Query psy9581
Match_columns 903
No_of_seqs 368 out of 2682
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:19:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12881 acnA aconitate hydrat 100.0 7E-254 2E-258 2216.4 79.4 881 3-902 4-889 (889)
2 PRK09277 aconitate hydratase; 100.0 8E-253 2E-257 2202.8 81.0 879 3-902 5-887 (888)
3 TIGR01341 aconitase_1 aconitat 100.0 7E-252 1E-256 2192.9 77.7 871 17-901 1-876 (876)
4 PTZ00092 aconitate hydratase-l 100.0 7E-251 2E-255 2188.1 77.4 873 9-902 21-897 (898)
5 PLN00070 aconitate hydratase 100.0 4E-250 8E-255 2184.1 76.9 879 5-902 45-935 (936)
6 TIGR02333 2met_isocit_dHY 2-me 100.0 1E-246 3E-251 2140.5 75.2 846 16-902 10-858 (858)
7 KOG0452|consensus 100.0 2E-247 4E-252 2014.3 48.1 872 9-901 14-892 (892)
8 COG1048 AcnA Aconitase A [Ener 100.0 9E-243 2E-247 2081.9 67.9 858 4-902 2-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 7E-177 1E-181 1554.0 61.4 712 44-896 21-745 (745)
10 PRK07229 aconitate hydratase; 100.0 4E-163 9E-168 1430.3 57.5 642 43-901 3-645 (646)
11 TIGR01342 acon_putative aconit 100.0 5E-161 1E-165 1409.8 56.7 650 44-901 1-653 (658)
12 TIGR00139 h_aconitase homoacon 100.0 5E-147 1E-151 1289.3 53.4 663 43-900 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 4E-146 8E-151 1287.5 52.1 689 42-898 34-750 (751)
14 KOG0453|consensus 100.0 2E-143 4E-148 1198.8 45.3 692 73-898 79-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 3E-128 7E-133 1067.1 37.5 400 85-564 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 7E-122 2E-126 1042.5 40.9 451 43-565 3-460 (465)
17 PRK12466 isopropylmalate isome 100.0 9E-122 2E-126 1043.2 39.4 451 43-565 4-462 (471)
18 PF00330 Aconitase: Aconitase 100.0 2E-121 5E-126 1043.2 35.4 460 44-562 1-465 (465)
19 PRK05478 isopropylmalate isome 100.0 1E-120 2E-125 1034.2 40.5 451 43-565 3-460 (466)
20 cd01584 AcnA_Mitochondrial Aco 100.0 2E-118 4E-123 999.3 38.8 409 85-564 1-412 (412)
21 TIGR01343 hacA_fam homoaconita 100.0 2E-116 4E-121 983.4 40.1 407 44-565 1-409 (412)
22 PRK00402 3-isopropylmalate deh 100.0 4E-116 9E-121 981.9 40.4 408 43-565 3-412 (418)
23 cd01583 IPMI 3-isopropylmalate 100.0 4E-116 8E-121 975.3 38.3 380 85-564 1-382 (382)
24 TIGR02086 IPMI_arch 3-isopropy 100.0 4E-116 8E-121 981.1 38.2 406 44-565 2-408 (412)
25 COG0065 LeuC 3-isopropylmalate 100.0 1E-115 3E-120 948.7 37.9 410 43-565 3-417 (423)
26 TIGR02083 LEU2 3-isopropylmala 100.0 4E-115 9E-120 971.6 40.4 410 44-565 2-414 (419)
27 cd01585 AcnA_Bact Aconitase ca 100.0 6E-115 1E-119 962.6 36.9 379 84-564 1-380 (380)
28 cd01581 AcnB Aconitate hydrata 100.0 1E-107 2E-112 915.8 37.6 406 45-564 1-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 2E-105 4E-110 880.5 35.2 361 85-564 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 3E-101 6E-106 863.2 36.3 388 85-564 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 1.2E-98 3E-103 884.5 35.8 410 43-565 371-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 6.9E-98 1E-102 875.4 35.7 409 43-565 372-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 7.2E-96 2E-100 855.5 36.5 411 43-565 444-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 3.3E-63 7.2E-68 488.1 13.0 170 670-845 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 2.1E-47 4.6E-52 427.2 22.9 409 44-565 374-812 (852)
36 KOG0454|consensus 100.0 2.4E-42 5.1E-47 376.6 13.1 398 337-845 12-418 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 3.5E-39 7.7E-44 314.1 10.1 149 670-854 1-149 (149)
38 COG0066 LeuD 3-isopropylmalate 100.0 5.7E-35 1.2E-39 293.3 11.4 166 666-900 10-179 (191)
39 PRK00439 leuD 3-isopropylmalat 100.0 1.3E-34 2.9E-39 290.0 13.1 157 668-901 4-160 (163)
40 TIGR02087 LEUD_arch 3-isopropy 100.0 1.1E-34 2.5E-39 287.6 12.3 152 668-899 3-154 (154)
41 TIGR02084 leud 3-isopropylmala 100.0 1.3E-34 2.7E-39 287.6 11.1 154 668-898 3-156 (156)
42 PRK14023 homoaconitate hydrata 100.0 2.9E-34 6.3E-39 287.9 10.4 155 668-900 4-158 (166)
43 PLN00072 3-isopropylmalate iso 100.0 5.1E-33 1.1E-37 291.2 12.2 171 661-901 68-242 (246)
44 PF00694 Aconitase_C: Aconitas 100.0 1.3E-32 2.9E-37 265.4 6.6 128 694-827 3-130 (131)
45 TIGR00171 leuD 3-isopropylmala 100.0 1.2E-31 2.6E-36 273.2 9.2 165 662-890 7-174 (188)
46 PRK01641 leuD isopropylmalate 100.0 5.5E-31 1.2E-35 271.0 9.4 163 661-890 6-172 (200)
47 cd01579 AcnA_Bact_Swivel Bacte 100.0 6.3E-31 1.4E-35 251.3 7.6 120 670-845 1-120 (121)
48 cd00404 Aconitase_swivel Aconi 99.9 1.9E-27 4.2E-32 214.6 7.6 71 773-845 17-87 (88)
49 KOG0454|consensus 99.9 1.5E-27 3.3E-32 261.2 5.8 418 44-563 68-498 (502)
50 cd01577 IPMI_Swivel Aconatase- 99.9 2.9E-27 6.2E-32 214.9 6.1 72 773-845 19-90 (91)
51 PRK09238 bifunctional aconitat 99.9 2.6E-26 5.6E-31 272.8 14.5 165 661-901 165-342 (835)
52 cd01674 Homoaconitase_Swivel H 99.9 6.3E-27 1.4E-31 222.8 5.8 58 770-827 44-101 (129)
53 cd01576 AcnB_Swivel Aconitase 99.9 1.8E-24 3.8E-29 208.5 6.1 68 773-846 52-131 (131)
54 TIGR00117 acnB aconitate hydra 99.9 4.3E-23 9.3E-28 244.9 11.9 163 661-900 166-342 (844)
55 PLN00094 aconitate hydratase 2 99.8 3.7E-18 8E-23 202.9 13.6 116 764-900 286-414 (938)
56 PRK14812 hypothetical protein; 99.7 7E-18 1.5E-22 160.8 7.3 64 783-847 2-66 (119)
57 PF06434 Aconitase_2_N: Aconit 98.5 4.2E-07 9E-12 92.9 8.8 162 667-901 2-175 (204)
58 PF04412 DUF521: Protein of un 96.2 0.012 2.7E-07 67.8 8.2 71 424-502 287-357 (400)
59 COG1049 AcnB Aconitase B [Ener 96.2 0.0066 1.4E-07 71.3 5.6 115 764-898 215-341 (852)
60 COG1679 Predicted aconitase [G 94.6 0.081 1.8E-06 59.9 7.2 70 424-501 287-356 (403)
61 cd01355 AcnX Putative Aconitas 92.6 0.28 6.1E-06 56.6 7.3 70 426-506 278-347 (389)
62 PF06163 DUF977: Bacterial pro 24.1 39 0.00085 33.5 1.2 44 309-362 61-104 (127)
63 PF00694 Aconitase_C: Aconitas 23.4 37 0.00081 33.8 1.0 23 666-698 10-32 (131)
64 TIGR00829 FRU PTS system, fruc 21.5 80 0.0017 29.0 2.7 31 431-462 2-32 (85)
65 PF07972 Flavodoxin_NdrI: NrdI 20.9 1E+02 0.0022 30.4 3.3 42 494-536 41-85 (122)
No 1
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=6.9e-254 Score=2216.38 Aligned_cols=881 Identities=59% Similarity=0.999 Sum_probs=840.1
Q ss_pred CcccccceEeccCCceEEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEE
Q psy9581 3 HKKTILKEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLI 82 (903)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~ 82 (903)
+.|+.+++|++ +++.|+||+|++++.....++++||||||||+||+||+++|..|++++|++|++|.+..+.+.||+|+
T Consensus 4 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei~~~ 82 (889)
T PRK12881 4 NLHKTLKEFDV-GGKTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEIPFV 82 (889)
T ss_pred Cccccccceee-CCeeEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCceeccc
Confidence 34666788998 88999999999886544447999999999999999999999999999999999999888888999999
Q ss_pred eeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHH
Q psy9581 83 VTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKW 162 (903)
Q Consensus 83 pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~ 162 (903)
||||+|||+||+||++|||||||+++++|+||.++||.+||+++|||+||++.++..+++.+|+.++|+||.|||.||||
T Consensus 83 pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw 162 (889)
T PRK12881 83 PARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKW 162 (889)
T ss_pred cceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcccccCCCCcccceeeccccccceeccc----ccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCce
Q psy9581 163 GMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKD----NIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPI 238 (903)
Q Consensus 163 ~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~----g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~ 238 (903)
|+++|+||+++|||+|||||||+|+||+++|.++ |+++||++|||||||||+||||+|||||||+|++++|+||++
T Consensus 163 ~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq~~ 242 (889)
T PRK12881 163 GMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPV 242 (889)
T ss_pred HHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCCcE
Confidence 9999999999999999999999999999999764 699999999999999999999999999999999999999999
Q ss_pred eeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHH
Q psy9581 239 YFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKI 318 (903)
Q Consensus 239 ~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~ 318 (903)
||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++
T Consensus 243 ~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~ 322 (889)
T PRK12881 243 YMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQ 322 (889)
T ss_pred EeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhcccc
Q psy9581 319 TVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPT 398 (903)
Q Consensus 319 t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~ 398 (903)
|++||+.|||++++++++|+|.|+|++|+++|++|. |+++++||||+|||+||||++|||++||+++..+|.+++....
T Consensus 323 T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~~d~~a~-Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~~ 401 (889)
T PRK12881 323 TLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPR-YTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPV 401 (889)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhhcCcCCCCc-eeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhhHH
Confidence 999999999999999999999999999998899999 9999999999999999999999999999999998887764322
Q ss_pred ccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHH
Q psy9581 399 FKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTE 478 (903)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~ 478 (903)
..+++.+ +. -.+.+..++||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++
T Consensus 402 ~~~~~~~-----~~--~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~ 474 (889)
T PRK12881 402 AENGFAK-----KA--QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTE 474 (889)
T ss_pred Hhhhhhc-----cc--ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHH
Confidence 2222210 00 0234457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHH
Q psy9581 479 YLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAY 558 (903)
Q Consensus 479 ~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~ 558 (903)
||+++||+++|+++||+|++||||+|+||||+++++++++|.+||+++++|||+||||+||||+..+++|||||++||||
T Consensus 475 ~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~ 554 (889)
T PRK12881 475 YLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAY 554 (889)
T ss_pred HHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC-C
Q psy9581 559 AIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-P 637 (903)
Q Consensus 559 AlaG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~ 637 (903)
||+|+|++|+++||||++++|++|||+||||+.+||++.+++.+++++|.+.|++++++++. |++|++ +++++|+| |
T Consensus 555 AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~-w~~l~~-~~~~~~~wd~ 632 (889)
T PRK12881 555 ALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSEL-WAAIEA-PDGPLYDWDP 632 (889)
T ss_pred HhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccc-cccccC-CCCCeeccCC
Confidence 99999999999999999999999999999999999999998999999999999999999998 999999 99999999 9
Q ss_pred CccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChh
Q psy9581 638 ISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHE 717 (903)
Q Consensus 638 ~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~ 717 (903)
+||||++||||+++...++++ ++|.++|||+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||
T Consensus 633 ~StyI~~pPff~~~~~~~~~~-~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~e 711 (889)
T PRK12881 633 KSTYIRRPPFFDFSMGPAASI-ATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHE 711 (889)
T ss_pred CCCcccCCCCCcccccCCCCC-CCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchH
Confidence 999999999999988777777 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhc
Q psy9581 718 VMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLL 797 (903)
Q Consensus 718 vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~ 797 (903)
||+||||+|+|++|.|+ + +.+|++|+|.|+|+.++|||+|++|++++.|+|||||+|||||||||||||+++++
T Consensus 712 vm~rgtF~nir~~N~l~-~-----~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~l 785 (889)
T PRK12881 712 VMMRGTFANVRIKNLMI-P-----GKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLL 785 (889)
T ss_pred HhhhhccccCcccceec-c-----ccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHh
Confidence 99999999999999998 5 67999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEee
Q psy9581 798 GVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLR 877 (903)
Q Consensus 798 Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~ 877 (903)
||+||||+||+||||+||+|||||||+|++..++++|+++++|+++|+++.+.++||+++++++++.+|+++ +|++.++
T Consensus 786 Gv~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~~i~p~~~v~v~~~~~~G~~~-~~~~~~r 864 (889)
T PRK12881 786 GVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPGEIKPRQDVTLVIHRADGSTE-RVPVLCR 864 (889)
T ss_pred CCcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCccccCCCCeEEEEEEeCCCCEE-EEEEEec
Confidence 999999999999999999999999999999999999999999999999877568999999998888888877 9999999
Q ss_pred cCCHHHHHHHHhcCcHHHHHHHhhc
Q psy9581 878 IDTPMEIKYYQNDGILPFVLRELLN 902 (903)
Q Consensus 878 ~~t~~e~ei~~aGGll~yv~~~~~~ 902 (903)
++|+.|++|+++||||||+++++++
T Consensus 865 ~dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 865 IDTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred cCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 9999999999999999999999874
No 2
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=8.3e-253 Score=2202.78 Aligned_cols=879 Identities=54% Similarity=0.934 Sum_probs=840.6
Q ss_pred CcccccceEeccCCceEEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEE
Q psy9581 3 HKKTILKEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLI 82 (903)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~ 82 (903)
+.|..+++|++ +++.|+||+|+++++....++++||||||||+|++||+++|..+++++|++|++|.+..+++.||+|+
T Consensus 5 ~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei~f~ 83 (888)
T PRK09277 5 DSFKARKTLEV-GGKSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREIPFR 83 (888)
T ss_pred Ccccccceeee-CCeeEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCceeeec
Confidence 34566778998 88999999999887654457999999999999999999999999999999999999988899999999
Q ss_pred eeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHH
Q psy9581 83 VTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKW 162 (903)
Q Consensus 83 pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~ 162 (903)
||||+|||+||+||++||||||++++++|+||++|||.+||++|+||+||++.++..+++.+|+.++|+||.|||.||||
T Consensus 84 p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~fLkw 163 (888)
T PRK09277 84 PARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKW 163 (888)
T ss_pred cceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcccccCCCCcccceeeccccccceecc-cc--cccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCcee
Q psy9581 163 GMQAFNKFNVIPPGFGIVHQINLEYLSRGILNK-DN--IYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIY 239 (903)
Q Consensus 163 ~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~-~g--~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~ 239 (903)
|+++|++|+++|||+|||||||+|+||++++.+ .| +++||++|||||||||+||||+|||||||+|++++|+||++|
T Consensus 164 ~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~~~ 243 (888)
T PRK09277 164 GQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSS 243 (888)
T ss_pred HHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCcEE
Confidence 999999999999999999999999999999977 67 999999999999999999999999999999999999999999
Q ss_pred eecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHH
Q psy9581 240 FLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKIT 319 (903)
Q Consensus 240 ~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t 319 (903)
|++||||+|+|+|+|++|||||||||+|+++||++|++||+|||+|||+++||+++|||||||++|||||+||||+|++|
T Consensus 244 ~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T 323 (888)
T PRK09277 244 MLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEET 323 (888)
T ss_pred eeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccc
Q psy9581 320 VNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTF 399 (903)
Q Consensus 320 ~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~ 399 (903)
++||+.|||++++++++++|.+++++|+.+|++|. |+++++||||+|+|+||||++|||++||+++.+++.+++...
