RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9579
(887 letters)
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 1408 bits (3646), Expect = 0.0
Identities = 434/884 (49%), Positives = 609/884 (68%), Gaps = 17/884 (1%)
Query: 3 SMKYRNTPINFKNLNKEKINILENNKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLE 62
+R + + + N K+ K++ LI+ YR G ANLDPL + +
Sbjct: 63 REYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVAD 122
Query: 63 YKLNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEE 122
L+ F+D E+D NV + G + L LL+ LK TY IG+E+M+I + EE
Sbjct: 123 --LDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEE 180
Query: 123 VEWIQEQLESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILS 182
WIQ+++ES + F+ E+KK L LTAAE E YL ++ G KRFSLEG ++ I
Sbjct: 181 KRWIQQRIESGR--ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPM 238
Query: 183 LNEIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKELFDEFEDKNSENLLSGDVKYH 242
L E+I+H+G G RE+V+GMAHRGRLNVLVN+LGKKP++LFDEF K+ E+L +GDVKYH
Sbjct: 239 LKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYH 298
Query: 243 QGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDA 302
GFSS+ T GG++HL+LAFNPSHLEI++PVV GS +AR++R D+ +VLP+ +HGDA
Sbjct: 299 MGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDA 358
Query: 303 AFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTS-PNDLRSTLYCTDIGKIIEAP 361
A +GQGVV ETLN SK Y GGT+ I+INNQ+GFTTS P D RST YCTDIGK+++AP
Sbjct: 359 AVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAP 418
Query: 362 VFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIF 421
+FHVN DDPE+V VT++A+++R FK+D I+++C+R+ GHNE D PS TQPLMY+KI
Sbjct: 419 IFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIK 478
Query: 422 KHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAP 481
KHP R++Y++KL+ +K+ T ++ M+ + D +++G +V + W+P
Sbjct: 479 KHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPM---NMHSFTWSP 535
Query: 482 FLKNGYIDNCNTSISLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGM 541
+L + + + + +++L+ L+K+I+ +P+ ++ V KI DR M G+ DWG
Sbjct: 536 YLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGG 595
Query: 542 AEHLAYASLVISGYGVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSK 601
AE+LAYA+LV G VRLSG+DSGRGTF HRHA+++NQ + STY PL ++
Sbjct: 596 AENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQS--------NGSTYTPLQHIHN 647
Query: 602 NQAKFHIINSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEK 661
Q F + +S+LSEEA+L FEYG++TA P TLTIWEAQFGDFANGAQV+IDQFISS E+K
Sbjct: 648 GQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQK 707
Query: 662 WGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIR 721
WGR+ GL ++LPHGYEGQGPEHSSARLER+LQLCA N+Q+ P++ +Q++H+LR Q +R
Sbjct: 708 WGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALR 767
Query: 722 PIRKPLIIITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYY 781
+R+PL++++PKSLLR A S+L +LA G F I EID+ +DPK +KR++ CSGK+YY
Sbjct: 768 GMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDE-LDPKGVKRVVMCSGKVYY 826
Query: 782 DLFNFRKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIK 841
DL R+K N++DV I+RIEQLYPFP++ ++L++F + + +W Q+EP NQGAW +
Sbjct: 827 DLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQ 886
Query: 842 ENILKYLNSTQKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
