Query psy958
Match_columns 137
No_of_seqs 102 out of 272
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 23:17:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1834 N-Dimethylarginine dim 99.8 3.8E-19 8.1E-24 148.3 7.4 103 17-123 76-189 (267)
2 PRK01388 arginine deiminase; P 99.7 9.3E-18 2E-22 146.0 9.2 100 18-121 167-288 (406)
3 TIGR01078 arcA arginine deimin 99.7 3.6E-17 7.8E-22 142.1 9.1 103 17-121 163-286 (405)
4 PF02274 Amidinotransf: Amidin 99.7 6.2E-17 1.3E-21 130.7 8.4 105 17-123 72-196 (281)
5 COG2235 ArcA Arginine deiminas 99.0 6.4E-10 1.4E-14 97.7 7.6 90 28-119 180-288 (409)
6 PF04371 PAD_porph: Porphyromo 94.3 0.075 1.6E-06 45.4 4.9 60 35-98 229-312 (329)
7 PRK13551 agmatine deiminase; P 90.5 1.3 2.8E-05 38.7 7.5 26 73-98 317-342 (362)
8 TIGR03380 agmatine_aguA agmati 86.4 3.3 7.2E-05 36.1 7.4 26 73-98 314-339 (357)
9 COG2957 Peptidylarginine deimi 78.7 5.4 0.00012 35.1 5.6 63 34-98 243-327 (346)
10 PF04371 PAD_porph: Porphyromo 78.1 6.2 0.00014 33.7 5.8 78 40-122 121-220 (329)
11 PLN02690 Agmatine deiminase 70.5 5.5 0.00012 35.0 3.7 29 74-102 329-364 (374)
12 PF01106 NifU: NifU-like domai 61.8 5.7 0.00012 26.6 1.7 26 70-95 41-68 (68)
13 COG2333 ComEC Predicted hydrol 57.3 16 0.00034 31.2 4.0 72 61-135 180-261 (293)
14 PF11821 DUF3341: Protein of u 54.6 14 0.00029 29.4 2.9 35 16-54 136-172 (173)
15 TIGR03380 agmatine_aguA agmati 52.3 1E+02 0.0022 27.0 8.2 81 36-120 127-228 (357)
16 PLN02690 Agmatine deiminase 51.1 1.1E+02 0.0025 26.9 8.4 79 38-120 141-241 (374)
17 COG3660 Predicted nucleoside-d 46.1 76 0.0016 27.9 6.3 86 5-98 57-169 (329)
18 PF13380 CoA_binding_2: CoA bi 44.9 22 0.00048 25.7 2.6 58 66-123 3-67 (116)
19 PRK13551 agmatine deiminase; P 44.4 1.5E+02 0.0032 26.1 8.0 82 36-120 129-231 (362)
20 PF02274 Amidinotransf: Amidin 41.7 39 0.00084 27.2 3.8 61 34-98 199-263 (281)
21 PF12641 Flavodoxin_3: Flavodo 38.0 1.1E+02 0.0025 23.5 5.7 71 27-98 3-76 (160)
22 PF02845 CUE: CUE domain; Int 33.4 41 0.00089 20.0 2.1 18 76-93 1-18 (42)
23 COG4874 Uncharacterized protei 33.3 68 0.0015 27.8 4.1 91 28-119 109-217 (318)
24 PF12724 Flavodoxin_5: Flavodo 32.9 1.2E+02 0.0026 22.1 4.9 42 27-69 3-49 (143)
25 PF13689 DUF4154: Domain of un 32.6 1.6E+02 0.0036 21.6 5.7 59 51-113 57-116 (145)
26 smart00546 CUE Domain that may 32.4 45 0.00097 19.9 2.1 19 76-94 2-20 (43)
27 PF07905 PucR: Purine cataboli 32.1 53 0.0012 23.7 2.9 45 51-95 30-76 (123)
28 KOG1481|consensus 31.6 42 0.0009 29.8 2.6 45 64-108 322-368 (391)
29 cd04885 ACT_ThrD-I Tandem C-te 29.8 1.1E+02 0.0023 19.6 3.8 60 28-92 5-66 (68)
30 TIGR01855 IMP_synth_hisH imida 27.5 1.2E+02 0.0027 23.4 4.4 38 32-72 8-46 (196)
31 COG1832 Predicted CoA-binding 25.7 65 0.0014 25.1 2.5 44 68-111 21-69 (140)
32 TIGR02717 AcCoA-syn-alpha acet 25.7 1.6E+02 0.0034 26.1 5.2 60 64-123 8-76 (447)
33 cd04893 ACT_GcvR_1 ACT domains 24.8 1.7E+02 0.0036 19.3 4.1 35 29-68 9-43 (77)
34 cd04895 ACT_ACR_1 ACT domain-c 21.6 2.7E+02 0.0058 18.9 4.8 54 29-87 9-68 (72)
35 COG0694 Thioredoxin-like prote 20.0 1.1E+02 0.0025 22.0 2.7 20 70-89 57-77 (93)
No 1
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=99.78 E-value=3.8e-19 Score=148.32 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=90.7
Q ss_pred cccceeeeCcC-CCCcHHhHHHHHHHHHhccCCCceEEccCCCceeeC-CcEEee-------ecCccccHHHHHHHHHhC
Q psy958 17 FDDHFIEKCDK-YLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDG-SDVLFT-------GISKWTNEKGARAVADSF 87 (137)
Q Consensus 17 ~~~~~~~~~~~-~~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEG-GDVL~t-------GlS~RTN~eGa~~La~~f 87 (137)
+.+.-+++ .+ =++|+||...+++|++ ++|++ ++.+..+ +.+|| ||||++ |.|.|||.+|++||++.|
T Consensus 76 ~~~~avl~-r~~~p~R~gE~~~~~~~~~-~lgi~-i~~~~~~-~~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~l~~~L 151 (267)
T COG1834 76 TGEGAVLA-RMGAPERRGEEEAIKETLE-SLGIP-IYPRVEA-GVFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQLQAWL 151 (267)
T ss_pred ecccEEEe-ccCChhhccCHHHHHHHHH-HcCCc-ccccccC-CCccccccEEEeCCcEEEEEeccccchHHHHHHHHHh
Confidence 34555555 44 5899999999999999 99999 8877764 89999 999988 999999999999999999
Q ss_pred C-CCCeEEEeCC-CCCCCccccccccCCeEEEEcCchh
Q psy958 88 P-EYPCTAIKVK-NKNPKAKMSTSTGIDQLLVRTQVEM 123 (137)
Q Consensus 88 p-~y~V~~V~v~-~~LHLK~~vs~lg~~~llv~~~~~~ 123 (137)
+ +|.|+.+.++ .+|||||+|++++++++|++.+--.
