Your job contains 1 sequence.
>psy9580
MKELFSVFKIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSN
IASVRAMMPNS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9580
(71 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|ECH_0198 - symbol:ECH_0198 "ribosomal protein L3... 125 4.2e-08 1
TIGR_CMR|VC_A0289 - symbol:VC_A0289 "ribosomal protein L3... 124 5.3e-08 1
TIGR_CMR|SPO_3599 - symbol:SPO_3599 "ribosomal protein L3... 123 6.8e-08 1
TIGR_CMR|CJE_0294 - symbol:CJE_0294 "ribosomal protein L3... 119 1.8e-07 1
TIGR_CMR|APH_0061 - symbol:APH_0061 "ribosomal protein L3... 117 2.9e-07 1
TIGR_CMR|CBU_1324 - symbol:CBU_1324 "ribosomal protein L3... 116 3.8e-07 1
UNIPROTKB|P0A7Q1 - symbol:rpmI "50S ribosomal subunit pro... 115 4.8e-07 1
TIGR_CMR|SO_2301 - symbol:SO_2301 "ribosomal protein L35"... 115 4.8e-07 1
TIGR_CMR|CHY_1577 - symbol:CHY_1577 "ribosomal protein L3... 113 7.8e-07 1
TIGR_CMR|GSU_1517 - symbol:GSU_1517 "ribosomal protein L3... 113 7.8e-07 1
TIGR_CMR|CPS_2907 - symbol:CPS_2907 "ribosomal protein L3... 112 1.0e-06 1
TIGR_CMR|BA_4818 - symbol:BA_4818 "ribosomal protein L35"... 110 1.6e-06 1
TIGR_CMR|NSE_0214 - symbol:NSE_0214 "ribosomal protein L3... 106 4.3e-06 1
TAIR|locus:2061441 - symbol:PRPL35 "plastid ribosomal pro... 98 3.0e-05 1
TIGR_CMR|DET_0751 - symbol:DET_0751 "ribosomal protein L3... 93 0.00010 1
>TIGR_CMR|ECH_0198 [details] [associations]
symbol:ECH_0198 "ribosomal protein L35" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001706 InterPro:IPR018265 InterPro:IPR021137
Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936 HAMAP:MF_00514
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0291 HOGENOM:HOG000040109 KO:K02916
OMA:RFKFTAT ProtClustDB:PRK00172 TIGRFAMs:TIGR00001
RefSeq:YP_507022.1 ProteinModelPortal:Q2GHR1 STRING:Q2GHR1
GeneID:3927705 KEGG:ech:ECH_0198 PATRIC:20575933
BioCyc:ECHA205920:GJNR-198-MONOMER Uniprot:Q2GHR1
Length = 66
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSS KKRF + G IK Q+ KRH +TK+S + R RG A ++ S+ V+ M
Sbjct: 3 KLKTKSSVKKRFSVTATGKIKSTQSAKRHGMTKRSKRSIRVQRGTAIMNSSDSRIVKLFM 62
Query: 69 PNS 71
P S
Sbjct: 63 PYS 65
>TIGR_CMR|VC_A0289 [details] [associations]
symbol:VC_A0289 "ribosomal protein L35" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001706 InterPro:IPR018265
InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936
HAMAP:MF_00514 GO:GO:0006412 GO:GO:0005840 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0003735 EMBL:AF055586 EMBL:AF179591
eggNOG:COG0291 KO:K02916 ProtClustDB:PRK00172 TIGRFAMs:TIGR00001
OMA:HSHLRHI PIR:A82476 RefSeq:NP_232685.1 ProteinModelPortal:O68845
SMR:O68845 DNASU:2611984 GeneID:2611984 KEGG:vch:VCA0289
PATRIC:20085145 Uniprot:O68845
Length = 64
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 30/61 (49%), Positives = 39/61 (63%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+K A KRF +T G IK A KRHILTK++TK KR+LR A + K +A+V M+
Sbjct: 3 KMKNNKGAAKRFK-KTAGGIKYKHATKRHILTKRTTKNKRQLRPNAILPKCELAAVARML 61
Query: 69 P 69
P
Sbjct: 62 P 62
>TIGR_CMR|SPO_3599 [details] [associations]
symbol:SPO_3599 "ribosomal protein L35" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001706 InterPro:IPR018265 InterPro:IPR021137
Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936 HAMAP:MF_00514
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0291 HOGENOM:HOG000040109 KO:K02916
OMA:RFKFTAT ProtClustDB:PRK00172 TIGRFAMs:TIGR00001
RefSeq:YP_168794.1 ProteinModelPortal:Q5LMG4 GeneID:3196240
KEGG:sil:SPO3599 PATRIC:23380675 Uniprot:Q5LMG4
Length = 66
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF + G + GQA KRH + K++TK R RG ++ + V+ M
Sbjct: 3 KMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRTTKFIRDARGTTTLSAPDAKIVKGYM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>TIGR_CMR|CJE_0294 [details] [associations]
symbol:CJE_0294 "ribosomal protein L35" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001706 InterPro:IPR018265
InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936
HAMAP:MF_00514 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 eggNOG:COG0291 KO:K02916
ProtClustDB:PRK00172 TIGRFAMs:TIGR00001 HOGENOM:HOG000040108
RefSeq:YP_178315.1 ProteinModelPortal:Q5HWM0 STRING:Q5HWM0
GeneID:3231056 KEGG:cjr:CJE0294 PATRIC:20042288 OMA:PSKRMRD
BioCyc:CJEJ195099:GJC0-299-MONOMER Uniprot:Q5HWM0
Length = 63
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+K+ SA KRF + IKRG AF+ HILTKK K R LR VH +N+ +V M+
Sbjct: 3 KMKSVKSAVKRFKVGKNK-IKRGSAFRSHILTKKPAKRMRDLRTAKYVHSTNVKAVEKML 61
>TIGR_CMR|APH_0061 [details] [associations]
symbol:APH_0061 "ribosomal protein L35" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001706 InterPro:IPR018265 InterPro:IPR021137
Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936 HAMAP:MF_00514
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR RefSeq:YP_504694.1
ProteinModelPortal:Q2GLQ7 STRING:Q2GLQ7 GeneID:3931107
KEGG:aph:APH_0061 PATRIC:20948674 eggNOG:COG0291
HOGENOM:HOG000040109 KO:K02916 OMA:RFKFTAT ProtClustDB:PRK00172
BioCyc:APHA212042:GHPM-99-MONOMER TIGRFAMs:TIGR00001 Uniprot:Q2GLQ7
Length = 66
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KTKSSAKKRF I G + Q+ KRH +TK+S + R RG A + ++ V M
Sbjct: 3 KLKTKSSAKKRFKITASGKVVAAQSTKRHGMTKRSKRSLRTRRGTALMSAADTRIVAPFM 62
Query: 69 P 69
P
Sbjct: 63 P 63
>TIGR_CMR|CBU_1324 [details] [associations]
symbol:CBU_1324 "ribosomal protein L35" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001706 InterPro:IPR018265
InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936
HAMAP:MF_00514 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 KO:K02916
ProtClustDB:PRK00172 TIGRFAMs:TIGR00001 HOGENOM:HOG000040108
OMA:HSHLRHI RefSeq:NP_820314.1 ProteinModelPortal:Q83C12
GeneID:1209230 KEGG:cbu:CBU_1324 PATRIC:17931383 eggNOG:NOG87922
BioCyc:CBUR227377:GJ7S-1315-MONOMER Uniprot:Q83C12
Length = 64
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KT A KRF + G IKR + HILTKKS K KR+LR + V S++ +V M+
Sbjct: 3 KLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKIHEVAPSDMRAVSEML 62
>UNIPROTKB|P0A7Q1 [details] [associations]
symbol:rpmI "50S ribosomal subunit protein L35"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA] InterPro:IPR001706 InterPro:IPR018265
InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936
