BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9580
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q47CM6|RL35_DECAR 50S ribosomal protein L35 OS=Dechloromonas aromatica (strain RCB)
GN=rpmI PE=3 SV=1
Length = 65
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 53/61 (86%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF IR GG IKRGQAFKRHILTKK+TKVKR LRG +VH+ + ASVRAMM
Sbjct: 3 KMKTKSSAKKRFSIRAGGSIKRGQAFKRHILTKKTTKVKRHLRGATAVHERDAASVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A4G617|RL35_HERAR 50S ribosomal protein L35 OS=Herminiimonas arsenicoxydans GN=rpmI
PE=3 SV=1
Length = 65
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 53/63 (84%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKS AKKRF +R GG +KRGQAFKRHILTKK+TK KR+LRG VH +N+ SVRAMM
Sbjct: 3 KMKTKSGAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRQLRGSVGVHDTNMVSVRAMM 62
Query: 69 PNS 71
PN+
Sbjct: 63 PNA 65
>sp|Q2KZL7|RL35_BORA1 50S ribosomal protein L35 OS=Bordetella avium (strain 197N)
GN=rpmI PE=3 SV=1
Length = 65
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R G IKRGQAFKRHILTKK+TK KR+LRG A+VH++NIASV+AMM
Sbjct: 3 KMKTKKSAAKRFQVRGSGSIKRGQAFKRHILTKKTTKNKRQLRGSAAVHETNIASVKAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q8XZ27|RL35_RALSO 50S ribosomal protein L35 OS=Ralstonia solanacearum (strain
GMI1000) GN=rpmI PE=3 SV=1
Length = 65
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF R GG IKRGQAFKRHILTKK+TK KR+LRG VH++N+ SVRAMM
Sbjct: 3 KMKTKKSASKRFTARPGGTIKRGQAFKRHILTKKTTKNKRQLRGTEGVHETNLKSVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A9IPU4|RL35_BORPD 50S ribosomal protein L35 OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=rpmI PE=3 SV=1
Length = 65
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R G IKRGQAFKRHILTKK+TK KR+LRG A+VH++N+ASV+AMM
Sbjct: 3 KMKTKKSASKRFQVRGSGSIKRGQAFKRHILTKKTTKNKRQLRGSAAVHETNVASVKAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q7VVR2|RL35_BORPE 50S ribosomal protein L35 OS=Bordetella pertussis (strain Tohama
I / ATCC BAA-589 / NCTC 13251) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R G IKRGQAFKRHILTKK+TK KR+LRG A+VH++N+ASV+AMM
Sbjct: 3 KMKTKKSAAKRFKVRGSGSIKRGQAFKRHILTKKTTKNKRQLRGSAAVHETNVASVKAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q7W7C9|RL35_BORPA 50S ribosomal protein L35 OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R G IKRGQAFKRHILTKK+TK KR+LRG A+VH++N+ASV+AMM
Sbjct: 3 KMKTKKSAAKRFKVRGSGSIKRGQAFKRHILTKKTTKNKRQLRGSAAVHETNVASVKAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q7WKR7|RL35_BORBR 50S ribosomal protein L35 OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R G IKRGQAFKRHILTKK+TK KR+LRG A+VH++N+ASV+AMM
Sbjct: 3 KMKTKKSAAKRFKVRGSGSIKRGQAFKRHILTKKTTKNKRQLRGSAAVHETNVASVKAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B2UGJ6|RL35_RALPJ 50S ribosomal protein L35 OS=Ralstonia pickettii (strain 12J)
GN=rpmI PE=3 SV=1
Length = 65
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 49/61 (80%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF R GG IKRGQAFKRHILTKK+TK KR LRG VH++N+ SVRAMM
Sbjct: 3 KMKTKKSASKRFTARPGGTIKRGQAFKRHILTKKTTKNKRHLRGTEGVHETNLKSVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|C5CUU4|RL35_VARPS 50S ribosomal protein L35 OS=Variovorax paradoxus (strain S110)
GN=rpmI PE=3 SV=1
Length = 67
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 52/62 (83%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH++N+ SV AM+
Sbjct: 3 KMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGAVAVHETNMVSVAAML 62
Query: 69 PN 70
P
Sbjct: 63 PG 64
>sp|Q2YBS4|RL35_NITMU 50S ribosomal protein L35 OS=Nitrosospira multiformis (strain
ATCC 25196 / NCIMB 11849) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKS A KRF +R GG +KR QAFKRHILTKK+TK KR+LRG +VH S++ASVRAMM