+ + + L Y GR SASPA G+ S H K+Q L+N+A
Sbjct: 887 HHFREVIPFGASLRYAGRPASASPAVGHMSVHQKQQQDLVNDAL 930
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 1386 bits (3590), Expect = 0.0
Identities = 355/880 (40%), Positives = 520/880 (59%), Gaps = 39/880 (4%)
Query: 27 NKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNI 86
+K ++I LI YR G A++DPL+ L++ + D+D V+
Sbjct: 251 DKNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGLTLWDLDREFKVDG- 309
Query: 87 FFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKN 146
F GV++ LR++L L++ Y ++G E+ +I E+ WIQE++E+ + ++K
Sbjct: 310 FAGVQRKKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKY 367
Query: 147 ILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRG 206
IL L AAE FE +L +YVGQKRFSLEG+E+ I ++ +I + G+ E+VI M HRG
Sbjct: 368 ILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRG 427
Query: 207 RLNVLVNILGKKPKELFDEFEDKN--SENLLSGDVKYHQGFSSNINTPGG--VIHLSLAF 262
RLNVL NI+GK ++F EFE S+ SGDVKYH G + G I +SL
Sbjct: 428 RLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTA 487
Query: 263 NPSHLEIINPVVEGSAKARMERRD-----DKFGTQVLPVLVHGDAAFSGQGVVMETLNFS 317
NPSHLE ++PV+EG +A+ + D V+P+++HGDAAF+GQGVV ETLN +
Sbjct: 488 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLA 547
Query: 318 KIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVT 377
+ Y TGGTIHI++NNQIGFTT+P D RS+ YCTD+ K+I AP+FHVNGDDPE+ V
Sbjct: 548 LLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVA 607
Query: 378 KIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQ 437
++AV++R FKKD +I+++C+R+ GHNE D PS+TQP MY I G R+ Y+ L +
Sbjct: 608 RLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGR 667
Query: 438 KILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGY--IDNCNTSI 495
++ E+E+ ++++ + + V +K + E + ++ T++
Sbjct: 668 GDISMKEAEDALRDYQGQLERVFNEVRE------LEKHEIEPSESVEADQQIPSKLATAV 721
Query: 496 SLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGY 555
L+ + +P+GF +H V+ +L+ R EM +DW AE LA SL+ G
Sbjct: 722 DKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEG-RIDWAFAELLALGSLIAEGK 780
Query: 556 GVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQ------AKFHII 609
VRLSGQD+ RGTF+ RHA++ ++ + PL ++ N KF +
Sbjct: 781 LVRLSGQDTQRGTFTQRHAVIVDRK--------TGEEFTPLQLLATNPDGTPTGGKFLVY 832
Query: 610 NSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLT 669
NS LSE A +GFEYG+S +P+ + +WEAQFGDF NGAQ IID+FISS E KWG++S +
Sbjct: 833 NSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVV 892
Query: 670 LMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLII 729
L+LPHG+EGQGP+H+S R+ERFLQL A ++ I P++ + FHLLR I++PLI+
Sbjct: 893 LLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIV 952
Query: 730 ITPKSLLRKKEASSTLMDLATGKFNKIINEI---DDIIDPKKIKRIIACSGKIYYDLFNF 786
TPKS+LR K A S + D KF ++ E D D K+ R++ SGKIYY+L
Sbjct: 953 FTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAAR 1012
Query: 787 RKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILK 846
+ K+N+ DV I+RIEQL P P + L ++ ++ W Q+EP NQGAWP + +
Sbjct: 1013 KAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPE 1072
Query: 847 YLNST-QKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
L L + R ++P+SG H EQ +L+ AF
Sbjct: 1073 ILPDHFTGLKRISRRAMSAPSSGSSKVHAVEQQEILDTAF 1112
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 1374 bits (3558), Expect = 0.0