T Consensus 324 ~~YL~~tgr~~~~v~~~e~y~ka~~~~~~~D~~a~-Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~~~-- 400 (888)
T PRK09277 324 LDYLRLTGRDEEQVALVEAYAKAQGLWRDPLEEPV-YTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELG-- 400 (888)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHhhhccCCCCCC-EEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhchhh--
Confidence 99999999999999999999999999987788999 999999999999999999999999999999999877653211
Q ss_pred cCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHH
Q psy9581 400 KNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEY 479 (903)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~ 479 (903)
.+++. .+..++|.+.+|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++|
T Consensus 401 ~~~~~------~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~ 474 (888)
T PRK09277 401 VQGFG------LDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDY 474 (888)
T ss_pred hhhhh------hhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHH
Confidence 11111 122245677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHH
Q psy9581 480 LNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYA 559 (903)
Q Consensus 480 l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~A 559 (903)
|+++||+++|+++||+|++||||+|+||||+++++++++|.++|++++||||+||||+||||+..+++|||||+||||||
T Consensus 475 l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~A 554 (888)
T PRK09277 475 LEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYA 554 (888)
T ss_pred HHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC-CC
Q psy9581 560 IAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PI 638 (903)
Q Consensus 560 laG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~~ 638 (903)
|+|+|++|+++||||++++|++|||+||||+.+||++++.+.+++++|++.|++++.+++. |+++++ ++++.|+| |+
T Consensus 555 laG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~-w~~l~~-~~~~~~~w~~~ 632 (888)
T PRK09277 555 LAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDER-WNAIEV-PEGPLYDWDPD 632 (888)
T ss_pred HcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchh-hccCCC-CCCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988 999999 99999999 99
Q ss_pred ccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhh
Q psy9581 639 STYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEV 718 (903)
Q Consensus 639 styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~v 718 (903)
||||++||||+++...+.++ +++.++|||+++||+||||||||||+|+++||||+||+++|+.++||||||+|||||||
T Consensus 633 StyI~~pp~f~~~~~~~~~~-~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ev 711 (888)
T PRK09277 633 STYIRNPPYFEGMLAEPGPV-RDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEV 711 (888)
T ss_pred CCcccCCCCCCcccccCCCC-CCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchh
Confidence 99999999999987766666 79999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcC
Q psy9581 719 MIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLG 798 (903)
Q Consensus 719 m~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~G 798 (903)
|+||||+|+|++|+|+ + +.+|+||++.|+|+.++|||+|++|+++|.++|||||+|||||||||||+|++++||
T Consensus 712 m~RgtfaNir~~N~l~-~-----g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lg 785 (888)
T PRK09277 712 MMRGTFANIRIRNEMV-P-----GVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLG 785 (888)
T ss_pred hhheeccccchhhhcc-c-----CCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhC
Confidence 9999999999999998 5 679999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeec
Q psy9581 799 VKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRI 878 (903)
Q Consensus 799 v~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~ 878 (903)
|+||||+||+|||++||+|+|||||+|++++++++|+++++|+++|.++.+ ++||+++++++++.+|+.+ +|++++++
T Consensus 786 i~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~~-l~p~~~v~v~~~~~~G~~~-~~~~~~r~ 863 (888)
T PRK09277 786 VKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLED-LKPGATVTVVITRADGEVV-EFPVLCRI 863 (888)
T ss_pred CcEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCccc-CCCCCEEEEEEEeCCCCEE-EEEEEEec
Confidence 999999999999999999999999999999999999999999999988874 9999999998888888877 99999999
Q ss_pred CCHHHHHHHHhcCcHHHHHHHhhc
Q psy9581 879 DTPMEIKYYQNDGILPFVLRELLN 902 (903)
Q Consensus 879 ~t~~e~ei~~aGGll~yv~~~~~~ 902 (903)
+|+.|++|+++||+||||++++++
T Consensus 864 dt~~Ei~y~~~GGiL~yv~r~~~~ 887 (888)
T PRK09277 864 DTAVEVDYYRNGGILQYVLRDLLA 887 (888)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHhh
Confidence 999999999999999999999975
No 3
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=6.7e-252 Score=2192.87 Aligned_cols=871 Identities=55% Similarity=0.932 Sum_probs=826.8
Q ss_pred ceEEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHH
Q psy9581 17 KKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPL 96 (903)
Q Consensus 17 ~~~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a 96 (903)
+.|+||+|++++.+ ..++++||||||||+||+||+++|..+++++|++|++|.++.+.+.||.|+||||+|||+||+||
T Consensus 1 ~~~~~~~l~~l~~~-~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa 79 (876)
T TIGR01341 1 KTYYYYSLKALEES-GGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPA 79 (876)
T ss_pred CceEEEehHHhhcc-cCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchH
Confidence 35999999988654 33799999999999999999999999999999999999888878899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCC
Q psy9581 97 LTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPG 176 (903)
Q Consensus 97 ~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg 176 (903)
++|||||||+++++|+||.+|||.+||+|++||+||++.++..+++..|+.++|+||.|||.|||||+++|.||+++|||
T Consensus 80 ~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg 159 (876)
T TIGR01341 80 VVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPG 159 (876)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccceeeccccccceeccc----ccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEc
Q psy9581 177 FGIVHQINLEYLSRGILNKD----NIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIG 252 (903)
Q Consensus 177 ~GI~HqV~~E~la~~~~~~~----g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G 252 (903)
+|||||||+|+||+++|.++ |+++||++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|
T Consensus 160 ~GI~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG 239 (876)
T TIGR01341 160 TGIIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTG 239 (876)
T ss_pred CCeeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEe
Confidence 99999999999999999764 59999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhh
Q psy9581 253 KLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLE 332 (903)
Q Consensus 253 ~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~ 332 (903)
+|++|||||||||+|+++||++|++||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++
T Consensus 240 ~L~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~ 319 (876)
T TIGR01341 240 KLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDH 319 (876)
T ss_pred ecCCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccc
Q psy9581 333 IKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNK 412 (903)
Q Consensus 333 ~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (903)
++++++|.|.|+||+..+++|. |+++++||||+|||+||||++|||++||+++.+.|.+++....+..++...... ..
T Consensus 320 ~~l~~~y~k~~~l~~~d~~~a~-Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~-~~ 397 (876)
T TIGR01341 320 VELVEKYARAQGLFYDDSEEPR-YTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEP-LK 397 (876)
T ss_pred HHHHHHHHHhcccccCCCCCCc-eeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhhh-hh
Confidence 9999999999999984337899 999999999999999999999999999999999988776543221221100000 00
Q ss_pred eeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhc
Q psy9581 413 IYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492 (903)
Q Consensus 413 ~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~a 492 (903)
..++|...+|.||+|++|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++
T Consensus 398 ~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~a 477 (876)
T TIGR01341 398 KKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEEL 477 (876)
T ss_pred eeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHc
Confidence 11345557899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhccccccCCCCC
Q psy9581 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIEP 572 (903)
Q Consensus 493 G~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~p 572 (903)
||+|++|||++|+||||+++++++++|.+++++.+||||+||||+||||+..+++|||||+|||||||+|+|++|+++||
T Consensus 478 Gf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dp 557 (876)
T TIGR01341 478 GFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEP 557 (876)
T ss_pred CCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCccCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC-CCccccCCCCCCCcc
Q psy9581 573 LGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNF 651 (903)
Q Consensus 573 lg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~~styi~~ppff~~~ 651 (903)
||++++|++|||+||||+.+||++++...+++++|++.|++++.+++. |+++++ ++++.|+| |+||||++||||+++
T Consensus 558 lg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~-w~~l~~-~~~~~~~w~~~StyI~~pp~f~~~ 635 (876)
T TIGR01341 558 IGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNER-WNSIKT-PSGDTYSWDEKSTYIRLPPFFEEM 635 (876)
T ss_pred cccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCccc-ccccCC-CCCCccccCCCCCcccCCCCCCcc
Confidence 999999999999999999999999999999999999999999999998 999999 99999999 999999999999999
Q ss_pred ccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhh
Q psy9581 652 KLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKN 731 (903)
Q Consensus 652 ~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n 731 (903)
...++++ ++|.++|||+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|++|
T Consensus 636 ~~~~~~~-~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N 714 (876)
T TIGR01341 636 KQDPEEV-EDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKN 714 (876)
T ss_pred ccCCCCC-CCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhh
Confidence 8777777 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHH
Q psy9581 732 LITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIH 811 (903)
Q Consensus 732 ~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~ 811 (903)
+|+ + |.+|++|+|+|+|+.++|||+|++|++++.|+|||||+|||||||||||+|+++++||+||||+||+|||
T Consensus 715 ~l~-~-----g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~ 788 (876)
T TIGR01341 715 LMV-K-----GKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIH 788 (876)
T ss_pred hcc-c-----CccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHH
Confidence 998 5 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcC
Q psy9581 812 RANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDG 891 (903)
Q Consensus 812 ~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGG 891 (903)
|+||+|||||||+|++++++++|+++++|+++|.++. .++||+++++++.+.+|+.+ +|+++++++|+.|++||++||
T Consensus 789 ~~N~~~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~-~l~pg~~v~v~~~~~~g~~~-~~~~~~r~dt~~E~~~~~~GG 866 (876)
T TIGR01341 789 RSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIK-DLKPGKEVTVTFTNSKGEKI-TFKCVLRIDTEVELDYYKHGG 866 (876)
T ss_pred HhhHhhcCcceEecCCCCCHHHhCCCCCCeEEEcCcc-ccCCCCEEEEEEEcCCCCEE-EEEEEEecCCHHHHHHHHcCC
Confidence 9999999999999999999999999999999998766 58999999998887788876 999999999999999999999
Q ss_pred cHHHHHHHhh
Q psy9581 892 ILPFVLRELL 901 (903)
Q Consensus 892 ll~yv~~~~~ 901 (903)
+||||+|+++
T Consensus 867 iL~yv~r~~~ 876 (876)
T TIGR01341 867 ILQYVLRKFL 876 (876)
T ss_pred HHHHHHHhhC
Confidence 9999999974
No 4
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=7.1e-251 Score=2188.11 Aligned_cols=873 Identities=53% Similarity=0.905 Sum_probs=827.9
Q ss_pred ceEeccCCceEEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEe
Q psy9581 9 KEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILL 88 (903)
Q Consensus 9 ~~~~~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~ 88 (903)
++|+ +++.|+||+|+++.. .++++||||||||+||+||+++|..+++++|++|++|.+...++.||.|+||||+|
T Consensus 21 ~~l~--~~~~~~~~~l~~~~~---~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~~~p~Rvl~ 95 (898)
T PTZ00092 21 KTLK--DGGSYKYYSLNELHD---PRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEENSKKQIEIPFKPARVLL 95 (898)
T ss_pred ccCC--CCCeEEEEEhhhccc---CChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcccCCCCceeeeccceEEe
Confidence 4555 577899999988763 37999999999999999999999999999999999999988889999999999999
Q ss_pred ecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcC
Q psy9581 89 QDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFN 168 (903)
Q Consensus 89 qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~ 168 (903)
||+||+||++|||||||+++++|+||.+|||.+||+|++||+||++.++..|++.+|+.++|+||.|||.||+|++++|+
T Consensus 96 QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~~~~f~ 175 (898)
T PTZ00092 96 QDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFK 175 (898)
T ss_pred ecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccceeeccccccceecccccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeE
Q psy9581 169 KFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGV 248 (903)
Q Consensus 169 ~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V 248 (903)
||+|+|||+|||||||+|+||+++|.++|+++||++|||||||||+||||+|||||||+|++++|+||++||++||||+|
T Consensus 176 ~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV 255 (898)
T PTZ00092 176 NLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGF 255 (898)
T ss_pred CCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEE
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCC
Q psy9581 249 NLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGR 328 (903)
Q Consensus 249 ~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR 328 (903)
+|+|+|++|||||||||+|+++||++|++||+|||+|||+++||+++|||||||++||||||||||+|++|++||+.|||
T Consensus 256 ~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR 335 (898)
T PTZ00092 256 KLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGR 335 (898)
T ss_pred EEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccc
Q psy9581 329 NNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDIN 408 (903)
Q Consensus 329 ~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~ 408 (903)
++++++++++|.++|++|+++|++|. |+++++||||+|+|+||||++|||++||+++.++|.+++......+++.+...
T Consensus 336 ~~~~~~lve~y~ka~~l~~~~D~da~-Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~ 414 (898)
T PTZ00092 336 SEEKVELIEKYLKANGLFRTYAEQIE-YSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEE 414 (898)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCCc-eeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhccCCCcc
Confidence 99889999999999999987788999 99999999999999999999999999999999988876644322222211000
Q ss_pred ---cccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCc
Q psy9581 409 ---ELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGL 485 (903)
Q Consensus 409 ---~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gl 485 (903)
...++.++|.++.|.||+|++|||||||||||||+|+||+||||||+++|+||+||||++|+|||++|++||+++||
T Consensus 415 ~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl 494 (898)
T PTZ00092 415 KHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGL 494 (898)
T ss_pred ccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCc
Confidence 00022245667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 486 LLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 486 l~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
+++|+++||+|++||||+|+|||+++++++++.|.+||+++++|||+||||+||||+..+++|||||+|||||||+|+|+
T Consensus 495 ~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~ 574 (898)
T PTZ00092 495 LKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVN 574 (898)
T ss_pred HHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC-CCccccCC
Q psy9581 566 VDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTYISQ 644 (903)
Q Consensus 566 ~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~~styi~~ 644 (903)
+|+++||||++++|++|||+||||+.+||++.+..++++++|.+.|.+++++++. |++|++ +++++|+| |+|||||+
T Consensus 575 ~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~-w~~l~~-~~~~~~~w~~~StyI~~ 652 (898)
T PTZ00092 575 IDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQ-WNELQV-PKGKLYEWDEKSTYIHN 652 (898)
T ss_pred cccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchh-hhhccC-CCCCccccCCCCCcccC
Confidence 9999999999999999999999999999999988899999999999999999998 999999 99999999 99999999
Q ss_pred CCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccc
Q psy9581 645 PPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTF 724 (903)
Q Consensus 645 ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F 724 (903)
||||+++...|++. ++|.++|||+++||+||||||||||+|+++||||+||.++|+.++||||||+||||||||+||||
T Consensus 653 pp~f~~~~~~~~~~-~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~RgtF 731 (898)
T PTZ00092 653 PPFFQTMELEPPPI-KSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTF 731 (898)
T ss_pred CCCccccccCCCCC-CCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcceec
Confidence 99999998778877 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEe
Q psy9581 725 SNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIA 804 (903)
Q Consensus 725 ~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA 804 (903)
+|+|++|.|+ |.+|++|++.|+|+.++|||+|++|+++|.|+|||||+|||||||||||||++++|||+||||
T Consensus 732 ~Niri~N~l~-------g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA 804 (898)
T PTZ00092 732 ANIRLINKLC-------GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIA 804 (898)
T ss_pred cccceeeeec-------cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEE
Confidence 9999999998 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHH
Q psy9581 805 RSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEI 884 (903)
Q Consensus 805 ~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ 884 (903)
+||+||||+||+|||||||+|.++++++.++++++|+++|+...+.++|+++++++ ..+|+ +|+++++++|+.|+
T Consensus 805 ~SF~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~~l~p~~~v~v~--~~~G~---~~~~~~r~dt~~e~ 879 (898)
T PTZ00092 805 ESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSGELKPGQDVTVK--TDTGK---TFDTILRIDTEVEV 879 (898)
T ss_pred ecHHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEeccccccCCCCeEEEE--eCCCc---EEEEEEeCCCHHHH
Confidence 99999999999999999999999999999999999999997645468999888774 36774 78999999999999
Q ss_pred HHHHhcCcHHHHHHHhhc
Q psy9581 885 KYYQNDGILPFVLRELLN 902 (903)
Q Consensus 885 ei~~aGGll~yv~~~~~~ 902 (903)
+||++||+||||+++++.
T Consensus 880 ~y~~~GGiL~yv~~~~~~ 897 (898)
T PTZ00092 880 EYFKHGGILQYVLRKLVK 897 (898)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 999999999999999875
No 5
>PLN00070 aconitate hydratase
Probab=100.00 E-value=3.7e-250 Score=2184.09 Aligned_cols=879 Identities=50% Similarity=0.880 Sum_probs=827.2
Q ss_pred cccc-ceEeccC-Cce-EEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeE
Q psy9581 5 KTIL-KEFQISE-NKK-GKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPL 81 (903)
Q Consensus 5 ~~~~-~~~~~~~-~~~-~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~ 81 (903)
|+.+ ++|++ + ++. |+||+|++++. .++++||||||||+||+||+++|..+++++|++|++|.+....+.||+|
T Consensus 45 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~---~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f 120 (936)
T PLN00070 45 FKGILTSLPK-PGGGEFGKYYSLPALND---PRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEIPF 120 (936)
T ss_pred hhhhhheeee-cCCCceEEEEEhhhccc---CChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCceecc
Confidence 4445 67888 5 666 99999988753 2699999999999999999999999999999999999988778899999
Q ss_pred EeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHH
Q psy9581 82 IVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIK 161 (903)
Q Consensus 82 ~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk 161 (903)
+|+||+|||+||+||++||||||++++++|+||+++||.+||+||||||||+|.+++++++.+|+.+||+||.|||.|||
T Consensus 121 ~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flk 200 (936)
T PLN00070 121 KPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLK 200 (936)
T ss_pred CCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcccccCCCCcccceeeccccccceecccccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceeee
Q psy9581 162 WGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFL 241 (903)
Q Consensus 162 ~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~ 241 (903)
|++++|+||+|+|||+|||||||+|+||++++.++|+++||++|||||||||+||||+|||||||+|++++|+||++||+
T Consensus 201 w~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~ 280 (936)
T PLN00070 201 WGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 280 (936)
T ss_pred hhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEee
Confidence 99999999999999999999999999999999667899999999999999999999999999999999999999999999
Q ss_pred cCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHH
Q psy9581 242 IPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVN 321 (903)
Q Consensus 242 vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~ 321 (903)
+||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++
T Consensus 281 vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~ 360 (936)
T PLN00070 281 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 360 (936)
T ss_pred CCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCChhhHHHHHHHHHhcccccC---CCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhcccc
Q psy9581 322 YFYNTGRNNLEIKAFESYFKSQKLFGI---PKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPT 398 (903)
Q Consensus 322 YL~~~gR~~~~~~~~~~y~~~~~l~~~---~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~ 398 (903)
||+.|||++++++++++|.|+++||++ +|++|. |+++++||||+|+|+||||++|||++||+++.++|.+++..+.
