RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9579
(887 letters)
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 1482 bits (3839), Expect = 0.0
Identities = 492/877 (56%), Positives = 649/877 (74%), Gaps = 20/877 (2%)
Query: 13 FKNLNKEKINILENNKK-FKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYD 71
F+ L K + K++ LI+ YR G ANLDPL K ++ +L+ FY
Sbjct: 63 FRRLAKPARVSSAVSDPQVKVLQLINAYRFRGHLAANLDPLG-LWKRPDVP-ELDPAFYG 120
Query: 72 FNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLE 131
E+D+D N ++ G + TLR +++ LK TY +IG E+M+I++ EE W+Q+++E
Sbjct: 121 LTEADLDRTFNTGSLALGKETATLREIIEALKKTYCGSIGVEYMHISDPEERRWLQQRIE 180
Query: 132 STQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSG 191
S + +FS E+KK IL LTAAE FE +LH ++VGQKRFSLEG ES I L+EII+ +G
Sbjct: 181 SGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAG 238
Query: 192 KRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKN--SENLLSGDVKYHQGFSSNI 249
K G++EIVIGMAHRGRLNVLVN+LGK P++LF EFE K+ E L SGDVKYH GFSS+
Sbjct: 239 KLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDR 298
Query: 250 NTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFG-TQVLPVLVHGDAAFSGQG 308
T GG +HLSLAFNPSHLEI+NPVVEGS +AR +RR D +VLP+L+HGDAAF+GQG
Sbjct: 299 ETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQG 358
Query: 309 VVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGD 368
VV ETLN S++ Y TGGTIHI+INNQIGFTTSP D RST YCTD+ K+++AP+FHVNGD
Sbjct: 359 VVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGD 418
Query: 369 DPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRE 428
DPE+V+ T++A+EYR KFKKD +I+++C+R+ GHNE D PS TQPLMYKKI KHP RE
Sbjct: 419 DPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRE 478
Query: 429 LYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYI 488
LY++KL + ++T+ E++ M+ E+ D +++G +V D +W+P+L + +
Sbjct: 479 LYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA---DWLAGDWSPYLGHEWD 535
Query: 489 DNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYA 548
D +T + LE+LK L++K+T +P+GFK+H VKKIL+DR EM G+ +DWGMAE LA+A
Sbjct: 536 DPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFA 595
Query: 549 SLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHI 608
SL+ GY VRLSGQDSGRGTFSHRHA+L++Q +T TYIPL+++S+ QA F +
Sbjct: 596 SLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQ-------KTG-ETYIPLNHLSEGQASFEV 647
Query: 609 INSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGL 668
+S LSEEA+LGFEYG+STA PNTL IWEAQFGDFANGAQV+IDQFISS E+KWGR+SGL
Sbjct: 648 YDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGL 707
Query: 669 TLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLI 728
++LPHGYEGQGPEHSSARLERFLQLCA +N+Q+ PT+ +Q FHLLR Q +RP RKPL+
Sbjct: 708 VMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLV 767
Query: 729 IITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNFRK 788
++TPKSLLR A S+L +LA G F +I +ID+ +DPKK+KR++ CSGK+YYDL R+
Sbjct: 768 VMTPKSLLRHPLAVSSLEELAEGSFQPVIGDIDE-LDPKKVKRVVLCSGKVYYDLLEARR 826
Query: 789 KKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILKYL 848
K+ +DV I+RIEQLYPFP+E+ L K+ ++++W Q+EPKNQGAW I+ ++ + L
Sbjct: 827 KRGIDDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVL 886
Query: 849 NSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
QKL Y GR SASPA GY S H K+Q L+ +A
Sbjct: 887 PEGQKLRYAGRPASASPAVGYMSLHKKQQEALVEDAL 923
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 1291 bits (3342), Expect = 0.0
Identities = 469/879 (53%), Positives = 633/879 (72%), Gaps = 21/879 (2%)
Query: 8 NTPINFKNLNKEKINILENNKKF-KLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLN 66
+F+ L K K N + K K++ LI+ YR G ANLDPL K + +L+
Sbjct: 46 PVRESFRRLAK-KGNDPDATLKSVKVLRLINAYRSRGHLHANLDPLGLKRPDVP---ELD 101
Query: 67 IKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWI 126