Identities = 355/880 (40%), Positives = 520/880 (59%), Gaps = 39/880 (4%)
Query: 27 NKKFKLISLIDNYRRLGVYFANLDPLKQKIKTINLEYKLNIKFYDFNESDMDSVINVNNI 86
+K ++I LI YR G A++DPL+ L++ + D+D V+
Sbjct: 6 DKNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHPDLDVNSHGLTLWDLDREFKVDG- 64
Query: 87 FFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKN 146
F GV++ LR++L L++ Y ++G E+ +I E+ WIQE++E+ + ++K
Sbjct: 65 FAGVQRKKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH--DKPTVAEQKY 122
Query: 147 ILFLLTAAEEFEHYLHNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREIVIGMAHRG 206
IL L AAE FE +L +YVGQKRFSLEG+E+ I ++ +I + G+ E+VI M HRG
Sbjct: 123 ILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRG 182
Query: 207 RLNVLVNILGKKPKELFDEFEDKN--SENLLSGDVKYHQGFSSNINTPGG--VIHLSLAF 262
RLNVL NI+GK ++F EFE S+ SGDVKYH G + G I +SL
Sbjct: 183 RLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTA 242
Query: 263 NPSHLEIINPVVEGSAKARMERRD-----DKFGTQVLPVLVHGDAAFSGQGVVMETLNFS 317
NPSHLE ++PV+EG +A+ + D V+P+++HGDAAF+GQGVV ETLN +
Sbjct: 243 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLA 302
Query: 318 KIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHVNGDDPESVILVT 377
+ Y TGGTIHI++NNQIGFTT+P D RS+ YCTD+ K+I AP+FHVNGDDPE+ V
Sbjct: 303 LLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVA 362
Query: 378 KIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQ 437
++AV++R FKKD +I+++C+R+ GHNE D PS+TQP MY I G R+ Y+ L +
Sbjct: 363 RLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGR 422
Query: 438 KILTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNG--YIDNCNTSI 495
++ E+E+ ++++ + + V +K + E + ++ T++
Sbjct: 423 GDISMKEAEDALRDYQGQLERVFNEVRE------LEKHEIEPSESVEADQQIPSKLATAV 476
Query: 496 SLEKLKFLSKKITNIPKGFKLHKLVKKILKDRVEMGCGKLNVDWGMAEHLAYASLVISGY 555
L+ + +P+GF +H V+ +L+ R EM +DW AE LA SL+ G
Sbjct: 477 DKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEG-RIDWAFAELLALGSLIAEGK 535
Query: 556 GVRLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQ------AKFHII 609
VRLSGQD+ RGTF+ RHA++ ++ + PL ++ N KF +
Sbjct: 536 LVRLSGQDTQRGTFTQRHAVIVDRK--------TGEEFTPLQLLATNPDGTPTGGKFLVY 587
Query: 610 NSILSEEAILGFEYGFSTASPNTLTIWEAQFGDFANGAQVIIDQFISSSEEKWGRISGLT 669
NS LSE A +GFEYG+S +P+ + +WEAQFGDF NGAQ IID+FISS E KWG++S +
Sbjct: 588 NSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVV 647
Query: 670 LMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLII 729
L+LPHG+EGQGP+H+S R+ERFLQL A ++ I P++ + FHLLR I++PLI+
Sbjct: 648 LLLPHGHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIV 707
Query: 730 ITPKSLLRKKEASSTLMDLATGKFNKIINEI---DDIIDPKKIKRIIACSGKIYYDLFNF 786
TPKS+LR K A S + D KF ++ E D D K+ R++ SGKIYY+L
Sbjct: 708 FTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAAR 767
Query: 787 RKKKNKNDVVIIRIEQLYPFPNEDFLKILKKFRYFEKLIWAQDEPKNQGAWPQIKENILK 846
+ K+N+ DV I+RIEQL P P + L ++ ++ W Q+EP NQGAWP + +
Sbjct: 768 KAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPE 827
Query: 847 YLNST-QKLIYVGRSCSASPASGYYSKHCKEQITLLNNAF 885
L L + R ++P+SG H EQ +L+ AF
Sbjct: 828 ILPDHFTGLKRISRRAMSAPSSGSSKVHAVEQQEILDTAF 867
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 86.4 bits (213), Expect = 2e-17
Identities = 80/560 (14%), Positives = 173/560 (30%), Gaps = 141/560 (25%)
Query: 403 HNEQDTPSLTQPLMYKKI---FKHPGIRELYSNKLK--IQKILTKNESENMIKE------ 451