Sbjct: 3 KMKTKSGAAKRFTVRAGGTVKRSQAFKRHILTKKTTKSKRQLRGSVNVHFSDVASVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q0ADN6|RL35_NITEC 50S ribosomal protein L35 OS=Nitrosomonas eutropha (strain C91)
GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF IR GG IKR QAFKRHILTKK+TK KR+LRG+ VH S++ASVRAM+
Sbjct: 3 KMKTKKSAAKRFRIRAGGSIKRSQAFKRHILTKKTTKNKRQLRGMTVVHASDVASVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A4JDU6|RL35_BURVG 50S ribosomal protein L35 OS=Burkholderia vietnamiensis (strain
G4 / LMG 22486) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q2SVE0|RL35_BURTA 50S ribosomal protein L35 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpmI
PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q39H53|RL35_BURS3 50S ribosomal protein L35 OS=Burkholderia sp. (strain 383)
GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q63TM4|RL35_BURPS 50S ribosomal protein L35 OS=Burkholderia pseudomallei (strain
K96243) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B2JJJ5|RL35_BURP8 50S ribosomal protein L35 OS=Burkholderia phymatum (strain DSM
17167 / STM815) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A3N8T3|RL35_BURP6 50S ribosomal protein L35 OS=Burkholderia pseudomallei (strain
668) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q3JT11|RL35_BURP1 50S ribosomal protein L35 OS=Burkholderia pseudomallei (strain
1710b) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A3NUI6|RL35_BURP0 50S ribosomal protein L35 OS=Burkholderia pseudomallei (strain
1106a) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A1V3R1|RL35_BURMS 50S ribosomal protein L35 OS=Burkholderia mallei (strain SAVP1)
GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q62KI4|RL35_BURMA 50S ribosomal protein L35 OS=Burkholderia mallei (strain ATCC
23344) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A3MJU0|RL35_BURM7 50S ribosomal protein L35 OS=Burkholderia mallei (strain NCTC
10247) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B4E7I7|RL35_BURCJ 50S ribosomal protein L35 OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A0K6V2|RL35_BURCH 50S ribosomal protein L35 OS=Burkholderia cenocepacia (strain
HI2424) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B1K093|RL35_BURCC 50S ribosomal protein L35 OS=Burkholderia cenocepacia (strain
MC0-3) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q1BWV1|RL35_BURCA 50S ribosomal protein L35 OS=Burkholderia cenocepacia (strain AU
1054) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B1YP15|RL35_BURA4 50S ribosomal protein L35 OS=Burkholderia ambifaria (strain
MC40-6) GN=rpmI PE=3 SV=1
Length = 65
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGATAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A9C3D2|RL35_DELAS 50S ribosomal protein L35 OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=rpmI PE=3 SV=1
Length = 67
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R GG +KRGQAFKRHILTKK+TK KR LRG SVH++N+ S+ M+
Sbjct: 3 KMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGAVSVHETNMGSIAQML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q13WF9|RL35_BURXL 50S ribosomal protein L35 OS=Burkholderia xenovorans (strain
LB400) GN=rpmI PE=3 SV=1
Length = 65
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH S++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGSTAVHDSDLNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B2SZG0|RL35_BURPP 50S ribosomal protein L35 OS=Burkholderia phytofirmans (strain
DSM 17436 / PsJN) GN=rpmI PE=3 SV=1
Length = 65
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH +++ SVRAM+
Sbjct: 3 KMKTKKSAAKRFVVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGSTAVHDADMNSVRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A1W8I4|RL35_ACISJ 50S ribosomal protein L35 OS=Acidovorax sp. (strain JS42) GN=rpmI