T Consensus 152 ~~~~~v~~~~~~~~~lHLdt~~~~l~e~~al~y~~~~~ 189 (267)
T COG1834 152 EEGYEVSLVRLDERYLHLDTVFNPLAEGLALAYPPAFS 189 (267)
T ss_pred ccCcEEEEEecCCceeehhheeeeccCcceeecchhcc
Confidence 9 9999999997 5899999999999999999976443
No 2
>PRK01388 arginine deiminase; Provisional
Probab=99.73 E-value=9.3e-18 Score=145.98 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=82.6
Q ss_pred ccceeeeCcC-CCCcHHhHHHHHHHHHhcc------CCCceEEc-cCCCceeeCCcEEee-------ecCccccHHHHHH
Q psy958 18 DDHFIEKCDK-YLGNFIYVDTVRAIIKKEL------RPPQVLDI-EDEEAKLDGSDVLFT-------GISKWTNEKGARA 82 (137)
Q Consensus 18 ~~~~~~~~~~-~~SR~gE~~~i~~~L~k~l------g~~~i~~i-~~p~gtlEGGDVL~t-------GlS~RTN~eGa~~ 82 (137)
.+..+++ ++ -++|++|+..++.+++ .+ +++ ++.. .. ++++||||||++ |+|.|||.+||++
T Consensus 167 ~~g~ii~-~m~~~~Rr~E~~~~~~i~~-~hp~f~~~~~~-i~~~~~~-~~~iEGGDvl~l~~~~l~IG~s~RTn~~gie~ 242 (406)
T PRK01388 167 GGGVTIN-PMAWPARRRETLLTEAIYK-HHPRFAGADVP-VWDDRHG-NATLEGGDVLVLGKGVVAIGMSERTSPQAIEQ 242 (406)
T ss_pred CCEEEEe-CCCChhhCccHHHHHHHHH-hCcccccCCce-EEecCCC-CCCCccceEEEECCCEEEEEecccCCHHHHHH
Confidence 3445556 44 7999999999999997 42 455 5433 45 499999999977 9999999999999
Q ss_pred HHHhC-C---CCCeEEEeCCC---CCCCccccccccCCeEEEEcCc
Q psy958 83 VADSF-P---EYPCTAIKVKN---KNPKAKMSTSTGIDQLLVRTQV 121 (137)
Q Consensus 83 La~~f-p---~y~V~~V~v~~---~LHLK~~vs~lg~~~llv~~~~ 121 (137)
|++.+ + .++|++|++++ ++||||+||++++++++++..-
T Consensus 243 La~~l~~~~~~~~Vi~v~ip~~r~~mHLDtvft~vd~d~~l~~p~~ 288 (406)
T PRK01388 243 LARSLFKKGAAKRVLAVEIPKSRAFMHLDTVFTMVDYDKFTVYPEI 288 (406)
T ss_pred HHHHHhhcCCCcEEEEEeccCCCCceeCCccccccCCCeEEEehhh
Confidence 99887 3 47999999964 8999999999999999988764
No 3
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=99.70 E-value=3.6e-17 Score=142.09 Aligned_cols=103 Identities=23% Similarity=0.265 Sum_probs=84.1
Q ss_pred cccceeeeCcC-CCCcHHhHHHHHHHHHh-----ccCCCceEEccCCCceeeCCcEEee-------ecCccccHHHHHHH
Q psy958 17 FDDHFIEKCDK-YLGNFIYVDTVRAIIKK-----ELRPPQVLDIEDEEAKLDGSDVLFT-------GISKWTNEKGARAV 83 (137)
Q Consensus 17 ~~~~~~~~~~~-~~SR~gE~~~i~~~L~k-----~lg~~~i~~i~~p~gtlEGGDVL~t-------GlS~RTN~eGa~~L 83 (137)
+.+..+++ ++ -++|++|+..++.++++ +.+++ ++.....++++||||||++ |+|.|||.+|+++|
T Consensus 163 i~~g~vi~-~m~~~~Rr~E~~~~~~i~~~hp~f~~~g~~-i~~~~~~~~~iEGGDvl~l~~~~l~IG~s~RTn~~gie~L 240 (405)
T TIGR01078 163 IGNGVTIN-PMYYKARQRETLFTRAIFKHHPRFANTEFP-IWYDRSETASIEGGDVLVLNKDVLAIGISERTSAQSVEKL 240 (405)
T ss_pred ECCeEEEe-CCCchhhCCcHHHHHHHHHhCchhhccCCc-EEecCCCCCccccceEEEECCCEEEEEecccCCHHHHHHH
Confidence 34556666 44 79999999999999872 24667 7665533499999999976 99999999999999
Q ss_pred HHhC-CC---C-CeEEEeCCC---CCCCccccccccCCeEEEEcCc
Q psy958 84 ADSF-PE---Y-PCTAIKVKN---KNPKAKMSTSTGIDQLLVRTQV 121 (137)
Q Consensus 84 a~~f-p~---y-~V~~V~v~~---~LHLK~~vs~lg~~~llv~~~~ 121 (137)
++.+ +. + +|++|++++ ++||||+||++++++++++..-
T Consensus 241 a~~L~~~~~~~~~Vi~v~ip~~r~~mHLDtvft~vd~d~~l~~p~~ 286 (405)
T TIGR01078 241 AKSLFANKGGFKKVLAINIPKNRALMHLDTVFTMVDYDKFTVFPEV 286 (405)
T ss_pred HHHhhhccCCCCEEEEEEcCCCCCcccCCccccccCCCeEEEchhH
Confidence 9994 32 4 899999963 7999999999999999988754
No 4
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=99.69 E-value=6.2e-17 Score=130.72 Aligned_cols=105 Identities=24% Similarity=0.253 Sum_probs=79.7
Q ss_pred cccceeeeCcC-CCCcHHhHHHHHHHHHhc--cCCCceEEcc---CCCceeeCCcEEee-------ecCccccHHHHHHH
Q psy958 17 FDDHFIEKCDK-YLGNFIYVDTVRAIIKKE--LRPPQVLDIE---DEEAKLDGSDVLFT-------GISKWTNEKGARAV 83 (137)
Q Consensus 17 ~~~~~~~~~~~-~~SR~gE~~~i~~~L~k~--lg~~~i~~i~---~p~gtlEGGDVL~t-------GlS~RTN~eGa~~L 83 (137)
+.+.++++ ++ -++|++|+..++.+++ . ...+.+..++ .+++++|||||+++ |.|.|||.+|+++|
T Consensus 72 ~~~~~ii~-~m~~~~R~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lEGGDv~~~~~~~~v~G~g~RTn~~g~~~l 149 (281)
T PF02274_consen 72 IGGGVIIG-RMRAPSRRGEEDVYKEIFE-KHPFNIPRVLDIEEENGDPGYLEGGDVLVLGDNVLVIGVGSRTNEEGIEQL 149 (281)
T ss_dssp ECTEEEE--B-SSGGGHGHHHHHHHHHH-HSCCCTCCEEEEEEC--TTS-B-GGGEEEESTEEEEEEESSSS-HHHHHHH
T ss_pred EcCCEEEe-CCChHHhcCcchHHHHHHH-hhccccceeeCCccccccCceecCcEEEEECCEEEEEeecCCCCHHHHHHH
Confidence 56677887 66 8899999999999999 6 2223355554 22499999999987 99999999999999
Q ss_pred HHhCCCC----Ce--EEEeCC-CCCCCccccccccCCeEEEEcCchh
Q psy958 84 ADSFPEY----PC--TAIKVK-NKNPKAKMSTSTGIDQLLVRTQVEM 123 (137)
Q Consensus 84 a~~fp~y----~V--~~V~v~-~~LHLK~~vs~lg~~~llv~~~~~~ 123 (137)
++.|+.. .+ ..++.. ..+||||+|+++++++++++..--.
