BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy958
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CI1|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With S-Nitroso-
Lhomocysteine
Length = 276
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKV 97
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V
Sbjct: 109 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPV 161
>pdb|3P8P|A Chain A, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound
With N5-(1-Iminopentyl)-L-Ornithine
pdb|3P8P|B Chain B, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound
With N5-(1-Iminopentyl)-L-Ornithine
Length = 308
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKVKN 99
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V +
Sbjct: 139 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD 193
>pdb|3I2E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I2E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I4A|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3I4A|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3P8E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
pdb|3P8E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
Length = 308
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKVKN 99
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V +
Sbjct: 139 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD 193
>pdb|2JAJ|A Chain A, Ddah1 Complexed With L-257
pdb|2JAJ|B Chain B, Ddah1 Complexed With L-257
Length = 289
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKVKN 99
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V +
Sbjct: 120 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD 174
>pdb|2C6Z|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Citrulline
pdb|2CI3|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase Crystal Form I
pdb|2CI4|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Crystal Form Ii
pdb|2CI5|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI5|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI6|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Bound With Zinc Low Ph
pdb|2CI7|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Zinc, High Ph
Length = 284
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKV 97
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V
Sbjct: 115 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPV 167
>pdb|2JAI|A Chain A, Ddah1 Complexed With Citrulline
pdb|2JAI|B Chain B, Ddah1 Complexed With Citrulline
Length = 289
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 6/55 (10%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKVKN 99
+++ +DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V +
Sbjct: 120 IVEXKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD 174
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 63 GSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTG 111
G DVL + I+KW GA V D F P I K + K K + S G
Sbjct: 297 GVDVLSSDIAKWAMSFGAEVVLD-FSVPPTHLIAAKIRTEKVKKAVSMG 344
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 63 GSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTG 111
G DVL + I+KW GA V D F P I K + K K + S G
Sbjct: 367 GVDVLSSDIAKWAMSFGAEVVLD-FSVPPTHLIAAKIRTEKVKKAVSMG 414
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 34 YVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGI 71
+ DT+ A +L P Q ++++ A++ DV FTGI
Sbjct: 287 FTDTLTAGFTHQLTPAQTIEVQPHAARV--GDVWFTGI 322
>pdb|2OMD|A Chain A, Crystal Structure Of Molybdopterin Converting Factor
Subunit 2 (Aq_2181) From Aquifex Aeolicus Vf5
pdb|2OMD|B Chain B, Crystal Structure Of Molybdopterin Converting Factor
Subunit 2 (Aq_2181) From Aquifex Aeolicus Vf5
Length = 154
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 63 GSDVLFTGISKWTNEKGARAVADSFPEYPCTAIK 96
G+ VLF GI + E G A + YP AIK
Sbjct: 32 GAQVLFLGIPRNAPEDGGNIEALEYEAYPEMAIK 65
>pdb|4GWP|G Chain G, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|G Chain G, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 295
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 32 FIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGI 71
F YVD R I + P + +E+E KLDG++ + + +
Sbjct: 83 FAYVDPARRQIL--FKYPMYMQLEEELMKLDGTEYVLSSV 120
>pdb|2R17|C Chain C, Functional Architecture Of The Retromer
Cargo-Recognition Complex
pdb|2R17|D Chain D, Functional Architecture Of The Retromer
Cargo-Recognition Complex
Length = 298
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 7 LGTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKEL 46
L RY + + DD + +KC K +F + T+ A+IK EL
Sbjct: 57 LAFRYKENSKVDDKWEKKCQKIF-SFAH-QTISALIKAEL 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,077,459
Number of Sequences: 62578
Number of extensions: 155429
Number of successful extensions: 349
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 12
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)