T Consensus 361 YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~-Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~ 439 (936)
T PLN00070 361 YLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERV-YSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKV 439 (936)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCc-eeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcccc
Confidence 999999999999999999999999994 468999 9999999999999999999999999999999999888775432
Q ss_pred ccCCCccc-c--ccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHH
Q psy9581 399 FKNGFNKD-I--NELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRV 475 (903)
Q Consensus 399 ~~~~~~~~-~--~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~ 475 (903)
+..++..+ . .....++++|....+++|.|++|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~ 519 (936)
T PLN00070 440 GFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGV 519 (936)
T ss_pred cccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 22111100 0 00012335666678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHH
Q psy9581 476 VTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLV 555 (903)
Q Consensus 476 V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~v 555 (903)
|++||+++||+++|+++||+|++||||+|||||++++++++++|.+|+++++||||+||||+||||+..+++|||||++|
T Consensus 520 V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lV 599 (936)
T PLN00070 520 VTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 599 (936)
T ss_pred HHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHhhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCcccc
Q psy9581 556 IAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYN 635 (903)
Q Consensus 556 aA~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 635 (903)
|||||+|+|++|+++||||++++|++|||+||||+.+||++++...++|++|.+.|++++.+++. |++++. |.+.+|+
T Consensus 600 aA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~-w~~l~~-p~~~~~~ 677 (936)
T PLN00070 600 VAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPM-WNQLSV-PSGTLYS 677 (936)
T ss_pred HHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccc-cccCCC-CCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 999999 9999999
Q ss_pred C-CCccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCC
Q psy9581 636 W-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRG 714 (903)
Q Consensus 636 w-~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRg 714 (903)
| ++||||++||||+++...+++. ++|.++|||+++||+||||||||||+|+++||||+||.++|+.++||||||+|||
T Consensus 678 wd~~Styi~~pp~f~~~~~~~~~~-~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRg 756 (936)
T PLN00070 678 WDPKSTYIHEPPYFKNMTMSPPGP-HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRG 756 (936)
T ss_pred CCCCcceeecCCCCCCcCCCCCCC-cCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccC
Confidence 9 9999999999999987777776 7999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhh
Q psy9581 715 NHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGT 794 (903)
Q Consensus 715 N~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~ 794 (903)
|||||+||||+|+|++|+|+ + +++|++|+|+|+|+.++|||+|++|++.|.|+|||||+|||||||||||||++
T Consensus 757 N~evm~rgtFaNir~~N~~~-~-----g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~ 830 (936)
T PLN00070 757 NDEIMARGTFANIRIVNKLL-K-----GEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGP 830 (936)
T ss_pred cchhhhceeccchhhhhhhc-C-----CCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHH
Confidence 99999999999999999998 5 67899999999999999999999999999999999999999999999999999
Q ss_pred hhcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcc--cccCCCceEEEEEEeCCCeEEEEE
Q psy9581 795 KLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGIS--KKIKPLEKIDFIIYRKNGKKIKKI 872 (903)
Q Consensus 795 ~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~--~~l~~g~~i~v~i~~~~G~~~~~~ 872 (903)
++|||+||||+||+||||+||+|||||||+|+++++++.+++.+++.++|+... +.++||+.+++++ .+|+ +|
T Consensus 831 ~~lGvkaVIA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~--~~g~---~~ 905 (936)
T PLN00070 831 MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTT--DNGK---SF 905 (936)
T ss_pred HHhCCcEEEEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEe--CCCe---EE
Confidence 999999999999999999999999999999999999999999888988775321 1488998887654 5673 78
Q ss_pred EEEeecCCHHHHHHHHhcCcHHHHHHHhhc
Q psy9581 873 KLLLRIDTPMEIKYYQNDGILPFVLRELLN 902 (903)
Q Consensus 873 ~~~~~~~t~~e~ei~~aGGll~yv~~~~~~ 902 (903)
++.++++|+.|++||++||+||||++++++
T Consensus 906 ~~~~r~dt~~E~~~~~~GGiL~~v~r~~~~ 935 (936)
T PLN00070 906 TCTLRFDTEVELAYFDHGGILPYVIRNLIK 935 (936)
T ss_pred EEEEeCCCHHHHHHHHcCCHHHHHHHHHhh
Confidence 999999999999999999999999999875
No 6
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=1.3e-246 Score=2140.46 Aligned_cols=846 Identities=39% Similarity=0.719 Sum_probs=800.1
Q ss_pred CceEEEEecc-chhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcH
Q psy9581 16 NKKGKFYSLP-DLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGI 94 (903)
Q Consensus 16 ~~~~~y~~l~-~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~ 94 (903)
++.|+||+|. ++......++++||||||||+||+||+++|..++++ |++|++| +.+.||+|+|+||+|||+||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgv 84 (858)
T TIGR02333 10 GTDLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQ 84 (858)
T ss_pred CCceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCc
Confidence 5679999996 665443347999999999999999999999999888 9999999 457899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCccc-ccchHHHHHHHHHHHhhhhhhhHHHHhhhcCccccc
Q psy9581 95 PLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFR-EKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVI 173 (903)
Q Consensus 95 ~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~-~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~ 173 (903)
||++|||+||++++++|+||++|||.+||+|||||||++|.++ +++++..|+.+||+||.|||+|||||+++|.||+|+
T Consensus 85 pa~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~ 164 (858)
T TIGR02333 85 TALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVI 164 (858)
T ss_pred chhhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEe
Confidence 9999999999999999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred CCCCcccceeeccccccceecccccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcc
Q psy9581 174 PPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGK 253 (903)
Q Consensus 174 ~pg~GI~HqV~~E~la~~~~~~~g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~ 253 (903)
|||+||||||++|+||++++.++|+++||++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+
T Consensus 165 ppG~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~ 244 (858)
T TIGR02333 165 PAGNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGK 244 (858)
T ss_pred CCCCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEee
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhH
Q psy9581 254 LNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEI 333 (903)
Q Consensus 254 L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~ 333 (903)
|++|||||||||+|+++||++|++||+|||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++
T Consensus 245 L~~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~ 324 (858)
T TIGR02333 245 RQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQV 324 (858)
T ss_pred cCCCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccce
Q psy9581 334 KAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKI 413 (903)
Q Consensus 334 ~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (903)
+++|+|.|++++|+++|++|. |+++++||||+|||+||+|++|||++|++++++..... .+. .
T Consensus 325 ~lve~y~k~~~l~~d~d~~a~-Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~~--------~~~-------~- 387 (858)
T TIGR02333 325 KLVETYAKAAGLWADSLKHAV-YERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIAG--------PAE-------E- 387 (858)
T ss_pred HHHHHHHHHHHhhcCcCCCCC-eEEEEEEEcccceecccCCCChhhcCCHHHhhhccccc--------ccc-------c-
Confidence 999999999999988788999 99999999999999999999999999999987631100 000 0
Q ss_pred eccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcC
Q psy9581 414 YITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLG 493 (903)
Q Consensus 414 ~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG 493 (903)
..+| .+.||+|++|||||||||||||+|+||++|+|+|+++|+||+||||++|+|||++|++||+++||+++|+++|
T Consensus 388 ~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aG 464 (858)
T TIGR02333 388 QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLG 464 (858)
T ss_pred cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcC
Confidence 0122 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhccccccCCCCCc
Q psy9581 494 FNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIEPL 573 (903)
Q Consensus 494 ~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl 573 (903)
|+|++||||+|+|+||++.++++++|.++++..++|||+||||+||||+..+++|||||++||||||+|+|++|+++|||
T Consensus 465 f~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dpl 544 (858)
T TIGR02333 465 FGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVL 544 (858)
T ss_pred CEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCcc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC-CCccccCCCCCCCccc
Q psy9581 574 GIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFK 652 (903)
Q Consensus 574 g~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~~styi~~ppff~~~~ 652 (903)
|+|++|++|||+||||+.+||++.++..+++++|++.|++++++++ +++ +.+++|+| |+|||||+||||+++
T Consensus 545 g~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~-----~~~-~~~~~~~w~~~Styi~~pp~f~~~- 617 (858)
T TIGR02333 545 GVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD-----TQS-AVSPLYDWRPMSTYIRRPPYWEGA- 617 (858)
T ss_pred ccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc-----ccc-CcCCCccCCCCCceecCCCCccCC-
Confidence 9999999999999999999999999999999999999998888764 455 67899999 999999999999987
Q ss_pred cccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhh
Q psy9581 653 LKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNL 732 (903)
Q Consensus 653 ~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~ 732 (903)
+.++ ++|++||+|+++||+||||||||||+|+++||||+||+++|+.+++||+||+||||||||+||||+|+|++|+
T Consensus 618 --~~~~-~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 --LAGE-RTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred --CCcc-cCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 3344 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHh
Q psy9581 733 ITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHR 812 (903)
Q Consensus 733 l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~ 812 (903)
|+ +. .+..++|++|+|.|+|+.++|||+|++|+++|.|+|||||+|||||||||||+|+++++||++|||+||+|||+
T Consensus 695 l~-~~-~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~ 772 (858)
T TIGR02333 695 MV-KN-DGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHR 772 (858)
T ss_pred hc-cc-cCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHH
Confidence 98 30 01114799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCc
Q psy9581 813 ANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGI 892 (903)
Q Consensus 813 ~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGl 892 (903)
+||+|||||||+|.+++++++|++++.|+++|.+ +++||+++++++++.+|++. +|++.++++|+.|++|+++||+
T Consensus 773 ~Nl~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~~---~~~p~~~~~v~~~~~~g~~~-~~~~~~r~dt~~ei~y~~~Ggi 848 (858)
T TIGR02333 773 TNLVGMGVLPLEFKPGTNRHTLGLDGTETFDVVG---EITPRADLTLVVTRKNGEKL-EVPVTCRLDTAEEVSVYEAGGV 848 (858)
T ss_pred hhhhhcCcceEEeCCCCChhhcCCCCCeeEEecc---CCCCCCeEEEEEEeCCCCEE-EEEEEEEcCCHHHHHHHHcCCH
Confidence 9999999999999999999999999999999952 47999999999988899887 9999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy9581 893 LPFVLRELLN 902 (903)
Q Consensus 893 l~yv~~~~~~ 902 (903)
||||+|++++
T Consensus 849 L~~v~~~~~~ 858 (858)
T TIGR02333 849 LQRFAQDFLE 858 (858)
T ss_pred HHHHHHHhhC
Confidence 9999999874
No 7
>KOG0452|consensus
Probab=100.00 E-value=1.7e-247 Score=2014.30 Aligned_cols=872 Identities=50% Similarity=0.870 Sum_probs=842.7
Q ss_pred ceEeccCCceEEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEe
Q psy9581 9 KEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILL 88 (903)
Q Consensus 9 ~~~~~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~ 88 (903)
++|+. .+..++||||+++.. .+++||||||+|+|..+||||+..|+++|+++|++|++..+..-||+|+|.||++
T Consensus 14 ~~l~~-~~~~~kyf~l~~l~~----ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpFkPARViL 88 (892)
T KOG0452|consen 14 ETLPK-PGGVYKYFDLPKLNS----RYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPFKPARVIL 88 (892)
T ss_pred hccCC-CCCcceeeecccccc----ccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeeccccceeee
Confidence 56777 666899999999972 6899999999999999999999999999999999999988888899999999999
Q ss_pred ecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcC
Q psy9581 89 QDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFN 168 (903)
Q Consensus 89 qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~ 168 (903)
||+||+||++|||+|||+++++|.||+||||.+|+|||||||+|+|+.++.+++++|+..||+||.|||.||||+.++|+
T Consensus 89 QDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKWgs~af~ 168 (892)
T KOG0452|consen 89 QDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFD 168 (892)
T ss_pred ecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccceeeccccccceecccccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeE
Q psy9581 169 KFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGV 248 (903)
Q Consensus 169 ~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V 248 (903)
|+.++|||+||+||||+|||+|+|+..++++|||.+|||||||||++|||++||||||+|++++|+|||++|.+|+||+.
T Consensus 169 NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~ 248 (892)
T KOG0452|consen 169 NMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGY 248 (892)
T ss_pred ceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheecccceeE
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCC
Q psy9581 249 NLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGR 328 (903)
Q Consensus 249 ~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR 328 (903)
+|+|+|+++||++||+|+|+++||+.|++||||||+|+|+..||+.||+||+||+||||||.||||+|+.|++||+.|||
T Consensus 249 ~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgr 328 (892)
T KOG0452|consen 249 KLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGR 328 (892)
T ss_pred EeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcccccC---CCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCcc
Q psy9581 329 NNLEIKAFESYFKSQKLFGI---PKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNK 405 (903)
Q Consensus 329 ~~~~~~~~~~y~~~~~l~~~---~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~ 405 (903)
+++.++.++.|+|+.+++++ ++.++. |++++++||++|+|+|+||++|+++++|++++.+|+.||+++.+++|++.
T Consensus 329 s~~~~~~i~~yLka~~~f~~~~~~~q~p~-yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai 407 (892)
T KOG0452|consen 329 SEEKLDIIEKYLKAVKMFRDYNDPSQDPV-YTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAI 407 (892)
T ss_pred cHHHHHHHHHHHHHHhhhhhccCcccCcc-eeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccccccccc
Confidence 99999999999999999986 345778 99999999999999999999999999999999999999999999999865
Q ss_pred -c--cccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHH
Q psy9581 406 -D--INELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNN 482 (903)
Q Consensus 406 -~--~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~ 482 (903)
+ +.+..++.++|+.++|+||+|++|+|+||||+|||++|.+|+||||||++.|++|+||+|++++|||..|..||.+
T Consensus 408 ~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~ 487 (892)
T KOG0452|consen 408 APEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSE 487 (892)
T ss_pred ChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhh
Confidence 2 2223356678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhc
Q psy9581 483 SGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAG 562 (903)
Q Consensus 483 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 562 (903)
+|++++|.++||.|+||||++||||+|+|.+++..+|.++++++++|+|+||||+||+||..++||||||++|+||||+|
T Consensus 488 SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaG 567 (892)
T KOG0452|consen 488 SGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAG 567 (892)
T ss_pred ccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC-CCccc
Q psy9581 563 NILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTY 641 (903)
Q Consensus 563 ~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~~sty 641 (903)
++.+|++++|||++++|+.|||+||||+++||+++++++|.|+||++.|+.|..|++. |++|++ |++..|+| |+|||
T Consensus 568 tV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~-Wn~L~~-p~~~Ly~Wd~~STY 645 (892)
T KOG0452|consen 568 TVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPD-WNQLEV-PSSKLYPWDPKSTY 645 (892)
T ss_pred eeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChh-hhhccC-CccceeccCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999998 999999 99999999 99999
Q ss_pred cCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhcc
Q psy9581 642 ISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIR 721 (903)
Q Consensus 642 i~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r 721 (903)
|+.||||++++..+..+ ++|++|++|+.+||+||||||||||+|.++|||++||.++|++|+||||||+||||++||.|
T Consensus 646 I~~ppfF~~mT~~~p~~-~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaR 724 (892)
T KOG0452|consen 646 IKEPPFFEGMTRDLPGP-QSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMAR 724 (892)
T ss_pred ecCCccccccccCCCCc-ccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhc
Confidence 99999999999888777 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeE
Q psy9581 722 GTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKM 801 (903)
Q Consensus 722 ~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~a 801 (903)
|||+|+|+.|+++ ++.|+.|.|.|+||.++|||||++|+++|.+.||+||+.||+||||+|||+++.++||+|
T Consensus 725 GTFANIrlvNkl~-------~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKA 797 (892)
T KOG0452|consen 725 GTFANIRLVNKLL-------SKVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKA 797 (892)
T ss_pred ccchhhHHHHHHh-------cccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHH
Confidence 9999999999999 678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCH
Q psy9581 802 VIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTP 881 (903)
Q Consensus 802 VIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~ 881 (903)
||||||+||||+||++|||+||+|..+++.++|+++|.|.++|...++.|+||+.|+|. ..+|+ .|.++++++|+
T Consensus 798 ViaeS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~~lkPgq~i~v~--~dtGk---~F~~~~rFdte 872 (892)
T KOG0452|consen 798 VIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPENILKPGQDITVT--TDTGK---VFVCTLRFDTE 872 (892)
T ss_pred HHHHHHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcccCCCCceEEEE--ecCCc---EEEEEEEecce
Confidence 99999999999999999999999999999999999999999998766459999988765 45576 68999999999
Q ss_pred HHHHHHHhcCcHHHHHHHhh
Q psy9581 882 MEIKYYQNDGILPFVLRELL 901 (903)
Q Consensus 882 ~e~ei~~aGGll~yv~~~~~ 901 (903)
.|+.|+++||||||+.|++.
