RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy958
         (137 letters)



>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
           [TaxId: 287]}
          Length = 412

 Score = 28.2 bits (62), Expect = 0.29
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 7/60 (11%)

Query: 51  VLDIEDEEAKLDGSDVLFT-------GISKWTNEKGARAVADSFPEYPCTAIKVKNKNPK 103
             D +   + L+G DV+         G+ + ++ +    VA S          +    PK
Sbjct: 208 DPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPK 267


>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 317

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 56  DEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTG---- 111
             + +  G D L  G S  T ++  + V             V  K  K KMS S G    
Sbjct: 228 GVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVIL 287

Query: 112 IDQLL 116
           +  L 
Sbjct: 288 LSDLY 292


>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second
          domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 115

 Score = 24.3 bits (53), Expect = 4.1
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 28 YLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLD 62
          + G+F+  +TV+   +       V+D+   E +  
Sbjct: 39 FYGSFL--ETVKNARR--WTRRTVIDVAKGEVRKG 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,199
Number of extensions: 22722
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 4
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.8 bits)