Query psy9580
Match_columns 71
No_of_seqs 115 out of 953
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:18:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_8 50S ribosomal protein L 100.0 1.7E-33 5.8E-38 167.9 5.1 65 7-71 1-65 (65)
2 2zjr_3 50S ribosomal protein L 100.0 3.6E-33 1.2E-37 166.9 5.4 65 7-71 1-65 (66)
3 3r8s_3 50S ribosomal protein L 100.0 5.6E-32 1.9E-36 160.8 6.4 64 8-71 1-64 (64)
4 3bbo_5 Ribosomal protein L35; 99.9 2.8E-29 9.6E-34 170.5 0.2 67 5-71 87-153 (159)
5 3c8l_A FTSZ-like protein of un 13.1 81 0.0028 20.0 1.4 13 59-71 68-80 (122)
6 2loj_A Putative cytoplasmic pr 8.0 1.5E+02 0.0051 16.7 1.1 17 13-29 44-60 (63)
7 3u5c_f 40S ribosomal protein S 7.7 1.9E+02 0.0066 18.2 1.7 19 14-32 100-118 (152)
8 2jra_A Protein RPA2121; domain 7.1 1.8E+02 0.0061 16.6 1.2 17 13-29 48-64 (67)
9 3u5c_Z RP45, S31, YS23, 40S ri 6.5 87 0.003 19.4 -0.4 17 9-25 58-74 (108)
10 3bid_A UPF0339 protein NMB1088 6.2 2.4E+02 0.0083 15.5 1.4 14 17-30 12-26 (64)
No 1
>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...
Probab=99.98 E-value=1.7e-33 Score=167.85 Aligned_cols=65 Identities=28% Similarity=0.296 Sum_probs=63.5
Q ss_pred CcCcccCcccccceeecCCccEEeeccCcccccCCCChHHHHhhcCCeeeccCcHHHHHhhCCCC
Q psy9580 7 VFKIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMMPNS 71 (71)
Q Consensus 7 mpKmKT~k~aaKRFk~T~sGk~kr~~ag~~H~~~~Ks~krkR~Lrk~~~v~~~~~k~ik~llpy~ 71 (71)
|||||||+||+|||++||||+|+|++||++|++++||++++|+|++..+|+++|++.|++||||+
T Consensus 1 MPKmKT~~ga~KRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~~~d~k~vk~lLpy~ 65 (65)
T 3v2d_8 1 MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPYE 65 (65)
T ss_dssp -CCCCCCHHHHTTEEECTTSCEEEECSSCSSCCTTSCHHHHHHTTSEEECCHHHHHHHHHTCTTC
T ss_pred CCCcccchhhhheeEEcCCCCEEeccCCCCCCccCCCHHHHHhcCCCEEECHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999996
No 2
>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3 3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3* 1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5 1vou_5 1vow_5 ...
Probab=99.98 E-value=3.6e-33 Score=166.93 Aligned_cols=65 Identities=29% Similarity=0.243 Sum_probs=64.3
Q ss_pred CcCcccCcccccceeecCCccEEeeccCcccccCCCChHHHHhhcCCeeeccCcHHHHHhhCCCC
Q psy9580 7 VFKIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMMPNS 71 (71)
Q Consensus 7 mpKmKT~k~aaKRFk~T~sGk~kr~~ag~~H~~~~Ks~krkR~Lrk~~~v~~~~~k~ik~llpy~ 71 (71)
|||||||+||+|||++||||+|+|++||++|++++||++++|+|+++.+|+++|++.|++||||+
T Consensus 1 MPKmKT~~gaaKRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~~~d~k~ik~lLp~~ 65 (66)
T 2zjr_3 1 MPKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKLMLPRG 65 (66)
T ss_pred CCCcccchhhhheeEEcCCCcEEeccCCCccCcccCCHHHHHhcCCCeeECHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999995
No 3
>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3 2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...
