BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy958
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95865|DDAH2_HUMAN N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Homo sapiens
GN=DDAH2 PE=1 SV=1
Length = 285
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 35 VDTVR-AIIKKELRPPQVLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSF 87
VD VR A+ LR +++I DE A LDG+DVLFTG +SKWTN +GA VAD+F
Sbjct: 100 VDGVRKALQDLGLR---IVEIGDENATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTF 156
Query: 88 PEYPCTAIKVKNKN 101
++ + + V +
Sbjct: 157 RDFAVSTVPVSGPS 170
>sp|Q6MG60|DDAH2_RAT N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Rattus
norvegicus GN=Ddah2 PE=1 SV=1
Length = 285
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 35 VDTVR-AIIKKELRPPQVLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSF 87
VD VR A+ LR ++++ DE A LDG+DVLFTG +SKWTN +GA VAD+F
Sbjct: 100 VDGVRKALQDLGLR---IVEMGDENATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTF 156
Query: 88 PEYPCTAIKVKNKN 101
++ + + V +
Sbjct: 157 RDFAVSTVPVSGAS 170
>sp|Q99LD8|DDAH2_MOUSE N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Mus musculus
GN=Ddah2 PE=1 SV=1
Length = 285
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 35 VDTVR-AIIKKELRPPQVLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSF 87
VD VR A+ LR ++++ DE A LDG+DVLFTG +SKWTN +GA VAD+F
Sbjct: 100 VDGVRKALQDLGLR---IVEMGDENATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTF 156
Query: 88 PEYPCTAIKVKNKN 101
++ + + V +
Sbjct: 157 RDFAVSTVPVSGSS 170
>sp|Q3SX44|DDAH2_BOVIN N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Bos taurus
GN=DDAH2 PE=2 SV=1
Length = 285
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 10/74 (13%)
Query: 35 VDTVR-AIIKKELRPPQVLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSF 87
VD VR A+ LR ++++ DE A LDG+DVLFTG +SKWTN +GA VAD+F
Sbjct: 100 VDGVRKALQDLGLR---IVEMGDENATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTF 156
Query: 88 PEYPCTAIKVKNKN 101
++ + + V + +
Sbjct: 157 RDFAVSTVPVTSTS 170
>sp|O08557|DDAH1_RAT N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Rattus
norvegicus GN=Ddah1 PE=1 SV=3
Length = 285
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKVKN 99
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V +
Sbjct: 116 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD 170
>sp|O94760|DDAH1_HUMAN N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Homo sapiens
GN=DDAH1 PE=1 SV=3
Length = 285
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKVKN 99
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V +
Sbjct: 116 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD 170
>sp|Q9CWS0|DDAH1_MOUSE N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Mus musculus
GN=Ddah1 PE=1 SV=3
Length = 285
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKVKN 99
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V +
Sbjct: 116 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVAD 170
>sp|P56965|DDAH1_BOVIN N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Bos taurus
GN=DDAH1 PE=1 SV=3
Length = 285
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKV 97
+++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V
Sbjct: 116 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPV 168
>sp|Q7MV47|DNLJ_PORGI DNA ligase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
GN=ligA PE=3 SV=1
Length = 669
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 8 GTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVL 67
GT R+ + FI + D + G+F+YV+ II P+++ ++ + +DG ++
Sbjct: 350 GTVVRRASLHNADFIAEKDLHEGDFVYVEKGGEII------PKIVGVDTDARSIDGRPIV 403
Query: 68 FT 69
FT
Sbjct: 404 FT 405
>sp|B2RKL2|DNLJ_PORG3 DNA ligase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM
20709 / JCM 12257) GN=ligA PE=3 SV=1
Length = 669
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 8 GTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVL 67
GT R+ + FI + D + G+F+YV+ II P+++ ++ + +DG ++
Sbjct: 350 GTVVRRASLHNADFIAEKDLHEGDFVYVEKGGEII------PKIVGVDTDARSIDGRPIV 403
Query: 68 FT 69
FT
Sbjct: 404 FT 405
>sp|Q9Y8N2|Y2601_AERPE Uncharacterized protein APE_2601.1 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_2601.1 PE=3 SV=2
Length = 270
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 30 GNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPE 89
G+ + + + + ++PP L E + + G V+F G+S TN +G + +FP
Sbjct: 102 GHVVSILSSMGLEIHPVKPPGTL--EGGDVLVTGEGVVFAGLSSRTNREGVETLKTAFPN 159
Query: 90 YPCTAIKVKN 99
+ K
Sbjct: 160 VNVETLNAKG 169
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 63 GSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTG 111
G DVL + I+KW GA V D F P I K + K K + S G
Sbjct: 505 GVDVLSSDIAKWAMSFGAEVVLD-FSVPPTHLIAAKIRTEKVKKAVSMG 552
>sp|P86976|VM1B1_BOTBA Zinc metalloproteinase barnettlysin-1 OS=Bothrops barnetti PE=1
SV=1
Length = 202
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 50 QVLDIEDEEAKLDGSDVLFTGISKWTN------EKGARAVADSFPEYPCTAIKVKNKNPK 103
Q+++I E + D+L TG+ W+N + A DSF E+ +
Sbjct: 35 QMVNIMKEAYRYLYIDILLTGVEIWSNKDLINVQPAAPQTLDSFGEWRXXXXXXXKSHDN 94
Query: 104 AKMSTSTGID 113
A++ TST D
Sbjct: 95 AQLLTSTDFD 104
>sp|P85420|VM1A1_BOTAT Snake venom metalloproteinase atroxlysin-1 OS=Bothrops atrox PE=1
SV=2
Length = 202
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 47 RPPQVLDIEDEEAKLDGSDVLFTGISKWTN------EKGARAVADSFPEYPCTAIKVKNK 100
R Q+++I E D+L TG+ W+N + A DSF E+ T + +
Sbjct: 32 RIHQMVNIMKEAYSTMYIDILLTGVEIWSNKDLINVQPAAPQTLDSFGEWRKTDLLNRKS 91
Query: 101 NPKAKMSTST 110
+ A++ TST
Sbjct: 92 HDNAQLLTST 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,238,635
Number of Sequences: 539616
Number of extensions: 1980605
Number of successful extensions: 4468
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4448
Number of HSP's gapped (non-prelim): 25
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)