T Consensus 150 ~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~ 196 (281)
T PF02274_consen 150 ARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDAFD 196 (281)
T ss_dssp HHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCHHC
T ss_pred HHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcccc
Confidence 9999855 33 445554 8899999999999999999877543
No 5
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism]
Probab=99.03 E-value=6.4e-10 Score=97.74 Aligned_cols=90 Identities=21% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCCcHHhHHHHHHHHHhccC-C---CceEEccCCCceeeCCcEEee-------ecCccccHHHHHHHHHhCCC-----CC
Q psy958 28 YLGNFIYVDTVRAIIKKELR-P---PQVLDIEDEEAKLDGSDVLFT-------GISKWTNEKGARAVADSFPE-----YP 91 (137)
Q Consensus 28 ~~SR~gE~~~i~~~L~k~lg-~---~~i~~i~~p~gtlEGGDVL~t-------GlS~RTN~eGa~~La~~fp~-----y~ 91 (137)
.+.|+.|+...+-+++ .+- . +.+...+++ +++||||+|.. |+|.||..+|+++|++.+=+ .+
T Consensus 180 ~~aR~rEt~i~~~i~~-~hp~f~~~~~~~~~~~~-~~iEGGD~~~~g~~~~lIGvseRT~~~~ie~La~~lf~~~~~~~~ 257 (409)
T COG2235 180 YPARRRETLIAEFILK-FHPIFAGVPIWFGRDDK-ATIEGGDFLPLGKDVVLIGVSERTDWGAVEALAKLLFKDDVGFKR 257 (409)
T ss_pred hhhhhhHHHHHHHHHH-hCccccCCeeecCCCcc-ceecCcceEEecCceEEEEecccCCHHHHHHHHHHhhcCCcceeE
Confidence 6799999999999998 542 2 213455664 99999999976 99999999999999998742 25
Q ss_pred eEEEeCC---CCCCCccccccccCCeEEEEc
Q psy958 92 CTAIKVK---NKNPKAKMSTSTGIDQLLVRT 119 (137)
Q Consensus 92 V~~V~v~---~~LHLK~~vs~lg~~~llv~~ 119 (137)
|.++.++ .+.|||++||+++.|..+++.
T Consensus 258 v~a~~~~k~ra~MHLDTvFt~vd~D~f~v~~ 288 (409)
T COG2235 258 VIAIEIPKNRAFMHLDTVFTMVDRDKFTVHP 288 (409)
T ss_pred EeeeecccchhhhchheeeeeecCceEEEeH
Confidence 6667775 578999999999999999887
No 6
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=94.33 E-value=0.075 Score=45.39 Aligned_cols=60 Identities=10% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccC------CCceEEccCCCc-eeeC--------------CcEEee---ecCccccHHHHHHHHHhCCCC
Q psy958 35 VDTVRAIIKKELR------PPQVLDIEDEEA-KLDG--------------SDVLFT---GISKWTNEKGARAVADSFPEY 90 (137)
Q Consensus 35 ~~~i~~~L~k~lg------~~~i~~i~~p~g-tlEG--------------GDVL~t---GlS~RTN~eGa~~La~~fp~y 90 (137)
.+.+.+.|+ ... +. |++++.|.. .-.. .|++++ |.. +++++.++|++.||++
T Consensus 229 ~~~~~~~L~-~~~da~G~~~~-i~~lp~p~~~~~~~~~~~~~sY~Nfli~n~~VivP~fg~~--~D~~Al~~l~~~fP~r 304 (329)
T PF04371_consen 229 LEENLEILS-AATDADGRPFE-IVELPLPDPPYDEDGERLPASYVNFLITNGAVIVPVFGDP--ADEAALEILQEAFPDR 304 (329)
T ss_dssp HHHHHHHHH-T-B-TTSSB-E-EEEEEB-SS-BETTTEEE--BTT--EEETTEEEEEE-SST--THHHHHHHHHHHSTTS
T ss_pred HHHHHHHHH-hhhccCCCeeE-EEEecCCCcccccCCcCccceeeeeEEECCEEEEccCCCh--HHHHHHHHHHHHCCCC
Confidence 566778887 532 56 899988741 1222 333334 655 9999999999999999
Q ss_pred CeEEEeCC
Q psy958 91 PCTAIKVK 98 (137)
Q Consensus 91 ~V~~V~v~ 98 (137)
+|++|+..
T Consensus 305 ~Vv~i~~~ 312 (329)
T PF04371_consen 305 KVVGIDAR 312 (329)
T ss_dssp EEEEEETH
T ss_pred EEEEEeHH
Confidence 99999986
No 7
>PRK13551 agmatine deiminase; Provisional
Probab=90.48 E-value=1.3 Score=38.73 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=23.8
Q ss_pred ccccHHHHHHHHHhCCCCCeEEEeCC
Q psy958 73 KWTNEKGARAVADSFPEYPCTAIKVK 98 (137)
Q Consensus 73 ~RTN~eGa~~La~~fp~y~V~~V~v~ 98 (137)
..+++++.++|++.||+++|++|+..
T Consensus 317 ~~~D~~A~~~l~~~fP~r~Vv~I~~~ 342 (362)
T PRK13551 317 DPNDALALEILQQMFPDRKVVGVPAR 342 (362)
T ss_pred CchhHHHHHHHHHHCCCCeEEEEEcH
Confidence 45799999999999999999999986
No 8
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=86.42 E-value=3.3 Score=36.13 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=23.8
Q ss_pred ccccHHHHHHHHHhCCCCCeEEEeCC
Q psy958 73 KWTNEKGARAVADSFPEYPCTAIKVK 98 (137)
Q Consensus 73 ~RTN~eGa~~La~~fp~y~V~~V~v~ 98 (137)
..++++++++|++.||+++|++|+..