HAMAP:MF_00514 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003735 PDB:2VHM
PDBsum:2VHM PDB:2RDO PDBsum:2RDO GO:GO:0022625 EMBL:V00291 PDB:3J0T
PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS
PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12
PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1VS6 PDB:1VS8 PDB:1VT2
PDB:2AW4 PDB:2AWB PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM PDB:2QAO
PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK PDB:2QOV
PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L PDB:2Z4N
PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM
PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG
PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ
PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N
PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK
PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20
PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19
PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD
PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB
PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX
PDBsum:3BBX eggNOG:COG0291 KO:K02916 ProtClustDB:PRK00172
TIGRFAMs:TIGR00001 HOGENOM:HOG000040108 OMA:HSHLRHI PIR:E64930
RefSeq:NP_416232.3 RefSeq:YP_489979.1 ProteinModelPortal:P0A7Q1
SMR:P0A7Q1 IntAct:P0A7Q1 PRIDE:P0A7Q1
EnsemblBacteria:EBESCT00000000706 EnsemblBacteria:EBESCT00000000707
EnsemblBacteria:EBESCT00000000708 EnsemblBacteria:EBESCT00000018199
GeneID:12933937 GeneID:946349 KEGG:ecj:Y75_p1692 KEGG:eco:b1717
PATRIC:32118738 EchoBASE:EB1213 EcoGene:EG11231
BioCyc:EcoCyc:EG11231-MONOMER BioCyc:ECOL316407:JW1707-MONOMER
EvolutionaryTrace:P0A7Q1 Genevestigator:P0A7Q1 Uniprot:P0A7Q1
Length = 65
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 32/62 (51%), Positives = 37/62 (59%)
Query: 9 KIKTKSSAKKRFFIRTG-GVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAM 67
KIKT A KRF +TG G K A RHILTKK+TK KR LR A V K ++ V A
Sbjct: 3 KIKTVRGAAKRFK-KTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIAC 61
Query: 68 MP 69
+P
Sbjct: 62 LP 63
>TIGR_CMR|SO_2301 [details] [associations]
symbol:SO_2301 "ribosomal protein L35" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001706 InterPro:IPR018265 InterPro:IPR021137
Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936 HAMAP:MF_00514
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 eggNOG:COG0291 KO:K02916 ProtClustDB:PRK00172
TIGRFAMs:TIGR00001 HOGENOM:HOG000040108 OMA:HSHLRHI
RefSeq:NP_717897.1 ProteinModelPortal:Q8EER7 SMR:Q8EER7
GeneID:1170026 KEGG:son:SO_2301 PATRIC:23524225 Uniprot:Q8EER7
Length = 64
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/61 (45%), Positives = 35/61 (57%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KT KRF +T KR QA RHILTKKSTK KR LR V K ++ ++ +
Sbjct: 3 KMKTDRGVAKRFK-KTANGFKRKQAHLRHILTKKSTKRKRHLRNKCLVAKVDVPAIARQL 61
Query: 69 P 69
P
Sbjct: 62 P 62
>TIGR_CMR|CHY_1577 [details] [associations]
symbol:CHY_1577 "ribosomal protein L35" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001706 InterPro:IPR018265
InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936
