BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9581
(903 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/889 (45%), Positives = 552/889 (62%), Gaps = 29/889 (3%)
Query: 20 KFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKEL 79
KF++L LE + RLP SIR++LE+ IRN D + ++ I +++W + E+
Sbjct: 19 KFFNLNKLE---DSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEV 75
Query: 80 PLIVTRILLQDFTGIPLLTDLAAMRSIAXXXXXXXXXXXXLVPVDLIVDHSIQVDFFREK 139
P R++LQDFTG+P + D AAMR + P DL++DHSIQVDF R
Sbjct: 76 PFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRA 135
Query: 140 KSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIY 199
SL N LEF+RN+ER++F+KWG QAF+ +IPPG GI+HQ+NLEYL+R + ++D Y
Sbjct: 136 DSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYY 195
Query: 200 YPDIIVGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQPIYFLIPDVIGVNLIGKLNKGVT 259
YPD +VGTDSHTTMI+ + MLGQPI ++P VIG L+GK + VT
Sbjct: 196 YPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVT 255
Query: 260 ATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKIT 319
+TD+VLTITK LR+ VVGKFVEFFG GV L + DRATI+NM PEYGAT FFPVD+++
Sbjct: 256 STDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVS 315
Query: 320 VNYFYNTGRNNLEIKAFESYFKSQKL---FGIPKIGEIDYTDIITLNLDNVSPSLSGPNR 376
+ Y TGR+ ++K + Y ++ + F P + D+T ++ L+L V P SGP R
Sbjct: 316 ITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPS-QDPDFTQVVELDLKTVVPCCSGPKR 374
Query: 377 PQDLIKLNNVKKKFTELL-IKPTFKNGFNKDINELN--KIYITKNG-IKIKNGDILIAAI 432
PQD + ++++KK F L K FK GF N K +I N + +G ++IAAI
Sbjct: 375 PQDKVAVSDMKKDFESCLGAKQGFK-GFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAI 433
Query: 433 TSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492
TSCTNTSNP++ML AGLLAKKAV GL + P IKTS +PGS VVT YL SG++ YL +L
Sbjct: 434 TSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQL 493
Query: 493 GFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFESRIHPSIYANFLASP 552
GF++V YGC TCIGN RNFE R+HP+ AN+LASP
Sbjct: 494 GFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASP 553
Query: 553 PLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYK 612
PLVIAYAIAG I +D EPLG++ G++++L DIWP+ +EI ++E+ + +F Y+
Sbjct: 554 PLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQ 613
Query: 613 NIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCIL 671
I+ + W+ ++ T D ++ W STYI PPFF N L + PK+I A L L
Sbjct: 614 KIETV-NESWNALA-TPSDKLFFWNSKSTYIKSPPFFENLTLDLQP-PKSIVDAYVLLNL 670
Query: 672 GDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKN 731
GDS+TTDHISPAG I +SPA ++L N G+ EFNSYGSRRGN VM RGTF+N R+ N
Sbjct: 671 GDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLN 730
Query: 732 LITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAA 791
L K Q T + PSGE + +++AA +Y + I+ AGKEYG GSSRDWAA
Sbjct: 731 --RFLNKQAPQ-----TIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAA 783
Query: 792 KGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKI 851
KG LLG+K V+A S+ERIHR+NL+GMG++PL++L ++ +L +TG E + + I + +
Sbjct: 784 KGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTII-IPENL 842
Query: 852 KPLEKIDFXXXXXXXXXXXXXXXXXXXDTPMEIKYYQNDGILPFVLREL 900
KP K+ DT +E+ Y+ N GIL +++R++
Sbjct: 843 KPQMKVQV-----KLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 886
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/890 (44%), Positives = 547/890 (61%), Gaps = 38/890 (4%)
Query: 28 EKKFNIN------ISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPL 81
+K FN+N RLP SIR++LE+ +RN D + +E I ++NW E+P
Sbjct: 38 KKFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDIENILNWNVTQHMNIEVPF 97
Query: 82 IVTRILLQDFTGIPLLTDLAAMRSIAXXXXXXXXXXXXLVPVDLIVDHSIQVDFFREKKS 141
R++LQDFTG+P + D AAMR + PVDL++DHSIQVDF R S
Sbjct: 98 KPARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPVDLVIDHSIQVDFNRRADS 157
Query: 142 LDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP 201
L N LEF+RN+ER++F+KWG +AF +IPPG GI+HQ+NLEYL+R + ++D YYP
Sbjct: 158 LQKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYP 217
Query: 202 DIIVGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQPIYFLIPDVIGVNLIGKLNKGVTAT 261
D +VGTDSHTTMI+ + MLGQPI ++P VIG L+GK + VT+T
Sbjct: 218 DSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTST 277
Query: 262 DLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVN 321
D+VLTITK LR+ VVGKFVEFFG GV L + DRATI+NM PEYGAT FFPVD++++
Sbjct: 278 DIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIK 337
Query: 322 YFYNTGRNNLEIKAFESYFKSQKLF---GIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQ 378
Y TGR+ ++K Y ++ +F P + D+T ++ L+L V P SGP RPQ
Sbjct: 338 YLVQTGRDESKVKQIRKYLQAVGMFRDYSDPS-QDPDFTQVVELDLKTVVPCCSGPKRPQ 396
Query: 379 DLIKLNNVKKKFTELL-IKPTFKNGFN--KDINELNKIYITKNG-IKIKNGDILIAAITS 434
D + ++++KK F L K FK GF D + +K +I + + +G ++IAAITS
Sbjct: 397 DKVAVSDMKKDFESCLGAKQGFK-GFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITS 455
Query: 435 CTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGF 494
TNTSNP++ML AGLLAKKAV GL + P +KTS +PGS VVT YL SG++ YL +LGF
Sbjct: 456 STNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGF 515
Query: 495 NIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFESRIHPSIYANFLASPPL 554
++V YG TCIGN RNFE R+HP+ AN+LASPPL
Sbjct: 516 DVVGYGSMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPL 575
Query: 555 VIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNI 614
VIAYAIAG I +D EPLG + G++++L DIWP+ EEI ++E+ + +F Y+ I
Sbjct: 576 VIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKI 635
Query: 615 KNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGD 673
+ W+ ++ D +Y W P STYI PPFF N L + PK+I A L LGD
Sbjct: 636 ETVNAS-WNALA-APSDKLYLWNPKSTYIKSPPFFENLTLDLQP-PKSIVDAYVLLNLGD 692
Query: 674 SITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLI 733
S+TTDHISPAG I +SPA ++L N G+ EFNSYGSRRGN +M RGTF+N R+ N
Sbjct: 693 SVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLN-- 750
Query: 734 TILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKG 793
L K Q T + PSGE + +++AA +Y I+ AGKEYG+GSSRDWAAKG
Sbjct: 751 RFLNKQAPQ-----TIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKG 805
Query: 794 TKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDL---KGISKK 850