T Consensus 873 Veltyy~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 873 VELTYYKNGGILNYMIRKLS 892 (892)
T ss_pred EEEEEEecCCcHHHHHhhcC
Confidence 99999999999999999874
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=8.9e-243 Score=2081.90 Aligned_cols=858 Identities=54% Similarity=0.918 Sum_probs=822.1
Q ss_pred cccccceEeccCCceEEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEe
Q psy9581 4 KKTILKEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIV 83 (903)
Q Consensus 4 ~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~p 83 (903)
++.+++++.+ +++.|+||+|++++..+ .+++||||+|||+||++|+++| +.+++++++.|.+..+...||.++|
T Consensus 2 ~~~~~~~~~~-~~~~~~y~~l~~~~~~~--~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p 75 (861)
T COG1048 2 SFKARKTLTV-GGKTYYYYDLPKLEESG--KISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRP 75 (861)
T ss_pred ccchhhhccc-CCceeEEeehhhhhhcc--ccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCccccccccc
Confidence 3566788999 88999999999998654 6899999999999999999998 7899999999998888999999999
Q ss_pred eEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHH
Q psy9581 84 TRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWG 163 (903)
Q Consensus 84 drvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~ 163 (903)
+||+|||+||+|+++|+++||+++.++|+||+++||.+||+|+|||+++++.++.++|+..|+..||+||.|||+||+||
T Consensus 76 ~RVvmQD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~ 155 (861)
T COG1048 76 ARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWA 155 (861)
T ss_pred ceeeeecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccccCCCCcccceeeccccccceecccccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecC
Q psy9581 164 MQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIP 243 (903)
Q Consensus 164 ~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vP 243 (903)
+|+|+||+|+|||+|||||||+|+||+++|.++|++||||+|||||||||+||||+|||||||+|++++|+|||+||++|
T Consensus 156 ~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP 235 (861)
T COG1048 156 AKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIP 235 (861)
T ss_pred HHhcCCcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHH
Q psy9581 244 DVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYF 323 (903)
Q Consensus 244 evv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL 323 (903)
+||+|+|+|+|++|||||||||+|+++||++|+||||||||||||++||+++|+|||||+|||||||||||+|++|++||
T Consensus 236 ~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL 315 (861)
T COG1048 236 EVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYL 315 (861)
T ss_pred cEEEEEEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHhcccccC-CCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCC
Q psy9581 324 YNTGRNNLEIKAFESYFKSQKLFGI-PKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNG 402 (903)
Q Consensus 324 ~~~gR~~~~~~~~~~y~~~~~l~~~-~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~ 402 (903)
+.|||.+++++++|+|.++|+||+. +|.+|. |+++++||||+|+|+||||++||+++||++++.+|.+.+.+...+.
T Consensus 316 ~~tgR~~~~i~lve~y~~~~~l~~~~~~~~a~-Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~~- 393 (861)
T COG1048 316 RLTGRSEEQVALVEAYAKAQGLWYDPADKDAE-YDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIKR- 393 (861)
T ss_pred HHhCCchHHHHHHHHHHHHhcccCCccccCCc-cceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhccc-
Confidence 9999999999999999999999998 457899 9999999999999999999999999999999999887664321111
Q ss_pred CccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHH
Q psy9581 403 FNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNN 482 (903)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~ 482 (903)
.+.+.++ .+.||+|.+|+|||||||||||+|+||+||||+|+++|++++||||++|+|||++|.+||++
T Consensus 394 ---------~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~ 462 (861)
T COG1048 394 ---------VYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEK 462 (861)
T ss_pred ---------ccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHH
Confidence 1112232 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhc
Q psy9581 483 SGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAG 562 (903)
Q Consensus 483 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 562 (903)
+||+++|+++||.++++||+|||||||+|++++++.|.++++.+++|+|+||||+||+||..+.+|||||++|+||||+|
T Consensus 463 ~Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG 542 (861)
T COG1048 463 AGLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAG 542 (861)
T ss_pred cCCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC-CCccc
Q psy9581 563 NILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTY 641 (903)
Q Consensus 563 ~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~~sty 641 (903)
++++|+++||++.+++|++|||+||||+.+||.+.+.+.+.+++|++.|.++|+ |+.++. +.+++|.| ++|||
T Consensus 543 ~i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~-----w~~~~~-~~~~~y~w~~~sty 616 (861)
T COG1048 543 TINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK-----WNAIEV-PEGPLYDWPNISTY 616 (861)
T ss_pred ccccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc-----cccccC-CCcCcccCCCcCcc
Confidence 999999999999999999999999999999999999999999999999999887 999999 99999999 99999
Q ss_pred cCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhcc
Q psy9581 642 ISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIR 721 (903)
Q Consensus 642 i~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r 721 (903)
|++||||+++...+ ..|+++|+|+++||+||||||||||+|+++||||+||.++||.+.|||+||+||||||||+|
T Consensus 617 i~~pP~f~~~~~~~----~~~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r 692 (861)
T COG1048 617 IRLPPFFDGMGAEP----KPIKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMR 692 (861)
T ss_pred ccCCCccccccccc----cccccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhh
Confidence 99999999886544 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeE
Q psy9581 722 GTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKM 801 (903)
Q Consensus 722 ~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~a 801 (903)
+||+|+|++|+|+ + + +|+||+++|+|+ |||+|++|++.+.|+|||||+|||.||||||||+++++|||+|
T Consensus 693 ~tfaNir~~n~~~-~-----~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~A 762 (861)
T COG1048 693 GTFANIRIRNEMV-P-----G-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKA 762 (861)
T ss_pred hhhcccccccccc-c-----c-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeee
Confidence 9999999999999 4 3 999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCH
Q psy9581 802 VIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTP 881 (903)
Q Consensus 802 VIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~ 881 (903)
|||+||+||||+|||+||+|||+|++++++++|++++.++++|.++. .++|+.++++++++.||.+. ++.+.++++|+
T Consensus 763 VIAeSFeRIHrSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~-~~~p~~~~~v~~~~~dg~~~-~~~~~~r~dt~ 840 (861)
T COG1048 763 VIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE-NLKPGATVTVTVTRGDGPVE-EFPVLCRIDTA 840 (861)
T ss_pred eeehhHHHHHHhhcccceeeeeeccCCCChhhcCCCCceeEeecccc-cCCCCceEEEEEEcCCCceE-EEeeeeecCCH
Confidence 99999999999999999999999999999999999999999998876 78899999999999999887 99999999999
Q ss_pred HHHHHHHhcCcHHHHHHHhhc
Q psy9581 882 MEIKYYQNDGILPFVLRELLN 902 (903)
Q Consensus 882 ~e~ei~~aGGll~yv~~~~~~ 902 (903)
.|++|+++||+|||+++++++
T Consensus 841 ~E~~y~k~GGiL~~v~~~~~~ 861 (861)
T COG1048 841 EEIEYYKAGGILNYVKRDLLK 861 (861)
T ss_pred HHHHHHHcCchHHHHHHHhhC
Confidence 999999999999999999864
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=6.7e-177 Score=1554.03 Aligned_cols=712 Identities=28% Similarity=0.429 Sum_probs=605.6
Q ss_pred HHHHHhhcccCCCCCC---HHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCC
Q psy9581 44 IILESIIRNYDCKKIT---EEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPL 120 (903)
Q Consensus 44 il~E~ilr~~~g~~v~---~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~ 120 (903)
+|.||||+++.++... -.+.. .+++|++|.++|||||+||+||++++++|++| |. ++.+
T Consensus 21 Tl~EKIl~~h~~~~~~~~~~~~~~-------~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~-~~v~--- 82 (745)
T TIGR01340 21 TLAEKILYSHLDDPEESLLSQDIG-------DVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GL-PQVA--- 82 (745)
T ss_pred CHHHHHHHHHhCCccccccccccc-------ccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC-CCCC---
Confidence 7788888887765310 01110 14789999999999999999999999998764 44 3333
Q ss_pred CCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceeccccccc
Q psy9581 121 VPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYY 200 (903)
Q Consensus 121 ~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~ 200 (903)
.|+++++||++|++..+. .|+..+++||.|+|+||+|++++| |++|+|||+||||||++|+ +++
T Consensus 83 ~P~~v~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~ 146 (745)
T TIGR01340 83 VPASIHCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAF 146 (745)
T ss_pred CCCeEEeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccC
Confidence 456899999999765432 468889999999999999999999 9999999999999999998 678
Q ss_pred CC-eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccce
Q psy9581 201 PD-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGK 279 (903)
Q Consensus 201 P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk 279 (903)
|+ ++|||||||||+||||+||||||++|++++|+|+++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||
T Consensus 147 PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~ 226 (745)
T TIGR01340 147 PGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGY 226 (745)
T ss_pred CCCeEEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccce
Confidence 85 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHH-HHHHHHHhcccccCCCcCccccce
Q psy9581 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIK-AFESYFKSQKLFGIPKIGEIDYTD 358 (903)
Q Consensus 280 ~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~-~~~~y~~~~~l~~~~d~~a~~Y~~ 358 (903)
+|||+|+|+++||+++|||||||++|+|||+|+||+|++|++||+.+||++.... .++.|.. .|..+|++|. |++
T Consensus 227 ~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~---~~~~~D~~a~-Y~~ 302 (745)
T TIGR01340 227 IVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF---FKLKADEGAQ-YDE 302 (745)
T ss_pred EEEEeCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc---ccccCCCCCC-eEE
Confidence 9999999999999999999999999999999999999999999999999875322 3333322 2334899999 999
Q ss_pred EEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCC
Q psy9581 359 IITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNT 438 (903)
Q Consensus 359 vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~ 438 (903)
+++||||+|||+||+|++|||++||+|+.+++++ +++ + .+|++|||||||||
T Consensus 303 ~i~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------~g~-----------------~---~~Id~a~IGSCTNg 354 (745)
T TIGR01340 303 LIEIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------NGW-----------------P---EKLSAGLIGSCTNS 354 (745)
T ss_pred EEEEEccceeEeecCCCChhcccChHHhCchhhh--------cCC-----------------C---ceecEEEEEcCCCC
Confidence 9999999999999999999999999999885432 011 1 26889999999999
Q ss_pred CchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHH
Q psy9581 439 SNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEI 518 (903)
Q Consensus 439 s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~ 518 (903)
|+|||+.||.+| |+|+ |++++|+|+++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+|+.+..
T Consensus 355 r~~Dl~~AA~il-k~a~--~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~~----- 426 (745)
T TIGR01340 355 SYEDMSRCASIV-KDAE--QAGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKDD----- 426 (745)
T ss_pred CHHHHHHHHHHh-hhhh--hCCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcCc-----
Confidence 999988777665 5554 46778889999999999999999999999999999999999999999999864321
Q ss_pred HhcCCceEEEEecCCCCCCCCcC-CCCCceEecCHHHHHHHHhhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhh
Q psy9581 519 IINNNIITSSILSGNRNFESRIH-PSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSL 597 (903)
Q Consensus 519 i~~~e~~~~~vsS~NRNF~GR~g-~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~ 597 (903)
+.+||.+ ++|||+||||+|||| +..+++|||||++||||||+|+|++|+++||| ++++|++|||+ ||+.+|+++.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 4467754 789999999999995 45678999999999999999999999999999 69999999998 8999999875
Q ss_pred hhhccCcchhhhcccccCCCCCCCccccccc-ccCccccC-CCccccCCCCCCCccccccCCCcccccCceEEEecCCCC
Q psy9581 598 EKFTLNKNLFYFNYKNIKNNPGKLWSNISDT-VIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSI 675 (903)
Q Consensus 598 ~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~-~~~~~~~w-~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~i 675 (903)
. |. .++.. |+.+... ..+..|+| |+||||++||+|+++ +. .+|.++|||+++||+|
T Consensus 503 ~--------~~-------~~~~~-~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~-~~i~~a~vLlk~gd~i 560 (745)
T TIGR01340 503 G--------FE-------AGRDT-FQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NG-KDLSGLRVLIKVTGKC 560 (745)
T ss_pred c--------cc-------CCccc-eeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----Cc-CCccCCeEEEEECCCc
Confidence 1 21 11223 6655441 26788999 999999998888754 33 6899999999999999
Q ss_pred CcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCC--ceeecCC
Q psy9581 676 TTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGG--FTYYQPS 753 (903)
Q Consensus 676 tTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~--~~~~~~~ 753 (903)
||||||||| .||++ ||+|.|++ .|.+.... +.+++ .+.+.|+
T Consensus 561 TTDHIsPAG---------~~L~~----------------------rg~~~~i~-~n~~~~~~----n~~~~~~~~~~~~~ 604 (745)
T TIGR01340 561 TTDHISAAG---------PWLKY----------------------KGHLDNIS-NNTLIGAV----NAETGEVNKAYDLD 604 (745)
T ss_pred Chhcccccc---------hhHhh----------------------cCChhhhh-cceecccc----cccCCceeEEEcCC
Confidence 999999985 68876 34455554 44443111 12344 5566789
Q ss_pred CchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcccccc
Q psy9581 754 GEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQS 833 (903)
Q Consensus 754 g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~ 833 (903)
|+.++|+++|++|++.+.++|||||+||||||||||||+++++|||+||||+||+||||+||+|||||||+|.++.+++.
T Consensus 605 g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~ 684 (745)
T TIGR01340 605 GSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDK 684 (745)
T ss_pred CCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhh
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999987777775
Q ss_pred cccCCCcEEEEcCcccccCC---CceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHH
Q psy9581 834 LNITGNEYFDLKGISKKIKP---LEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFV 896 (903)
Q Consensus 834 l~l~~~e~i~i~~~~~~l~~---g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv 896 (903)
++.||++.+.+++ ++.| ++.+++++.+.+|+.+ +|++++++ |+.|++||++||+|||+
T Consensus 685 --i~~gd~~~~~~l~-~~~~~~~~~~~~~~i~~~~g~~~-~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 685 --IQPGDEVATLNLY-EMLKNGGGGEVDLRVTKKNGKVF-EIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred --cCCCCEEEEcChh-hccccCCCCeEEEEEEeCCCcEE-EEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 5678888888776 3444 6678888877778777 99999998 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=4.2e-163 Score=1430.32 Aligned_cols=642 Identities=31% Similarity=0.488 Sum_probs=556.5
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
++|.||||.++.+.. ..++|++|.++||||++||.||++++++|++| |.++ ..+|
T Consensus 3 ~Tl~eKIl~~h~~~~--------------~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p--- 57 (646)
T PRK07229 3 LTLTEKILYAHLVEG--------------ELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTE--- 57 (646)
T ss_pred cCHHHHHHHHhcCCC--------------CCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCC---
Confidence 478899998876542 14689999999999999999999999998765 6654 3344
Q ss_pred eEE-EecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccC
Q psy9581 123 VDL-IVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP 201 (903)
Q Consensus 123 v~l-viDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P 201 (903)
..+ ++||++|.. +.+|.++|+|++|++++| |++|+|||+||||||++|+|++++
T Consensus 58 ~~~~~~DH~~~~~---------------~~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~PG--------- 112 (646)
T PRK07229 58 LSVQYVDHNLLQA---------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAFPG--------- 112 (646)
T ss_pred CeEEECCCCCCCC---------------ChhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccCCC---------
Confidence 344 899987764 357899999999999999 999999999999999999854433
Q ss_pred CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEE
Q psy9581 202 DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFV 281 (903)
Q Consensus 202 ~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~v 281 (903)
+++|||||||||+||||+||||||++|++++|+||++||++||||+|+|+|+|++||++|||||+|+++|+.+|++||+|
T Consensus 113 ~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~v 192 (646)
T PRK07229 113 KTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKII 192 (646)
T ss_pred CEEEeCCCCcCcCCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEE
Q psy9581 282 EFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIIT 361 (903)
Q Consensus 282 Ef~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vie 361 (903)
||+|||+++||+++|||||||++|+|||+|+||+|++|++||+.+||.+++.. + .+|++|. |+++++
T Consensus 193 Ef~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~----------l--~~D~~a~-Y~~~i~ 259 (646)
T PRK07229 193 EYFGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE----------L--LADPDAE-YDEVIE 259 (646)
T ss_pred EEECcccccccHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------c--cCCCCCC-eeEEEE
Confidence 99999999999999999999999999999999999999999999998654311 2 2789999 999999
Q ss_pred EECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCch
Q psy9581 362 LNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNP 441 (903)
Q Consensus 362 iDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~ 441 (903)
||||+|||+||+|++|||++||+|+.+ .+|++||||||||||+|
T Consensus 260 iDLs~leP~va~P~~Pd~~~pv~e~~~------------------------------------~~I~~a~IGSCTN~~~~ 303 (646)
T PRK07229 260 IDLSELEPLIAGPHSPDNVVPVSEVAG------------------------------------IKVDQVLIGSCTNSSYE 303 (646)
T ss_pred EEccceeeeeecCCCccceeEhHHhCC------------------------------------CeEEEEEEecCCCCChH
Confidence 999999999999999999999999865 14889999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhc
Q psy9581 442 NLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIIN 521 (903)
Q Consensus 442 dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~ 521 (903)
|+++||+|| +|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. +
T Consensus 304 Dl~~aA~iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~~-------~ 369 (646)
T PRK07229 304 DLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-PA-------T 369 (646)
T ss_pred HHHHHHHHh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-CC-------C
Confidence 999999999 899999999999999999999999999999999999999999999999998543 22 3
Q ss_pred CCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhc
Q psy9581 522 NNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFT 601 (903)
Q Consensus 522 ~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~ 601 (903)
|+ ++|||+||||+||||++.+.+|||||++||||||+|+|+ |++++|++. |++++|+ ||+. +.