H+ D + YK I F+ + ++ + IL+K E +++I
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 452 ----FNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEKLKFLSK-- 505
F +++ + +V F+ + + + FL + S+ ++ +
Sbjct: 64 TLRLFWTLLSKQEEMVQK----FVEEVLRINY-KFLMSPIKTEQRQP-SMMTRMYIEQRD 117
Query: 506 KITNIPKGF---------KLHKLVKKILKDRVE-------M-GCGKLNVDWGMAEHLAYA 548
++ N + F KL + +L+ R + G GK +A + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----TWVALDVCLS 173
Query: 549 SLVIS--GYGV---RLSGQDSGRGTFSHRHAILYNQDYQYSEKETDISTYIPLHNVSKNQ 603
V + + L +S +LY D ++ +D S+ I L +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLR---IHS 229
Query: 604 AKFHIINSILSEEAILGFEYGFSTASPNTLTI----WEAQ-FGDFANGAQVII---DQFI 655
+ + +L + Y N L + A+ + F ++++ + +
Sbjct: 230 IQAE-LRRLLKSK-----PY------ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 656 SS--SEEKWGRISGLTLMLPHGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQIFH 713
+ S IS L H P+ + L + Q + P
Sbjct: 278 TDFLSAATTTHIS-----LDHHSMTLTPDEV----KSLLLKYLDCRPQDL-PREVLTTN- 326
Query: 714 LLRYQIIRPIRKPLII-ITPKSLLRKKEASSTLMDLATGKFNKIINEIDDIIDPKKIKRI 772
P + I +S+ + K II ++++P + +
Sbjct: 327 ------------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-- 372
Query: 773 IACSGKIYYDLFNFRKKKNKNDVVI--IRIEQLYP-FPNEDFLKILKKFRYFEKLIWAQD 829
K++ L F I I + ++ D + ++ K + + +
Sbjct: 373 -----KMFDRLSVFPP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQ 420
Query: 830 EPKNQGAWPQI------KENILKYLNSTQKLI--------YVGRSCSASPASGY-YSK-- 872
++ + P I K L+ + ++ + Y YS
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 873 -HCK-----EQITLLNNAFL 886
H K E++TL FL
Sbjct: 479 HHLKNIEHPERMTLFRMVFL 498
Score = 67.2 bits (163), Expect = 2e-11
Identities = 92/638 (14%), Positives = 180/638 (28%), Gaps = 147/638 (23%)
Query: 158 EHYLHNR---YVGQKRFSLEGSESFIL-SLNEIIQHSGKRGIREIVIGMAHRGRLNVLVN 213
EH + V + F + I+ K I I++ L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSKDAVSGTLRLFW 69
Query: 214 ILGKKPKELFDEF----EDKNSENLLSGDVKYH----------QGFSSNINTPGGVIHLS 259
L K +E+ +F N + L+S + + + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMS---PIKTEQRQPSMMTRMYIEQRDRLYNDNQV- 125
Query: 260 LAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKI 319
F ++ + P ++ +A +E R K VL+ G V ++ K+
Sbjct: 126 --FAKYNVSRLQPYLK-LRQALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYKV 176
Query: 320 DSYNTGGTIHIIINNQIGFTTSPNDLRSTL--YCTDIGKIIEAPVFHVNGDDPESVILVT 377
I + + SP + L I P + D ++ L
Sbjct: 177 QCKMDFK-IFWL---NLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLRI 227
Query: 378 KIAVEY-RMKFK----KDCII--------------NIICFRKL--GHNEQDTPSLTQPLM 416
R K ++C++ N+ C + L +Q T L+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATT 286
Query: 417 YKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMINSG--KSIVNSIP------S 468
H LT +E ++++ ++ D + ++ + P +
Sbjct: 287 THISLDHH------------SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 469 NFIYDKSKSEWAPFLKNGYIDNCNTSI--SLEKLKFLSKKITNIPKGFK--LHKLVKKIL 524
I D + W + D T I SL L+ P ++ +L +
Sbjct: 335 ESIRDG-LATWDNWKHVNC-DKLTTIIESSLNVLE---------PAEYRKMFDRLS--VF 381
Query: 525 KDRVEMGCGKLNVDWG---------MAEHLAYASLV--------ISGYGV--RLSGQDSG 565
+ L++ W + L SLV IS + L +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 566 RGTFSHRHAI-LYNQDYQY-----SEKETD--ISTYIPLHNVSKNQA-KFHIINSILSEE 616
HR + YN + D ++I H + + + +