+F+ E+D+D N+ + F G + TLR L++ LK TY +IG E+M+I++ EE W+
Sbjct: 102 PEFHGLTEADLDETFNIGDGFLGKETMTLRELIEILKKTYCGSIGVEYMHISDPEEKRWL 161
Query: 127 QEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEI 186
QE++ES + P F+ E+KK IL LTAAE FE +LH ++ G KRFSLEG ES I L+E+
Sbjct: 162 QERIESGK--PTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGESLIPMLDEL 219
Query: 187 IQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYHQGFS 246
I +GK+G++E+VIGMAHRGRLNVLVN+LGK +++FDEFE K++E LSGDVKYH GFS
Sbjct: 220 IDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFS 279
Query: 247 SNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSG 306
S+ T GG +HLSLAFNPSHLEI+NPVVEGS +A+ +R D +VLP+L+HGDAAF+G
Sbjct: 280 SDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAG 339
Query: 307 QGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVN 366
QGVV ETLN S++D Y+ GGT HI+INNQIGFTTSP D RST YCTD+ K+IEAP+FHVN
Sbjct: 340 QGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVN 399
Query: 367 GDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGI 426
DDPE+V+ +A+EYR FKKD +I+++C+R+ GHNE D PS+TQPLMY+KI KHP +
Sbjct: 400 ADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTV 459
Query: 427 RELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNG 486
R+LY++KL + ++++ E++ ++ ++ D ++ G + D + +W+ +L G
Sbjct: 460 RKLYADKLIAEGVISEEEADELVNDYRDALDQGF---EVVKEYKEMDWLEGDWSGYLNAG 516
Query: 487 YIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLA 546
+ + +T + + LK L KK+ IP+GF++H VKKIL+DR M G +DWGMAE LA
Sbjct: 517 -LRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLA 575
Query: 547 YASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQAKF 606
+A+L+ G+ +RLSGQDSGRGTFSHRHA+L++Q TYIPL+++SK Q KF
Sbjct: 576 FATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQK--------TGETYIPLNHLSKGQGKF 627
Query: 607 HIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRIS 666
+INS LSEEA+LGFEYG+S A+P TL +WEAQFGDFANGAQV+IDQFISS E+KWGR+S
Sbjct: 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMS 687
Query: 667 GLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKP 726
GL ++LPHGYEGQGPEHSSARLERFLQLCA NN+Q+V P++ +Q FHLLR Q +R RKP
Sbjct: 688 GLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKP 747
Query: 727 LIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNF 786
LI++TPKSLLR K A S+L +L G F ++ +ID++ K+KR++ CSGK+YYDL
Sbjct: 748 LIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDP--KVKRVVLCSGKVYYDLLEQ 805
Query: 787 RKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILK 846
R+K ++DV I+RIEQLYPFP + +L K+ ++ +W Q+EPKNQGAW I+ ++ +
Sbjct: 806 REKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEE 865
Query: 847 YLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
L KL Y GR SASPA G S H K+Q LL +A
Sbjct: 866 VLPEGDKLRYAGRPASASPAVGSMSVHQKQQEKLLEDAL 904
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 1048 bits (2712), Expect = 0.0
Identities = 392/881 (44%), Positives = 553/881 (62%), Gaps = 60/881 (6%)
Query: 27 NKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYK------LNIKFYDFNESDMDSV 80
+K +++ LI YR G A+ DPL EY+ L++ + D+D
Sbjct: 384 DKNARVMELIHAYRVRGHLMADTDPL---------EYRQRSHPDLDVLTHGLTLWDLDRE 434
Query: 81 INVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFS 140
V F G ++ LR++L L+++Y +G E+M+I + E+ W+QE++E P +
Sbjct: 435 FPVGG-FGGKERMKLRDILGVLRDSYCRTVGIEYMHIQDPEQRRWLQERVERPHEKP--T 491
Query: 141 KEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVI 200
+E++K IL L AAE FE +L +YVGQKRFSLEG ES I L+ ++ + + G+ E+VI
Sbjct: 492 REEQKRILSKLNAAEAFETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVI 551
Query: 201 GMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLL------SGDVKYHQGFSSNINTP-G 253
GMAHRGRLNVL NI+GK ++F EFE NL SGDVKYH G G
Sbjct: 552 GMAHRGRLNVLANIVGKPYSQIFREFEG----NLDPRSAQGSGDVKYHLGAEGTFTQMFG 607