HAMAP:MF_00514 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02916
TIGRFAMs:TIGR00001 HOGENOM:HOG000040108 OMA:HSHLRHI
RefSeq:YP_360406.1 ProteinModelPortal:Q3ABS8 STRING:Q3ABS8
GeneID:3727478 KEGG:chy:CHY_1577 PATRIC:21276279 eggNOG:NOG288395
BioCyc:CHYD246194:GJCN-1576-MONOMER Uniprot:Q3ABS8
Length = 64
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 9 KIKTKSSAKKRFFIRTG-GVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAM 67
KIKTK +A KRF +TG G +K AF H+L K++K KR+LR A V K ++ ++ +
Sbjct: 3 KIKTKKAAAKRFK-KTGSGKVKHFHAFHSHLLGHKTSKRKRRLRKSAIVSKGDMKIIKKI 61
Query: 68 MP 69
+P
Sbjct: 62 LP 63
>TIGR_CMR|GSU_1517 [details] [associations]
symbol:GSU_1517 "ribosomal protein L35" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001706
InterPro:IPR018265 InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064
PROSITE:PS00936 HAMAP:MF_00514 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
eggNOG:COG0291 KO:K02916 ProtClustDB:PRK00172 TIGRFAMs:TIGR00001
HOGENOM:HOG000040108 OMA:HSHLRHI RefSeq:NP_952568.1
ProteinModelPortal:Q74D02 GeneID:2687185 KEGG:gsu:GSU1517
PATRIC:22025875 BioCyc:GSUL243231:GH27-1500-MONOMER Uniprot:Q74D02
Length = 65
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 31/60 (51%), Positives = 37/60 (61%)
Query: 9 KIKTKSSAKKRFFIRTG-GVIKRGQAFKRHILTKKSTKVKRKLRG---LASVHKSNIASV 64
KIKT A KRF +TG G IKR AF HILT K+ K KR+LR +A+V NIA +
Sbjct: 3 KIKTNRGAAKRFK-KTGTGKIKRSHAFTSHILTSKTRKRKRQLRSSAVVAAVDHKNIAKL 61
>TIGR_CMR|CPS_2907 [details] [associations]
symbol:CPS_2907 "ribosomal protein L35" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001706 InterPro:IPR018265 InterPro:IPR021137
Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936 HAMAP:MF_00514
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 eggNOG:COG0291 KO:K02916 TIGRFAMs:TIGR00001
HOGENOM:HOG000040108 RefSeq:YP_269608.1 ProteinModelPortal:Q480B1
STRING:Q480B1 GeneID:3522237 KEGG:cps:CPS_2907 PATRIC:21468839
BioCyc:CPSY167879:GI48-2957-MONOMER Uniprot:Q480B1
Length = 64
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KT A KRF +T K QA RHILTK+ TKVKR LR + S+I SV+ ++
Sbjct: 3 KMKTNKGAAKRFK-KTASGYKFKQAGLRHILTKRRTKVKRHLRAKCMIAASDIKSVKKLL 61
>TIGR_CMR|BA_4818 [details] [associations]
symbol:BA_4818 "ribosomal protein L35" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001706 InterPro:IPR018265 InterPro:IPR021137
Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936 HAMAP:MF_00514
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0291 KO:K02916
ProtClustDB:PRK00172 TIGRFAMs:TIGR00001 RefSeq:NP_847021.1
RefSeq:YP_021464.1 RefSeq:YP_030717.1 ProteinModelPortal:Q81L16
DNASU:1083956 EnsemblBacteria:EBBACT00000012081
EnsemblBacteria:EBBACT00000018076 EnsemblBacteria:EBBACT00000022549
GeneID:1083956 GeneID:2815695 GeneID:2851581 KEGG:ban:BA_4818
KEGG:bar:GBAA_4818 KEGG:bat:BAS4470 HOGENOM:HOG000040108
OMA:HSHLRHI BioCyc:BANT260799:GJAJ-4527-MONOMER
BioCyc:BANT261594:GJ7F-4680-MONOMER Uniprot:Q81L16
Length = 66
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 9 KIKTKSSAKKRFFIRTG-GVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAM 67
K KT A KRF +TG G +KR A+ H+ KSTK KRKLR V + +R M