Sbjct: 442 EYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--- 497
Query: 617 AILGFEYGFSTAS-PNTLTIWEAQFGDFANGAQVII--DQFISSSEEKWGRISGLTLMLP 673
++ F + T W A G N Q + +I ++ K+ R+ L
Sbjct: 498 ----LDFRFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 674 HGYEGQGPEHSSARLERFLQLCANNNIQIVQPTSASQI 711
E L L++ + + + Q+
Sbjct: 553 PKIEENLICSKYTDL---LRIALMAEDEAIFEEAHKQV 587
Score = 55.2 bits (132), Expect = 9e-08
Identities = 74/456 (16%), Positives = 140/456 (30%), Gaps = 112/456 (24%)
Query: 84 NNIF---FGVKKTT------LRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQ 134
IF + L+ LL + +TS S+ N + IQ +L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSS-NIKLRIHSIQAELRRL- 237
Query: 135 ATPNFSKEKKKNILFLL------TAAEEFEHY----LHNRYVGQKRFSLEGSESFILSLN 184
+ +N L +L A F L R+ F L + + +SL+
Sbjct: 238 ----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLD 292
Query: 185 EIIQHSGKRGIREIVIGMAHRGRLNVLVNILGKKPKEL---------------------- 222
+ ++L+ L +P++L
Sbjct: 293 HHSM------------TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 223 ---FDEFEDKNS-----------ENLLSGDVK--YHQG--FSSNINTPGGVIHLSLAFNP 264
+D ++ N L + + + + F + + P + LSL +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFD 398
Query: 265 SHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNT 324
+ VV K + + K T +P + + + + L+ S +D YN
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLE--LKVKLENEYALHRSIVDHYN- 454
Query: 325 GGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDPESVILVTKIAVEY 383
I P L Y IG H+ N + PE + L + +++
Sbjct: 455 ------IPKTFDSDDLIPPYLDQYFYSH-IG-------HHLKNIEHPERMTLFRMVFLDF 500
Query: 384 RMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKK-IFKHPGIRELYSNKLKIQKILTK 442
R F + I + + +T L Q YK I + E N + L K
Sbjct: 501 R--FLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAIL--DFLPK 554
Query: 443 NESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSE 478
E + ++ D++ I I++++ +
Sbjct: 555 IEENLICSKYTDLLR----IALMAEDEAIFEEAHKQ 586
Score = 35.2 bits (80), Expect = 0.13
Identities = 37/255 (14%), Positives = 88/255 (34%), Gaps = 64/255 (25%)
Query: 6 YRNTPINFKNLNKEKIN-ILENN-KKFKLISLIDNYRRLGVYFANLD-PLK------QKI 56
T N+K++N +K+ I+E++ + + RL V+ + P +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 57 KTINLEYKLNIKFYDF---NESDMDSVINVNNIFFGVKKTTL------RNLL-------K 100
++ +N K + + + +S I++ +I+ +K R+++
Sbjct: 400 IKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 101 FLKNTYTSN---------IGSEFMYINNLEEVE----------WIQEQLESTQATPNFSK 141
F + IG I + E + ++++++ N S
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS- 517
Query: 142 EKKKNILFLLTAAEEFEHYL---HNRYVGQKRFSLEGSESFILSLNEIIQHSGKRGIREI 198
+IL L + ++ Y+ +Y +R + F+ + E + S + I
Sbjct: 518 ---GSILNTLQQLKFYKPYICDNDPKY---ERL-VNAILDFLPKIEENLICSKYTDLLRI 570
Query: 199 --------VIGMAHR 205
+ AH+
Sbjct: 571 ALMAEDEAIFEEAHK 585
Score = 33.7 bits (76), Expect = 0.30
Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 55/152 (36%)
Query: 4 MKYRNTPINFKNLNKEKINILENNKKFKLISL----IDNY-------------------- 39
++ + N L++ ++ K F L +D Y
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 40 -RRLGVYFANLDPLKQKIKTINLEYK---------LNIKFY-DF---NESDMDSVINVNN 85
R + F + L+QKI+ + + +KFY + N+ + ++N
Sbjct: 493 FRMV---FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--- 546
Query: 86 IFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYI 117