LLG+K V+A S+ERIHR+NL+GMG++PL++L ++ SL +TG E + + + ++ +
Sbjct: 806 PFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPR 865
Query: 851 IKPLEKIDFXXXXXXXXXXXXXXXXXXXDTPMEIKYYQNDGILPFVLREL 900
+ K+D DT +E+ Y+ N GIL +++R++
Sbjct: 866 MHVQVKLD---------TGKTFQAVIRFDTDVELTYFHNGGILNYMIRKM 906
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 197/712 (27%), Positives = 288/712 (40%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 93 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 144
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 145 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 194
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 195 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 254
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 255 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDSG-CHYD 308
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 309 QLIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 343
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 344 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 397
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 398 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 450
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 451 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 506
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 507 RAE-FDPGQDTY--------QHPPK------DSSGQRVDVSPTSQRLQLLEPFDKWD--- 548
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L + N+
Sbjct: 549 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDNISNN------- 589
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
++I S R N + +N E G + + A Y + I ++
Sbjct: 590 --LLIGAINSENRKANSV----RNAVTQEFG-----------PVPDTARYYKQHGIRWVV 632
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG GSSR+ +A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 633 IGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFAD 684
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 197/712 (27%), Positives = 288/712 (40%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 93 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 144
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 145 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 194
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 195 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 254
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 255 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDSG-CHYD 308
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 309 QLIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 343
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 344 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 397
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 398 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 450
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 451 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 506
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 507 RAE-FDPGQDTY--------QHPPK------DSSGQRVDVSPTSQRLQLLEPFDKWD--- 548
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L + N+
Sbjct: 549 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDNISNN------- 589
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
++I S R N + +N E G + + A Y + I ++
Sbjct: 590 --LLIGAINSENRKANSV----RNAVTQEFG-----------PVPDTARYYKQHGIRWVV 632
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG GSSR+ +A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 633 IGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFAD 684
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 197/712 (27%), Positives = 287/712 (40%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 93 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 144
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 145 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 194
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 195 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 254
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 255 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDSG-CHYD 308
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 309 QLIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 343
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 344 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 397
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 398 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 450
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 451 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 506
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 507 RAE-FDPGQDTY--------QHPPK------DSSGQRVDVSPTSQRLQLLEPFDKWD--- 548
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L + N+
Sbjct: 549 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDNISNN------- 589
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
++I S R N + +N E G + + A Y + I ++
Sbjct: 590 --LLIGAINSENRKANSV----RNAVTQEFG-----------PVPDTARYYKQHGIRWVV 632
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG GSSR+ A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 633 IGDENYGEGSSREHRALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFAD 684
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 195/712 (27%), Positives = 284/712 (39%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 93 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 144
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 145 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 194
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 195 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 254
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 255 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDPG-CHYD 308
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 309 QVIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 343
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 344 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 397
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 398 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 450