T Consensus 314 ~~~D~~A~~~l~~~fP~r~Vv~I~~~ 339 (357)
T TIGR03380 314 DPNDKLAQQQLQELFPDRKVVGVPAR 339 (357)
T ss_pred CchhHHHHHHHHHHCCCCeEEEEEcH
Confidence 45799999999999999999999986
No 9
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=78.68 E-value=5.4 Score=35.14 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcc------CCCceEEccCCCceeeC-CcEE--------ee-------ecCccccHHHHHHHHHhCCCCC
Q psy958 34 YVDTVRAIIKKEL------RPPQVLDIEDEEAKLDG-SDVL--------FT-------GISKWTNEKGARAVADSFPEYP 91 (137)
Q Consensus 34 E~~~i~~~L~k~l------g~~~i~~i~~p~gtlEG-GDVL--------~t-------GlS~RTN~eGa~~La~~fp~y~ 91 (137)
...++.+.|+ ++ .+. +++++-|.-.+|. |+-| +. =.-+.+++...+.|++.||+++
T Consensus 243 ~~q~~~~~L~-~~~d~~G~~~~-l~~Lp~P~~~~~e~~~rL~aSY~NFlI~N~avIvP~y~D~~D~~a~~~L~~~fP~re 320 (346)
T COG2957 243 ALQAMLEELK-ELRDAKGRPLK-LHKLPIPKPVTDEDGERLPASYVNFLIINGAVIVPQYDDPNDALALDVLQQAFPGRE 320 (346)
T ss_pred HHHHHHHHHH-hccccCCCeeE-EEEcCCCcccccccCCCCcccceeEEEecCeEEeeccCCcchHHHHHHHHHhCCCCe
Confidence 4555666665 33 234 8888877444444 4433 11 4678999999999999999999
Q ss_pred eEEEeCC
Q psy958 92 CTAIKVK 98 (137)
Q Consensus 92 V~~V~v~ 98 (137)
|+.||..
T Consensus 321 VVGVp~r 327 (346)
T COG2957 321 VVGVPAR 327 (346)
T ss_pred EeccccH
Confidence 9999975
No 10
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=78.09 E-value=6.2 Score=33.73 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=50.9
Q ss_pred HHHHhccCCCceEEccCCCceeeCCcEEeee-----------c-C----ccccHHHHHHHHHhCCCCCeEEEe---CC--
Q psy958 40 AIIKKELRPPQVLDIEDEEAKLDGSDVLFTG-----------I-S----KWTNEKGARAVADSFPEYPCTAIK---VK-- 98 (137)
Q Consensus 40 ~~L~k~lg~~~i~~i~~p~gtlEGGDVL~tG-----------l-S----~RTN~eGa~~La~~fp~y~V~~V~---v~-- 98 (137)
.+.+ .++++ +...+ -.+|||.+...| + . ..|-++--+.|++.|-=-+|+-+| +.
T Consensus 121 ~~a~-~~~~~-~~~~~---lvlEGG~i~~dG~Gtli~Te~~ll~~nRNp~~s~~eie~~L~~~lG~~kviwL~~g~~~~d 195 (329)
T PF04371_consen 121 KIAK-ALGLP-VIKSP---LVLEGGNIESDGEGTLITTESCLLNPNRNPGLSKAEIEAELKRYLGVEKVIWLPHGLLGDD 195 (329)
T ss_dssp HHHH-HHTTT-EEEEE---EE--GGGEEEESSSEEEEEHHHHTSTTTSTTS-HHHHHHHHHHHHT-SEEEEESS-STTTT
T ss_pred HHHH-HhCCC-cccCC---eEEecCcEEECCCceEEEEeeeEecCccCccCCHHHHHHHHHHHhCCCEEEEecCCcCCCC
Confidence 3444 78888 66554 588998887773 1 1 235666777788888645688788 33
Q ss_pred -CCCCCccccccccCCeEEEEcCch
Q psy958 99 -NKNPKAKMSTSTGIDQLLVRTQVE 122 (137)
Q Consensus 99 -~~LHLK~~vs~lg~~~llv~~~~~ 122 (137)
..=|.|+.+.+++|+++|+....+
T Consensus 196 ~t~GHiD~~arFv~~~~vl~~~~~d 220 (329)
T PF04371_consen 196 DTDGHIDGIARFVDPGTVLVSRCDD 220 (329)
T ss_dssp TTSS-GGGTEEEEETTEEEEEE-S-
T ss_pred CcCCccceeEEecCCCEEEEEecCC
Confidence 245999999999999999987654
No 11
>PLN02690 Agmatine deiminase
Probab=70.52 E-value=5.5 Score=35.03 Aligned_cols=29 Identities=7% Similarity=0.243 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHhCCCCCeEEE-eCC------CCCC
Q psy958 74 WTNEKGARAVADSFPEYPCTAI-KVK------NKNP 102 (137)
Q Consensus 74 RTN~eGa~~La~~fp~y~V~~V-~v~------~~LH 102 (137)
.++++++++|++.||+++|++| +.. +.+|
T Consensus 329 ~~D~~A~~~l~~~fP~r~Vv~i~~~~~l~~~GG~iH 364 (374)
T PLN02690 329 KWDKEAIEVLSEAFPNHKVVGVESAREIVLGGGNIH 364 (374)
T ss_pred cccHHHHHHHHHHCCCCeEEEecCHHHHHhCCCccE
Confidence 5799999999999999999999 654 5566
No 12
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=61.75 E-value=5.7 Score=26.61 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=19.3
Q ss_pred ecCccccHHHHHH-HHHhCCC-CCeEEE
Q psy958 70 GISKWTNEKGARA-VADSFPE-YPCTAI 95 (137)
Q Consensus 70 GlS~RTN~eGa~~-La~~fp~-y~V~~V 95 (137)
..|.-|-..++++ |++.+|+ ..|++|
T Consensus 41 ~~s~~Tl~~~Ie~~L~~~~~~v~~V~~v 68 (68)
T PF01106_consen 41 PSSDMTLKQGIEQALREAVPEVKRVVPV 68 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHSTT-SEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCceEEEC
Confidence 4667888899987 8889985 455553
No 13
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=57.35 E-value=16 Score=31.20 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=50.0
Q ss_pred eeCCcEEeeecCccccHHHHHHHHHhCCCCCeEEEeC--CC--CCCCccccccccCCeEEEEcCc------hhhhccccc