Query: 254 GVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDK-FGTQVLPVLVHGDAAFSGQGVVME 312
I +SLA NPSHLE ++PV+EG +A+ +R D G VLP+L+HGDAAF+GQGVV E
Sbjct: 608 DEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAE 667
Query: 313 TLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPES 372
TLN S++ Y TGGTIHI++NNQ+GFTT+P RS+ Y TD+ K+I+AP+FHVNGDDPE+
Sbjct: 668 TLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEA 727
Query: 373 VILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSN 432
V+ V ++A EYR +F KD +I+++C+R+ GHNE D PS+TQPLMY I +R+LY+
Sbjct: 728 VVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTE 787
Query: 433 KLKIQKILTKNESENMIKE--------FNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLK 484
L + +T E+E +++ FN++ + K S +S +
Sbjct: 788 ALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPES----VESDQGPPAGVD 843
Query: 485 NGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEH 544
T++S E L+ + N+P+GF +H +K +L+ R EM + +DW E
Sbjct: 844 --------TAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREM-AREGGIDWAFGEL 894
Query: 545 LAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQA 604
LA+ SL++ G VRLSGQDS RGTFS RHA+L ++ ET Y PL N+S +Q
Sbjct: 895 LAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDR-------ETG-EEYTPLQNLSDDQG 946
Query: 605 KFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGR 664
KF + +S+LSE A +GFEYG+S P+ L +WEAQFGDFANGAQ IID+FISS E KWG+
Sbjct: 947 KFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQ 1006
Query: 665 ISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIR 724
SG+ L+LPHGYEGQGP+HSSAR+ERFLQLCA N+ + QP++ + FHLLR Q + R
Sbjct: 1007 RSGVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGPR 1066
Query: 725 KPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLF 784
+PL++ TPKS+LR K A S + D GKF +I++ + D K++R++ CSGK+YYDL
Sbjct: 1067 RPLVVFTPKSMLRLKAAVSDVEDFTEGKFRPVIDD-PTVDDGAKVRRVLLCSGKLYYDLA 1125
Query: 785 NFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENI 844
R+K ++D I+R+EQLYP P + + L ++ +++W Q+EP NQGAWP + N+
Sbjct: 1126 ARREKDGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNL 1185
Query: 845 LKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
+ L ++L V R SASPA+G H EQ LL+ AF
Sbjct: 1186 PELLPDGRRLRRVSRPASASPATGSAKVHAVEQQELLDEAF 1226
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 1002 bits (2592), Expect = 0.0
Identities = 428/892 (47%), Positives = 606/892 (67%), Gaps = 32/892 (3%)
Query: 12 NFKNLNKEK-------INILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYK 64
F+ L K+ + N + K++ LI YR G ANLDPL K + E
Sbjct: 52 YFRRLAKDASRGSVTISDPDTNVSQVKVLQLIRAYRFRGHLHANLDPLGLKQQDKVPE-- 109
Query: 65 LNIKFYDFNESDMDSVINVNNIF---FGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLE 121
L++ FY E+D+ N+ + K + LL+ LK TY +IG+E+M+I + E
Sbjct: 110 LDLSFYGLTEADLQETFNIGSFVSGKDATMKLSNLELLQALKQTYCGSIGAEYMHITSTE 169
Query: 122 EVEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFIL 181
E W+Q+++ES + F+ E+KK L LTAAE FE +L ++ G KRFSLEG ++ +
Sbjct: 170 EKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVP 228
Query: 182 SLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLL--SGDV 239
L EII+HS G R++V+GMAHRGRLNVLVN+LGK P+++F EF K+ +L +GDV
Sbjct: 229 MLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDV 288
Query: 240 KYHQG-FSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDD-KFGTQVLPVL 297
KYH G FSS+ T G ++HL+LAFNPSHLEI++PVV GS +AR++R +D T+VL +L
Sbjct: 289 KYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAIL 348
Query: 298 VHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKI 357
+HGDAAF+GQGVV ETLN SK+ Y+ GGTIHIIINNQIGFTT+P D RST YC+D+ K+
Sbjct: 349 IHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKM 408
Query: 358 IEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMY 417