+L FL + I S++ +
Sbjct: 547 -----------AILDFLPKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 3e-12
Identities = 88/558 (15%), Positives = 151/558 (27%), Gaps = 215/558 (38%)
Query: 220 KELFDEFEDKNSENLLSGDVKYHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEG--S 277
EFE+ L G+ +I+ + L N + L +++ +
Sbjct: 85 NLCLTEFEN----CYLEGN---------DIHA---LAAKLLQENDTTLVKTKELIKNYIT 128
Query: 278 AKARMERRDDKFGTQVLPVLVH----GD----AAFSGQGVVMETLN-FSKI-DSYNT--G 325
A+ +R DK L G+ A F GQG + + +Y+ G
Sbjct: 129 ARIMAKRPFDKKSN---SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 326 GTIHIIINNQIGFTTSPNDLRSTLYCT--DIGKIIEAPVFHVNGDDPESVILVTKIAVEY 383
I + D ++ +I + +E P + P+ L++ I +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEK-VFTQGLNILEWLENP-----SNTPDKDYLLS-IPISC 238
Query: 384 RMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMY----KKIFKHPGIRELYSNKLKIQKI 439
+I + Q Y K + PG
Sbjct: 239 ----------PLIG-------------VIQLAHYVVTAKLLGFTPG-------------- 261
Query: 440 LTKNESENMIKEFNDMINSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYIDNCNTSISLEK 499
E + + + ++ S W F + +
Sbjct: 262 -----------ELRSYLKGATGHSQGLVTAVAIAETDS-WESFFVS----------VRKA 299
Query: 500 LKFLSKKITNIPKGFKLHK------LVKKILKDRVEMGCG-------------------- 533
+ L I G + ++ L IL+D +E G
Sbjct: 300 ITVLF-FI-----GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 534 -KLNVDWGMAEHLAYASL-------VISG-----YGVRL--------SGQDSGRGTFSHR 572
K N + + SL V+SG YG+ L SG D R FS R
Sbjct: 354 NKTNSHLPAGKQV-EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 573 HAILYNQDYQYSEKETDISTYIPLHNVSKNQAKFHIINSILSEEAILGFEYGFSTASPNT 632
N+ ++P V+ + FH S L A + N
Sbjct: 413 KLKFSNR-------------FLP---VA---SPFH---SHLLVPAS---DLINKDLVKNN 447
Query: 633 LTIWEAQFG----DFANGA----------QVIIDQFISSSEEKW---------------- 662
++ D +G+ + I+D I KW
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC-IIRLPVKWETTTQFKATHILDFGP 506
Query: 663 GRISGLTLMLPHGYEGQG 680
G SGL ++ +G G
Sbjct: 507 GGASGLGVLTHRNKDGTG 524
Score = 55.4 bits (133), Expect = 9e-08
Identities = 64/373 (17%), Positives = 113/373 (30%), Gaps = 140/373 (37%)
Query: 92 KTTLRNLLKF----LKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNI 147
+ +L+KF L + + +E ++ L +EW LE+ TP+
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----LENPSNTPDKD------- 229
Query: 148 LFLLTAA--------EEFEHYL-----HNRYVGQKRFSLEGS------------------ 176
+LL+ + HY+ G+ R L+G+
Sbjct: 230 -YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 177 -ESFILSLNEIIQ---HSGKRG--------IREIVIGMAHRGRLNV---LVNILGKKPKE 221
ESF +S+ + I G R + ++ + V +++I ++
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 222 LFDEFEDKNSENLLSGDVKYHQGFSSNINTP-------------GGVIHLSLAFNPSHLE 268
+ D NS L + S +N G + L A PS L+
Sbjct: 349 VQDYVNKTNSH--LPAGKQVE---ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 269 IINPVVEGSAKARMERRDDKFGTQVLPVLV--HGDAAFSGQGVVMETLNFSKIDSYNTGG 326
++ R KF + LPV H S
Sbjct: 404 --------QSRIPFSERKLKFSNRFLPVASPFH-----S---------------HLLVPA 435
Query: 327 TIHI---IINNQIGFTTSPNDLRSTLYCTDIGKIIEAPVFHV-NGDDP--ESVILVTKIA 380
+ I ++ N + F + D+ +I PV+ +G D S + +I
Sbjct: 436 SDLINKDLVKNNVSF--NAKDI----------QI---PVYDTFDGSDLRVLSGSISERIV 480
Query: 381 VEYRMKFKKDCII 393
DCII
Sbjct: 481 ---------DCII 484
Score = 42.0 bits (98), Expect = 0.001
Identities = 54/371 (14%), Positives = 109/371 (29%), Gaps = 136/371 (36%)