Q psy958 61 LDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKV--KN--KNPKAKMSTSTGIDQLLVRTQV------EMFLNDSRL 130 (137)
Q Consensus 61 lEGGDVL~tGlS~RTN~eGa~~La~~fp~y~V~~V~v--~~--~LHLK~~vs~lg~~~llv~~~~------~~~~~~~~~ 130 (137)
..+-.+||||-....++ +.|++..++.++.-+.+ ++ .=--+-.+..+.|.+++|+.+. +-+.+-.||
T Consensus 180 ~g~~s~LlTGD~e~~~E---~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~~v~Pk~AliS~G~~N~yghPh~~Vl~rl 256 (293)
T COG2333 180 FGGNSFLLTGDLEEKGE---KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLEAVKPKVALISSGRNNRYGHPHQEVLERL 256 (293)
T ss_pred eCCeeEEEecCCCchhH---HHHHhhCCCccceEEEeccCCccccCcHHHHHhcCCcEEEEEeeccCCCCCCcHHHHHHH
Confidence 34555666687777776 88999998766444444 32 2345567889999999999988 666666666
Q ss_pred ccCCC
Q psy958 131 GNRGQ 135 (137)
Q Consensus 131 ~~~~~ 135 (137)
..++-
T Consensus 257 ~~~~~ 261 (293)
T COG2333 257 QKRGI 261 (293)
T ss_pred HhcCC
Confidence 66553
No 14
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=54.59 E-value=14 Score=29.44 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.8
Q ss_pred ccccceeeeCcCCCCcHH--hHHHHHHHHHhccCCCceEEc
Q psy958 16 RFDDHFIEKCDKYLGNFI--YVDTVRAIIKKELRPPQVLDI 54 (137)
Q Consensus 16 ~~~~~~~~~~~~~~SR~g--E~~~i~~~L~k~lg~~~i~~i 54 (137)
.+||+|++. ++++.+ ..+.+++.|+ ++|-..|.++
T Consensus 136 ~tdD~F~l~---i~~~d~~~~~~~~~~~L~-~~Ga~eV~~v 172 (173)
T PF11821_consen 136 ATDDRFFLA---IEADDPKFDEEKTRAFLE-SLGAEEVEEV 172 (173)
T ss_pred ecCCeEEEE---EEcCCCCCCHHHHHHHHH-HcCCeEEEec
Confidence 689999999 777777 6889999999 8886645544
No 15
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=52.28 E-value=1e+02 Score=27.02 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=54.7
Q ss_pred HHHHHHHHhccCCCceEEccCCCceeeCCcEEeee----cC------------ccccHHHHHHHHHhCCCCCeEEEeC--
Q psy958 36 DTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTG----IS------------KWTNEKGARAVADSFPEYPCTAIKV-- 97 (137)
Q Consensus 36 ~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~tG----lS------------~RTN~eGa~~La~~fp~y~V~~V~v-- 97 (137)
+.+...|.+.+|++ +... + -.+|||.+.+.| ++ +.|-++=-+.|++.|---+|+=+|=
T Consensus 127 ~~v~~~ia~~~g~~-~~~~--~-lvlEGG~ie~dG~GtlltTe~clln~nRNP~ls~~eIe~~Lk~~LGv~kviWL~~g~ 202 (357)
T TIGR03380 127 DLVARKVCELEGID-RYRA--D-FVLEGGSIHVDGEGTLLTTEECLLSEGRNPHLTKEQIEEKLKDYLGVEKVIWLPDGL 202 (357)
T ss_pred HHHHHHHHHHcCCC-cccc--C-eEEeCCcEEECCCeeEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 34455555467777 4443 3 799999998872 11 2244555567888887556776651
Q ss_pred -C--CCCCCccccccccCCeEEEEcC
Q psy958 98 -K--NKNPKAKMSTSTGIDQLLVRTQ 120 (137)
Q Consensus 98 -~--~~LHLK~~vs~lg~~~llv~~~ 120 (137)
. -.=|-|+.+.+++|+++|+...
T Consensus 203 ~~DdTdGHID~~arFv~~~tvl~~~~ 228 (357)
T TIGR03380 203 YNDETNGHVDNLCCFVRPGEVALSWT 228 (357)
T ss_pred CCCCCCCcceeeEEEeCCCEEEEEec
Confidence 1 2349999999999999999854
No 16
>PLN02690 Agmatine deiminase
Probab=51.09 E-value=1.1e+02 Score=26.91 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=52.5
Q ss_pred HHHHHHhccCCCceEEccCCCceeeCCcEEeee----cC------------ccccHHHHHHHHHhCCCCCeEEEeC----
Q psy958 38 VRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTG----IS------------KWTNEKGARAVADSFPEYPCTAIKV---- 97 (137)
Q Consensus 38 i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~tG----lS------------~RTN~eGa~~La~~fp~y~V~~V~v---- 97 (137)
+...|.+..+++ ++. .+ -.+|||.+.+.| ++ ..|-++=-+.|++.|---+|+=+|=
T Consensus 141 v~~~la~~~g~~-~~~--~~-lvlEGGsie~DG~GtlltTe~clln~nRNP~lsk~~ie~~Lk~~LGv~kvIWL~~g~~~ 216 (374)
T PLN02690 141 VARKILEAERLP-RFP--HS-MILEGGSIHVDGEGTCLTTEECLLNPNRNPHLTKEEIEEELKEYLGVEKVIWLPRGLYG 216 (374)
T ss_pred HHHHHHHHcCCC-eec--CC-eEEcCCcEEECCCceEEEehhhhcCCCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 333444367777 444 33 799999998872 11 2344555567888786556776652
Q ss_pred -C-CCCCCccccccccCCeEEEEcC
Q psy958 98 -K-NKNPKAKMSTSTGIDQLLVRTQ 120 (137)
Q Consensus 98 -~-~~LHLK~~vs~lg~~~llv~~~ 120 (137)
. -.=|.|+.+.+++|+++|+...