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 451 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 506
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 507 RAE-FDPGQDTY--------QHPPK------DSSGQRVDVSPTSQRLQLLEPFDKWD--- 548
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L +
Sbjct: 549 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDN----------- 585
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
SN + I I + + T E + + A Y + I ++
Sbjct: 586 --------ISNNLLIGAINIENRKANSVRNAVTQ-----EFGPVPDTARYYKQHGIRWVV 632
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG GSSR+ +A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 633 IGDENYGEGSSREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFAD 684
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 194/712 (27%), Positives = 284/712 (39%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 92 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 143
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 144 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 193
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 194 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 253
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 254 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDPG-CHYD 307
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 308 QVIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 342
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 343 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 396
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 397 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 449
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 450 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 505
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 506 RAE-FDPGQDTY--------QHPPK------DSSGQRVAVSPTSQRLQLLEPFDKWD--- 547
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L +
Sbjct: 548 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDN----------- 584
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
SN + I I + + T E + + A Y + I ++
Sbjct: 585 --------ISNNLLIGAINIENRKANSVRNAVTQ-----EFGPVPDTARYYKQHGIRWVV 631
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG G+SR+ +A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 632 IGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFAD 683
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 194/712 (27%), Positives = 284/712 (39%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 92 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 143
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 144 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 193
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 194 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 253
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 254 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDPG-CHYD 307
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 308 QVIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 342
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 343 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 396
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 397 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 449
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 450 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 505
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 506 RAE-FDPGQDTY--------QHPPK------DSSGQRVDVSPTSQRLQLLEPFDKWD--- 547
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L +
Sbjct: 548 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDN----------- 584
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
SN + I I + + T E + + A Y + I ++
Sbjct: 585 --------ISNNLLIGAINIENRKANSVRNAVTQ-----EFGPVPDTARYYKQHGIRWVV 631
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG G+SR+ +A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 632 IGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFAD 683
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 194/712 (27%), Positives = 284/712 (39%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 93 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 144
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 145 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 194
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 195 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 254
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 255 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDPG-CHYD 308
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 309 QVIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 343
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 344 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 397
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 398 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 450
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 451 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 506
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 507 RAE-FDPGQDTY--------QHPPK------DSSGQRVDVSPTSQRLQLLEPFDKWD--- 548
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L +
Sbjct: 549 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDN----------- 585
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
SN + I I + + T E + + A Y + I ++
Sbjct: 586 --------ISNNLLIGAINIENRKANSVRNAVTQ-----EFGPVPDTARYYKQHGIRWVV 632
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG G+SR+ +A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 633 IGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFAD 684
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 194/712 (27%), Positives = 284/712 (39%), Gaps = 125/712 (17%)
Query: 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPPGFG 178
VP + DH I+ EK DL + N+E Y F+ A K+ V PG G
Sbjct: 92 VPSTIHCDHLIEAQLGGEK---DLRRAKDI--NQEVYNFL---ATAGAKYGVGFWRPGSG 143
Query: 179 IVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXMLGQP 237
I+HQI LE N YP ++ +GTDSHT + M G P
Sbjct: 144 IIHQIILE----------NYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIP 193