Sbjct: 3 KQKTHRGAAKRFK-KTGSGKLKRSHAYTSHLFANKSTKAKRKLRKAGVVSAGDFKRIRQM 61
Query: 68 MPN 70
+ N
Sbjct: 62 LDN 64
>TIGR_CMR|NSE_0214 [details] [associations]
symbol:NSE_0214 "ribosomal protein L35" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001706 InterPro:IPR018265 InterPro:IPR021137
Pfam:PF01632 PRINTS:PR00064 PROSITE:PS00936 HAMAP:MF_00514
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000237
GenomeReviews:CP000237_GR HOGENOM:HOG000040109 KO:K02916
RefSeq:YP_506109.1 ProteinModelPortal:Q2GEI7 STRING:Q2GEI7
GeneID:3932075 KEGG:nse:NSE_0214 PATRIC:22680527 eggNOG:NOG312056
ProtClustDB:CLSK2528203 BioCyc:NSEN222891:GHFU-245-MONOMER
Uniprot:Q2GEI7
Length = 66
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KT SSAKKRF + + G + Q+ KRH + K++ ++ +G + KS + +R++M
Sbjct: 3 KLKTNSSAKKRFKVTSTGKVMVTQSGKRHNMRKRNKRMLLVQKGYTLISKSKMRLMRSVM 62
Query: 69 PNS 71
P S
Sbjct: 63 PYS 65
>TAIR|locus:2061441 [details] [associations]
symbol:PRPL35 "plastid ribosomal protein L35"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] InterPro:IPR001706
InterPro:IPR018265 InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064
PROSITE:PS00936 HAMAP:MF_00514 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
TIGRFAMs:TIGR00001 EMBL:AY065235 EMBL:AY096532 IPI:IPI00529006
RefSeq:NP_850047.1 UniGene:At.24054 ProteinModelPortal:Q8VZ55
SMR:Q8VZ55 IntAct:Q8VZ55 STRING:Q8VZ55 PRIDE:Q8VZ55
EnsemblPlants:AT2G24090.1 GeneID:816943 KEGG:ath:AT2G24090
TAIR:At2g24090 HOGENOM:HOG000012818 InParanoid:Q8VZ55 OMA:LSKMTEV
PhylomeDB:Q8VZ55 ProtClustDB:CLSN2690889 Genevestigator:Q8VZ55
Uniprot:Q8VZ55
Length = 145
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 8 FKIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAM 67
+K+KT ++ KRF + G I R ++ K+H+L KK+ K K +L + V++S+ +V
Sbjct: 75 YKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGA 134
Query: 68 MP 69
+P
Sbjct: 135 LP 136
>TIGR_CMR|DET_0751 [details] [associations]
symbol:DET_0751 "ribosomal protein L35" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001706 InterPro:IPR021137 Pfam:PF01632 PRINTS:PR00064
PROSITE:PS00936 HAMAP:MF_00514 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0291 KO:K02916 ProtClustDB:PRK00172 TIGRFAMs:TIGR00001
HOGENOM:HOG000040108 RefSeq:YP_181485.1 ProteinModelPortal:Q3Z8G4
STRING:Q3Z8G4 GeneID:3229941 KEGG:det:DET0751 PATRIC:21608563
OMA:KNKSHSG BioCyc:DETH243164:GJNF-752-MONOMER Uniprot:Q3Z8G4
Length = 67
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 9 KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
K+KT+ +A KRF + G I R + K H+ KS +V+R+ ++ V + A ++ ++
Sbjct: 3 KMKTRKTAAKRFHVTGTGKIMRSKGMKSHLRRNKSARVRRQFDEMSQVAGVDRARIQKLI 62
Query: 69 P 69
P
Sbjct: 63 P 63
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.131 0.348 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 71 71 0.00091 102 3 10 22 0.39 28
29 0.42 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 443 (47 KB)
Total size of DFA: 84 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.12u 0.08s 10.20t Elapsed: 00:00:49
Total cpu time: 10.12u 0.08s 10.20t Elapsed: 00:00:49
Start: Thu Aug 15 13:44:37 2013 End: Thu Aug 15 13:45:26 2013