T Consensus 217 DddTdGHID~larFv~~~tvl~~~~ 241 (374)
T PLN02690 217 DDDTNGHVDNMCCFARPGVVLLSWT 241 (374)
T ss_pred CCCCCccceeeEEecCCCEEEEEec
Confidence 1 2349999999999999999843
No 17
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=46.14 E-value=76 Score=27.85 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=55.3
Q ss_pred cccccccccccccccceeeeCcCCCCcHHhHHHHHHHHHhccCCCceEEccCCCceeeC--CcEEee-------------
Q psy958 5 EYLGTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDG--SDVLFT------------- 69 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEG--GDVL~t------------- 69 (137)
|.+|++.||.-..--.++++ ..|+-+..++ .|+|.++..+++.|-+| .|.+ =|.+++
T Consensus 57 ~l~~~~~~r~p~~~Pdl~I~----aGrrta~l~~--~lkk~~~~~~vVqI~~P--rlp~~~fDlvivp~HD~~~~~s~~~ 128 (329)
T COG3660 57 ELFGPRLSRKPEQRPDLIIT----AGRRTAPLAF--YLKKKFGGIKVVQIQDP--RLPYNHFDLVIVPYHDWREELSDQG 128 (329)
T ss_pred HhhcCccccCccCCCceEEe----cccchhHHHH--HHHHhcCCceEEEeeCC--CCCcccceEEeccchhhhhhhhccC
Confidence 56788999988777778999 5688887776 56656665558888876 5555 343333
Q ss_pred -------ecCccccHHHHHHHHHhCCC-----CCeEEEeCC
Q psy958 70 -------GISKWTNEKGARAVADSFPE-----YPCTAIKVK 98 (137)
Q Consensus 70 -------GlS~RTN~eGa~~La~~fp~-----y~V~~V~v~ 98 (137)
|--.+-|..=.+.+.++|++ -+.++|-+.
T Consensus 129 ~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVG 169 (329)
T COG3660 129 PNILPINGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVG 169 (329)
T ss_pred CceeeccCCCCcccHHHhhhhHHHHHhhCCCCCceEEEEec
Confidence 65555555444444444443 466666663
No 18
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=44.94 E-value=22 Score=25.66 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=35.6
Q ss_pred EEeeecCccccHHHHHHHHHhCC-CCCeEEEeCC--CCCCCccccccc----cCCeEEEEcCchh
Q psy958 66 VLFTGISKWTNEKGARAVADSFP-EYPCTAIKVK--NKNPKAKMSTST----GIDQLLVRTQVEM 123 (137)
Q Consensus 66 VL~tGlS~RTN~eGa~~La~~fp-~y~V~~V~v~--~~LHLK~~vs~l----g~~~llv~~~~~~ 123 (137)
|.++|.|.+.+.-|-..++.... ||+|.+|.-+ +.+=++|+-++. ..|.++++-+++.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~ 67 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDK 67 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHH
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHH
Confidence 34559999888888887777775 8999999765 334455665554 5678888777654
No 19
>PRK13551 agmatine deiminase; Provisional
Probab=44.37 E-value=1.5e+02 Score=26.05 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=53.6
Q ss_pred HHHHHHHHhccCCCceEEccCCCceeeCCcEEeee----cC--------cc----ccHHHHHHHHHhCCCCCeEEEeC--
Q psy958 36 DTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTG----IS--------KW----TNEKGARAVADSFPEYPCTAIKV-- 97 (137)
Q Consensus 36 ~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~tG----lS--------~R----TN~eGa~~La~~fp~y~V~~V~v-- 97 (137)
+.+...|.+.+|++ .++.. + -.+|||.+...| ++ .| |-++=-+.|++.|---+|+=+|=
T Consensus 129 ~~v~~~la~~~g~~-~~~~~-~-lvlEGG~ie~DG~GtlltTe~clln~nRNP~ls~~~ie~~Lk~~LGv~kvIWL~~g~ 205 (362)
T PRK13551 129 DQVAQKVLEIEGRD-RYRAK-P-FVLEGGSIHVDGEGTLLTTEECLLNPNRNPHLTKEQIEQLLRDYLGVEKVIWLPDGI 205 (362)
T ss_pred HHHHHHHHHHcCCC-ccccc-C-eEEcCCcEEECCCeEEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 44555565467877 43321 3 799999998873 11 22 23444456777776556776652
Q ss_pred ---CCCCCCccccccccCCeEEEEcC
Q psy958 98 ---KNKNPKAKMSTSTGIDQLLVRTQ 120 (137)
Q Consensus 98 ---~~~LHLK~~vs~lg~~~llv~~~ 120 (137)
...=|.|+.+.+++|+++|+...
T Consensus 206 ~~DdTdGHiD~~arFv~~~~vl~~~~ 231 (362)
T PRK13551 206 YNDETDGHVDNVCCFVRPGEVALAWT 231 (362)
T ss_pred CCCCCCcchhheEEeeCCCEEEEEec
Confidence 12349999999999999998753
No 20
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=41.68 E-value=39 Score=27.23 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhccCCCceEEccCCCceeeCCcEEeee----cCccccHHHHHHHHHhCCCCCeEEEeCC
Q psy958 34 YVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTG----ISKWTNEKGARAVADSFPEYPCTAIKVK 98 (137)
Q Consensus 34 E~~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~tG----lS~RTN~eGa~~La~~fp~y~V~~V~v~ 98 (137)
+.+.+.++|+ +.+++ +++++..+..--|+-+|.+| ++...|..-.++|++. |++|+.+++.
T Consensus 199 ~~~~l~~~l~-~~~~~-iI~v~~~e~~~~~~N~l~l~~~~vi~~~~~~~~~~~L~~~--G~~v~~v~~~ 263 (281)
T PF02274_consen 199 EEEELEQALK-ERGFE-IIEVPEEEQWNFACNVLSLGPGKVIAYASNPRTNEQLEKA--GIEVIEVDFS 263 (281)
T ss_dssp HHHHHHHHHS-SSTCE-EEEESSCSCSGGGGS-EEECTTEEEEETTHHHHHHHHHHT--T-EEEEE-HH
T ss_pred HHHHHHHHhc-ccCcE-EEEeccchhhhccCCEEEecCCEEEECCCCHHHHHHHHhc--CCeEEEEcHH
Confidence 5677999998 77777 99998654455666666663 2333455555566665 8999999986
No 21
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=37.99 E-value=1.1e+02 Score=23.52 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCCCcHHhHHHHHHHHHhccCCCceEEccCCCceeeCCcEEeee---cCccccHHHHHHHHHhCCCCCeEEEeCC
Q psy958 27 KYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTG---ISKWTNEKGARAVADSFPEYPCTAIKVK 98 (137)
Q Consensus 27 ~~~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~tG---lS~RTN~eGa~~La~~fp~y~V~~V~v~ 98 (137)
+|.||.|=++.+.+++.+.++...++.+.+++..++.=|++|.| .....+..--+.|++ +.+.+|.-+-..
T Consensus 3 vYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~~-l~~KkV~lF~T~ 76 (160)
T PF12641_consen 3 VYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLKK-LKGKKVALFGTA 76 (160)
T ss_pred EEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHHH-ccCCeEEEEEec
Confidence 47899999999999998678772388888763348999999994 233556666666655 666666655554
No 22
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=33.43 E-value=41 Score=20.01 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=13.8
Q ss_pred cHHHHHHHHHhCCCCCeE
Q psy958 76 NEKGARAVADSFPEYPCT 93 (137)
Q Consensus 76 N~eGa~~La~~fp~y~V~ 93 (137)
+.+-+++|++.||+++..
