q ss_pred cccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc-eeccCC----
Q psy9579 268 EIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI-GFTTSP---- 342 (887)
Q Consensus 268 e~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~-g~ST~~---- 342 (887)
+. .|.|+|++.|. +..+|++.|||+| .-. + ..|+.+.. |++| +++||.||+. |+....
T Consensus 420 G~-l~~A~Gaa~a~----------~~~vv~i~GDGsf-~~~-~-~eL~ta~~--~~lp-v~ivv~NN~~~~~~~~~~~~~ 482 (556)
T 3hww_A 420 GL-LSTAAGVQRAS----------GKPTLAIVGDLSA-LYD-L-NALALLRQ--VSAP-LVLIVVNNNGGQIFSLLPTPQ 482 (556)
T ss_dssp SH-HHHHHHHHHHH----------CCCEEEEEEHHHH-HHT-G-GGHHHHTT--CSSC-EEEEEEESCC-----------
T ss_pred cH-HHHHHHHHhcC----------CCcEEEEEccHHh-hhc-c-hhhHhhcc--cCCC-cEEEEEECCCCCcccCCCCcc
Confidence 44 89999999982 2348899999999 433 3 33777777 9999 9999999984 554311
Q ss_pred ---C---CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 343 ---N---DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 343 ---~---~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
. ......+...+|++||++.++|+ +++++..+ ++.+++.++|+|||+.++|
T Consensus 483 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~a----l~~a~~~~gp~liev~~~~ 539 (556)
T 3hww_A 483 SERERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETA----FADAWRTPTTTVIEMVVND 539 (556)
T ss_dssp ------CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHH----HHHHTTSSSEEEEEEECCS
T ss_pred hhHHHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHH----HHHHHhCCCCEEEEEECCc
Confidence 0 11123567789999999999996 55666544 4455567899999999865
No 48
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.49 E-value=8.9e-08 Score=112.01 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=83.3
Q ss_pred CcccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC
Q psy9579 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN 343 (887)
Q Consensus 265 Shle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~ 343 (887)
..+|.-.|.|+|++.|.. +.-+|++.|||++ ..+ .+.|+.+.. |++| +++||.|| .||+.+...
T Consensus 406 g~mG~~l~~AiGaala~~---------~~~vv~i~GDGs~-~~~--~~~L~ta~~--~~l~-~~ivv~nN~~~g~~~~~~ 470 (549)
T 3eya_A 406 GSMANAMPQALGAQATEP---------ERQVVAMCGDGGF-SML--MGDFLSVVQ--MKLP-VKIVVFNNSVLGFVAMEM 470 (549)
T ss_dssp CCTTCHHHHHHHHHHHST---------TSCEEEEEEHHHH-HHT--GGGHHHHHH--TTCC-CEEEEEECSBCCCC----
T ss_pred chhhhHHHHHHHHHHhCC---------CCcEEEEEccchh-hcc--HHHHHHHHH--hCCC-eEEEEEeCCccHHHHHHH
Confidence 455667888999888753 2348999999999 665 567888888 9999 77777766 588754211
Q ss_pred C---------cccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecC
Q psy9579 344 D---------LRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKL 401 (887)
Q Consensus 344 ~---------~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~ 401 (887)
. .....+...+|++||++.++|+ |++++..+.+.|+ +.++|+|||+.+.|..
T Consensus 471 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~~~ 531 (549)
T 3eya_A 471 KAGGYLTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAF----SIDGPVLVDVVVAKEE 531 (549)
T ss_dssp --------CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHH----HSSSCEEEEEEBCCCC
T ss_pred HhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecccc
Confidence 1 0112456779999999999995 6667766666554 4589999999998743
No 49
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.49 E-value=1.3e-07 Score=110.83 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=84.7
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-c-eeccCC-
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-I-GFTTSP- 342 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~-g~ST~~- 342 (887)
.+|...|.|+|++.| . +..+|++.|||+| ... .+.|+.+.. |++| +++||.||+ | ++....
T Consensus 422 ~~G~~l~~AiGaa~a---~-------~~~vv~i~GDGsf-~~~--~~el~ta~~--~~l~-~~ivv~NN~~~~~~~~~~~ 485 (564)
T 2q28_A 422 VMGIGMGYAIGASVT---S-------GSPVVAIEGDSAF-GFS--GMEIETICR--YNLP-VTIVIFNNGGIYRGDGVDL 485 (564)
T ss_dssp CTTCHHHHHHHHHHH---H-------CSCEEEEEEHHHH-HTT--GGGHHHHHH--TTCC-EEEEEEECSBSSCSCCCCT
T ss_pred cccchHHHHHHHhhc---C-------CCcEEEEEcchHh-hcc--HHHHHHHHH--hCCC-eEEEEEeCchhHHHHHHHH
Confidence 456668999999987 1 3358999999999 664 355788888 9999 999999998 3 443211
Q ss_pred ------C--CcccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeec
Q psy9579 343 ------N--DLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRK 400 (887)
Q Consensus 343 ------~--~~rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~ 400 (887)
. ......+...+|++||++.++|+ +++++..+.+.|+ +.++|+|||+.|.|.
T Consensus 486 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~ 545 (564)
T 2q28_A 486 SGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGI----QSRKPTIINVVIDPA 545 (564)
T ss_dssp TSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHH----HHTSCEEEEEEBCTT
T ss_pred hccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 0 00113467789999999999996 6888888877776 357899999999874
No 50
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.45 E-value=1.2e-07 Score=111.23 Aligned_cols=112 Identities=21% Similarity=0.136 Sum_probs=84.3
Q ss_pred ccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCc--eeccCC--
Q psy9579 267 LEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI--GFTTSP-- 342 (887)
Q Consensus 267 le~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~--g~ST~~-- 342 (887)
+|...|.|+|++.| . +..+|++.|||+| ... .+.|+.+.. |++| +++||.||+. ++....
T Consensus 428 ~G~~l~~AiGaala---~-------~~~vv~i~GDGsf-~~~--~~el~ta~~--~~l~-~~ivv~NN~~~~~~~~~~~~ 491 (568)
T 2c31_A 428 MGIGMGYCVAAAAV---T-------GKPVIAVEGDSAF-GFS--GMELETICR--YNLP-VTVIIMNNGGIYKGNEADPQ 491 (568)
T ss_dssp SSCHHHHHHHHHHH---H-------CSCEEEEEEHHHH-HTT--GGGHHHHHH--TTCC-EEEEEEESSBSSCSCCCCSB
T ss_pred ccccHHHHHHHHhC---C-------CCcEEEEEcchHh-hcc--HHHHHHHHH--hCCC-eEEEEEeCchhHHHHHHHhh
Confidence 46668899999987 1 3358999999999 653 466888888 9999 9999999983 333211
Q ss_pred -CCc----ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeec
Q psy9579 343 -NDL----RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRK 400 (887)
Q Consensus 343 -~~~----rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~ 400 (887)
.+. ........+|++||++.++|+ +++++..+.+.|+ +.++|+|||+.|+|.
T Consensus 492 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~ 548 (568)
T 2c31_A 492 PGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV----ASGKPCLINAMIDPD 548 (568)
T ss_dssp TTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHH----HHTSCEEEEEEBCTT
T ss_pred cCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 000 123466779999999999996 6888888877776 357899999999864
No 51
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.43 E-value=3.4e-08 Score=116.95 Aligned_cols=112 Identities=14% Similarity=0.038 Sum_probs=82.9
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCC-
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPN- 343 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~- 343 (887)
-++...|.|+|+++|. +..+|++.|||+| ..+ +. .|+.+.. |++| +++||.|| +||+.....