PE=3 SV=1
Length = 67
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 53/63 (84%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R GG +KRGQAFKRHILTKK+TK KR LRG+ +VH+ ++ S+ M+
Sbjct: 3 KMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGIVNVHEGDMGSIAKML 62
Query: 69 PNS 71
P++
Sbjct: 63 PSA 65
>sp|B9MHY0|RL35_ACIET 50S ribosomal protein L35 OS=Acidovorax ebreus (strain TPSY)
GN=rpmI PE=3 SV=1
Length = 67
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 53/63 (84%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R GG +KRGQAFKRHILTKK+TK KR LRG+ +VH+ ++ S+ M+
Sbjct: 3 KMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGIVNVHEGDMGSIAKML 62
Query: 69 PNS 71
P++
Sbjct: 63 PSA 65
>sp|Q82VV3|RL35_NITEU 50S ribosomal protein L35 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=rpmI PE=3 SV=1
Length = 65
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG IKR QAFKRHILTKK+TK KR+LRG+A+VH S++ SVR M+
Sbjct: 3 KMKTKKSAAKRFKVRAGGSIKRSQAFKRHILTKKTTKNKRQLRGVAAVHASDMVSVRVML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q1LP78|RL35_RALME 50S ribosomal protein L35 OS=Ralstonia metallidurans (strain CH34
/ ATCC 43123 / DSM 2839) GN=rpmI PE=3 SV=1
Length = 65
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 48/61 (78%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF R G KRGQAFKRHILTKK+TK KR+LRG VH++N+ SVRAMM
Sbjct: 3 KMKTKKSASKRFTARPNGSFKRGQAFKRHILTKKTTKNKRQLRGTQDVHETNLKSVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B3R4J3|RL35_CUPTR 50S ribosomal protein L35 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rpmI PE=3 SV=1
Length = 65
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 48/61 (78%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF R G KRGQAFKRHILTKK+TK KR+LRG VH++N+ SVRAMM
Sbjct: 3 KMKTKKSASKRFTARPNGSFKRGQAFKRHILTKKTTKNKRQLRGTQDVHETNLKSVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q0KBZ1|RL35_CUPNH 50S ribosomal protein L35 OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=rpmI PE=3 SV=1
Length = 65
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 48/61 (78%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF R G KRGQAFKRHILTKK+TK KR+LRG VH++N+ SVRAMM
Sbjct: 3 KMKTKKSASKRFTARPNGSFKRGQAFKRHILTKKTTKNKRQLRGTQDVHETNLKSVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A1TR37|RL35_ACIAC 50S ribosomal protein L35 OS=Acidovorax citrulli (strain AAC00-1)
GN=rpmI PE=3 SV=1
Length = 67
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R GG +KRGQAFKRHILTKK+TK KR LRG SVH++N+ + M+
Sbjct: 3 KMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGAVSVHETNMGHMAQML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B1XYZ5|RL35_LEPCP 50S ribosomal protein L35 OS=Leptothrix cholodnii (strain ATCC
51168 / LMG 8142 / SP-6) GN=rpmI PE=3 SV=1
Length = 67
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH++N+ + M+
Sbjct: 3 KMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGTVAVHETNMGHIAQML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|B1XV12|RL35_POLNS 50S ribosomal protein L35 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rpmI PE=3 SV=1
Length = 65
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+K+KSSAK RF +R GG IKRGQAFKRHILTKK+TK KR LRG A V K++I S+R+M+
Sbjct: 3 KMKSKSSAKMRFSVRAGGTIKRGQAFKRHILTKKTTKNKRHLRGSAEVAKADIKSIRSML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q472N6|RL35_CUPPJ 50S ribosomal protein L35 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rpmI PE=3 SV=1
Length = 65
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 47/61 (77%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF R G KRGQAFKRHILTKK+TK KR LRG VH++N+ SVRAMM