I+AP+FHVN DDPE+V T++AVEYR FK+D I+++ +R+ GHNE D PS TQPLMY
Sbjct: 409 IQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMY 468
Query: 418 KKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKS 477
+KI KHP R++Y++KL + + T+ + M+ + D + + +V PS + +
Sbjct: 469 QKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVV---PSWREMNTASF 525
Query: 478 EWAPFLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVE-MGCGKLN 536
W+P L + + + + +++L+ L+K+I+ +P+G ++H V KI DR + M G+
Sbjct: 526 TWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKL 585
Query: 537 VDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPL 596
DWG AE+LA+A+LV G VRLSG+DS RGTF RHA+L++Q + STY PL
Sbjct: 586 FDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQS--------NGSTYTPL 637
Query: 597 HNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFIS 656
++ Q F + NS+LSEE++LGFEYG++T SP TL IWEAQFGDFANGAQV+IDQFIS
Sbjct: 638 QHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFIS 697
Query: 657 SSEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLR 716
S E+KWG++SGL ++LPHGYEGQGPEHSS RLERFLQL A N+Q+ PT+ +Q+FH+LR
Sbjct: 698 SGEQKWGQMSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILR 757
Query: 717 YQIIRPIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDD---IIDPKKIKRII 773
Q +R +R+PL++++PKSLLR A S+L +LA G F +I EI++ +DP+ +KR++
Sbjct: 758 RQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLV 817
Query: 774 ACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKN 833
CSGK+YYDL R+K + DV I+RIEQLYPFP++ ++L+++ ++++W Q+EP N
Sbjct: 818 LCSGKVYYDLHEQRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLN 877
Query: 834 QGAWPQIKENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
GAW + ++ + + + Y GR SASPA GY S H K+Q LLN+A
Sbjct: 878 MGAWYYSQPHLREVIPEGVSVRYAGRPASASPAVGYMSLHQKQQQDLLNDAL 929
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 478 bits (1232), Expect = e-164
Identities = 158/265 (59%), Positives = 204/265 (76%), Gaps = 4/265 (1%)
Query: 157 FEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILG 216
FE +L ++ GQKRF LEG+ES I +L+E+I + + G+ E+VIGMAHRGRLNVL N+LG
Sbjct: 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLG 60
Query: 217 KKPKELFDEFEDKN--SENLL-SGDVKYHQGFSSNINTP-GGVIHLSLAFNPSHLEIINP 272
K +++F EFE K+ E+ SGDVKYH G+SS+ TP G +HLSLA NPSHLE +NP
Sbjct: 61 KPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNP 120
Query: 273 VVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIII 332
VV G +A+ + R D +VLP+L+HGDAAF+GQGVV ETLN S + Y TGGTIHI++
Sbjct: 121 VVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVV 180
Query: 333 NNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCI 392
NNQIGFTT P D RS+ YCTD+ K+I AP+FHVNGDDPE+V+ T++A+EYR KFKKD +
Sbjct: 181 NNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVV 240
Query: 393 INIICFRKLGHNEQDTPSLTQPLMY 417
I+++C+R+ GHNE D PS TQPLMY
Sbjct: 241 IDLVCYRRHGHNELDEPSFTQPLMY 265
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 171 bits (435), Expect = 4e-49
Identities = 50/204 (24%), Positives = 76/204 (37%), Gaps = 35/204 (17%)
Query: 537 VDWGMAEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPL 596
+ A A A L V G D GTF+ +L+
Sbjct: 3 IATRKASGEALAELAKRDPRVVGGGADVAGGTFTVTKGLLH------------------- 43
Query: 597 HNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFIS 656
Q +I++ ++E+A++G G + L EA FGDFAN D I
Sbjct: 44 -----PQGDGRVIDTGIAEQAMVGIANGMALHGL--LPPVEATFGDFAN----RADDAIR 92
Query: 657 SSEEKWGRISGLTLM-LPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLL 715
+ P G GP H S FL+ N+++V+P+ A++ LL
Sbjct: 93 HYAALGKLPVPFVVTRDPIGVGEDGPTHQSQEDLAFLRAIP--NLKVVRPSDAAETKGLL 150
Query: 716 RYQIIRPIRKPLIIITPKSLLRKK 739
R I P+++ P+ LLR K
Sbjct: 151 RAAIEDD--GPVVLRLPRQLLRHK 172
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 149 bits (377), Expect = 1e-39