T Consensus 370 ~~---~~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~ 432 (646)
T PRK07229 370 GN---VSLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FA 432 (646)
T ss_pred Cc---EEEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------cc
Confidence 55 689999999999999998999999999999999999999 999999976 8999996 7862 33
Q ss_pred cCcchhhhcccccCCCCCCCcccccccccCccccCCCccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccc
Q psy9581 602 LNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHIS 681 (903)
Q Consensus 602 ~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIs 681 (903)
+++.+|.+ +++. |++++. +.++||+++|+|+++ .++.++++|+++||||||||||
T Consensus 433 ~~~~~~~~-------~~~~-~~~~~~---------~~~p~~~~~~~~~~~--------~~~~~~~vl~~~gd~i~TD~I~ 487 (646)
T PRK07229 433 VDDAGIIA-------PAED-GSDVEV---------VRGPNIKPLPLLEPL--------PDLLEGKVLLKVGDNITTDHIM 487 (646)
T ss_pred CChhhhcC-------CCcc-cccccc---------cCCCCCCCCccCCCC--------CcCceEEEEEEcCCCCChhccC
Confidence 45555543 2334 777766 445678888887654 4678999999999999999999
Q ss_pred cCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHH
Q psy9581 682 PAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYN 761 (903)
Q Consensus 682 PaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~ 761 (903)
|+|. +||+ +|+|++.|.+++|.+.+ + +|.
T Consensus 488 Pa~~--------~~l~--------------~r~~~~~l~~~~f~~~~--~--------------~f~------------- 516 (646)
T PRK07229 488 PAGA--------KWLP--------------YRSNIPNISEFVFEGVD--N--------------TFP------------- 516 (646)
T ss_pred cCCc--------chhc--------------cCCCHHHHHHHHhccCC--h--------------hhh-------------
Confidence 9853 3664 58999999999998531 2 121
Q ss_pred HHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcE
Q psy9581 762 AAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEY 841 (903)
Q Consensus 762 aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~ 841 (903)
.+++..+ ++|||||+|||||||||||+|+++++||+||||+||+|||||||+|+|||||+|.++++++. ++.+|+
T Consensus 517 --~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~--l~~gd~ 591 (646)
T PRK07229 517 --ERAKEQG-GGIVVGGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDK--IEEGDV 591 (646)
T ss_pred --HHHHhcC-CcEEEecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhh--cCCCCE
Confidence 1344333 69999999999999999999999999999999999999999999999999999976666664 677999
Q ss_pred EEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHhh
Q psy9581 842 FDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901 (903)
Q Consensus 842 i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~~ 901 (903)
++|.+++ ++.++.+|++++.+ +|+ +|++++++ |+.|++|+++||+|||+++++.
T Consensus 592 i~i~dl~-~~~~~~~v~v~~~~-~~~---~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 592 LEIEDLR-EFLPGGPLTVVNVT-KDE---EIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred EEEccch-hcCCCCeEEEEEec-CCE---EEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 9995555 35566677766543 353 67777777 9999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=5.2e-161 Score=1409.77 Aligned_cols=650 Identities=29% Similarity=0.425 Sum_probs=548.8
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCe
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPV 123 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v 123 (903)
+|.||||.++.+.. ..++|++|.++||+|++||+||++++.+|++| |. + ++.|+ .+
T Consensus 1 Tl~eKIl~~h~~~~--------------~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~-~-~v~~~-~~ 56 (658)
T TIGR01342 1 TLAEKIIDDHLVEG--------------DLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EM-D-EVKTE-LA 56 (658)
T ss_pred CHHHHHHHHhhCCC--------------CCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CC-C-ccCCC-Ce
Confidence 47899998877642 13689999999999999999999999998765 33 2 34454 36
Q ss_pred EEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccC-C
Q psy9581 124 DLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP-D 202 (903)
Q Consensus 124 ~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P-~ 202 (903)
++++||++|+.+ .+|.++|+||+|++++| ++.++|||+||||||++|+| +.| +
T Consensus 57 ~~~~DH~~~~~d---------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~----------a~PG~ 110 (658)
T TIGR01342 57 AQYCDHNMLQFD---------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENF----------AAPGK 110 (658)
T ss_pred EEECCCCCCCCC---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhc----------cCCCC
Confidence 789999988753 15779999999999998 77899999999999999984 455 7
Q ss_pred eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEE
Q psy9581 203 IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVE 282 (903)
Q Consensus 203 ~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vE 282 (903)
++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+||
T Consensus 111 ~ivGtDSHT~t~GalG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vE 190 (658)
T TIGR01342 111 TLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFE 190 (658)
T ss_pred EEEecCcCcCCCCcccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEE
Q psy9581 283 FFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITL 362 (903)
Q Consensus 283 f~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~viei 362 (903)
|+|||+++||+++|||||||++|+|||+|+||+|++|++||+.++|.+++.. | .+|++|. |+++++|
T Consensus 191 f~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l--~~D~~a~-Y~~~i~i 257 (658)
T TIGR01342 191 YFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L--LADADAE-YADEIEI 257 (658)
T ss_pred EecCCcCccCHHHHhhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c--cCCCCCc-EEEEEEE
Confidence 9999999999999999999999999999999999999999999998654321 2 2889999 9999999
Q ss_pred ECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCchH
Q psy9581 363 NLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPN 442 (903)
Q Consensus 363 DLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~d 442 (903)
|||+|||+||+|++|||++||+|+.+ . +|+++|||||||||++|
T Consensus 258 Dls~leP~va~P~~Pd~v~~v~e~~g--------------~----------------------~id~v~IGSCTn~~~~D 301 (658)
T TIGR01342 258 DLSDLEPLIAEPHMPDNVVPVREIAG--------------I----------------------EVDQVMIGSCTNGAFED 301 (658)
T ss_pred EccceeeeeeCCCCCCCeeEhHHhCC--------------c----------------------eeeeEEEeCCCCCChHH
Confidence 99999999999999999999999765 1 46789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcC
Q psy9581 443 LMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINN 522 (903)
Q Consensus 443 l~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~ 522 (903)
|++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+. ++
T Consensus 302 l~~aA~il------~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~ 367 (658)
T TIGR01342 302 LLPAAKLL------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SD 367 (658)
T ss_pred HHHHHHHh------CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CC
Confidence 99999999 89999999999999999999999999999999999999999999999999965432 34
Q ss_pred CceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhccccccCCCCCcccCCCCCeeecCCC-CCChhhhhhhhhhc
Q psy9581 523 NIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDI-WPSTEEINSLEKFT 601 (903)
Q Consensus 523 e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~d~-wP~~~ei~~~~~~~ 601 (903)
+ ++|||+||||+||||++.+.+|||||++||||||+|+|+ |+.. ++. .+| |+ ||+.+
T Consensus 368 ~---~~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~--l~~-~~g------~~~~p~~~--------- 425 (658)
T TIGR01342 368 G---VSLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEII-DPRD--LAD-DEG------DLEAIGFE--------- 425 (658)
T ss_pred c---EEEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCcC-CHHH--hcc-ccC------cccCCCCC---------
Confidence 4 689999999999999988899999999999999999995 5542 322 234 34 88553
Q ss_pred cCcchhhhcccccCCCCCCCcccccccccCccccCCCccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccc
Q psy9581 602 LNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHIS 681 (903)
Q Consensus 602 ~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIs 681 (903)
.|+.|...|...+ |+.++. ..++..+--.|+||+++|+|+++. .++++ |+++++|||||||||+
T Consensus 426 -~p~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~p~i~~~p~~~~~~-------~~i~g-rv~~~~gDnI~TD~I~ 489 (658)
T TIGR01342 426 -MGEKFPGGYDAAD------IDIIPK-EEREDDDIIKGPNIKPLPEFDPLG-------ADIEG-ETALIMEDNITTDHII 489 (658)
T ss_pred -Cchhhcccccccc------cccCCC-CCCCCcceeeCCCCCCCCCCCCCc-------cccCc-eEEEEcCCCCChhcCC
Confidence 2344554444321 444332 111111113377899999998762 35666 9999999999999999
Q ss_pred cCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHH
Q psy9581 682 PAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYN 761 (903)
Q Consensus 682 PaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~ 761 (903)
|+|.+ || ..|+|.+.+.+++|..+ +. .+.+
T Consensus 490 Pa~~~--------~l--------------~~r~~~~~l~~~~~~~~-------------------------~p---~f~~ 519 (658)
T TIGR01342 490 PAGAD--------IL--------------KFRSNIEAISEFTLHRI-------------------------DD---EFAE 519 (658)
T ss_pred CCCcc--------cc--------------ccCCCHHHHhhheeeCC-------------------------Cc---hHHH
Confidence 99542 34 13788898888888632 11 1346
Q ss_pred HHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcE
Q psy9581 762 AAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEY 841 (903)
Q Consensus 762 aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~ 841 (903)
++++|++.+.++|||||+|||||||||||+|+++++||+||||+||+|||+|||+|+|||||+|++++++++ ++.||+
T Consensus 520 ~~~~~~~~~~~~iiVaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~--i~~Gd~ 597 (658)
T TIGR01342 520 RAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAK--FELGDD 597 (658)
T ss_pred HhhcccccCCceEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHH--hCCCCE
Confidence 788898888899999999999999999999999999999999999999999999999999999997777775 566999
Q ss_pred EEEcC-cccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHhh
Q psy9581 842 FDLKG-ISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901 (903)
Q Consensus 842 i~i~~-~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~~ 901 (903)
++|++ +++.++||+..++. +..+|. ++.+.+.+ |+.|++|+++||||||++++..
T Consensus 598 l~id~~l~~~~~~g~~~~i~-~~~~g~---~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~ 653 (658)
T TIGR01342 598 IEIPDDLAAALADGEDEFTI-NKNDDE---EALATLDA-SEREKEILAAGGKLNLIKNKHR 653 (658)
T ss_pred EEECchhhhhcCCCCceEEE-EecCCe---EEEEeCCC-CHHHHHHHHcCCHHHHHHHhhc
Confidence 99985 66568888655543 334553 44554443 9999999999999999999865
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=4.7e-147 Score=1289.29 Aligned_cols=663 Identities=24% Similarity=0.314 Sum_probs=510.4
Q ss_pred HHHHHHhhcccC-----CCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCcc
Q psy9581 43 RIILESIIRNYD-----CKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKI 117 (903)
Q Consensus 43 ril~E~ilr~~~-----g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v 117 (903)
++|.||||.++. |+. .++|++|.++||++|+||.|+++++. |.+ +|. ++..
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~---------------v~~G~~i~i~vD~~l~hD~t~p~~~~-~~~-------~g~-~~V~ 57 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKF---------------VHSGDYVSIKPAHCMSHDNSWPCALK-FMG-------IGA-SKIH 57 (712)
T ss_pred CCHHHHHHHHhcccccCCcc---------------cCCCCEEEEecCEEEEEeccHHHHHH-HHH-------cCC-CccC
Confidence 367888887765 321 36899999999999999999999754 533 455 4566
Q ss_pred CCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccc
Q psy9581 118 EPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDN 197 (903)
Q Consensus 118 ~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g 197 (903)
+|+ ++++++||++|.... +|.+.|+||+..+++| +++|+|||+||||||++|+ |
T Consensus 58 ~p~-~~v~~~DH~v~~~~~---------------~~~~~~~~l~~fAkk~-Gi~f~~~g~GI~Hqv~~E~---------g 111 (712)
T TIGR00139 58 NPD-QIVMTLDHDIQNKSD---------------KNLKKYKNIEEFAKKH-GIDFYPAGRGIGHQIMIEE---------G 111 (712)
T ss_pred CCC-CEEEEcCCCCCCCCH---------------HHHHHHHHHHHHHHHh-CCeEECCCCCeEeEeeccc---------C
Confidence 665 468899999997642 2344556666656665 8999999999999999997 6
Q ss_pred cccCC-eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCc
Q psy9581 198 IYYPD-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNV 276 (903)
Q Consensus 198 ~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~ 276 (903)
+++|+ ++|||||||||+||||+||||||++|++++|+||++||+|||+|+|+|+|+|++||++|||||+|+++|+.+|+
T Consensus 112 ~a~PG~~ivGsDSHT~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~ 191 (712)
T TIGR00139 112 FAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDV 191 (712)
T ss_pred cccCCeEEEccCcCcCccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCc
Confidence 89995 67999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEec--CcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChh------------hHH----HHHH
Q psy9581 277 VGKFVEFFG--DGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNL------------EIK----AFES 338 (903)
Q Consensus 277 ~gk~vEf~G--~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~------------~~~----~~~~ 338 (903)
+||+|||+| +|+++||+++|+|||||++|+|||+|+||+|++|++||+.++|... ..+ .+++
T Consensus 192 ~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 271 (712)
T TIGR00139 192 LNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEE 271 (712)
T ss_pred ceEEEEEecCcchhhcCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999875311 001 1222
Q ss_pred HHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCC
Q psy9581 339 YFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKN 418 (903)
Q Consensus 339 y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (903)
|.. +.| .+|++|. |+++++||||+|+|+||+|++|++++||+++...
T Consensus 272 ~~~-~~l--~aD~~A~-Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~----------------------------- 318 (712)
T TIGR00139 272 KAE-IPL--KADKDAH-YAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ----------------------------- 318 (712)
T ss_pred Hhh-ccC--CCCCCCC-EEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc-----------------------------
Confidence 211 122 3899999 9999999999999999999999999999987320
Q ss_pred ceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhC---CCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCE
Q psy9581 419 GIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKF---GLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFN 495 (903)
Q Consensus 419 ~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~---G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~ 495 (903)
+-+|++||||||||+|++||++||++|+++|+++ |+||+|+||++|+|||++|+++|+++|++++|.+|||.