Query: 6 YRNTPINFKNLNKEKINILENNKKFKLISLI-DNYRRLGVYFANLDPLKQKIKTINLEYK 64
Y+ + +++ N ++ F ++ ++ +N L ++F +K K I Y
Sbjct: 1636 YKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG-----EKGKRIRENY- 1688
Query: 65 LNIKFYDFNESDMDSVINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVE 124
+ F E+ +D + IF + + + + + +
Sbjct: 1689 SAMIF----ETIVDGKLKTEKIFKEINEHS-----------------TSYTF-------R 1720
Query: 125 WIQEQLESTQAT-PNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQKR--F---SLEG--- 175
+ L +TQ T P L L+ A FE L ++ + F SL G
Sbjct: 1721 SEKGLLSATQFTQP---------ALTLMEKAA-FED-LKSKGLIPADATFAGHSL-GEYA 1768
Query: 176 ---SESFILSLNEIIQHSGKRGIREIVIGMAHRGRL-----------NVLVNILGKKPKE 221
S + ++S+ ++ E+V +RG ++ P
Sbjct: 1769 ALASLADVMSIESLV---------EVV---FYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 222 LFDEFEDKNSENLLSGDVKYHQGFSS--NINTPGGVIHLSLAFNPSHLEIINPVVEGSAK 279
+ F + + ++ K N N V G +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY----------------VAAGDLR 1860
Query: 280 ARMERRDDKFGTQVLPVLVHGDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFT 339
A L + LNF K+ I II ++ +
Sbjct: 1861 A-------------LDTVT-------------NVLNFIKLQK------IDII---ELQKS 1885
Query: 340 TSPNDLRSTLY 350
S ++ L+
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 31.2 bits (70), Expect = 1.9
Identities = 42/243 (17%), Positives = 71/243 (29%), Gaps = 77/243 (31%)
Query: 570 SHRHAILYNQDYQYSEKETDISTYIP--LH-NVSKNQAKFHIINSILSEEAILGFEYGFS 626
S R L + E + +P S+ Q +F+ IL E GF
Sbjct: 5 STRPLTL-----SHGSLEHVLL--VPTASFFIASQLQEQFN---KIL-PEPTEGFAADDE 53
Query: 627 TASPNTLTIWEAQF-------------GDFANGAQVIIDQFISSSEEK--WGR-ISGLTL 670
+P L +F G F + + +F E G I L
Sbjct: 54 PTTPAELV---GKFLGYVSSLVEPSKVGQFDQVLNLCLTEF----ENCYLEGNDIHALAA 106
Query: 671 MLPHGYEGQGPEHSSARLER-FLQLCANNNIQIVQPT-SA---------SQIFHL----- 714
L E + L + ++ + + SA +Q+ +
Sbjct: 107 KLLQ--ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 715 --------LR--YQIIRPIRKPLIIITPKSLLRKKEASSTLMDLA--TGKFNKIINEIDD 762
LR YQ + LI K ++ TL +L T K+ + +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLI----------KFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 763 IID 765
I++
Sbjct: 215 ILE 217
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 43.0 bits (102), Expect = 3e-04
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 300 GDAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIE 359
GD A + QG + E N + + + I I NN+ G TS R+ TD K +
Sbjct: 170 GDGA-ANQGQIFEAYNMAAL--WKLP-CIFICENNRYGMGTSVE--RAA-ASTDYYKRGD 222
Query: 360 A-PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQD 407
P V+G D V T+ A Y K ++ + +R GH D
Sbjct: 223 FIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD 271
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 31.6 bits (72), Expect = 0.37
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 794 DVVIIRIEQLYPFPNEDFLKILKKFRYF 821
++ ++ PFP E +L
Sbjct: 41 SANLLYLKMFSPFPTEFVKNVLSSANLV 68
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 31.3 bits (71), Expect = 0.54
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 80 VINVNNIFFGVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATP 137
I++N+ + + + + L S + ++ E V WIQ+ L + P
Sbjct: 74 GISINS--EQLTRAQCVTVKEKLLEQAESLLSEPMVH----ELVLWIQQNLRHILSQP 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.78