Identities = 59/302 (19%), Positives = 104/302 (34%), Gaps = 23/302 (7%)
Query: 157 FEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILG 216
E Y + + +L I + G + VI +R N+L G
Sbjct: 9 MEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPG--DYVI-PTYRDHGNLLAR--G 63
Query: 217 KKPKELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEG 276
+++ E N G G+ + N + P+ G
Sbjct: 64 VSLEQVMAEL-TGNEAGCSKGKGGSMHGYYAPKNN-----RFYGGNGIVGAQ--VPLGAG 115
Query: 277 SAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQI 336
A A R G + + + + GD A + QG E LNF+ + I + NNQ
Sbjct: 116 IALAAKYR-----GKKEVAITLFGDGA-TNQGQFFEALNFAALWKLPV---IFVCENNQY 166
Query: 337 GFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINII 396
+T ++ D + P V+G DP +V K A E +I ++
Sbjct: 167 AISTPAERSSASTTYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELV 226
Query: 397 CFRKLGHNEQDTPSLTQ-PLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDM 455
+R GH+ D PS + +++ K + L + ++++ E + + KE
Sbjct: 227 TYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKE 286
Query: 456 IN 457
I
Sbjct: 287 IE 288
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 111 bits (279), Expect = 2e-28
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 609 INSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGL 668
I++ ++E+A++GF G + L F F + A+ I + G + +
Sbjct: 18 IDTGIAEQAMVGFAAGLALHG---LRPVVEIFFTFFDRAKDQIRSAGA-----SGNVPVV 69
Query: 669 TLMLPHGYEGQ-GPEHSSARLE-RFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKP 726
G G+ GP H S E + +++V P+ ++ LLR I
Sbjct: 70 FRHDGGGGVGEDGPTHHSIEDEALLRAIP---GLKVVAPSDPAEAKGLLRAAIRDD-GPV 125
Query: 727 LIIITPKSLLR 737
+I + KSL R
Sbjct: 126 VIRLERKSLYR 136
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 46.0 bits (110), Expect = 5e-05
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 23/167 (13%)
Query: 300 GDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIE 359
GD A + QG E+ N + + I +I NN T+ RS+ TD+ K E
Sbjct: 140 GDGA-ANQGQFYESFNMAALWKLPV---IFVIENNLYAMGTAVE--RSS-SVTDLYKRGE 192
Query: 360 A---PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLM 416
+ P V+G D +V K AVE K ++ + +R GH S++ P
Sbjct: 193 SFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGH------SMSDPAK 246
Query: 417 Y------KKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMIN 457
Y ++ K I +L +L Q I ++ E + + KE +
Sbjct: 247 YRSKEEVEEWRKRDPIEKL-KARLIEQGIASEEELKEIDKEVRAEVE 292
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 44.0 bits (105), Expect = 2e-04
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 300 GDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDI----- 354
GD A + +G E LNF+ + + I + NN +T T I
Sbjct: 134 GDGA-TNEGDFHEALNFAAL--WKLP-VIFVCENNGYAISTP---TSRQTAGTSIADRAA 186
Query: 355 GKIIEAPVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPS 410
I P V+G+D +V K AVE +I + +R GH+ D PS
Sbjct: 187 AYGI--PGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 42.2 bits (100), Expect = 8e-04
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 300 GDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIE 359
GD A + QG E LNF+ + + + +I NNQ + RS +I I
Sbjct: 167 GDGA-TNQGDFHEALNFAAV--WKLP-VVFVIENNQYAISVP----RSRQTAAEI---IA 215
Query: 360 A-------PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLT 412
A P V+G+D +V K AVE + +I + +R GH+ D PS
Sbjct: 216 ARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKY 275
Query: 413 QPLMYKKIFKH--PGIRELYSNKLKIQKILTKNESENMIKEFNDMIN 457
+ + +K P +R L IL++ E E + E ++
Sbjct: 276 RSKEEVEEWKKRDPIVR--LRKYLIEAGILSEEELEAIEAEAKAEVD 320
>gnl|CDD|218100 pfam04466, Terminase_3, Phage terminase large subunit. Initiation
of packaging of double-stranded viral DNA involves the
specific interaction of the prohead with viral DNA in a
process mediated by a phage-encoded terminase protein.