T Consensus 319 -----~~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~ 393 (712)
T TIGR00139 319 -----DIKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAI 393 (712)
T ss_pred -----CceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCE
Confidence 1257899999999999999999999998888876 38999999999999999999999999999999999999
Q ss_pred EeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhccccccCCCCCccc
Q psy9581 496 IVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGI 575 (903)
Q Consensus 496 i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~ 575 (903)
|.+||||+|+|+++++++ +|| ++|||+||||+||||++.+.+|||||++||||||+|+|+ ||..+
T Consensus 394 i~~~gCg~CiG~~~~~~~-------~ge---v~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~ 458 (712)
T TIGR00139 394 PLPAGCGPCIGLGAGLLE-------PGE---VGISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEV 458 (712)
T ss_pred EcCCccccccCcCCCCCC-------CCC---EEEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHH
Confidence 999999999999977654 466 579999999999999998999999999999999999999 66433
Q ss_pred CC-CCCeeecCCCCCChhhhhhhhhhccCcchhhhccccc-CCC--CCCCcccccccccCccccCCCccccCC--CCCCC
Q psy9581 576 DK-NGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNI-KNN--PGKLWSNISDTVIDNIYNWPISTYISQ--PPFFN 649 (903)
Q Consensus 576 ~~-~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~-~~~--~~~~w~~~~~~~~~~~~~w~~styi~~--ppff~ 649 (903)
.. .+-+- +.--||+..+.+ ....++.+++...-..+ ... .+. -.++.. |++.-+.+ .|.++
T Consensus 459 ~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~ 525 (712)
T TIGR00139 459 LSPEGWTE-IIFGEGDGIKEE--DRMLTNEEALEKIIGIIDDLVADEEK-NAASEA---------PAQEESEQGLTEILE 525 (712)
T ss_pred hccccccc-ccccccccccCc--ccccCcHHHHhhhhhhccCccccchh-cccccc---------cccchhccCCCCcCC
Confidence 21 00000 000011111111 11223344442110000 000 000 011111 11111111 23333
Q ss_pred ccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccch
Q psy9581 650 NFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRI 729 (903)
Q Consensus 650 ~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~ 729 (903)
++ | ..| ..+++++.|||||||||+|+ +||....+++ +.|.+++|.+.+
T Consensus 526 ~~---~----~~i-~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~~~-------------~~l~~~~~~~~d- 573 (712)
T TIGR00139 526 GF---P----EEF-SGELVFCDADNINTDGIYPG----------KYTYQDDVPK-------------EKMAQVCMENYD- 573 (712)
T ss_pred CC---C----ceE-EEEEEEcCCCCCchhhccch----------hhcccCCCCH-------------HHHHHhhccCCC-
Confidence 32 2 234 45999999999999999997 7874322333 355677787431
Q ss_pred hhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhH
Q psy9581 730 KNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFER 809 (903)
Q Consensus 730 ~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~r 809 (903)
.+|. .++ ..++|||||+|||||||||||+|+++.+||+||||+||+|
T Consensus 574 ---------------p~f~---------------~~~---~~g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFar 620 (712)
T TIGR00139 574 ---------------AEFR---------------TKA---HEGDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGN 620 (712)
T ss_pred ---------------cchh---------------hcC---CCCCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHH
Confidence 1221 123 2358999999999999999999999999999999999999
Q ss_pred HHhhhhccCccceEEecCcccccccc-----------cCCCcEEEEcCcccccCCCceEEEEEEeCCC----eEEEEEEE
Q psy9581 810 IHRANLIGMGILPLQFLNNDSIQSLN-----------ITGNEYFDLKGISKKIKPLEKIDFIIYRKNG----KKIKKIKL 874 (903)
Q Consensus 810 I~~~N~~~~Gllpl~~~~~~~~~~l~-----------l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G----~~~~~~~~ 874 (903)
||+||++|+|||||+|++. .+.+. ...||++++|..+ | .| ++ ++| ++ ++.+
T Consensus 621 If~rN~iN~Gl~~l~~~~~--~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~-----g-~i--~~--t~g~~~~~~--~~~~ 686 (712)
T TIGR00139 621 IFSRNSINNALLGLEIPAL--IKKLREKFGGADKELTRRTGWFLKWDVAD-----A-KI--EV--QEGSLDGGP--ILEH 686 (712)
T ss_pred HHHhHHHhcCCceEEchhH--HHHHHhhhcccccccccCCCCEEEEEccC-----C-EE--EE--CCCcccccc--eeEE
Confidence 9999999999999999853 22221 1268888888533 3 23 22 233 31 4567
Q ss_pred EeecCCHHHHHHHHhcCcHHHHHHHh
Q psy9581 875 LLRIDTPMEIKYYQNDGILPFVLREL 900 (903)
Q Consensus 875 ~~~~~t~~e~ei~~aGGll~yv~~~~ 900 (903)
++.+++++.++|+.+|||++|+++++
T Consensus 687 ~~~~~p~~~~eii~~GGl~~~~k~~~ 712 (712)
T TIGR00139 687 KVGELGKNLQEIIAKGGLEGWVKNAI 712 (712)
T ss_pred EcCCCCHHHHHHHHcCCHHHHHHhcC
Confidence 78889999999999999999999875
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=3.6e-146 Score=1287.50 Aligned_cols=689 Identities=21% Similarity=0.276 Sum_probs=537.1
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCC
Q psy9581 42 IRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLV 121 (903)
Q Consensus 42 ~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~ 121 (903)
-.+|.||||.++.+. .+|+.|.+++|++++||.|+++++..|.+ +|. +++ | +
T Consensus 34 ~~TlaeKIL~~h~~~-----------------~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-------~G~--~~v-p-~ 85 (751)
T PRK11413 34 KGTIAWSILSSHNTS-----------------GNMDKLKIKFDSLASHDITFVGIIQTAKA-------SGM--ERF-P-L 85 (751)
T ss_pred hCCHHHHHHHHhhCC-----------------CCCCEEEEEcceeeeehhhHHHHHHHHHH-------cCC--CcC-C-C
Confidence 348888888877653 36788999999999999999999887754 465 345 4 6
Q ss_pred CeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccC
Q psy9581 122 PVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP 201 (903)
Q Consensus 122 ~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P 201 (903)
|+++++||++|+...+. .|.+.|.|++.++++| ++.|+|||+||||||++|+| +.|
T Consensus 86 ~~v~~~DH~~~~~~g~~-------------~n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~----------a~P 141 (751)
T PRK11413 86 PYVLTNCHNSLCAVGGT-------------INEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMM----------AGG 141 (751)
T ss_pred CEEEECCCCCcCCCCCC-------------ccHHHHHHHHHHHHHc-CCcEECCCCCeECcCchhhc----------cCC
Confidence 89999999999864332 2446677888777787 77899999999999999984 455
Q ss_pred -CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCc-cce
Q psy9581 202 -DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNV-VGK 279 (903)
Q Consensus 202 -~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~-~gk 279 (903)
+++|||||||| +||||+||||||++|++.+|+|+++|+++||+|+|+|+|+|++||+||||||+|+++|+.+|+ +||
T Consensus 142 G~~ivGtDSHT~-~GalG~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k 220 (751)
T PRK11413 142 GKMILGSDSHTR-YGALGTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNK 220 (751)
T ss_pred CcEEEeeCcCcc-cchhhhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccce
Confidence 69999999996 899999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred EEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceE
Q psy9581 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDI 359 (903)
Q Consensus 280 ~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~v 359 (903)
+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.+++ . .| .+|++|. |+++
T Consensus 221 ~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~-------~---~l--~~D~~A~-Yd~~ 287 (751)
T PRK11413 221 VMEFVGPGVSALSTDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDY-------C---EL--NPQPMAY-YDGC 287 (751)
T ss_pred EEEEECCccccCCHhHHhhhhhcccccCceEEEecCcHHHHHHHHhCCChhhc-------e---ec--cCCCCCC-eeEE
Confidence 99999999999999999999999999999999999999999999999987542 1 12 3899999 9999
Q ss_pred EEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeee--cCcEEEEEeeccCC
Q psy9581 360 ITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIK--NGDILIAAITSCTN 437 (903)
Q Consensus 360 ieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~V~~a~IgSCTN 437 (903)
++||||+|||+||+|++|||++||+|+..++.++++... +.+... ....+.++ ...+|. .-+|++||||||||
T Consensus 288 ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~~-~~~~~~---~~~~~~~~-~~~ki~~~~~~Idq~~IGSCTN 362 (751)
T PRK11413 288 ISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVE-IESERV---AHGKAKLS-LLDKIENGRLKVQQGIIAGCSG 362 (751)
T ss_pred EEEEcccceeeecCCCChhhCcChhhcccchhhhcchhh-hhhhhh---hhhhcccc-ccccccCCCcEeeeEEEecCCC
Confidence 999999999999999999999999999988887776532 111100 00011111 011333 44789999999999
Q ss_pred CCchHHHHHHHHHHHHHHhCCCccC-CceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHH
Q psy9581 438 TSNPNLMLSAGLLAKKAVKFGLEIS-PKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIE 516 (903)
Q Consensus 438 ~s~~dl~~aA~lLa~~av~~G~kv~-~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~ 516 (903)
||++||+.||+|| +|++|+ ++||++|+|||++|+++|+++|++++|.+|||.|.+||||+|+|+++. +.
T Consensus 363 g~~eDl~~AA~IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~--- 432 (751)
T PRK11413 363 GNYENVIAAANAL------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA--- 432 (751)
T ss_pred CCHHHHHHHHHHh------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC---
Confidence 9999999999999 899998 569999999999999999999999999999999999999999998654 22
Q ss_pred HHHhcCCceEEEEecCCCCCCCCcCCCCCc-----eEecCHHHHHHHHhh-ccccccCCCCCcccCCCCCeeecCCCCCC
Q psy9581 517 EIIINNNIITSSILSGNRNFESRIHPSIYA-----NFLASPPLVIAYAIA-GNILVDLTIEPLGIDKNGKKIYLNDIWPS 590 (903)
Q Consensus 517 ~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~-----~yLaSP~~vaA~Ala-G~I~~d~~~~plg~~~~G~~v~l~d~wP~ 590 (903)
+++ +||+|+||||+||||++.++ +||+||+++||+|+. |+|+ +|..++. ++
T Consensus 433 ----~ge---~~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~- 489 (751)
T PRK11413 433 ----NNG---LSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD- 489 (751)
T ss_pred ----CCC---EEEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc-
Confidence 456 58999999999999998876 677779999999999 6999 5643321 11
Q ss_pred hhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccCCCccccCCCCCCCccccccCCCcccccCceEEEe
Q psy9581 591 TEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKFEYFPKNIKGARALCI 670 (903)
Q Consensus 591 ~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~ 670 (903)
+.++ +.++..+|.. ++|.++.+.-.+++. ..+ || |+.-|-++.+ + +-..++|+.|
T Consensus 490 --~~p~---~~~~~~~y~~---~~~~~~~~~~~~~~~-~~g-----Pn---i~~~p~~~~l---~-----~~~~~kv~~k 544 (751)
T PRK11413 490 --NVPE---YAFDVTPYKN---RVYQGFGKGATQQPL-IYG-----PN---IKDWPEMGAL---T-----DNILLKVCSK 544 (751)
T ss_pred --cCCC---cccCcccccc---ccccCCCCCCCcceE-EeC-----cC---CCCCCCCCCC---C-----CcEEEEEEEE
Confidence 2222 4566665553 122221110112332 112 33 3322222222 2 2335699999
Q ss_pred cCCCCC-cCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCcee
Q psy9581 671 LGDSIT-TDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTY 749 (903)
Q Consensus 671 ~gd~it-TDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~ 749 (903)
++|||| ||||+||| +|| +.|||.+-+++++|.. ..|......+... +...
T Consensus 545 ~~D~itTTD~i~paG---------~~l--------------~~Rsn~~~is~~~~~~--~d~~~~~ra~~~~----~~~~ 595 (751)
T PRK11413 545 ILDPVTTTDELIPSG---------ETS--------------SYRSNPLGLAEFTLSR--RDPGYVGRSKAVA----ELEN 595 (751)
T ss_pred eCCCCccccccccCC---------Ccc--------------ccccCHHHHhhhhccc--cChhhHHHHHHHh----hhhh
Confidence 999997 99999995 566 3599999999999963 2333321000000 0000
Q ss_pred ecCCCchhhHHHHHHHh--------------hhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHH-Hhhh
Q psy9581 750 YQPSGEKMSIYNAAMKY--------------ISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERI-HRAN 814 (903)
Q Consensus 750 ~~~~g~~~~i~~aA~~y--------------~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI-~~~N 814 (903)
....|. +.+.|+.| ++.+.++||++ .||||||||||||+++++|||+||||+||+|| ||+|
T Consensus 596 ~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsN 671 (751)
T PRK11413 596 QRLAGN---VSELTEVFARIKQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSN 671 (751)
T ss_pred hhhcCC---cHHHHHHHHhhhhccccccccccccCceEEEEE-eCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhh
Confidence 112222 23444444 45566565555 99999999999999999999999999999999 5559
Q ss_pred hccCccceEEecCcccccccccCCCcEEEEcCcccccCCC-ceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcH
Q psy9581 815 LIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPL-EKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGIL 893 (903)
Q Consensus 815 ~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g-~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll 893 (903)
|||+|||||+|++.. .++.||+++|+++++.+..+ +.++..+.+.+|++. .+++.+..+|+++++||++||+|
T Consensus 672 lIN~GilpL~f~~~~-----~i~~GD~l~id~~~~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~eil~aGGll 745 (751)
T PRK11413 672 VINWGMLPFQMAEEP-----TFEVGDYIYIPGIRAALDNPGTTFKGYVIHEDAPVT-EITLYMESLTAEEREIIKAGCLI 745 (751)
T ss_pred hhhcCccceecCchh-----hCCCCCEEEEechhhhhhcCCCceeEEEEeCCCcee-eEEEEeCCCCHHHHHHHHcCCHH
Confidence 999999999998653 58899999999876555443 466666666665554 78888877899999999999999
Q ss_pred HHHHH
Q psy9581 894 PFVLR 898 (903)
Q Consensus 894 ~yv~~ 898 (903)
||+++
T Consensus 746 ny~k~ 750 (751)
T PRK11413 746 NYNKN 750 (751)
T ss_pred HHhhc
Confidence 99986
No 14
>KOG0453|consensus
Probab=100.00 E-value=1.7e-143 Score=1198.85 Aligned_cols=692 Identities=30% Similarity=0.463 Sum_probs=593.9
Q ss_pred CCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHH
Q psy9581 73 DLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKR 152 (903)
Q Consensus 73 ~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~r 152 (903)
.+.++++.++||||+|||.|..||+++|.. .|.. ++ .+|..+++||.+.+...+..| +.+....
T Consensus 79 ~Rg~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~--kv--avPstIhCdhli~a~~gg~~D-----l~~a~~~ 142 (778)
T KOG0453|consen 79 VRGGSYLKLRPDRVAMQDASAQMALLQFMS-------SGLK--KV--AVPSTIHCDHLIEAQVGGDKD-----LQRASDL 142 (778)
T ss_pred ecccceEEEcccceecccchhhHHHHHHHh-------cCcc--cc--cCCceEEecceeeeccCCcch-----hhhhhhh
Confidence 467899999999999999999999999843 3553 22 257799999999887666544 5566788
Q ss_pred hhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCC-eEEecCCCCCcccccceeeccCChHHHHH
Q psy9581 153 NKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVGGIEAEA 231 (903)
Q Consensus 153 n~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~ 231 (903)
|.|.|+||..+.++| |+.||+||.||+||+++|+ |+||+ ++|||||||+++||||+|++||||+|+++
T Consensus 143 Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlEn----------YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvd 211 (778)
T KOG0453|consen 143 NKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVD 211 (778)
T ss_pred hHHHHHHHHHHHHhc-CCCccCCCCceeeeeeeec----------ccCCcceEEeccCCCCCCCccceeeeccccchHHH
Confidence 999999999999998 9999999999999999998 89995 78999999999999999999999999999
Q ss_pred HHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceee
Q psy9581 232 GMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIG 311 (903)
Q Consensus 232 am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g 311 (903)
+|+++||.++.|++++|+|+|+|+.|+++|||||++++.|..+|++|++||||||||.+||++.|+|||||++|.|||+|
T Consensus 212 vmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs 291 (778)
T KOG0453|consen 212 VMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTS 291 (778)
T ss_pred HhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhH
Q psy9581 312 FFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFT 391 (903)
Q Consensus 312 ~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~ 391 (903)
+||.|+++++||+.+||.+ +.+..++|.++ +. .+|++|. |+++|+||||+|+|.|.||++||-..|++++....+
T Consensus 292 ~FP~n~~m~~yL~atgr~~-ia~~a~~~~~~--~l-~AD~~a~-Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~ 366 (778)
T KOG0453|consen 292 LFPYNERMIDYLQATGRNE-IAREARETLDA--IL-AADKGAH-YDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE 366 (778)
T ss_pred ccCCCHHHHHHHHHhCccc-chhhhHHhhhh--cc-cCCCCCC-cceEEEEEhhhcccccCCCCCccccChHHHHhHHhh
Confidence 9999999999999999985 34555666555 22 3899999 999999999999999999999999999999876321
Q ss_pred HhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEec
Q psy9581 392 ELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTP 471 (903)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~P 471 (903)
.++|+ + +|..++||||||+||+|+-.+|.++ ++|..+| ++|.|.+.|+|
T Consensus 367 --------kn~wp-----------------~---~i~~gligSCTNSsyeDm~raa~iv-~~a~~~g--lk~~v~F~Vtp 415 (778)
T KOG0453|consen 367 --------KNGWP-----------------I---KIKVGLIGSCTNSSYEDMSRAADIV-KQAKGKG--LKPKVPFYVTP 415 (778)
T ss_pred --------hcCCc-----------------e---eeeeeEEEeecCccHHHHHHHHHHH-HHHHhcC--CCCCcceEecc
Confidence 12332 1 3567999999999999999988875 7786666 55669999999
Q ss_pred CCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCC-CceEec
Q psy9581 472 GSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSI-YANFLA 550 (903)
Q Consensus 472 gS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~-~~~yLa 550 (903)
||.+|...++++|++++|.++|+.+++.+||||||+|.. +.|++||. .+.|+|+||||.|||+.+. ...||+
T Consensus 416 gSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r------~dvk~GE~-ntivts~NRNFtgRnd~np~t~aflt 488 (778)
T KOG0453|consen 416 GSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDR------KDIKKGEK-NTIVTSYNRNFTGRNDANPATHAFLT 488 (778)
T ss_pred ChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccc------ccccCCCc-CceeeeecccccccCCCCcchhhccc
Confidence 999999999999999999999999999999999999954 23678885 4789999999999999887 679999
Q ss_pred CHHHHHHHHhhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCccccccccc
Q psy9581 551 SPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVI 630 (903)
Q Consensus 551 SP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~ 630 (903)
||++|+|+||+|++.+|+++|.+ ...+|+.+.|+. |..+|+++ ..+++.. ..|+.. +.+..