T Consensus 456 ~ig~~l~~AiGaala~----------~~~vv~i~GDGsf-~~~-~~-eL~ta~~--~~lp-~~ivv~NN~~~~i~~~~~~ 519 (604)
T 2x7j_A 456 GIDGVVSSAMGVCEGT----------KAPVTLVIGDLSF-YHD-LN-GLLAAKK--LGIP-LTVILVNNDGGGIFSFLPQ 519 (604)
T ss_dssp CSSSHHHHHHHHHHHH----------TSCEEEEEEHHHH-HHT-GG-GGHHHHH--HCCC-EEEEEEECSSCGGGGGSGG
T ss_pred CcCcHHHHHHHHHhcC----------CCcEEEEEccHHH-HhH-HH-HHHHhhh--cCCC-eEEEEEeCCCCcccccCCC
Confidence 3456689999999983 1247899999999 776 44 4999999 9999 88777766 788754221
Q ss_pred Cc-----------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 344 DL-----------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 344 ~~-----------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
.+ ....+...+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.|+|
T Consensus 520 ~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 520 ASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp GSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred CccchhhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 10 112467789999999999997 5777766555544 56899999999865
No 52
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.41 E-value=7.1e-08 Score=113.23 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=86.2
Q ss_pred cccccccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCCCC
Q psy9579 266 HLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSPND 344 (887)
Q Consensus 266 hle~v~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~~~ 344 (887)
.+|...|.|+|++.|.. +..+|++.|||+| ..+ .+.|+.+.. |++| +++||.|| +||++....+
T Consensus 414 ~~G~~l~~A~G~ala~~---------~~~vv~i~GDGs~-~~~--~~el~ta~~--~~l~-~~ivv~NN~~~~~~~~~~~ 478 (568)
T 2wvg_A 414 HIGWSVPAAFGYAVGAP---------ERRNILMVGDGSF-QLT--AQEVAQMVR--LKLP-VIIFLINNYGYTIEVMIHD 478 (568)
T ss_dssp CTTTHHHHHHHHHHHCT---------TSEEEEEEEHHHH-HHH--GGGHHHHHH--TTCC-CEEEEEECSSCHHHHTTSC
T ss_pred hhhhHHHHHHHHHHhCC---------CCcEEEEEcChhH-hcc--HHHHHHHHH--cCCC-cEEEEEECCcceEeeeecc
Confidence 45777999999999852 3468999999999 764 455888888 9999 76666555 6998875321
Q ss_pred c----ccCCcccccccccCC---------cEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 345 L----RSTLYCTDIGKIIEA---------PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 345 ~----rss~~~sd~Ak~~gi---------P~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
. ........+|++||+ +.++|+ +++++..+.+.|++. .++|+|||+.|+|
T Consensus 479 ~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 479 GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp CGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 1 122356779999999 899996 678887777777653 2789999999986
No 53
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.26 E-value=3.1e-07 Score=108.11 Aligned_cols=106 Identities=19% Similarity=0.123 Sum_probs=70.2
Q ss_pred ccccchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeC-CceeccCC-CCc---
Q psy9579 271 NPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINN-QIGFTTSP-NDL--- 345 (887)
Q Consensus 271 ~Pva~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NN-q~g~ST~~-~~~--- 345 (887)
.|.|+|++.+ +.-+|++.|||+| .-. .+.|+.|.- |++| +++||.|| .||+.... ..+
T Consensus 442 l~~AiGaa~~-----------~~~vv~i~GDGsf-~~~--~~eL~ta~~--~~l~-~~ivv~NN~~~g~~~~~~~~~~~~ 504 (578)
T 3lq1_A 442 VSSALGASVV-----------FQPMFLLIGDLSF-YHD--MNGLLMAKK--YKMN-LTIVIVNNDGGGIFSFLPQANEPK 504 (578)
T ss_dssp HHHHHHHTTT-----------SSSEEEEEEHHHH-HHT--GGGGHHHHH--TTCC-EEEEEECCC---------------
T ss_pred HHHHHHHhcC-----------CCCEEEEEchHHH-Hhh--HHHHHhhcc--CCCC-eEEEEEECCcCccccccccccccc
Confidence 6888888642 2348999999999 433 345778888 9999 99999888 57765421 000
Q ss_pred --------ccCCcccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeee
Q psy9579 346 --------RSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFR 399 (887)
Q Consensus 346 --------rss~~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR 399 (887)
....+...+|++||+++++|+ +++++..+.+.| .+.++|+|||+.+.|
T Consensus 505 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a----~~~~gp~liev~~~~ 560 (578)
T 3lq1_A 505 YFESLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKA----SYHKGLDIIEVKTNR 560 (578)
T ss_dssp ----------CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHH----TTSSSEEEEEEC---
T ss_pred hhhhhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHH----HhCCCCEEEEEECCc
Confidence 012467789999999999996 677776665555 456899999999865
No 54
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=98.19 E-value=3e-06 Score=79.82 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=56.6
Q ss_pred EEEEEechHHHHHHHHHHH---cCCCcEEEEeccccCCCCHHHHHHHHHhcCCCCeEEEEecCCCCCCchHHHHHHH
Q psy9579 771 RIIACSGKIYYDLFNFRKK---KNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENI 844 (887)
Q Consensus 771 r~i~~~G~~~~~l~~~~~~---~~~~~v~vi~l~~L~P~~~~~i~~~~~k~~~~~~~v~~qEe~~n~G~~~~i~~~i 844 (887)
.+|+|||.++..+++|.+. .| +++.||++++++|||.+.|.+.++++.+ ++++ ||..++|++..|+..+
T Consensus 16 v~iv~~Gs~~~~a~eA~~~L~~~G-i~v~vi~~r~~~P~d~~~l~~~~~~~~~---vvvv-E~~~~G~l~~~i~~~~ 87 (118)
T 3ju3_A 16 ITFVTWGSQKGPILDVIEDLKEEG-ISANLLYLKMFSPFPTEFVKNVLSSANL---VIDV-ESNYTAQAAQMIKLYT 87 (118)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTT-CCEEEEEECSSCSCCHHHHHHHHTTCSC---CCCC-CCCCCCCHHHHHHHHH
T ss_pred EEEEEECccHHHHHHHHHHHHHCC-CceEEEEECeEecCCHHHHHHHHcCCCE---EEEE-ECCCCCcHHHHHHHHc
Confidence 4899999988888776653 34 6999999999999999999999999987 4555 5566889998887643
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=96.04 E-value=0.0095 Score=75.90 Aligned_cols=106 Identities=9% Similarity=-0.027 Sum_probs=71.6
Q ss_pred eEEEEeecCc-ccccccHHHHHHHHhccCCCCCCCEEEEEEeCC-ceeccCC------CCcc----------cCCccccc
Q psy9579 293 VLPVLVHGDA-AFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQ-IGFTTSP------NDLR----------STLYCTDI 354 (887)
Q Consensus 293 ~v~i~~hGDg-A~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq-~g~ST~~------~~~r----------ss~~~sd~ 354 (887)
.-+|++.||| ++ .-| +.|-.+ +.- +++| +++||.||+ ||.|--. .... ...+...+
T Consensus 954 ~~Vv~i~GDG~~~-~mg-~~eL~t-a~~--~~~~-v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~i 1027 (1231)
T 2c42_A 954 KSVWIFGGDGWAY-DIG-YGGLDH-VLA--SGED-VNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARM 1027 (1231)
T ss_dssp CEEEEEEEHHHHH-TTT-HHHHHH-HHH--TTCS-CEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHH
T ss_pred CcEEEEeCcHHHH-Hcc-hHHHHH-HHH--hCCC-eEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHH
Confidence 5799999999 66 666 334333 334 7899 777777776 4544210 0000 11357779
Q ss_pred ccccCCcEEE-EcC-CCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCCCCCC
Q psy9579 355 GKIIEAPVFH-VNG-DDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTP 409 (887)
Q Consensus 355 Ak~~giP~~~-VdG-~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne~DdP 409 (887)
|++||++.+. ++- .|++.+..+.++|++ .+||+|||+.+--. -|+-.+++
T Consensus 1028 A~a~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c~-~~~~~~~~ 1079 (1231)
T 2c42_A 1028 VMTYGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATCI-NQGLRKGM 1079 (1231)
T ss_dssp HHTTSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCCG-GGCBTTCG
T ss_pred HHHCCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecCc-ccCCCCCh
Confidence 9999999996 445 599999999988885 48999999987544 24443343
No 56
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=53.95 E-value=15 Score=40.95 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=36.8
Q ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCCC
Q psy9579 360 APVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNE 405 (887)
Q Consensus 360 iP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHne 405 (887)
+....+.-.+|.+++..+..|++.+.+.+.||++...++ . +|+.