The terminase enzymes are usually hetero-oligomers
composed of a small and a large subunit. This region is
found on the large subunit and possess an endonuclease
and ATPase activity that require Mg2+ and a neutral or
slightly basic reaction. This region is also found in
bacterial sequences.
Length = 387
Score = 33.5 bits (77), Expect = 0.42
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 766 PKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRY--FEK 823
P +I I S ++Y + + K K+ DV IE+ F EDF +++ R
Sbjct: 71 PIEITVKINGSKFLFYGMDDPAKIKSIKDVSDAWIEEAAEFKTEDFDQLIPTIRRPKPGS 130
Query: 824 LIWAQDEPKNQGAW 837
I+ P N+ W
Sbjct: 131 EIFMSFNPVNKLNW 144
>gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated.
Length = 870
Score = 30.7 bits (70), Expect = 4.6
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 23 ILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVIN 82
IL N +FKL + + + + Q I K ++KF ++ + ++N
Sbjct: 491 ILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLNILNSLKNDLKFLSLSDFENLKILN 550
Query: 83 VNNIFFGVKKT---TLRNLLKFLKNTYTSNIGSEFMYINNL 120
+ K + +LR L L Y E + L
Sbjct: 551 EASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKL 591
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 30.5 bits (69), Expect = 5.1
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 677 EGQGPEHSSARLERFLQLCANNNIQIVQPT 706
G+ LE ++LC NNI IV
Sbjct: 69 TGEAERW----LEDAVRLCQENNILIVAAA 94
>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein;
Reviewed.
Length = 299
Score = 30.1 bits (68), Expect = 5.5
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 446 ENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTS 494
E++IK+ +++ G +V+ S + D ++E Y+D C TS
Sbjct: 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD-CGTS 121
>gnl|CDD|150663 pfam10015, DUF2258, Uncharacterized protein conserved in archaea
(DUF2258). Members of this family of hypothetical
bacterial archaeal have no known function. Structural
modelling suggests this domain may bind nucleic acids.
Length = 75
Score = 27.7 bits (62), Expect = 5.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 763 IIDPKKIKRIIACSGKIYYDLFNFRKKKNKNDVVIIRIE 801
+ PK+I R I+ K ++ K +K DVV I ++
Sbjct: 27 KVPPKEIVRAISELNKKLFEKLVEEMKIDKLDVVRISVD 65
>gnl|CDD|206339 pfam14171, SpoIISA_toxin, Toxin SpoIISA, type II toxin-antitoxin
system. SpoIISA is a toxin which causes lysis of
vegetatively growing cells. It forms part of a type II
toxin-antitoxin system, where the SpoIISB protein,
pfam14185, acts as an antitoxin. It is a transmembrane
protein, with a cytoplasmic domain accounting for
approximately two-thirds of the protein. The structure
of the cytoplasmic domain resembles that of the GAF
domains, Pfam: PF01590. SpoIISB binds to the cytoplasmic
domain of SpoIISA with high affinity.
Length = 240
Score = 29.6 bits (67), Expect = 7.0
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 420 IFKHPGIRELYSNKLK--IQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKS 477
IF P I++L SN+L+ +K L N + + + + + + ++ + P + Y SK
Sbjct: 80 IFLTPYIKKLGSNELETDTEKTLEANNE--TLHMYLNRLKNFQYLLKNEPIHVYYG-SKE 136
Query: 478 EWAPFLK---NGYIDNCNTSISL 497
+ LK Y D + S SL
Sbjct: 137 AYIEGLKELLALYADKMDISASL 159
>gnl|CDD|180855 PRK07132, PRK07132, DNA polymerase III subunit delta'; Validated.