T Consensus 1 ~~~~v~~L~~mFP~~~~~ 18 (42)
T PF02845_consen 1 REEMVQQLQEMFPDLDRE 18 (42)
T ss_dssp CHHHHHHHHHHSSSS-HH
T ss_pred CHHHHHHHHHHCCCCCHH
Confidence 467789999999987643
No 23
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=33.35 E-value=68 Score=27.81 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=56.0
Q ss_pred CCCcHHhH-HHHHHHHHhccCCCceE---EccCCCceeeCCcEEee---------ecCccccHHHHHHHHHhCCCCCeEE
Q psy958 28 YLGNFIYV-DTVRAIIKKELRPPQVL---DIEDEEAKLDGSDVLFT---------GISKWTNEKGARAVADSFPEYPCTA 94 (137)
Q Consensus 28 ~~SR~gE~-~~i~~~L~k~lg~~~i~---~i~~p~gtlEGGDVL~t---------GlS~RTN~eGa~~La~~fp~y~V~~ 94 (137)
-++||-|- +.+-..|++.+.+.+++ -+++....|||--+|+. |+|.|.|++=.+.+.+.+-=-+++-
T Consensus 109 ~~nRRlER~~~lid~lk~~~~v~~v~dy~~le~~~~FLEgTG~mV~Dh~nr~aY~~lS~Rad~~lLe~fc~~~gy~~vvf 188 (318)
T COG4874 109 CANRRLERPEALIDTLKQGFAVKKVHDYLALEEQQAFLEGTGVMVMDHPNRTAYAGLSQRADRELLEVFCEQIGYSRVVF 188 (318)
T ss_pred CccccccchHHHHHHHHhhhhhhhhhhhhccCcccceeeccceEEecccchhhhhhhhcccCHHHHHHHHHHcCCceeee
Confidence 36777773 34556665344444333 34444689999999876 9999999998888888774333433
Q ss_pred EeC-C----CCCCCccccccccCCeEEEEc
Q psy958 95 IKV-K----NKNPKAKMSTSTGIDQLLVRT 119 (137)
Q Consensus 95 V~v-~----~~LHLK~~vs~lg~~~llv~~ 119 (137)
... . ..-|---... ++.+.++++.
T Consensus 189 ~qT~de~g~PiYHTNVmMa-ige~favic~ 217 (318)
T COG4874 189 FQTRDESGSPIYHTNVMMA-IGEHFAVICD 217 (318)
T ss_pred eeeccccCCcceehhHHHH-hhhheeeeec
Confidence 322 1 3445443333 5666666654
No 24
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=32.86 E-value=1.2e+02 Score=22.14 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCCCcHHhHHHHHHHHHhccC--CCceEEccC---CCceeeCCcEEee
Q psy958 27 KYLGNFIYVDTVRAIIKKELR--PPQVLDIED---EEAKLDGSDVLFT 69 (137)
Q Consensus 27 ~~~SR~gE~~~i~~~L~k~lg--~~~i~~i~~---p~gtlEGGDVL~t 69 (137)
+|.|+.|=++.+.++|++.++ .. .+++.+ ....++.-|.++.
T Consensus 3 vY~S~~G~Tk~~A~~ia~~l~~~~~-~v~~~~~~~~~~~~~~yD~vi~ 49 (143)
T PF12724_consen 3 VYFSKTGNTKKIAEWIAEKLGEEGE-LVDLEKVEEDEPDLSDYDAVIF 49 (143)
T ss_pred EEECCCchHHHHHHHHHHHHhhhcc-EEEHHhhhhcccccccCCEEEE
Confidence 478899999999999986777 44 666654 2358899999887
No 25
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=32.63 E-value=1.6e+02 Score=21.63 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=44.4
Q ss_pred eEEccCCCceeeCCcEEeeecCccccHHHHHHHHHhCCCCCeEEEeC-CCCCCCccccccccCC
Q psy958 51 VLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKV-KNKNPKAKMSTSTGID 113 (137)
Q Consensus 51 i~~i~~p~gtlEGGDVL~tGlS~RTN~eGa~~La~~fp~y~V~~V~v-~~~LHLK~~vs~lg~~ 113 (137)
|..+..+ ..+.+.||||++-+. ....+++.+.+++.+|..|-= +++....+++++.-.+
T Consensus 57 v~~~~~~-~~~~~C~ilyi~~~~---~~~~~~i~~~~~~~~vLtIsd~~~f~~~G~~I~l~~~~ 116 (145)
T PF13689_consen 57 VRRLSSP-NEISGCHILYISSSE---SSQLPEILRKLPGKPVLTISDGEGFAEQGGMINLVREG 116 (145)
T ss_pred EEECCCC-cccccccEEEECCCC---hHHHHHHHHhcCCCceEEEECCCCccccCcEEEEEEEC
Confidence 6677764 678999999996555 445567777888888998865 4668888888876533
No 26
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=32.40 E-value=45 Score=19.85 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.2
Q ss_pred cHHHHHHHHHhCCCCCeEE
Q psy958 76 NEKGARAVADSFPEYPCTA 94 (137)
Q Consensus 76 N~eGa~~La~~fp~y~V~~ 94 (137)
|.+.+++|++.||+.+...