T Consensus 150 ~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~~ 193 (395)
T 1yd7_A 150 HSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHMR 193 (395)
T ss_dssp CCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHCE
T ss_pred cceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCee
Confidence 345666778999999999999999999999999998876 3 6764
No 57
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=43.87 E-value=76 Score=36.86 Aligned_cols=104 Identities=10% Similarity=-0.025 Sum_probs=66.6
Q ss_pred cchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccc
Q psy9579 274 VEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTD 353 (887)
Q Consensus 274 a~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd 353 (887)
|.|.||+. + +..++++..|=|++..-.-++|+. . -++| +|+|.-+-.....-.- .....+ |
T Consensus 59 A~GyAr~t---g-----~p~v~~~TsGpG~~N~~~gv~~A~----~--~~vP-ll~itg~~~~~~~~~~---~~~Q~~-d 119 (589)
T 2pgn_A 59 VNGYNYVK---D-----RSAAVGAWHCVGNLLLHAAMQEAR----T--GRIP-AVHIGLNSDGRLAGRS---EAAQQV-P 119 (589)
T ss_dssp HHHHHHHH---T-----SCCEEEEEEGGGGGGCHHHHHHHH----H--TTCC-EEEEEEESCGGGTTCT---TCSSCC-C
T ss_pred HHHHHHHH---C-----CCEEEEEecCchHHHHHHHHHHHH----h--cCCC-EEEEecCCcccccCCC---Cccccc-C
Confidence 55666543 2 267899999999886555555554 3 6779 9999776543221110 011111 2
Q ss_pred cccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 354 IGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 354 ~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
....-.+--..+.=.+|+.+...+..|+..+..++ |||.|++=
T Consensus 120 ~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (589)
T 2pgn_A 120 WQSFTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIP 163 (589)
T ss_dssp GGGGTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred hhhccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeC
Confidence 22222344455666789999999999999999887 99999873
No 58
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=42.69 E-value=52 Score=37.95 Aligned_cols=95 Identities=5% Similarity=-0.001 Sum_probs=59.5
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
..++++..|=|++..-.-++|+ .. -++| +|+|+-+-.....-....|.. .+..++.+.+- -..+.=.+|+
T Consensus 67 p~v~~~TsGpG~~N~~~~l~~A----~~--~~~P-ll~itg~~~~~~~~~~~~Q~~-~d~~~~~~~~t--k~~~~v~~~~ 136 (563)
T 2uz1_A 67 LGVALVTAGGGFTNAVTPIANA----WL--DRTP-VLFLTGSGALRDDETNTLQAG-IDQVAMAAPIT--KWAHRVMATE 136 (563)
T ss_dssp CEEEEECTTHHHHTTHHHHHHH----HH--HTCC-EEEEEEECCGGGTTSCCTTCC-CCHHHHHGGGC--SEEEECCCGG
T ss_pred CEEEEEccCccHHHHHHHHHHH----Hh--cCCC-EEEEeCCCCcccCCchhhhhh-ccHHHHhhhhh--ceEEEcCCHH
Confidence 6788888888887555555554 34 5789 999977654322111111110 11222333332 2344457888
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+...+..|+..+..++ |||.|++=
T Consensus 137 ~~~~~l~~A~~~a~~~~~GPV~l~iP 162 (563)
T 2uz1_A 137 HIPRLVMQAIRAALSAPRGPVLLDLP 162 (563)
T ss_dssp GHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 99999999999999887 99999873
No 59
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=42.16 E-value=46 Score=38.53 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=57.6
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccC-CCCcccCCcccccccccCCcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS-PNDLRSTLYCTDIGKIIEAPVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~-~~~~rss~~~sd~Ak~~giP~~~VdG~D~ 370 (887)
..++++..|=|++..-.-++|+ .. -++| +|+|+-+-.....-. -..| ..+...+.+. +--..+.=.+|
T Consensus 74 p~v~~~TsGpG~~N~~~~v~~A----~~--~~~P-ll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~--~~k~~~~v~~~ 142 (573)
T 2iht_A 74 PQACWATLGPGMTNLSTGIATS----VL--DRSP-VIALAAQSESHDIFPNDTHQ--CLDSVAIVAP--MSKYAVELQRP 142 (573)
T ss_dssp CEEEEECTTHHHHHHHHHHHHH----HH--HTCC-EEEEEEESCGGGCCTTTSTT--CCCHHHHHGG--GSSEEEECCSG
T ss_pred CEEEEEccCchHHHHHHHHHHH----Hh--hCCC-EEEEcccCcccccCCcCccc--cCCHHHHHHh--HhhEEEEcCCH
Confidence 6778888887776333334444 33 5689 999977654322111 0011 1112222222 33344555788
Q ss_pred HHHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
+.+...+..|+..+..++ |||.|++=
T Consensus 143 ~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (573)
T 2iht_A 143 HEITDLVDSAVNAAMTEPVGPSFISLP 169 (573)
T ss_dssp GGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 889999999999999887 99999974
No 60
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=41.96 E-value=39 Score=39.32 Aligned_cols=94 Identities=7% Similarity=-0.039 Sum_probs=56.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
..++++..|=|++..=.-++|+ .. -++| +|+|+-.-....-..-..| ..+...+.+.+- -..+.=.+|+
T Consensus 76 p~v~~~TsGpG~~N~~~gv~~A----~~--~~vP-ll~itg~~~~~~~g~~~~Q--~~d~~~~~~~~~--k~~~~v~~~~ 144 (590)
T 1ybh_A 76 PGICIATSGPGATNLVSGLADA----LL--DSVP-LVAITGQVPRRMIGTDAFQ--ETPIVEVTRSIT--KHNYLVMDVE 144 (590)
T ss_dssp CEEEEECTTHHHHTTHHHHHHH----HH--HTCC-EEEEEEECCGGGTTTTCTT--CCCHHHHHGGGS--SEEEECCCGG
T ss_pred CEEEEeccCchHHHHHHHHHHH----Hh--hCCC-EEEEeCcCCccccCCCccc--ccCHHHHHHHHh--CeEEecCCHH
Confidence 6778888888877433333333 34 6889 9999776432211100000 011222222222 2344457888
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+..+++.|+..++.+. |||+|++=
T Consensus 145 ~i~~~l~~A~~~a~~~~~GPV~l~iP 170 (590)
T 1ybh_A 145 DIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 99999999999998875 89999873
No 61
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=39.61 E-value=45 Score=38.57 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=60.9
Q ss_pred cchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceecc-CCC-Ccc--cCC
Q psy9579 274 VEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTT-SPN-DLR--STL 349 (887)
Q Consensus 274 a~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST-~~~-~~r--ss~ 349 (887)
|.|.||+. + ..++++..|=|++..-.-++| |.. -++| +|+|+-+-.....- ... .+. ...