Probab=99.97 E-value=5.6e-32 Score=160.80 Aligned_cols=64 Identities=47% Similarity=0.479 Sum_probs=63.3
Q ss_pred cCcccCcccccceeecCCccEEeeccCcccccCCCChHHHHhhcCCeeeccCcHHHHHhhCCCC
Q psy9580 8 FKIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMMPNS 71 (71)
Q Consensus 8 pKmKT~k~aaKRFk~T~sGk~kr~~ag~~H~~~~Ks~krkR~Lrk~~~v~~~~~k~ik~llpy~ 71 (71)
||||||+||+|||++||||+|+|++||++|++++||++++|+|++..+|+++|++.|++||||+
T Consensus 1 PKmKT~~~a~KRFk~TgsGKikr~~a~k~H~l~kKs~krkR~Lr~~~~v~~~d~k~vk~lLpy~ 64 (64)
T 3r8s_3 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA 64 (64)
T ss_dssp CCCCCCTTTTTTCEECSSSCEEEECSSCSSSCTTSCHHHHHHTSSEEECCTTTHHHHHHHCTTC
T ss_pred CCCccchhhhheeEEcCCCCEEeccCCCCCCccCCCHHHHHhcCCCEEECHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999996
No 4
>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.94 E-value=2.8e-29 Score=170.47 Aligned_cols=67 Identities=36% Similarity=0.476 Sum_probs=61.8
Q ss_pred ccCcCcccCcccccceeecCCccEEeeccCcccccCCCChHHHHhhcCCeeeccCcHHHHHhhCCCC
Q psy9580 5 FSVFKIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMMPNS 71 (71)
Q Consensus 5 ~~mpKmKT~k~aaKRFk~T~sGk~kr~~ag~~H~~~~Ks~krkR~Lrk~~~v~~~~~k~ik~llpy~ 71 (71)
..|||||||+||+|||++||+|+|+|++||++|++++||++++|+||++.+|+++|++.|++||||+
T Consensus 87 ~~MPKMKThsgAaKRFKvTgSGKiKR~kAgkrHiLtkKS~KrKR~LRk~~~V~~aD~k~IKrlLPy~ 153 (159)
T 3bbo_5 87 AKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYL 153 (159)
T ss_dssp ----CCCCCHHHHTTCCBCSSSCBEEECSSCTTCCSSCCSSCTTSCSEEECCSTHHHHTTTTTTTC-
T ss_pred cCCcccccchhhhheeEEcCCccEEeccCCCCCCcCcCCHHHHHhcCCCeeECHHHHHHHHHhcCcc
Confidence 3599999999999999999999999999999999999999999999999999999999999999995
No 5
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=13.06 E-value=81 Score=20.00 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=11.2
Q ss_pred CcHHHHHhhCCCC
Q psy9580 59 SNIASVRAMMPNS 71 (71)
Q Consensus 59 ~~~k~ik~llpy~ 71 (71)
-|...|+..|||+
T Consensus 68 vD~e~v~a~lPyG 80 (122)
T 3c8l_A 68 VREEEVLAVLPFG 80 (122)
T ss_dssp CCHHHHHTTSCSS
T ss_pred cCHHHHHhhCCCC
Confidence 4789999999996
No 6
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=7.99 E-value=1.5e+02 Score=16.75 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=11.7
Q ss_pred CcccccceeecCCccEE
Q psy9580 13 KSSAKKRFFIRTGGVIK 29 (71)
Q Consensus 13 ~k~aaKRFk~T~sGk~k 29 (71)
|-|.-=|.++|..||+-
T Consensus 44 H~G~~Y~LR~Tr~GKLI 60 (63)
T 2loj_A 44 HNGQEYLLRKTQAGKLL 60 (63)
T ss_dssp ETTEEEEEEEETTTEEE
T ss_pred eCCeEEEeEEccCCcee
Confidence 34455578889999863
No 7
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=7.70 E-value=1.9e+02 Score=18.17 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=15.1
Q ss_pred cccccceeecCCccEEeec
Q psy9580 14 SSAKKRFFIRTGGVIKRGQ 32 (71)
Q Consensus 14 k~aaKRFk~T~sGk~kr~~ 32 (71)
=++-+-|++.++|+|.+-+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~ 118 (152)
T 3u5c_f 100 XXVLSYYKVDAEGKVTKLR 118 (152)
T ss_dssp CCCCCCSEECSSSCEECCS
T ss_pred cceeeEEEEccCCeEEECc
Confidence 3567889999999998653
No 8
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=7.12 E-value=1.8e+02 Score=16.63 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=11.8
Q ss_pred CcccccceeecCCccEE
Q psy9580 13 KSSAKKRFFIRTGGVIK 29 (71)
Q Consensus 13 ~k~aaKRFk~T~sGk~k 29 (71)
|-+.-=|.++|..||+-
T Consensus 48 H~G~~Y~LR~Tr~GKLI 64 (67)
T 2jra_A 48 HGDDRYRLRLTSQNKLI 64 (67)
T ss_dssp ETTEEEEEEECTTSCEE
T ss_pred eCCeEEEeEEccCCcee
Confidence 34445578899999863
No 9
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=6.48 E-value=87 Score=19.43 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=14.7
Q ss_pred CcccCcccccceeecCC
Q psy9580 9 KIKTKSSAKKRFFIRTG 25 (71)
Q Consensus 9 KmKT~k~aaKRFk~T~s 25 (71)
|+=|-..++.||+|++|
T Consensus 58 KlITpsvlseRlkI~gS 74 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKIGGS 74 (108)
T ss_dssp SSBSHHHHHHTTCCCTT
T ss_pred eEEeHHHhhhhhhhhHH
Confidence 55589999999999987
No 10
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=6.17 E-value=2.4e+02 Score=15.46 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=9.8
Q ss_pred ccceeecC-CccEEe
Q psy9580 17 KKRFFIRT-GGVIKR 30 (71)
Q Consensus 17 aKRFk~T~-sGk~kr 30 (71)
.=||++.+ +|.|.-
T Consensus 12 ~frfrLka~NGevI~ 26 (64)
T 3bid_A 12 EYRWRLKAANHEIIA 26 (64)
T ss_dssp CEEEEEECTTSCEEE
T ss_pred CEEEEEEeCCCCEEE
Confidence 45788877 777665
Done!