T Consensus 2 ~~~~v~~L~~mFP~l~~~~ 20 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEV 20 (43)
T ss_pred hHHHHHHHHHHCCCCCHHH
Confidence 6789999999999765443
No 27
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=32.15 E-value=53 Score=23.71 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.4
Q ss_pred eEEccCCCceeeCCcEEee-ecCccc-cHHHHHHHHHhCCCCCeEEE
Q psy958 51 VLDIEDEEAKLDGSDVLFT-GISKWT-NEKGARAVADSFPEYPCTAI 95 (137)
Q Consensus 51 i~~i~~p~gtlEGGDVL~t-GlS~RT-N~eGa~~La~~fp~y~V~~V 95 (137)
+.+.+++...+.||++++| |..-+. |.+-..++-+.+....+.++
T Consensus 30 v~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL 76 (123)
T PF07905_consen 30 VMEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGL 76 (123)
T ss_pred EeecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEE
Confidence 4555655457999999999 999888 66656666666653334433
No 28
>KOG1481|consensus
Probab=31.58 E-value=42 Score=29.80 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=37.8
Q ss_pred CcEEeeecCccccHHHHHHHHHhCC-CCCeEEEeCC-CCCCCccccc
Q psy958 64 SDVLFTGISKWTNEKGARAVADSFP-EYPCTAIKVK-NKNPKAKMST 108 (137)
Q Consensus 64 GDVL~tGlS~RTN~eGa~~La~~fp-~y~V~~V~v~-~~LHLK~~vs 108 (137)
-|=||+|-|+--|--++-++|++++ |.+++.|-.+ +.-||.-.++
T Consensus 322 ~dGLFvGsSsa~N~VaAv~vAk~LgpG~~iVtilCDsG~rh~sk~~~ 368 (391)
T KOG1481|consen 322 NDGLFVGSSSALNCVAAVRVAKTLGPGHTIVTILCDSGSRHLSKLFS 368 (391)
T ss_pred cCceEecchhhHHHHHHHHHHHhcCCCceEEEEEeCCcchHHHHhcC
Confidence 3557889999999999999999995 9999999986 6678876654
No 29
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.76 E-value=1.1e+02 Score=19.55 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=39.9
Q ss_pred CCCcHHhHHHHHHHHHhccCCCceEEccCCCceeeCCcEEeeecCccccHHHHHHHHHhCC--CCCe
Q psy958 28 YLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFP--EYPC 92 (137)
Q Consensus 28 ~~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~tGlS~RTN~eGa~~La~~fp--~y~V 92 (137)
++.|-|....+-.+|. . +.. |.++.-.....+.+.|++ ++..+ |.+=++.+.+.+. ||++
T Consensus 5 ipdkPG~l~~~~~~i~-~-~~n-I~~~~~~~~~~~~~~v~v-~ie~~-~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 5 FPERPGALKKFLELLG-P-PRN-ITEFHYRNQGGDEARVLV-GIQVP-DREDLAELKERLEALGYPY 66 (68)
T ss_pred CCCCCCHHHHHHHHhC-C-CCc-EEEEEEEcCCCCceEEEE-EEEeC-CHHHHHHHHHHHHHcCCCc
Confidence 6889999999999998 7 777 877654212244444443 55444 4566777777775 6764
No 30
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=27.50 E-value=1.2e+02 Score=23.39 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHhHHHHHHHHHhccCCCceEEccCCCceeeCCcEEee-ecC
Q psy958 32 FIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFT-GIS 72 (137)
Q Consensus 32 ~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~t-GlS 72 (137)
.+.+-+|.+.|+ .+|.+ +.-++.+ ..++.=|.++. |-+
T Consensus 8 ~gn~~~l~~~l~-~~g~~-v~v~~~~-~~l~~~d~lii~G~~ 46 (196)
T TIGR01855 8 VGNLGSVKRALK-RVGAE-PVVVKDS-KEAELADKLILPGVG 46 (196)
T ss_pred CcHHHHHHHHHH-HCCCc-EEEEcCH-HHhccCCEEEECCCC
Confidence 367889999999 88887 7666664 67888888877 633
No 31
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=25.72 E-value=65 Score=25.15 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=35.0
Q ss_pred eeecCccccHHHHHHHHHhCC-CCCeEEEeC--C--CCCCCcccccccc
Q psy958 68 FTGISKWTNEKGARAVADSFP-EYPCTAIKV--K--NKNPKAKMSTSTG 111 (137)
Q Consensus 68 ~tGlS~RTN~eGa~~La~~fp-~y~V~~V~v--~--~~LHLK~~vs~lg 111 (137)
++|+|.+....+....+-... ||+|+||.= . +.|=-|++-|+.+
T Consensus 21 vVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~d 69 (140)
T COG1832 21 VVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLAD 69 (140)
T ss_pred EEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHh
Confidence 559999999999988888776 999999954 3 5677777777553
No 32
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.72 E-value=1.6e+02 Score=26.15 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=43.1
Q ss_pred CcEEeeecCccccHHHHHHHHHhCC-CC--CeEEEeCC--CCCCCccccccc----cCCeEEEEcCchh
Q psy958 64 SDVLFTGISKWTNEKGARAVADSFP-EY--PCTAIKVK--NKNPKAKMSTST----GIDQLLVRTQVEM 123 (137)
Q Consensus 64 GDVL~tGlS~RTN~eGa~~La~~fp-~y--~V~~V~v~--~~LHLK~~vs~l----g~~~llv~~~~~~ 123 (137)
.-|.++|.|.+...-|-..++.... +| +|.+|.-+ ...-++|+-++- .+|.++|+-+++.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~ 76 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKY 76 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHH
Confidence 3466779999999999999999986 67 67766543 445667665533 3688888877664
No 33
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=24.84 E-value=1.7e+02 Score=19.29 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCcHHhHHHHHHHHHhccCCCceEEccCCCceeeCCcEEe
Q psy958 29 LGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLF 68 (137)
Q Consensus 29 ~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~ 68 (137)
++|.|=++.+..+|. +.|.. |.+++. +..+|...+
T Consensus 9 ~Dr~GiVa~vs~~la-~~g~n-I~d~~q---~~~~~~F~m 43 (77)
T cd04893 9 TDRPGILNELTRAVS-ESGCN-ILDSRM---AILGTEFAL 43 (77)
T ss_pred CCCChHHHHHHHHHH-HcCCC-EEEcee---eEEcCEEEE
Confidence 789999999999999 99988 999886 557776643
No 34
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.58 E-value=2.7e+02 Score=18.85 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=38.7
Q ss_pred CCcHHhHHHHHHHHHhccCCCceEEccCCCceeeCC---cEEee-ecCcc--ccHHHHHHHHHhC
Q psy958 29 LGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGS---DVLFT-GISKW--TNEKGARAVADSF 87 (137)
Q Consensus 29 ~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEGG---DVL~t-GlS~R--TN~eGa~~La~~f 87 (137)
+.|-|-...|..+|+ ++|+. |+.-+- .-.|+ ||+++ ..+.+ ++.+=.+.|++.+
T Consensus 9 ~DRpGLL~~i~~~l~-~~gl~-I~~AkI---sT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 9 ARKPGILLEAVQVLT-DLDLC-ITKAYI---SSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred CCcCCHHHHHHHHHH-HCCcE-EEEEEE---eecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 678899999999999 99988 754332 22333 66666 55555 7888888888776
No 35
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=1.1e+02 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=15.7
Q ss_pred ecCccccHHHHHH-HHHhCCC
Q psy958 70 GISKWTNEKGARA-VADSFPE 89 (137)
Q Consensus 70 GlS~RTN~eGa~~-La~~fp~ 89 (137)
+.|..|=+.|+++ |++.+|+
T Consensus 57 ~sS~~TLk~gIE~~L~~~i~e 77 (93)
T COG0694 57 PSSTVTLKNGIERQLKEEIPE 77 (93)
T ss_pred cccHHHHHHHHHHHHHHhCCc
Confidence 5888999999985 5666664
Done!