RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9580
         (71 letters)



>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia
          coli [TaxId: 562]}
          Length = 64

 Score = 56.2 bits (136), Expect = 2e-13
 Identities = 30/63 (47%), Positives = 35/63 (55%)

Query: 9  KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
          KIKT   A KRF     G  K   A  RHILTKK+TK KR LR  A V K ++  V A +
Sbjct: 2  KIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACL 61

Query: 69 PNS 71
          P +
Sbjct: 62 PYA 64


>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus
          thermophilus [TaxId: 274]}
          Length = 64

 Score = 56.2 bits (136), Expect = 2e-13
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 9  KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
          K+KT   AKKR  I   G +   +  KRH+  +KS K  R+      + K     ++ ++
Sbjct: 2  KMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLL 61

Query: 69 P 69
          P
Sbjct: 62 P 62


>gi|94984680|ref|YP_604044.1|(2-62:67) 50S ribosomal protein L35
          [Deinococcus geothermalis DSM 11300] 
          gi|145572732|sp|Q1J0V9.1|RL35_DEIGD RecName: Full=50S
          ribosomal protein L35   gi|94554961|gb|ABF44875.1|
          ribosomal protein L35 [Deinococcus geothermalis DSM
          11300]  E=4e-21 s/c=1.69 id=84% cov=98%
          Length = 61

 Score = 51.2 bits (123), Expect = 2e-11
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 9  KIKTKSSAKKRFFIRTGGVIKRGQAFKRHILTKKSTKVKRKLRGLASVHKSNIASVRAMM 68
          K+KTK S  +R  +   G +   ++ KRH  T KS    R       + KS  A ++  +
Sbjct: 2  KMKTKKSMTRRVKVTATGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKSEWARMKLGL 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.131    0.348 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 226,104
Number of extensions: 7885
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 5
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (21.9 bits)