T Consensus 57 A~Gyar~t--------g-~~v~~~TsGpG~~N~~~gia~----A~~--~~vP-ll~itg~~~~~~~~~~~~~~~~~g~~~ 120 (568)
T 2wvg_A 57 AEGYARAK--------G-AAAAVVTYSVGALSAFDAIGG----AYA--ENLP-VILISGAPNNNDHAAGHVLHHALGKTD 120 (568)
T ss_dssp HHHHHHHH--------S-CEEEEECTTTTHHHHHHHHHH----HHH--TTCC-EEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred HHHHHHhh--------C-CeEEEEeCCCCHHHHHHHHHH----Hhh--hCCC-EEEEeCCCChhHhccCcceeeeccccc
Confidence 56666653 1 457777777776632233333 555 7899 99998765442211 000 000 001
Q ss_pred --cccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 350 --YCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 350 --~~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
+..++.+.+-.-.+.| .+|+.+...+..|+..+..+.|||.|++=
T Consensus 121 ~~d~~~~~~~~tk~~~~v--~~~~~~~~~l~~A~~~A~~~~GPV~l~iP 167 (568)
T 2wvg_A 121 YHYQLEMAKNITAAAEAI--YTPEEAPAKIDHVIKTALREKKPVYLEIA 167 (568)
T ss_dssp CCHHHHHHTTSCSCEEEE--CSGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hHHHHHHHHhhEeEEEEe--CCHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 1233333343444555 57777878888888888888899999984
No 62
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=37.80 E-value=39 Score=31.47 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=35.3
Q ss_pred cccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCC
Q psy9579 356 KIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGH 403 (887)
Q Consensus 356 k~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GH 403 (887)
.+-|+-.+...|||.+|.-.|.++-+..+|+|.|- +||-+.|.
T Consensus 80 sgsgvm~i~f~gddlea~ekalkemirqarkfagt-----vtytl~gn 122 (170)
T 4hhu_A 80 SGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGT-----VTYTLSGN 122 (170)
T ss_dssp TTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCE-----EEEEECSS
T ss_pred CCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcce-----EEEEEeCC
Confidence 34456678889999999999999999999999995 46666553
No 63
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=37.46 E-value=51 Score=38.09 Aligned_cols=94 Identities=4% Similarity=-0.036 Sum_probs=57.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
..++++..|=|++..-.-++|+. . -++| +|+|+-+-.....-....| ..+...+.+.+ .-..+.=.+|+
T Consensus 74 p~v~~~TsGpG~~N~~~~l~~A~----~--~~vP-ll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~--tk~~~~v~~~~ 142 (566)
T 1ozh_A 74 AGVALVTSGPGCSNLITGMATAN----S--EGDP-VVALGGAVKRADKAKQVHQ--SMDTVAMFSPV--TKYAIEVTAPD 142 (566)
T ss_dssp CEEEEECSTHHHHTTHHHHHHHH----H--HTCC-EEEEEEECCTTTC--------CCCHHHHHGGG--CSEEEECCSGG
T ss_pred CEEEEEccChHHHHHHHHHHHHH----h--cCCC-EEEEeCCCccccCCCCccc--ccCHHHHHHHH--hheEEEcCCHH
Confidence 67888888888885555555553 3 4679 9999776433211100001 11222233333 23344457888
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+...+..|+..+..++ |||.|++=
T Consensus 143 ~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 143 ALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 89999999999998885 99999874
No 64
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=35.89 E-value=40 Score=38.95 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=53.7
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceecc-CC--CCcc-cC--CcccccccccCCcEEEE
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTT-SP--NDLR-ST--LYCTDIGKIIEAPVFHV 365 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST-~~--~~~r-ss--~~~sd~Ak~~giP~~~V 365 (887)
..++++..|=|++..-.-+.| |.. -++| +|+|+-+-.....- .+ ...- .. .+..++.+.+-...+.|
T Consensus 66 ~~v~~~TsGpG~~N~~~gia~----A~~--~~vP-ll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v 138 (566)
T 2vbi_A 66 AAAAVVTFSVGAISAMNALGG----AYA--ENLP-VILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESI 138 (566)
T ss_dssp CEEEEECTTTTHHHHHHHHHH----HHH--TTCC-EEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEE
T ss_pred CeEEEEeCCCCHHHHHHHHHH----HHh--hCCC-EEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEe
Confidence 446666667776632233333 455 7899 99998765432210 00 0000 00 11233444444445555
Q ss_pred cCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 366 NGDDPESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 366 dG~D~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
.+|+.+...+..|+..+..++|||.|++=
T Consensus 139 --~~~~~~~~~l~~A~~~a~~~~GPV~l~iP 167 (566)
T 2vbi_A 139 --TDAHSAPAKIDHVIRTALRERKPAYLDIA 167 (566)
T ss_dssp --CSSSSHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 45556667777777777777899999984
No 65
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=35.64 E-value=56 Score=27.28 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=30.5
Q ss_pred EEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCC
Q psy9579 363 FHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGH 403 (887)
Q Consensus 363 ~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GH 403 (887)
++.-|+|.+|.-.|.++-+..+|+|.|- +||-+.|.
T Consensus 5 irfrgddleafekalkemirqarkfagt-----vtytldgn 40 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGT-----VTYTLDGN 40 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCE-----EEEEECSS
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcce-----EEEEecCC
Confidence 5677999999999999999999999995 56766653
No 66
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=35.07 E-value=79 Score=37.60 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=62.5
Q ss_pred cchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccc
Q psy9579 274 VEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTD 353 (887)
Q Consensus 274 a~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd 353 (887)
|.|.||+. + +..++++..|=|++..=.-++|+. . -++| +|+|+-+-....--.-..| ..+...