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRA 297
P VIGV L G L+ + D++L + +L K G VE+ G GV S+ A
Sbjct: 194 WELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMA 253
Query: 298 TISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
TI NM E GAT FP + Y TGR ++ A E FK +P G Y
Sbjct: 254 TICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--FKDHL---VPDPG-CHYD 307
Query: 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK 417
+I +NL + P ++GP FT L P + E+ + K
Sbjct: 308 QVIEINLSELKPHINGP---------------FTPDLAHP---------VAEVGSV-AEK 342
Query: 418 NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVT 477
G + DI + I SCTN+S ++ SA + AK+A+ GL+ K + + TPGS +
Sbjct: 343 EGWPL---DIRVGLIGSCTNSSYEDMGRSAAV-AKQALAHGLKC--KSQFTITPGSEQIR 396
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNXXXXXXXXXXXXXXXXXXXXXXXXXXRNFE 537
+ G L +G ++A C CIG RNF
Sbjct: 397 ATIERDGYAQVLRDVGGIVLANACGPCIGQ-------WDRKDIKKGEKNTIVTSYNRNFT 449
Query: 538 SR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEIN 595
R +P +A F+ SP +V A AIAG + + + L K+GKK L P +E+
Sbjct: 450 GRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELP 505
Query: 596 SLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKF 655
E F ++ + +P K D+ + P S + F+ +
Sbjct: 506 RAE-FDPGQDTY--------QHPPK------DSSGQRVDVSPTSQRLQLLEPFDKWD--- 547
Query: 656 EYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715
K+++ + L + TTDHI S AG WL G L +
Sbjct: 548 ---GKDLEDLQILIKVKGKCTTDHI---------SAAGPWLKFRGHLDN----------- 584
Query: 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTII 775
SN + I I + + T E + + A Y + I ++
Sbjct: 585 --------ISNNLLIGAINIENRKANSVRNAVTQ-----EFGPVPDTARYYKQHGIRWVV 631
Query: 776 FAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ YG GSS++ +A + LG + +I +SF RIH NL G+LPL F +
Sbjct: 632 IGDENYGEGSSQEHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFAD 683
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQS 833
+I AG+ +G GSSR+ A K G+K VIA+SF RI N I +G++P+ N D I+
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPI-IANTDEIKD 112
Query: 834 LNIT 837
+I
Sbjct: 113 GDIV 116
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQS 833
++ AGK +G GSSR+ AA K LG+ VIA SF RI N I +GI PL + ++
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGI-PLLLGKTEGLKD 112
Query: 834 LNIT 837
++
Sbjct: 113 GDLV 116
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPL 823
II GK +G GSSR+ A G K G+ VIA SF RI N I +G LPL
Sbjct: 56 IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVG-LPL 104
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPL 823
++I+ G +G GSSR+ AA G K+++A SF IH N + GILP+
Sbjct: 86 ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPI 137
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSI 831
S+I+ + + +G+GSSR+ A G++ +IA SF I + N +G G+L ++ ++ +
Sbjct: 73 SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKDEVL 132
Query: 832 Q 832
+
Sbjct: 133 E 133
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 773 TIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNND 829
+++ AG ++GTGSSR+ A G ++VI+ F I R N G+L + +D
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDD 122
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 773 TIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNND 829
+++ AG ++GTGSSR+ A G ++VI+ F I R N G+L + +D
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDD 122
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 773 TIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNND 829
+++ AG ++GTGSSR+ A G ++VI+ F I R N G+L + +D
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDD 122
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 49/258 (18%)
Query: 175 PGFGIVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIXXXXXXXXXXXXXXXM 233
PG G++H +L+R +L PD + G DSHT I
Sbjct: 474 PGDGVIHS----WLNRMLL-------PDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 234 LGQPIYFLIPDVIGVNLIGKLNKGVTATDLV------------LTITKLLRKKNVVGKFV 281
+ + +P+ + V GK+ G+T DLV LT+ K +K G+ +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 282 EFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNT--------------G 327
E +G+ L + +++ + E A ++K + + N+
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 328 RNNLE--IKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNV-SPSLSGPNRPQDLIKLN 384
R LE I+ E + + +L + + +Y +I ++L ++ P L PN P D L+
Sbjct: 638 RRTLERRIQGMEKWLANPEL--LEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLS 695
Query: 385 NVK-KKFTELLIKPTFKN 401
V+ +K E+ I N
Sbjct: 696 AVQGEKIDEVFIGSCMTN 713
>pdb|2IME|A Chain A, 2-hydroxychromene-2-carboxylate Isomerase: A Kappa Class
Glutathione- S-transferase From Pseudomonas Putida
pdb|2IMF|A Chain A, 2-Hydroxychromene-2-Carboxylate Isomerase: A Kappa Class
Glutathione- S-Transferase From Pseudomonas Putida
Length = 203
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 281 VEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVD----KITVNYFYNTGRNNLEIKAF 336
V+F+ D + +S +A +YG TI + +D KI + N G +N ++K
Sbjct: 3 VDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYNAIDLARVKIAIG---NVGPSNRDLKVK 59
Query: 337 ESYFKSQ-----KLFGIPKIGEIDY 356
Y K +L+GIP + +Y
Sbjct: 60 LDYLKVDLQRWAQLYGIPLVFPANY 84
>pdb|2IMD|A Chain A, Structure Of Semet 2-Hydroxychromene-2-Carboxylate
Isomerase (Hcca Isomerase)
Length = 203
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 281 VEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVD----KITVNYFYNTGRNNLEIKAF 336
V+F+ D + +S +A +YG TI + +D KI + N G +N ++K
Sbjct: 3 VDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYNAIDLARVKIAIG---NVGPSNRDLKVK 59
Query: 337 ESYFKSQ-----KLFGIPKIGEIDY 356
Y K +L+GIP + +Y
Sbjct: 60 LDYLKVDLQRWAQLYGIPLVFPANY 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,726,690
Number of Sequences: 62578
Number of extensions: 1107123
Number of successful extensions: 2636
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2541
Number of HSP's gapped (non-prelim): 45
length of query: 903
length of database: 14,973,337
effective HSP length: 108
effective length of query: 795
effective length of database: 8,214,913
effective search space: 6530855835
effective search space used: 6530855835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)