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 13/34 (38%)
Query: 53 KQKIKTINLEYKLNIKFYDFNESDMDS----VIN 82
KQ +K L+ L K Y +D DS I
Sbjct: 19 KQALKK--LQASL--KLY----AD-DSAPALAIK 43
Score = 30.7 bits (68), Expect = 1.0
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 841 KENILKYLNSTQKLIYVGRSCSASPA 866
K+ + K L ++ KL Y S +PA
Sbjct: 19 KQAL-KKLQASLKL-YADDS---APA 39
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.6
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 17/76 (22%)
Query: 121 EEVE----WIQEQ---LESTQATPNFSKEKKKNILFLLTAAEEFEHYLHNRYVGQ----K 169
+E E W +EQ L+ A K + A ++ E + + R Q K
Sbjct: 82 QEPESIRKWREEQRKRLQELDA-----ASKVMEQEWREKAKKDLEEW-NQRQSEQVEKNK 135
Query: 170 RFSLEGSESFILSLNE 185
+ ++F +
Sbjct: 136 INNRIADKAFYQQPDA 151
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid
starvation signal response, EIF2alpha kinase,
transferase; NMR {Saccharomyces cerevisiae}
Length = 138
Score = 30.0 bits (67), Expect = 1.6
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 89 GVKKTTLRNLLKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPN 138
V + L+ L K + ++ G E ++ E + QE+L+ Q N
Sbjct: 88 NVMDSQLQMLKSEFKKIHNTSRGQEIIF----EITSFTQEKLDEFQNVVN 133
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 30.6 bits (70), Expect = 2.1
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 794 DVVIIRIEQLYPFPNEDFLKILKKFRYF 821
+++IE ++PF E +I ++
Sbjct: 319 KAGLLKIETIWPFDFELIERIAERVDKL 346
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Length = 438
Score = 30.4 bits (69), Expect = 3.0
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 102 LKNTYTSNIGSEFMYINNLEEVEWIQEQLESTQATPNFSKEKKKNILFLLT 152
L+N Y NIG I +E +E + + E K + + T
Sbjct: 51 LENGY--NIGIALEKIRRIEVLERAKVKPEVHFEALIEGKPGLPEVTIIGT 99
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 29.3 bits (65), Expect = 4.5
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 75 SDMDSVINVNNIFFGVKKTTLRNL---LKFLKNTYTSNIGSEFMYINNLEEVEWIQEQLE 131
+ + + +IF V KTT L L +T+ S I + +I E +QE+L
Sbjct: 4 NPGPLELQLGDIFIAV-KTTWAFHRSRLDLLLDTWVSRI-RQQTFIFTDSPDERLQERLG 61
Query: 132 STQATPNFSKEKKKNILFLLTAAEEFEHYLHNR 164
S E L AAE +
Sbjct: 62 PHLVVTQCSAEHSHPALSCKMAAEFDAFLVSGL 94
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 29.3 bits (66), Expect = 5.4
Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 349 LYCTDIGKIIEAP-----VFHVNGDDPESVI-LVTKIAVEYRMKFKKDCIINIIC----- 397
C KIIE + + E V+ + +I +K+ D + II
Sbjct: 142 FACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD 201
Query: 398 FRKLGHNEQDTPSLTQPLMYKKIFKHPGIRELYSNKLKIQKILTKNESENMIKEF-NDMI 456
R+ +N Q T + + +FK + L ++K+L + E+ I+ D+
Sbjct: 202 MRQAINNLQSTVAGHGLVNADNVFKIVDS----PHPLIVKKMLLASNLEDSIQILRTDLW 257
Query: 457 NSGKSIVNSIPSNFIYDKSKSEWAPFLKNGYID 489
G S ++ + ++F K+ ++ ++ I
Sbjct: 258 KKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIK 290
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,512,521
Number of extensions: 848872
Number of successful extensions: 2423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2369
Number of HSP's successfully gapped: 40
Length of query: 887
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 785
Effective length of database: 3,853,851
Effective search space: 3025273035
Effective search space used: 3025273035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)