T Consensus 136 AdGyAr~t---G-----kpgvv~~TsGpG~~N~~~gia~A~----~--d~vP-llvItG~~~~~~~g~~a~Q--~~Dq~~ 198 (677)
T 1t9b_A 136 AEGYARAS---G-----KPGVVLVTSGPGATNVVTPMADAF----A--DGIP-MVVFTGQVPTSAIGTDAFQ--EADVVG 198 (677)
T ss_dssp HHHHHHHH---S-----SCEEEEECSTHHHHTTHHHHHHHH----H--HTCC-EEEEEEECCTTTTTSCCTT--CCCHHH
T ss_pred HHHHHHHH---C-----CCEEEEECCChHHHHHHHHHHHHH----H--cCCC-EEEEeCCCChhhcCCCCcc--ccCHHH
Confidence 56666553 2 267888888888885445555544 3 4789 9999765432111000000 011122
Q ss_pred cccccCCcEEEEcCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEE
Q psy9579 354 IGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKF-KKDCIINII 396 (887)
Q Consensus 354 ~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~-~~PvlIe~v 396 (887)
+.+.+-- ..+.=.|++.+..++..|+..+..+ .|||+|++=
T Consensus 199 i~~~~tk--~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 199 ISRSCTK--WNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HTGGGSS--EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred Hhhhhee--EEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 2222222 3344468899999999999999987 589999984
No 67
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=33.87 E-value=87 Score=35.98 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=55.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccC-CcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIE-APVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~g-iP~~~VdG~D~ 370 (887)
..++++..|=|++..-.-++|+ .. -++| +|+|.-+-....- . +....-.|....++ +--..+.=.+|
T Consensus 67 ~~v~~~TsGpG~~N~~~gi~~A----~~--~~vP-vl~itg~~~~~~~----~-~~~~Q~~d~~~~~~~~tk~~~~v~~~ 134 (549)
T 3eya_A 67 LAVCAGSCGPGNLHLINGLFDC----HR--NHVP-VLAIAAHIPSSEI----G-SGYFQETHPQELFRECSHYCELVSSP 134 (549)
T ss_dssp CEEEEECTTHHHHTTHHHHHHH----HH--TTCC-EEEEEEESCGGGT----T-SCCTTCCCHHHHTSTTCSEEEECCSG
T ss_pred CEEEEeCCCCcHhhhHHHHHHH----Hh--hCCC-EEEEeCCCchhhc----C-CCCCCccCHHHHHhhhhheEEEeCCH
Confidence 6788888888887444444444 34 6789 9999865322110 0 00000012222222 22344445678
Q ss_pred HHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
+.+...+..|+..+....|||.|++
T Consensus 135 ~~~~~~i~~A~~~A~~~~GPV~l~i 159 (549)
T 3eya_A 135 EQIPQVLAIAMRKAVLNRGVSVVVL 159 (549)
T ss_dssp GGHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 8888888999888888899999996
No 68
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=31.84 E-value=68 Score=32.78 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=48.0
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCC-CCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDS-YNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~-~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~ 370 (887)
..|+|++.|.|+. .+++--+...+ +..- ++.||.|+.=+ +.-++|+.+|+|+++++-.+.
T Consensus 9 ~ri~vl~SG~gsn------l~all~~~~~~~~~~~-I~~Vis~~~~a------------~~l~~A~~~gIp~~~~~~~~~ 69 (215)
T 3kcq_A 9 LRVGVLISGRGSN------LEALAKAFSTEESSVV-ISCVISNNAEA------------RGLLIAQSYGIPTFVVKRKPL 69 (215)
T ss_dssp EEEEEEESSCCHH------HHHHHHHTCCC-CSEE-EEEEEESCTTC------------THHHHHHHTTCCEEECCBTTB
T ss_pred CEEEEEEECCcHH------HHHHHHHHHcCCCCcE-EEEEEeCCcch------------HHHHHHHHcCCCEEEeCcccC
Confidence 5688888866555 55554444322 2333 66777765211 123688999999999875433
Q ss_pred HHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 371 ESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.. ...++..++.+-|++| +..|
T Consensus 70 ~~-----~~~~~~L~~~~~Dliv-lagy 91 (215)
T 3kcq_A 70 DI-----EHISTVLREHDVDLVC-LAGF 91 (215)
T ss_dssp CH-----HHHHHHHHHTTCSEEE-ESSC
T ss_pred Ch-----HHHHHHHHHhCCCEEE-EeCC
Confidence 11 3344556676766555 4445
No 69
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=31.72 E-value=91 Score=36.31 Aligned_cols=104 Identities=16% Similarity=0.036 Sum_probs=60.9
Q ss_pred cchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccc
Q psy9579 274 VEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTD 353 (887)
Q Consensus 274 a~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd 353 (887)
|.|.||+. + +..++++..|=|++..=.-++|+. . -++| +|+|.-+-.....-.-..| ..+..+
T Consensus 85 A~GyAr~t---g-----kpgv~~~TsGpG~~N~~~gia~A~----~--~~vP-lv~ItG~~~~~~~g~~~~Q--~~d~~~ 147 (604)
T 2x7j_A 85 ALGLAKAK---Q-----RPVLLICTSGTAAANFYPAVVEAH----Y--SRVP-IIVLTADRPHELREVGAPQ--AINQHF 147 (604)
T ss_dssp HHHHHHHH---T-----SCEEEEECSSHHHHTTHHHHHHHH----H--HTCC-EEEEEEECCGGGSSSCCTT--CCCCTT
T ss_pred HHHHHHhh---C-----CCEEEEECChhHHHHHHHHHHHHh----h--cCCC-EEEEeCCCCHHHhCCCCCC--cCcHHH
Confidence 55666543 2 267888888988885555555554 3 4679 9999876433211100001 112223
Q ss_pred cccccCCcEEEEcCCCHHH-------HHHHHHHHHHHHHcc-CCcEEEEEE
Q psy9579 354 IGKIIEAPVFHVNGDDPES-------VILVTKIAVEYRMKF-KKDCIINII 396 (887)
Q Consensus 354 ~Ak~~giP~~~VdG~D~~A-------V~~a~~~A~e~~r~~-~~PvlIe~v 396 (887)
+.+.+---.+.|. +|+. +...++.|+..+..+ .|||+|++=
T Consensus 148 ~~~~~tk~~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 148 LFGNFVKFFTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp TTGGGSSCEEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HhhhheeeeeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 3333333445553 3332 777888888888875 599999885
No 70
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=30.39 E-value=75 Score=36.64 Aligned_cols=95 Identities=5% Similarity=-0.054 Sum_probs=54.8
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
..++++..|=|++..-.-++| |.. -++| +|+|+-+-....-....+..-..+..++.+.+- -..+.=.+|+
T Consensus 73 pgv~~~TsGpG~~N~~~~i~~----A~~--~~vP-ll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~t--k~~~~v~~~~ 143 (568)
T 2c31_A 73 PGVCLTVSAPGFLNGVTSLAH----ATT--NCFP-MILLSGSSEREIVDLQQGDYEEMDQMNVARPHC--KASFRINSIK 143 (568)
T ss_dssp CEEEEECSHHHHHHHHHHHHH----HHH--HTCC-EEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGS--SEEEECCSGG
T ss_pred CEEEEEcCCccHHHHHHHHHH----HHh--cCCC-EEEEccCCCccccCCCCCcccccCHHHHHHhhh--heeeecCCHH
Confidence 578888787777733333333 334 6789 999987653321110000000011122233222 2334446888
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKF-KKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~-~~PvlIe~ 395 (887)
.+...+..|+..+..+ .|||.|++
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPV~l~i 168 (568)
T 2c31_A 144 DIPIGIARAVRTAVSGRPGGVYVDL 168 (568)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeC
Confidence 8889999999998885 58999987
No 71
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=30.37 E-value=74 Score=36.61 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=54.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
..++++..|=|++..-.-++|+ .. -++| +|+|+-+-....-..........+..++.+.+-. ..+.=.+|+
