RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy958
         (137 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.064
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 13/133 (9%)

Query: 9   TRYSRSERFD-DHFIEKC-DKYLGNFI-Y-VDTVRAIIKKELRPPQVLDIEDEEAKLDGS 64
             Y+  + FD D  I    D+Y  + I + +  +    +  L     LD    E K+   
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 65  DVLFTGISKWTN-----EKGARAVADSFPEYP--CTAIK--VKNKNPKAKMSTSTGIDQL 115
              +       N     +     + D+ P+Y     AI   +         S  T + ++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

Query: 116 LVRTQVEMFLNDS 128
            +  + E    ++
Sbjct: 571 ALMAEDEAIFEEA 583



 Score = 26.7 bits (58), Expect = 2.7
 Identities = 6/94 (6%), Positives = 27/94 (28%), Gaps = 20/94 (21%)

Query: 2   LVPEYLGTRYSRSERFDDHFIEKCDKYLGNFI-----------YVDTVRAIIKKELR-PP 49
           ++ E +    +  + +     +K    + + +           +     ++       P 
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPT 389

Query: 50  QVLDI------EDEEAKLDGSDVLFTGISKWTNE 77
            +L +      + +   +      ++ + K   E
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.30
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 31/121 (25%)

Query: 19  DHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSD--------VLFTG 70
           + F     K +    ++  VR     E  P   L     E  L+ ++        +  + 
Sbjct: 290 ESFFVSVRKAITVLFFIG-VRC---YEAYPNTSLPPSILEDSLENNEGVPSPMLSI--SN 343

Query: 71  ISKWTNEKGARAVADSFPEYPCTAIKVKN--KN------PKA---------KMSTSTGID 113
           +++   +          P      I + N  KN      P++         K    +G+D
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403

Query: 114 Q 114
           Q
Sbjct: 404 Q 404


>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
           helix bundle domain, raction intermediate; HET: ARG;
           1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
          Length = 410

 Score = 27.5 bits (60), Expect = 1.8
 Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 9/66 (13%)

Query: 35  VDTVRAIIKKELRPPQV--LDIEDEEAKLDGSDVL-------FTGISKWTNEKGARAVAD 85
               R +     +            +  ++G DV          G+S+ T+ +    +A 
Sbjct: 184 TLFSRFVFSNHPKLINTPWYYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLLAK 243

Query: 86  SFPEYP 91
           +     
Sbjct: 244 NIVANK 249


>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer,
          alphavirus, receptor BI membrane fusion; HET: NAG NDG;
          2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B*
          3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
          Length = 401

 Score = 26.2 bits (57), Expect = 3.8
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 45 ELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTA 94
          E  P + L + ++     G   L       +  +   +  D+F  Y  T 
Sbjct: 24 EKEPEETLRMLEDNVMRPGYYQLLQASLTCSPHRQRESTKDNFNVYKATR 73


>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
          APC63807.2, N-terminal domain, saccharo dehydrogenase,
          PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
          Length = 118

 Score = 24.4 bits (53), Expect = 9.8
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 48 PPQVLDIEDEEA---KLDGSDVLFTGISKWTNEKGARAVADS 86
            + +D +DE      L G D + +    +     A+A   +
Sbjct: 51 ATKQVDAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAA 92


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,124,031
Number of extensions: 121641
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 9
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)