RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9579
         (887 letters)



>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Thermus thermophilus [TaxId:
           274]}
          Length = 362

 Score = 69.5 bits (169), Expect = 4e-13
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 241 YHQGFSSNINTPGGVIHLSLAFNPSHLEIINPVVEGSAKARMERRDDKFGTQVLPVLVHG 300
                +     P      +L F      I + V   +  A   +        V       
Sbjct: 113 TKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAV----CTF 168

Query: 301 DAAFSGQGVVMETLNFSKIDSYNTGGTIHIIINNQIGFTTSPNDLRSTLYCTDIGKIIEA 360
               + +G     +NF+ +        + I  NN    +        +    D       
Sbjct: 169 GDGATSEGDWYAGINFAAVQGAPA---VFIAENNFYAISVDYRHQTHSPTIADKAHAFGI 225

Query: 361 PVFHVNGDDPESVILVTKIAVEYRMKFKKDCIINIICFRKLGHNEQDTPSLTQPLMYKKI 420
           P + V+G D  +   V K AVE   + +   ++ +  +R   H+  D  S  +P      
Sbjct: 226 PGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAF 285

Query: 421 FKHPGIRELYSNKLKIQKILTKNESENMIKEFNDMIN 457
           ++       +   L+ + +  +   E++ +E    + 
Sbjct: 286 WRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELE 322


>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
           303]}
          Length = 155

 Score = 27.9 bits (61), Expect = 3.4
 Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 2/103 (1%)

Query: 686 ARLERFLQLCANNNIQIVQPTSASQIFHLLRYQIIRPIRKPLIIITPKS--LLRKKEASS 743
            R  R     A  NI     TS   I +   +      R   +++T      +       
Sbjct: 25  NRQARLRAHLAAENIDAAIFTSYHNINYYSDFLYCSFGRPYALVVTEDDVISISANIDGG 84

Query: 744 TLMDLATGKFNKIINEIDDIIDPKKIKRIIACSGKIYYDLFNF 786
                  G  N +  +         I++ +  + +I  +  + 
Sbjct: 85  QPWRRTVGTDNIVYTDWQRDNYFAAIQQALPKARRIGIEHDHL 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,379,614
Number of extensions: 170050
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 21
Length of query: 887
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 794
Effective length of database: 1,130,706
Effective search space: 897780564
Effective search space used: 897780564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)