Sbjct: 3 KMKTKKSASKRFTARPNGSFKRGQAFKRHILTKKTTKNKRHLRGTQDVHETNLKSVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A1WMG7|RL35_VEREI 50S ribosomal protein L35 OS=Verminephrobacter eiseniae (strain
EF01-2) GN=rpmI PE=3 SV=1
Length = 67
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R GG +KRGQAFKRHILTK +T+ KR LRG +VH++N+ S+ M+
Sbjct: 3 KMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKMTTRNKRHLRGTVAVHETNMGSMAQML 62
Query: 69 PNS 71
P +
Sbjct: 63 PGA 65
>sp|A2SH05|RL35_METPP 50S ribosomal protein L35 OS=Methylibium petroleiphilum (strain
PM1) GN=rpmI PE=3 SV=1
Length = 67
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTK SA KRF +R GG +KRGQAFKRHILTKKSTK KR LRG A+VH++N+ + M+
Sbjct: 3 KMKTKKSAAKRFRVRPGGTVKRGQAFKRHILTKKSTKNKRHLRGTATVHETNMGHMAQML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q12BR1|RL35_POLSJ 50S ribosomal protein L35 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rpmI PE=3 SV=1
Length = 67
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKS AKKRF +R GG +KRGQAFKRHILTKK+TK KR LRG +VH++N+ + M+
Sbjct: 3 KMKTKSGAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGAVTVHETNMGHMAQML 62
Query: 69 PNS 71
P
Sbjct: 63 PGQ 65
>sp|A1VR75|RL35_POLNA 50S ribosomal protein L35 OS=Polaromonas naphthalenivorans
(strain CJ2) GN=rpmI PE=3 SV=1
Length = 67
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 50/62 (80%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKS AKKRF +R GG +KRGQAFKRHILTKK+TK KR+LRG +VH++N+ + M+
Sbjct: 3 KMKTKSGAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRQLRGSVAVHETNMGHMAQML 62
Query: 69 PN 70
P
Sbjct: 63 PG 64
>sp|A1K4E3|RL35_AZOSB 50S ribosomal protein L35 OS=Azoarcus sp. (strain BH72) GN=rpmI
PE=3 SV=1
Length = 65
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF +R+ G IKR QAFKRHILTKK+TK KR+LRG+ VH S+ +RAM+
Sbjct: 3 KMKTKSSAKKRFKVRSSGGIKRSQAFKRHILTKKTTKSKRQLRGMTEVHASDEKLIRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q21YT1|RL35_RHOFD 50S ribosomal protein L35 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=rpmI PE=3 SV=2
Length = 67
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 51/62 (82%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKS+AKKRF +R GG +KRGQAFKRHILTKK+TK KR+LRG +VH++++ + M+
Sbjct: 3 KMKTKSAAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRQLRGSTAVHETDMGRMSQML 62
Query: 69 PN 70
P
Sbjct: 63 PG 64
>sp|Q7NYC4|RL35_CHRVO 50S ribosomal protein L35 OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=rpmI PE=3 SV=1
Length = 65
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 48/61 (78%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKR + GG KR AFKRHILTKK+TK KR+LRG + V +N+ASVRAMM
Sbjct: 3 KMKTKSSAKKRLKVLGGGGFKRAHAFKRHILTKKTTKNKRQLRGTSMVDATNVASVRAMM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|Q5P7X7|RL35_AROAE 50S ribosomal protein L35 OS=Aromatoleum aromaticum (strain EbN1)
GN=rpmI PE=3 SV=1
Length = 65
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKS A KRF +R G IKR QAFKRHILTKK+TK KR+LRG+ VH ++ +RAM+
Sbjct: 3 KMKTKSGAAKRFKVRASGGIKRSQAFKRHILTKKTTKSKRQLRGMTGVHAADEKLIRAML 62
Query: 69 P 69
P
Sbjct: 63 P 63
>sp|A4SX35|RL35_POLSQ 50S ribosomal protein L35 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rpmI PE=3 SV=1
Length = 65
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 19 RFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMMP 69
RF +R GG IKRGQAFKRHILTKK+TK KR LRG V K+++ S+R+M+P
Sbjct: 13 RFTVRAGGTIKRGQAFKRHILTKKTTKNKRHLRGSTEVAKADVKSIRSMLP 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.131 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,812,299
Number of Sequences: 539616
Number of extensions: 521635
Number of successful extensions: 2660
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 760
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)