T Consensus 71 pgv~~~TsGpG~~N~~~gi~~A----~~--~~vP-ll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk--~~~~v~~~~ 141 (564)
T 2q28_A 71 PGICLTVSAPGFLNGLTALANA----TV--NGFP-MIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAK--AAFRVNQPQ 141 (564)
T ss_dssp CEEEEECSHHHHHHHHHHHHHH----HH--HTCC-EEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSS--EEEECCSGG
T ss_pred CEEEEEccCchHHHHHHHHHHH----Hh--cCCC-EEEEeCCCCccccCCCCCccccccHHHHHHHhhh--eeeecCCHH
Confidence 5688887877777333333443 34 5789 9999876543211100000000112223333333 333446788
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKF-KKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~-~~PvlIe~ 395 (887)
.+...+..|+..+..+ .|||.|++
T Consensus 142 ~~~~~i~~A~~~A~~~~~GPV~l~i 166 (564)
T 2q28_A 142 DLGIALARAIRVSVSGRPGGVYLDL 166 (564)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEc
Confidence 8888999999988885 49999987
No 72
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=30.17 E-value=61 Score=30.17 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEEeeecCCCC-----CCCCCCCCChHhhHHHhhCCCHHHHHHHH
Q psy9579 359 EAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHN-----EQDTPSLTQPLMYKKIFKHPGIRELYSNK 433 (887)
Q Consensus 359 giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~vtYR~~GHn-----e~DdP~~tqp~~Yr~i~~~~dpi~~y~~~ 433 (887)
|+-.+...|||.+|.-.|.++-+..+|+|.|-| ||-+.|.. ++- |..-|+. +..=+++
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtv-----tytl~gn~l~i~itgv------peqvrke------lakeaer 64 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV-----TYTLSGNRLVIVITGV------PEQVRKE------LAKEAER 64 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE-----EEEEETTEEEEEEESC------CHHHHHH------HHHHHHH
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceE-----EEEEeCCEEEEEEeCC------cHHHHHH------HHHHHHH
Confidence 344678899999999999999999999999964 55555432 111 3333331 1122333
Q ss_pred HHHc--------------CC----CCHHHHHHHHHHHHHHHHHHHHHhh
Q psy9579 434 LKIQ--------------KI----LTKNESENMIKEFNDMINSGKSIVN 464 (887)
Q Consensus 434 Li~~--------------Gi----~t~~e~~~i~~~~~~~l~~a~~~a~ 464 (887)
|.++ |+ +.-++++++++..++.+.+|-++|-
T Consensus 65 l~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfag 113 (170)
T 4hhu_A 65 LKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAG 113 (170)
T ss_dssp HHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcc
Confidence 4332 11 1236788888888888888776654
No 73
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=29.57 E-value=85 Score=36.25 Aligned_cols=106 Identities=14% Similarity=0.038 Sum_probs=57.5
Q ss_pred cchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceec-cCCC--CcccCCc
Q psy9579 274 VEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFT-TSPN--DLRSTLY 350 (887)
Q Consensus 274 a~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~S-T~~~--~~rss~~ 350 (887)
|.|.||+. + +..++++..|=|++..-.-++|+. . -++| +|+|+-+-..... +... .+-...+
T Consensus 75 A~GyAr~t---g-----kp~v~~~TsGpG~~N~~~gv~~A~----~--~~vP-ll~itg~~~~~~~~~~~~~~~~~q~~d 139 (565)
T 2nxw_A 75 ADAAARYS---S-----TLGVAAVTYGAGAFNMVNAVAGAY----A--EKSP-VVVISGAPGTTEGNAGLLLHHQGRTLD 139 (565)
T ss_dssp HHHHHHHH---T-----SCEEEEECTTHHHHTTHHHHHHHH----H--TTCC-EEEEEEECCTTCC--CCCC-------C
T ss_pred HHHHHHHh---C-----CCeEEEECCCCCHHHHHHHHHHHH----h--hCCC-EEEEeCCCChhhhccCcceeeeccchh
Confidence 55666543 2 266788887888774444444443 4 6789 9999876322110 0000 0000000
Q ss_pred -ccccccccCCcEEEEcCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q psy9579 351 -CTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINII 396 (887)
Q Consensus 351 -~sd~Ak~~giP~~~VdG~D~~AV~~a~~~A~e~~r~~~~PvlIe~v 396 (887)
..++.+.+-.....| .+|+.+...+..|+..+..+.|||.|++=
T Consensus 140 ~q~~~~~~~~k~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 184 (565)
T 2nxw_A 140 TQFQVFKEITVAQARL--DDPAKAPAEIARVLGAARAQSRPVYLEIP 184 (565)
T ss_dssp HHHHHHTTSCSCEEEC--CCTTTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hHHHHHHhhheEEEEe--CCHHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 122333333334444 46666666777777777666899999985
No 74
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=28.59 E-value=1.4e+02 Score=34.75 Aligned_cols=92 Identities=8% Similarity=-0.052 Sum_probs=50.7
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCcee-ccCCCCcccCCcccccccccCCcEEEEcCCCH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGF-TTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDP 370 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~-ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~ 370 (887)
-.++++..|=|++..-.-++|+. . -++| +|+|+-.-.... .+. ..| ..+..++.+.+ -...+.=.+|
T Consensus 76 ~gv~~~TsGpG~~N~~~gia~A~----~--~~vP-vl~itG~~~~~~~~~~-~~Q--~~d~~~~~~~~--tk~~~~v~~~ 143 (603)
T 4feg_A 76 IGVCFGSAGPGGTHLMNGLYDAR----E--DHVP-VLALIGQFGTTGMNMD-TFQ--EMNENPIYADV--ADYNVTAVNA 143 (603)
T ss_dssp CEEEEECTTHHHHTTHHHHHHHH----H--TTCC-EEEEEEECCTTTTTSC-CTT--CCCCGGGGTTT--CSEEEECCCS
T ss_pred ceEEEecCCchHHHHHHHHHHHH----H--cCCC-EEEEecCCcccccCCC-ccc--cccHHHHhhhh--ceEEEEcCCH
Confidence 67888888888874444444443 4 6789 999985422110 000 000 01112222222 2233333466
Q ss_pred HHHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 371 ESVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 371 ~AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
+.+...+..|+..+....|||+|++
T Consensus 144 ~~~~~~i~~A~~~A~~~~GPV~l~i 168 (603)
T 4feg_A 144 ATLPHVIDEAIRRAYAHQGVAVVQI 168 (603)
T ss_dssp TTHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 6666777777776666789999987
No 75
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=25.12 E-value=82 Score=30.81 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy9579 427 RELYSNKLKIQKILTKNESENMIKEFNDMINSG 459 (887)
Q Consensus 427 i~~y~~~Li~~Gi~t~~e~~~i~~~~~~~l~~a 459 (887)
+.-+++-|+++|++|++|+++..++++++....
T Consensus 113 L~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~ 145 (157)
T 2zzd_B 113 LLTAARILVDKQFVTLTELHNKIVEMRERVASG 145 (157)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcc
Confidence 456888899999999999999999888886643
No 76
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=23.77 E-value=1.6e+02 Score=34.54 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=61.2
Q ss_pred eEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEE-cCCCHH
Q psy9579 293 VLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPE 371 (887)
Q Consensus 293 ~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~ 371 (887)
.+.+..+++... ..+|.+-++++ .++| +++++.+-+++.... ..+...+.|++-.-.+|.+.| .=.|+.