Length = 299
Score = 29.7 bits (67), Expect = 7.3
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 31/159 (19%)
Query: 11 INFKNLNKEKI--NILENNKKFKLISLI----DNYRRLGVYFA--NLDPLKQKIKTINLE 62
N K +++KI +L NK+ + N+ + Y + + LK+ + +N
Sbjct: 144 FNVKEPDQQKILAKLLSKNKEKEYNWFYAYIFSNFEQAEKYINKESENLLKKFEEALNKS 203
Query: 63 YKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEF-------- 114
K + F ++ + N F +K LLKF + +N +
Sbjct: 204 LKEKYELILF----LNKKLTKENALFLLK------LLKFFFKSIFANKKKKNPKNIKVAF 253
Query: 115 -----MYINNLEEVEWIQEQLESTQATPNFSKEKKKNIL 148
I E + I E L S + NF+ +K+ ++
Sbjct: 254 SKKKKFKIEFFELITIIDEFLNSLETNENFNLQKQAFLV 292
>gnl|CDD|182126 PRK09871, PRK09871, tyrosine recombinase; Provisional.
Length = 198
Score = 29.2 bits (65), Expect = 7.7
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 557 VRLSGQDSGRGTFSHRHAILYNQDYQYSEKETD---ISTYIPLHNV-------SKNQAKF 606
+R +G ++G T +H H + + Y+ +E+ D I Y+ N+ + N A+F
Sbjct: 120 IRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARF 179
Query: 607 HII---NSILSEE 616
+ N++++E+
Sbjct: 180 AGLWERNNLINEK 192
>gnl|CDD|211677 TIGR01660, narH, nitrate reductase, beta subunit. The Nitrate
reductase enzyme complex allows bacteria to use nitrate
as an electron acceptor during anaerobic growth. The
enzyme complex consists of a tetramer that has an alpha,
beta and 2 gamma subunits. The alpha and beta subunits
have catalytic activity and the gamma subunits attach
the enzyme to the membrane and is a b-type cytochrome
that receives electrons from the quinone pool and
transfers them to the beta subunit. This model is
specific for the beta subunit for nitrate reductase I
(narH) and nitrate reductase II (narY) for gram positive
and gram negative bacteria.A few thermophiles and
archaea also match the model.The seed members used in
this model are all experimentally characterized and
include the following:SP:P11349, and SP:P19318, both
E.Coli (NarH and NarY respectively), SP:P42176 from B.
Subtilis, GP:11344602 from Psuedomonas
fluorescens,GP:541762 from Paracoccus denitrificans, and
GP:18413622 from Halomonas halodenitrificans. This model
also matches PFAM pfam00037 for 4Fe-4S binding domain
[Energy metabolism, Anaerobic].
Length = 492
Score = 29.5 bits (66), Expect = 8.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 103 KNTYTSNIGSEFMYINNLE 121
KN +TS G E+ + NN+E
Sbjct: 27 KNVWTSREGVEYAWFNNVE 45
>gnl|CDD|219795 pfam08324, PUL, PUL domain. The PUL (PLAP, Ufd3p and Lub1p) domain
is a novel alpha-helical Ub-associated domain. It
directly binds to Cdc48, a chaperone-like AAA ATPase
that collects ubiquitylated substrates.
Length = 263
Score = 29.3 bits (66), Expect = 9.5
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 47 ANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINV--NNIFFGVKKTTLRNLLKFLKN 104
ANLD + +K+K N + +K D + ++S+++ + + + LLK LK+
Sbjct: 14 ANLDKILKKLKEFNSKLSNELKLSDDELNAIESLLSELKESSTAALLEALTIYLLKILKS 73
Query: 105 TYTSNI 110
+N
Sbjct: 74 WPEANR 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,671,786
Number of extensions: 4656194
Number of successful extensions: 4785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4729
Number of HSP's successfully gapped: 102
Length of query: 887
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 781
Effective length of database: 6,236,078
Effective search space: 4870376918
Effective search space used: 4870376918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.8 bits)