T Consensus 381 ~~~~~~f~~Fl~----~a~dqi~~~a~--~~~~-v~~v~~~~g~~~G~d---G~tH~~~ed~a~l~~iP~l~V~~P~d~~ 450 (616)
T 3mos_A 381 VPFCSTFAAFFT----RAFDQIRMAAI--SESN-INLCGSHCGVSIGED---GPSQMALEDLAMFRSVPTSTVFYPSDGV 450 (616)
T ss_dssp EEEEEEEGGGGG----GGHHHHHHHHH--TTCC-EEEEEESBSGGGCTT---CGGGCBSSHHHHHHTSTTEEEECCCSHH
T ss_pred CEEEEehHHHHH----HHHHHHHHHHH--hCCC-eEEEEECCCccccCC---CCcccCHHHHHHhcCCCCCEEEecCCHH
Confidence 455667777653 77888888888 8899 998876555533321 112224567777778898765 668999
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINI 395 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~ 395 (887)
++..+.+.|++ .++|++|-+
T Consensus 451 e~~~~l~~a~~----~~gp~~ir~ 470 (616)
T 3mos_A 451 ATEKAVELAAN----TKGICFIRT 470 (616)
T ss_dssp HHHHHHHHHHT----CCSEEEEEC
T ss_pred HHHHHHHHHHh----cCCCEEEEE
Confidence 88888877775 368987743
No 77
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=22.95 E-value=93 Score=31.61 Aligned_cols=84 Identities=10% Similarity=0.076 Sum_probs=48.0
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCC-CCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCC--
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDS-YNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGD-- 368 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~-~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~-- 368 (887)
..++|++.|.|+. .+++--+...+ ...- ++.||.|+.=+ +.-++|+.+|+|+++++-.
T Consensus 8 ~ri~vl~SG~gsn------l~all~~~~~~~l~~~-I~~Visn~~~a------------~~l~~A~~~gIp~~~~~~~~~ 68 (209)
T 4ds3_A 8 NRVVIFISGGGSN------MEALIRAAQAPGFPAE-IVAVFSDKAEA------------GGLAKAEAAGIATQVFKRKDF 68 (209)
T ss_dssp EEEEEEESSCCHH------HHHHHHHHTSTTCSEE-EEEEEESCTTC------------THHHHHHHTTCCEEECCGGGS
T ss_pred ccEEEEEECCcHH------HHHHHHHHHcCCCCcE-EEEEEECCccc------------HHHHHHHHcCCCEEEeCcccc
Confidence 5688887755555 55555444322 2233 67777765211 1236899999999998743
Q ss_pred -CHHHHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 369 -DPESVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 369 -D~~AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
+.++-- ...++..++.+-|++| +.+|
T Consensus 69 ~~r~~~d---~~~~~~l~~~~~Dliv-~agy 95 (209)
T 4ds3_A 69 ASKEAHE---DAILAALDVLKPDIIC-LAGY 95 (209)
T ss_dssp SSHHHHH---HHHHHHHHHHCCSEEE-ESSC
T ss_pred CCHHHHH---HHHHHHHHhcCCCEEE-Eecc
Confidence 332221 2334556677767665 4444
No 78
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=21.62 E-value=2.4e+02 Score=32.58 Aligned_cols=120 Identities=13% Similarity=0.015 Sum_probs=76.8
Q ss_pred ceEEeccccchHHHHHHHHhhccCCCCCceEEeeeccccccchhHHHHHHHhhHHHHhcCccCcEEEe---cccCCCCCc
Q psy9579 605 KFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLTLML---PHGYEGQGP 681 (887)
Q Consensus 605 ~~~V~nspLsE~ailG~~~G~a~~~~~~l~i~E~qFgDF~~~Aq~~~Dq~i~~~~~kw~~~sglv~~l---P~G~~g~Gp 681 (887)
.++.+. ...|.+...++-|||....++ .++=...|= |+...+--+. ++ |....||+++. |....|+++
T Consensus 43 ~i~~i~-~~~E~~Aa~~A~GyAr~tgk~-~v~~~tsGp---G~~N~~~gl~---~A-~~~~vPll~Itg~~p~~~~g~~~ 113 (590)
T 1v5e_A 43 NVKFLQ-VKHEEVGAMAAVMQSKFGGNL-GVTVGSGGP---GASHLINGLY---DA-AMDNIPVVAILGSRPQRELNMDA 113 (590)
T ss_dssp CCEEEE-CSSHHHHHHHHHHHHHTTCCC-CEEEECTTH---HHHTTHHHHH---HH-HHHTCCEEEEEEECCGGGTTTTC
T ss_pred CCeEEe-eCCHHHHHHHHHHHHHHHCCC-EEEEeCcCh---HHHHHHHHHH---HH-HhcCCCEEEEcCCCCcccCCCCc
Confidence 356655 578999999999999976664 466678872 1111122221 22 33457888886 455567776
Q ss_pred cccCchHHHHHhhhcCCCcEEEcCCCHhHHHHHHHHHHh---CCCCCcEEEEcccccccc
Q psy9579 682 EHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQII---RPIRKPLIIITPKSLLRK 738 (887)
Q Consensus 682 eHSs~r~Er~lq~~~~~nl~V~~pstpa~~~hlLr~q~~---~~~r~Plv~~~pK~Llr~ 738 (887)
.+... ..+++.-+. -+ .+.+++|.++..+++++++ ..-+.||.+ -|+.+...
T Consensus 114 ~Q~~d-~~~~~~~~t--k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv~~~ 168 (590)
T 1v5e_A 114 FQELN-QNPMYDHIA--VY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDFAKV 168 (590)
T ss_dssp TTCCC-CHHHHHTTC--SE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTGGGC
T ss_pred ccccC-HHHHHHhhc--cE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccchhhc
Confidence 55433 344554332 34 6677899999999998876 222389999 99988643
No 79
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=20.93 E-value=1.2e+02 Score=31.05 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=49.0
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
..++|++-|. |...+++--+...|.+.- ++.||.|+. + .+.-++|+.+|||+++++-.+..
T Consensus 6 ~riavl~SG~------Gsnl~all~~~~~~~~~e-I~~Vis~~~--------~----a~~~~~A~~~gIp~~~~~~~~~~ 66 (215)
T 3tqr_A 6 LPIVVLISGN------GTNLQAIIGAIQKGLAIE-IRAVISNRA--------D----AYGLKRAQQADIPTHIIPHEEFP 66 (215)
T ss_dssp EEEEEEESSC------CHHHHHHHHHHHTTCSEE-EEEEEESCT--------T----CHHHHHHHHTTCCEEECCGGGSS
T ss_pred cEEEEEEeCC------cHHHHHHHHHHHcCCCCE-EEEEEeCCc--------c----hHHHHHHHHcCCCEEEeCccccC
Confidence 4577777654 555666665554442223 666666642 1 12246899999999998743321
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEEee
Q psy9579 372 SVILVTKIAVEYRMKFKKDCIINIICF 398 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~~PvlIe~vtY 398 (887)
.=..--...++..++.+-|++| +..|
T Consensus 67 ~r~~~d~~~~~~l~~~~~Dliv-~agy 92 (215)
T 3tqr_A 67 SRTDFESTLQKTIDHYDPKLIV-LAGF 92 (215)
T ss_dssp SHHHHHHHHHHHHHTTCCSEEE-ESSC
T ss_pred chhHhHHHHHHHHHhcCCCEEE-Eccc
Confidence 0000112345667787777665 4445
No 80
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=20.74 E-value=49 Score=24.97 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=16.2
Q ss_pred ccccChHHhHHHHHhhhcc
Q psy9579 115 MYINNLEEVEWIQEQLEST 133 (887)
Q Consensus 115 ~hi~~~~~~~Wl~~~~E~~ 133 (887)
.|+.+.+.+.||++++|.-
T Consensus 13 ~~~q~~~R~~WLq~~L~~v 31 (39)
T 1bwx_A 13 KHLNSMERVEWLRKKLQDV 31 (39)
T ss_dssp SSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3678899999999999864
No 81
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=20.71 E-value=2.2e+02 Score=33.02 Aligned_cols=94 Identities=10% Similarity=-0.042 Sum_probs=56.9
Q ss_pred ceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEEcCCCHH
Q psy9579 292 QVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPE 371 (887)
Q Consensus 292 ~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~VdG~D~~ 371 (887)
-.++++..|=|++..-.-++|+. . -++| +|+|+-+-.....-.-..| ..+...+.+.+---.+.| .+++
T Consensus 92 ~~v~~~TsGpG~~N~~~~l~~A~----~--~~vP-lvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~tk~~~~v--~~~~ 160 (616)
T 2pan_A 92 IGVCLGTSGPAGTDMITALYSAS----A--DSIP-ILCITGQAPRARLHKEDFQ--AVDIEAIAKPVSKMAVTV--REAA 160 (616)
T ss_dssp CEEEEECSTHHHHTSHHHHHHHH----H--TTCC-EEEEEEECCGGGTTTTCTT--CCCHHHHHGGGSSEEEEC--CSGG
T ss_pred ceEEEeCCCchHHHHHHHHHHHH----h--cCCC-EEEEecCCcccccCccccc--ccCHHHHHHHHHHhhccc--CCHH
Confidence 46777888888764444444443 3 4889 9999876543322111011 112223333333333444 6788
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 372 SVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 372 AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
.+-.+++.|+..+..+. |||.|++=
T Consensus 161 ~i~~~l~~A~~~A~~~r~GPV~l~iP 186 (616)
T 2pan_A 161 LVPRVLQQAFHLMRSGRPGPVLVDLP 186 (616)
T ss_dssp GHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcc
Confidence 89999999999888874 89999883
No 82
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=20.60 E-value=3.2e+02 Score=31.43 Aligned_cols=106 Identities=16% Similarity=0.066 Sum_probs=57.7
Q ss_pred cchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccc
Q psy9579 274 VEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTD 353 (887)
Q Consensus 274 a~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd 353 (887)
|.|.||+. + +..++++..|=|++..=.-++|+. . -++| +|+|.-+-....-- .+..-..+..+
T Consensus 65 AdGyAr~t---G-----~pgv~~~TsGpG~~N~~~gia~A~----~--d~vP-ll~itG~~p~~~~g--~~~~Qe~d~~~ 127 (578)
T 3lq1_A 65 ALGLAKAS---K-----RPVVLLCTSGTAAANYFPAVAEAN----L--SQIP-LIVLTADRPHELRN--VGAPQAMDQLH 127 (578)
T ss_dssp HHHHHHHH---C-----CCEEEEECSSHHHHTTHHHHHHHH----H--TTCC-EEEEEEECCGGGTT--SSCTTCCCCTT
T ss_pred HHHHHHhh---C-----CCEEEEECCchhhhhhhHHHHHHH----h--cCCC-eEEEeCCCCHHhhc--CCCCCCcCHhh
Confidence 55666553 2 267888888888884444444443 3 6789 99998643211100 00000011222
Q ss_pred cccccCCcEEEE-cCCCHHH----HHHHHHHHHHHHHcc-CCcEEEEEE
Q psy9579 354 IGKIIEAPVFHV-NGDDPES----VILVTKIAVEYRMKF-KKDCIINII 396 (887)
Q Consensus 354 ~Ak~~giP~~~V-dG~D~~A----V~~a~~~A~e~~r~~-~~PvlIe~v 396 (887)
+.+.+---...| +.++... +..+++.|+..+..+ .|||+|++=
T Consensus 128 ~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP 176 (578)
T 3lq1_A 128 LYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFP 176 (578)
T ss_dssp TTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECc
Confidence 222222233444 3445332 345788888888887 599999985
No 83
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=20.59 E-value=1.5e+02 Score=33.59 Aligned_cols=104 Identities=11% Similarity=0.024 Sum_probs=60.3
Q ss_pred cchhHHHHHhhccCCCCCceEEEEeecCcccccccHHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccc
Q psy9579 274 VEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTD 353 (887)
Q Consensus 274 a~G~A~A~q~~~~~~~~~~~v~i~~hGDgA~~gqG~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd 353 (887)
|.|.||+. + +..++++..|=|++..=.-++| |.. .++| +|+|+-+-....--.-..|. ..|
T Consensus 54 A~Gyar~t---g-----~~~v~~~tsGpG~~N~~~~l~~----A~~--~~~P-ll~itg~~~~~~~~~~~~q~----~~d 114 (528)
T 1q6z_A 54 ADGYAQAS---R-----KPAFINLHSAAGTGNAMGALSN----AWN--SHSP-LIVTAGQQTRAMIGVEALLT----NVD 114 (528)
T ss_dssp HHHHHHHH---T-----SCEEEEEEHHHHHHHTHHHHHH----HHH--TTCC-EEEEEEECCHHHHTTTCTTC----CTT
T ss_pred HHHHHHHh---C-----CCEEEEEcCChHHHHHHHHHHH----Hhh--cCCC-EEEEeCCCcccccCCCcccc----ccc
Confidence 55666553 2 2667777778887733333333 455 7899 99997764332111100010 012
Q ss_pred cccccC-CcEEEEcCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q psy9579 354 IGKIIE-APVFHVNGDDPESVILVTKIAVEYRMKFK-KDCIINII 396 (887)
Q Consensus 354 ~Ak~~g-iP~~~VdG~D~~AV~~a~~~A~e~~r~~~-~PvlIe~v 396 (887)
....++ +--..+.=.+|+.+...+..|+..+..++ |||.|++=
T Consensus 115 ~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 115 AANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp GGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 222221 22234445678888888999999888876 69999974
No 84
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=20.36 E-value=1.4e+02 Score=35.42 Aligned_cols=78 Identities=8% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHHHhccCCCCCCCEEEEEEeCCceeccCCCCcccCCcccccccccCCcEEEE-cCCCHHHHHHHHHHHHHHHHcc
Q psy9579 309 VVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPESVILVTKIAVEYRMKF 387 (887)
Q Consensus 309 ~v~EaLN~A~l~~~~lpGvIfiv~NNq~g~ST~~~~~rss~~~sd~Ak~~giP~~~V-dG~D~~AV~~a~~~A~e~~r~~ 387 (887)
-.++++.++++ .++| +++++.+..+|...+ ..+-..+.|++..-.+|.+.| -=-|+.++..+.+.|++..
T Consensus 435 ~~~~air~~a~--~~lp-vv~~~t~~g~g~G~d---G~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~--- 505 (651)
T 2e6k_A 435 YMRPAIRLAAL--MGVP-TVFVFTHDSIALGED---GPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRK--- 505 (651)
T ss_dssp GSHHHHHHHHH--HTCC-CEEEEECCSGGGCTT---CTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHh--cCCC-EEEEEECCccccCCC---cCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcC---
Confidence 35677888999 9999 999999988875422 111134677777777887654 6789999999999998643
Q ss_pred CCcEEEEE
Q psy9579 388 KKDCIINI 395 (887)
Q Consensus 388 ~~PvlIe~ 395 (887)
++|++|-+
T Consensus 506 ~~Pv~i~~ 513 (651)
T 2e6k_A 506 EGPTALVL 513 (651)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEEE
Confidence 57998854
Done!