T Consensus 489 SP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g~--~ty~ap-~~~~~---------- 549 (778)
T KOG0453|consen 489 SPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPGQ--DTYQAP-PSSSS---------- 549 (778)
T ss_pred CHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCCc--ccccCC-CCCCC----------
Confidence 99999999999999999999998 468999999886 88888876 3355521 122110 00111
Q ss_pred CccccC-CCccccCC-CCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCcccccc
Q psy9581 631 DNIYNW-PISTYISQ-PPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNS 708 (903)
Q Consensus 631 ~~~~~w-~~styi~~-ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~ 708 (903)
...+.. |.|+++|. .|| + +|.. +++++++||+++..+|||||||.| |.||+++|
T Consensus 550 ~~~v~v~p~s~rlqlLepF-~-----~w~g-kd~edl~ilikv~gkCttDhIsaa---------GpwlkY~G-------- 605 (778)
T KOG0453|consen 550 VVEVDVDPTSDRLQLLEPF-D-----KWDG-KDLEDLKILIKVKGKCTTDHISAA---------GPWLKYRG-------- 605 (778)
T ss_pred cceeecCCcccchhhcCCC-C-----cccc-cccccceEEEEEecccCccccccC---------Ccceeccc--------
Confidence 112233 89999987 455 3 4555 789999999999999999999988 58999854
Q ss_pred ccCCCCChhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchh
Q psy9581 709 YGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRD 788 (903)
Q Consensus 709 yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe 788 (903)
++.|+. .|.|.+..|+.+ .+.....++.+|+..++++.|+.|++.|.+||+|+++|||.|||||
T Consensus 606 --------------hl~nis-nn~~igain~En-~e~n~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsRE 669 (778)
T KOG0453|consen 606 --------------HLENIS-NNDLIGAINKEN-GEANCVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSRE 669 (778)
T ss_pred --------------hhhhcc-cchhhhhcchhh-hhhhhhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchh
Confidence 444442 233332233222 2456677777899999999999999999999999999999999999
Q ss_pred hHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeE
Q psy9581 789 WAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKK 868 (903)
Q Consensus 789 ~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~ 868 (903)
|||..++.+|+++||.+||+|||++|++++|||||+|.++.+|++ ++..+.+++.++. ++.||++++++++..+|+.
T Consensus 670 hAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydK--i~~~d~~~~~~L~-~~~~gkp~t~~vt~~dg~~ 746 (778)
T KOG0453|consen 670 HAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDK--IRPADKVSIKGLT-RRTPGKPLTVVVTKKDGKE 746 (778)
T ss_pred hhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhh--cChhcccchhhhh-hhcCCCceeEEEECCCCcE
Confidence 999999999999999999999999999999999999998888885 7889999999887 7889999999999889988
Q ss_pred EEEEEEEeecCCHHHHHHHHhcCcHHHHHH
Q psy9581 869 IKKIKLLLRIDTPMEIKYYQNDGILPFVLR 898 (903)
Q Consensus 869 ~~~~~~~~~~~t~~e~ei~~aGGll~yv~~ 898 (903)
. ++++.+.. +..|++|+++|..+|++++
T Consensus 747 ~-~~kl~ht~-n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 747 V-EIKLNHTG-NKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred E-EEeccccc-chhhhHhhhcchHHHHHHH
Confidence 8 89998887 8899999999999998765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.1e-128 Score=1067.08 Aligned_cols=400 Identities=64% Similarity=1.125 Sum_probs=387.6
Q ss_pred EEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHh
Q psy9581 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGM 164 (903)
Q Consensus 85 rvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~ 164 (903)
||+|||+||+|+++|||+|||+++++|.||+++||.+|++|++||++|++..+..+++.+|+.++++||.|+|.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred hhcCcccccCCCCcccceeeccccccceecc----cccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceee
Q psy9581 165 QAFNKFNVIPPGFGIVHQINLEYLSRGILNK----DNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYF 240 (903)
Q Consensus 165 ~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~----~g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~ 240 (903)
++|.+++++|||+||||||++|+|+++++.+ .|+++|+++|||||||||+||||+||||||++|++.+|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 9999899999999999999999999999854 479999999999999999999999999999999999999999999
Q ss_pred ecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHH
Q psy9581 241 LIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITV 320 (903)
Q Consensus 241 ~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~ 320 (903)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhcccccc
Q psy9581 321 NYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFK 400 (903)
Q Consensus 321 ~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~ 400 (903)
+++++||||+|||+||+|++|||++||..
T Consensus 237 ------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~--------------- 265 (404)
T cd01586 237 ------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG--------------- 265 (404)
T ss_pred ------------------------------------ceEEEEEcccceeeecCCCCcccccCcCC---------------
Confidence 45689999999999999999999999821
Q ss_pred CCCccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHH
Q psy9581 401 NGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYL 480 (903)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l 480 (903)
+|++||||||||||+||++.||++|+|||+.||+||+||||++|+|||++|+++|
T Consensus 266 -------------------------~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~ 320 (404)
T cd01586 266 -------------------------SVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYL 320 (404)
T ss_pred -------------------------cEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999
Q ss_pred HHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHh
Q psy9581 481 NNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAI 560 (903)
Q Consensus 481 ~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~Al 560 (903)
+++|++++|.++||.|.+||||+|+|+++++.+.+++.+.+||+++++|||+||||+||||+..+++|||||++|||+||
T Consensus 321 ~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi 400 (404)
T cd01586 321 EASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYAL 400 (404)
T ss_pred HHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHh
Confidence 99999999999999999999999999999998888888999998777999999999999999998999999999999999
Q ss_pred hccc
Q psy9581 561 AGNI 564 (903)
Q Consensus 561 aG~I 564 (903)
+|+|
T Consensus 401 ~G~i 404 (404)
T cd01586 401 AGTV 404 (404)
T ss_pred cccC
Confidence 9986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=7.1e-122 Score=1042.54 Aligned_cols=451 Identities=23% Similarity=0.338 Sum_probs=396.3
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
++|.||||.++.++. .+|+.|.++||++|+||.|+++++..|+ ++|. +.++|+ +
T Consensus 3 ~Tl~eKI~~~h~~~~----------------~~g~~v~~~vD~~~~hD~t~~~a~~~~~-------~~g~--~v~~p~-~ 56 (465)
T TIGR00170 3 RTLYEKLFDAHIVYE----------------AEGETPLLYIDRHLIHEVTSPQAFEGLR-------QAGR--KVRRPQ-K 56 (465)
T ss_pred CCHHHHHHHHhcCCC----------------CCCCEEEEEeeeeeecccchHHHHHHHH-------HcCC--CcCCCc-C
Confidence 589999999887652 3689999999999999999999985543 3352 345554 7
Q ss_pred eEEEecccCccCcc--cccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceeccccccc
Q psy9581 123 VDLIVDHSIQVDFF--REKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYY 200 (903)
Q Consensus 123 v~lviDH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~ 200 (903)
+++++||++|++.. +..++..+|+++++++|.++|.| +++++.|||+||||||++|+ |+++
T Consensus 57 ~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~r~~a~~~gi--------~~~~v~~p~~GI~Hqv~~E~---------g~~~ 119 (465)
T TIGR00170 57 TFATMDHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGV--------RLFDLHSVDQGIVHVMGPEQ---------GLTL 119 (465)
T ss_pred EEEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHhCC--------eeeccCCCCCCEeCeEcccc---------Cccc
Confidence 89999999999764 56778899999999999999876 35677899999999999997 7899
Q ss_pred C-CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccce
Q psy9581 201 P-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGK 279 (903)
Q Consensus 201 P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk 279 (903)
| ++||||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||
T Consensus 120 PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~ 199 (465)
T TIGR00170 120 PGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGH 199 (465)
T ss_pred CCceEEecCCCccccccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceE
Confidence 9 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccC--CCcCccccc
Q psy9581 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGI--PKIGEIDYT 357 (903)
Q Consensus 280 ~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~--~d~~a~~Y~ 357 (903)
+|||+|+||++||+++|||||||++|+||++||||+|++|++||+.+++.. ..++|.+++.+|+. +|++|. |+
T Consensus 200 ~vEF~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~----~~~~~~~~~~~~~~l~~d~~a~-Y~ 274 (465)
T TIGR00170 200 VIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAP----KGKEFDKAVAYWKTLKTDEGAV-FD 274 (465)
T ss_pred EEEEEccccccccHHHhhhhhhcchhhCceeeEecCChhHHHHHhcCCccc----chhHHHHHHHhhhhccCCCCCc-ee
Confidence 999999999999999999999999999999999999999999999877643 24678888888866 899999 99
Q ss_pred eEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceecc--CCceeeecCcEEEEEeecc
Q psy9581 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYIT--KNGIKIKNGDILIAAITSC 435 (903)
Q Consensus 358 ~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~V~~a~IgSC 435 (903)
++++||||+|+|+||+|++|+|++||+++.+++....+....... ...+++. ..+.++.+++|++||||||
T Consensus 275 ~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Id~~~IGSC 347 (465)
T TIGR00170 275 TVITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFADPVDKASA-------ERALAYMGLEPGTPLKDIKVDKVFIGSC 347 (465)
T ss_pred EEEEEEcccceeeecCCCChhhccCccccCCChhhhcchhhhhhh-------hhhhhhccccCCcccCCCeEEEEEEecC
Confidence 999999999999999999999999999986655443322110000 0011111 1223577899999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhH
Q psy9581 436 TNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQI 515 (903)
Q Consensus 436 TN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~ 515 (903)
||||++||+.||++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+||||+|+|+++++.+
T Consensus 348 TNgr~~dl~aaA~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~-- 419 (465)
T TIGR00170 348 TNSRIEDLRAAAAVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLP-- 419 (465)
T ss_pred CCCCHHHHHHHHHHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCC--
Confidence 999999999999988 999999999999999999999999999999999999999999999999999987755
Q ss_pred HHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 516 EEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 516 ~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
++| +++||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 420 -----~ge---~~isTsNRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 420 -----EGE---RCASTSNRNFEGRQGR-GGRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred -----CCC---EEEEecCCCCCCCCCC-CCCEEEcCHHHHHHHHhCceec
Confidence 466 4689999999999998 4578999999999999999999
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=8.5e-122 Score=1043.24 Aligned_cols=451 Identities=24% Similarity=0.348 Sum_probs=399.9
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
++|.||||.++.++.+ ++| +|.++|||+|+||.|+|+++.+|++| |. ..+||+..
T Consensus 4 ~Tl~eKI~~~h~~~~~---------------~~g-~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~ 58 (471)
T PRK12466 4 RTLYDKLWDSHTVARL---------------DDG-HVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT 58 (471)
T ss_pred cCHHHHHHHHhcCCCC---------------CCC-EEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe
Confidence 5899999998877643 455 89999999999999999999998754 32 46677654
Q ss_pred eEEEecccCccCccc---ccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccc
Q psy9581 123 VDLIVDHSIQVDFFR---EKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIY 199 (903)
Q Consensus 123 v~lviDH~v~~~~~~---~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~ 199 (903)
++++||++|++++. ..+...+|+.+++++|.++|.| +.+++.+||+||||||++|+ |++
T Consensus 59 -~~~~DH~vp~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi--------~~~~~~~p~~GI~Hqv~~E~---------G~~ 120 (471)
T PRK12466 59 -LAVVDHVVPTRPGRDRGITDPGGALQVDYLRENCADFGI--------RLFDVDDPRQGIVHVVAPEL---------GLT 120 (471)
T ss_pred -EEEeCCCCCCCccccccccCHHHHHHHHHHHHHHHHcCC--------eeeccCCCCCCEEeEEcccc---------Ccc
Confidence 69999999998742 4457788999999999998875 35677889999999999998 789
Q ss_pred cCC-eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccc
Q psy9581 200 YPD-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVG 278 (903)
Q Consensus 200 ~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~g 278 (903)
+|+ ++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++|
T Consensus 121 ~PG~~ivg~DSHT~t~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g 200 (471)
T PRK12466 121 LPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATG 200 (471)
T ss_pred cCCceEEccCCCcCCcChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccc
Confidence 995 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccC--CCcCcccc
Q psy9581 279 KFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGI--PKIGEIDY 356 (903)
Q Consensus 279 k~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~--~d~~a~~Y 356 (903)
|+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.++ .++|.+++..|.. +|++|. |
T Consensus 201 ~~iEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~----~~~~~~~~~~~~~~~~D~~a~-Y 275 (471)
T PRK12466 201 YAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPK----GALWDAALAYWRTLRSDADAV-F 275 (471)
T ss_pred eEEEEECCccccCCHHHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchh----HHHHHHHHhhhhcccCCCCCc-e
Confidence 99999999999999999999999999999999999999999999999998764 2478888888865 899999 9
Q ss_pred ceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccC--CceeeecCcEEEEEeec
Q psy9581 357 TDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK--NGIKIKNGDILIAAITS 434 (903)
Q Consensus 357 ~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~V~~a~IgS 434 (903)
+++++||||+|||+||+|++|+|++||+|+.+++.++++..... .. .+..++++ .+.++.+.+|++|||||
T Consensus 276 ~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~~-~~------~~~~~y~~l~~g~~~~~~~Id~~~IGS 348 (471)
T PRK12466 276 DREVEIDAADIAPQVTWGTSPDQAVPITGRVPDPAAEADPARRA-AM------ERALDYMGLTPGTPLAGIPIDRVFIGS 348 (471)
T ss_pred EEEEEEEcccceEeecCCCChhhceEccccCcChhhhcchhhhh-hh------hhhhhhcccCCCcccCCceEEEEEEec
Confidence 99999999999999999999999999999998887766532111 00 01111211 22357788999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchh
Q psy9581 435 CTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQ 514 (903)
Q Consensus 435 CTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~ 514 (903)
|||||+|||++||++| ||+||+||||++|+|||++|+++|+++||+++|.+|||.|.+||||+|+|+++++++
T Consensus 349 CTNgr~eDl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~- 421 (471)
T PRK12466 349 CTNGRIEDLRAAAAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLA- 421 (471)
T ss_pred cCCCChHHHHHHHHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCC-
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999977654
Q ss_pred HHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 515 IEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 515 ~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
+|| ++|||+||||+||||+ .+.+|||||++||||||+|+|+
T Consensus 422 ------~ge---~~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 422 ------PGE---RCASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred ------CCC---EEEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEeC
Confidence 466 4799999999999998 5678999999999999999999
No 18
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=2.1e-121 Score=1043.20 Aligned_cols=460 Identities=37% Similarity=0.588 Sum_probs=372.2
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCe
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPV 123 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v 123 (903)
+|.||||.++.+... ...+|++|.++|||+|+||+|||+++.+|++|+. ++++|. .+
T Consensus 1 Tl~EKI~~~h~~~~~-------------~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~-~v 57 (465)
T PF00330_consen 1 TLAEKILARHAGREV-------------VARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPD-KV 57 (465)
T ss_dssp -HHHHHHHCCCTHCC-------------HTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTT-SE
T ss_pred ChHHHHHHHHhCCCc-------------cCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCC-Cc
Confidence 688999998877532 1357889999999999999999999999987742 133443 36
Q ss_pred EEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCC-cccceeeccccccceecccccccC-
Q psy9581 124 DLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGF-GIVHQINLEYLSRGILNKDNIYYP- 201 (903)
Q Consensus 124 ~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~-GI~HqV~~E~la~~~~~~~g~~~P- 201 (903)
++++||++|++..+ ..|+..++++|.++|+|++|.+++| ++.+++|+. ||||||++|+ |++.|
T Consensus 58 ~~~~DH~vp~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~-gi~~~~~~~~GI~Hqv~~E~---------g~~~PG 122 (465)
T PF00330_consen 58 VLVIDHSVPADDIG-----SANLQIEDARNRERYRFLRWFAKEF-GIKFFDPGGPGICHQVLPEE---------GLVLPG 122 (465)
T ss_dssp EEE--SS--BSS-H-----HHHHHHHHHHCHHHHHHHHHHHHHC-TTEEEETTSSBSHHHHHHHH---------TT-STT
T ss_pred eEEecCcccccccc-----chhcchhhHHHHHHHHHHHHHHHHc-CCceecCCCCCeeeeeehhh---------ccccce
Confidence 99999999998764 3388999999999999999999988 666666665 9999999998 78899
Q ss_pred CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEE
Q psy9581 202 DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFV 281 (903)
Q Consensus 202 ~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~v 281 (903)
+++||+||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|
T Consensus 123 ~~vvg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~v 202 (465)
T PF00330_consen 123 MTVVGTDSHTCTYGALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAV 202 (465)
T ss_dssp EEEEESSTTGGGGGGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEE
T ss_pred eEEEeCCCCcchhhhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEE
Q psy9581 282 EFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIIT 361 (903)
Q Consensus 282 Ef~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vie 361 (903)
||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.++..++.++|.+.+.|| +|+||. |+++++
T Consensus 203 Ef~G~~v~~Ls~~~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~--~D~dA~-Y~~~i~ 279 (465)
T PF00330_consen 203 EFFGPGVESLSMDDRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK--SDPDAE-YDKVIE 279 (465)
T ss_dssp EEESGGGGGS-HHHHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS----TT----SEEEE
T ss_pred EEEChhhhhcCHhhhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc--CCCccC-eeEEEE
Confidence 99999999999999999999999999999999999999999999999887777778888888888 788999 999999
Q ss_pred EECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceecc--CCceeeecCcEEEEEeeccCCCC
Q psy9581 362 LNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYIT--KNGIKIKNGDILIAAITSCTNTS 439 (903)
Q Consensus 362 iDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~V~~a~IgSCTN~s 439 (903)
||||+|+|+||+|++|||++||+|+.+++.++++...+. .. .+.++++ ++..++.+++|++||||||||||
T Consensus 280 iDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~v~~~-~~------~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~ 352 (465)
T PF00330_consen 280 IDLSELEPQVAGPHSPDNVVPVSEVAPDFASILDPVERE-AA------EKALDYMGLKPGQELEGTKIDQAFIGSCTNGR 352 (465)
T ss_dssp EEGGG-SSEEE-SSSTTSEEEHHHHHHHHHHHH----CC-GC------C-EEEECHTTEEEEEETTBEEEEEEETTTSCT
T ss_pred EEcCccccccccCCCCccccccccccccccccccccccc-cc------ccccccccccccccccceeeeEEEEcCCcCCC
Confidence 999999999999999999999999999988766542111 11 1122332 34468999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHH
Q psy9581 440 NPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEII 519 (903)
Q Consensus 440 ~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i 519 (903)
+|||++||++|+++++ ++|+|+||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|+++ +... +
T Consensus 353 ~~dl~~aA~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~ 424 (465)
T PF00330_consen 353 NEDLRAAAGILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----L 424 (465)
T ss_dssp HHHHHHHHHHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----H
T ss_pred HHHHHHHHHHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----c
Confidence 9999999999977765 699999999999999999999999999999999999999999999999995 2211 2
Q ss_pred hc-CCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhc
Q psy9581 520 IN-NNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAG 562 (903)
Q Consensus 520 ~~-~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 562 (903)
.+ ++ ++|||+||||+||||++.+.+|||||++||||||+|
T Consensus 425 ~~~~~---~~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 425 APLGE---VCVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp CCTTE---EEEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred ccccc---eEEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 23 44 689999999999999999999999999999999998
No 19
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=1.1e-120 Score=1034.22 Aligned_cols=451 Identities=23% Similarity=0.327 Sum_probs=398.9
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
++|.||||.++.++. .+|+.|.++||++|+||.|+++++..|++ +|. +.++|+ +
T Consensus 3 ~tl~eKIl~~h~~~~----------------~~g~~v~~~vD~~~~hD~t~~~a~~~~~~-------~g~--~v~~p~-~ 56 (466)
T PRK05478 3 KTLYDKLWDAHVVHE----------------EEDGPDLLYIDRHLVHEVTSPQAFEGLRL-------AGR--KVRRPD-L 56 (466)
T ss_pred CCHHHHHHHHhcCCC----------------CCCCEEEEEeccceeecccHHHHHHHHHH-------cCC--CccCCC-C
Confidence 589999999887652 26889999999999999999999866543 353 355665 5
Q ss_pred eEEEecccCccCcc--cccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceeccccccc
Q psy9581 123 VDLIVDHSIQVDFF--REKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYY 200 (903)
Q Consensus 123 v~lviDH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~ 200 (903)
+++++||++|++.. ...++..+|+.+++++|.++|.| +++++.+|++|||||+++|+ |+++
T Consensus 57 ~~~~~DH~v~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi--------~~~~~~~~~~GI~Hqv~~E~---------g~~~ 119 (466)
T PRK05478 57 TFATMDHNVPTTDRDLPIADPVSRIQVETLEKNCKEFGI--------TLFDLGDPRQGIVHVVGPEQ---------GLTL 119 (466)
T ss_pred eEEEcCCCCCCCcccccccCHHHHHHHHHHHHHHHHcCC--------eeeccCCCCCCEeCeEcccc---------cccc
Confidence 68899999999976 56777889999999999999877 25666789999999999998 7899
Q ss_pred C-CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccce
Q psy9581 201 P-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGK 279 (903)
Q Consensus 201 P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk 279 (903)
| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++|+
T Consensus 120 PG~~ivGtDSHT~t~GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~ 199 (466)
T PRK05478 120 PGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGY 199 (466)
T ss_pred CCceEEecCCCccccchhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceE
Confidence 9 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccC--CCcCccccc
Q psy9581 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGI--PKIGEIDYT 357 (903)
Q Consensus 280 ~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~--~d~~a~~Y~ 357 (903)
+|||+||||++||+++|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++.+|.. +|++|. |+
T Consensus 200 ~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l~~D~~a~-Y~ 274 (466)
T PRK05478 200 VIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTLKSDEDAV-FD 274 (466)
T ss_pred EEEEECccccccCHHHHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcccCCCCCc-ee
Confidence 999999999999999999999999999999999999999999999654432 46788888888865 789999 99
Q ss_pred eEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceecc--CCceeeecCcEEEEEeecc
Q psy9581 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYIT--KNGIKIKNGDILIAAITSC 435 (903)
Q Consensus 358 ~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~V~~a~IgSC 435 (903)
++++||||+|||+||+|++|+|++||+|+..++.+++++..+. .+. +..+++ +.+.++.+++|++||||||
T Consensus 275 ~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~~~-~~~------~~~~y~~~~~g~~~~~~~id~~~IGSC 347 (466)
T PRK05478 275 KVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVKRA-SAE------RALAYMGLKPGTPITDIKIDKVFIGSC 347 (466)
T ss_pred EEEEEEcccceeeecCCCChhhceEccccCcChhhhcchhhhh-hhh------hhhhhcccccCCccCCCeEEEEEEecC
Confidence 9999999999999999999999999999998888777654211 110 011121 1223578899999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhH
Q psy9581 436 TNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQI 515 (903)
Q Consensus 436 TN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~ 515 (903)
||||+|||++||++| ||+||+||||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++++..
T Consensus 348 TNg~~~dl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l--- 418 (466)
T PRK05478 348 TNSRIEDLRAAAAVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL--- 418 (466)
T ss_pred CCCCcHHHHHHHHHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC---
Confidence 999999999999998 99999999999999999999999999999999999999999999999999985533
Q ss_pred HHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 516 EEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 516 ~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
.+|| ++|||+||||+||||++ ..+|||||++||||||+|+|+
T Consensus 419 ----~~ge---~~vst~NRNF~GR~G~~-~~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 419 ----PPGE---RCASTSNRNFEGRQGKG-GRTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred ----CCCC---EEEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCCCcC
Confidence 3577 47999999999999954 569999999999999999999
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.9e-118 Score=999.35 Aligned_cols=409 Identities=33% Similarity=0.511 Sum_probs=365.8
Q ss_pred EEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHh
Q psy9581 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGM 164 (903)
Q Consensus 85 rvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~ 164 (903)
|||+||+||++++++|++| |. ++.++| .++++||++|++.++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999998754 43 455555 488999999998776544 4667789999999999999
Q ss_pred hhcCcccccCCCCcccceeeccccccceecccccccCC-eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecC
Q psy9581 165 QAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIP 243 (903)
Q Consensus 165 ~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vP 243 (903)
++| |++++|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 9999999999999999998 67785 79999999999999999999999999999999999999999
Q ss_pred ceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHH
Q psy9581 244 DVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYF 323 (903)
Q Consensus 244 evv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL 323 (903)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCC
Q psy9581 324 YNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGF 403 (903)
Q Consensus 324 ~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~ 403 (903)
+.++|+++ .+++++|. .+.+| +|++|. |+++++||||+|||+||+|++|||++||+|+.+.+.+ .++
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~--~D~da~-Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------~g~ 280 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV--ADEGAE-YDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------NGW 280 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC--CCCCCC-eEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc--------cCC
Confidence 99998864 67777785 34455 789999 9999999999999999999999999999999874321 011
Q ss_pred ccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHC
Q psy9581 404 NKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNS 483 (903)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~ 483 (903)
+ .+|++||||||||||+|||+.||. ++|+|+++|+|++ ||++|+|||++|+++|+++
T Consensus 281 -----------------~---~~Id~a~IGSCTNgr~~Dl~~AA~-ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~~~~ 337 (412)
T cd01584 281 -----------------P---LDLRVGLIGSCTNSSYEDMGRAAS-IAKQALAHGLKCK--SIFTITPGSEQIRATIERD 337 (412)
T ss_pred -----------------c---eeEEEEEEeccCCCChHHHHHHHH-HHhhHHhCCCCCC--CcEEEeCCCHHHHHHHHHC
Confidence 1 268999999999999999777775 5588999999998 8999999999999999999
Q ss_pred CchHHHHhcCCEEeccCCccccCCCCC-CchhHHHHHhcCCceEEEEecCCCCCCCCc-CCCCCceEecCHHHHHHHHhh
Q psy9581 484 GLLLYLEKLGFNIVAYGCATCIGNSGK-IKSQIEEIIINNNIITSSILSGNRNFESRI-HPSIYANFLASPPLVIAYAIA 561 (903)
Q Consensus 484 Gll~~l~~aG~~i~~~gCg~CiG~~g~-l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaA~Ala 561 (903)
||+++|.++||.|.+||||+|+|++++ . +.+++.. ++|||+||||+||| |+..+++|||||++||||||+
T Consensus 338 Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~-------~~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~ 409 (412)
T cd01584 338 GLLQTFRDAGGIVLANACGPCIGQWDRKD-------IKKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIA 409 (412)
T ss_pred CcHHHHHHcCCEEcCCcccccccCCCCcc-------cCCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhc
Confidence 999999999999999999999999874 2 2224422 68999999999999 455678999999999999999
Q ss_pred ccc
Q psy9581 562 GNI 564 (903)
Q Consensus 562 G~I 564 (903)
|++
T Consensus 410 G~~ 412 (412)
T cd01584 410 GTL 412 (412)
T ss_pred ccC
Confidence 985
No 21
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=1.8e-116 Score=983.42 Aligned_cols=407 Identities=25% Similarity=0.403 Sum_probs=363.6
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCe
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPV 123 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v 123 (903)
+|.||||.++.++.+ ++|+.|.+++|++|+||.|+++++..|++ +|. ++.++|+ .+
T Consensus 1 Tl~eKIl~~h~~~~v---------------~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-------~g~-~~v~~P~-~v 56 (412)
T TIGR01343 1 TIAEKILSKHSGKEV---------------YAGDLIVAEIDQAMVHDITAPLAIRRLEE-------YGI-DKVFDPE-RI 56 (412)
T ss_pred CHHHHHHHHhcCCcc---------------CCCCEEEEECCEEEEecccHHHHHHHHHH-------cCC-CcCCCCC-cE
Confidence 478999998887633 68899999999999999999999987754 353 3455554 46
Q ss_pred EEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCccc-ccCCCCcccceeeccccccceecccccccC-
Q psy9581 124 DLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFN-VIPPGFGIVHQINLEYLSRGILNKDNIYYP- 201 (903)
Q Consensus 124 ~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~-~~~pg~GI~HqV~~E~la~~~~~~~g~~~P- 201 (903)
.+++||++|+.... ..++++.++++.+ +| ++. ++++|+|||||+++|+ |++.|
T Consensus 57 ~~~~DH~~p~~~~~-----~a~~~~~~r~fa~----------~~-gi~~~~~~g~GI~H~v~~E~---------g~~~PG 111 (412)
T TIGR01343 57 VIVVDHVVPASTIK-----AAEMQKLAREFVK----------KT-GIKHFFDVGEGICHQVLPEE---------GLVKPG 111 (412)
T ss_pred EEEcCCCCCCCChh-----HHHHHHHHHHHHH----------Hc-CCceeecCCCCEEEEEchhh---------CcCCCC
Confidence 89999999987532 3344444444333 33 675 8999999999999998 78888
Q ss_pred CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEE
Q psy9581 202 DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFV 281 (903)
Q Consensus 202 ~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~v 281 (903)
+++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|
T Consensus 112 ~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~v 191 (412)
T TIGR01343 112 DLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAM 191 (412)
T ss_pred cEEEecCCCcCCcCchhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEE
Q psy9581 282 EFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIIT 361 (903)
Q Consensus 282 Ef~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vie 361 (903)
||+|+|+++||+++|||||||++|+||++||||+|++|++||+.++|++ |. .+ .+|+||. |+++++
T Consensus 192 Ef~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~--------~~----~~-~~D~da~-Y~~~i~ 257 (412)
T TIGR01343 192 EFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEP--------FR----VY-KSDEDAE-YAKEVE 257 (412)
T ss_pred EEECCcccccCHHHHhhhhccccccCceeeEecCcHHHHHHHHhhCccc--------cc----cc-CCCCCCC-EEEEEE
Confidence 9999999999999999999999999999999999999999999987652 11 12 3899999 999999
Q ss_pred EECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCch
Q psy9581 362 LNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNP 441 (903)
Q Consensus 362 iDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~ 441 (903)
||||+|||+||+|++|+|++||+++.+ .+|++||||||||||+|
T Consensus 258 iDls~leP~va~P~~Pdnv~~v~~~~g------------------------------------~~id~~~IGSCTngr~~ 301 (412)
T TIGR01343 258 IDASQLEPVVAAPHNVDNVHPVSEVEG------------------------------------IEVDQVFIGSCTNGRIE 301 (412)
T ss_pred EEcccceeeEecCCCCCcEEEhHHhCC------------------------------------CeeeEEEEecCCCCChH
Confidence 999999999999999999999999765 14789999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhc
Q psy9581 442 NLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIIN 521 (903)
Q Consensus 442 dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~ 521 (903)
||++||++| +|+||+|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...+. +
T Consensus 302 Dl~~aA~il------~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l~-------~ 368 (412)
T TIGR01343 302 DLRVAAKIL------KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVLA-------P 368 (412)
T ss_pred HHHHHHHHH------cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------C
Confidence 999999999 899999999999999999999999999999999999999999999999999744332 4
Q ss_pred CCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 522 NNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 522 ~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
|| ++|||+||||+||||++.+.+|||||++||||||+|+|+
T Consensus 369 ge---~~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 369 GE---VCISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred CC---EEEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 66 579999999999999988899999999999999999998
No 22
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=4.4e-116 Score=981.93 Aligned_cols=408 Identities=25% Similarity=0.406 Sum_probs=365.6
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
++|.||||.++.++.+ ++|+.|.+++|++|+||.|+|+++..|++| |. .+.++|+ .
T Consensus 3 ~Tl~eKIl~~h~~~~v---------------~~G~~v~v~vD~~~~hD~t~p~a~~~~~~~-------g~-~~v~~P~-~ 58 (418)
T PRK00402 3 MTLAEKILARHSGRDV---------------SPGDIVEAKVDLVMAHDITGPLAIKEFEKI-------GG-DKVFDPS-K 58 (418)
T ss_pred cCHHHHHHHHhcCCCC---------------CCCCEEEEECCEEEEecccHHHHHHHHHHc-------CC-CccCCCC-c
Confidence 5789999998887643 578999999999999999999999877543 43 2355555 4
Q ss_pred eEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCccc-ccCCCCcccceeeccccccceecccccccC
Q psy9581 123 VDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFN-VIPPGFGIVHQINLEYLSRGILNKDNIYYP 201 (903)
Q Consensus 123 v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~-~~~pg~GI~HqV~~E~la~~~~~~~g~~~P 201 (903)
+.+++||++|+.... ..++++++++|.++ | +++ ++++|+|||||+++|+ |++.|
T Consensus 59 ~~~~~DH~~p~~~~~-----~a~~~~~~r~fa~~----------~-gi~~~~~~g~GI~H~v~~E~---------g~~~P 113 (418)
T PRK00402 59 IVIVFDHFVPAKDIK-----SAEQQKILREFAKE----------Q-GIPNFFDVGEGICHQVLPEK---------GLVRP 113 (418)
T ss_pred EEEECCCCCCCCChh-----hHHHHHHHHHHHHH----------c-CCcceeCCCCCEeeEehhhc---------CccCC
Confidence 689999999987532 33555555554443 2 675 7999999999999998 68888
Q ss_pred -CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceE
Q psy9581 202 -DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKF 280 (903)
Q Consensus 202 -~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~ 280 (903)
+++|||||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+
T Consensus 114 G~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~ 193 (418)
T PRK00402 114 GDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKA 193 (418)
T ss_pred CcEEEeCCCCccccCccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEE
Q psy9581 281 VEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDII 360 (903)
Q Consensus 281 vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vi 360 (903)
|||+|+|+++||+++|||||||++|+||++||||+|++|++||+.+++.. | .|..+|++|. |++++
T Consensus 194 vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~--------~-----~~l~~D~~a~-Y~~~i 259 (418)
T PRK00402 194 LEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD--------Y-----KPWKSDEDAE-YEEVY 259 (418)
T ss_pred EEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHHhhcccc--------c-----ccccCCCCCC-EEEEE
Confidence 99999999999999999999999999999999999999999999875432 1 2445899999 99999
Q ss_pred EEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCc
Q psy9581 361 TLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSN 440 (903)
Q Consensus 361 eiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~ 440 (903)
+||||+|||+||+|++|||++||+++.+ .+|++||||||||||+
T Consensus 260 ~iDls~leP~va~P~~Pdnv~~v~~~~g------------------------------------~~id~~~IGSCTngr~ 303 (418)
T PRK00402 260 EIDLSKLEPQVAAPHLPDNVKPVSEVEG------------------------------------TKVDQVFIGSCTNGRL 303 (418)
T ss_pred EEEcccceeeeecCCCccceeEchhhCC------------------------------------ceeeEEEEecCCCCCh
Confidence 9999999999999999999999999765 1478999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHh
Q psy9581 441 PNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIII 520 (903)
Q Consensus 441 ~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~ 520 (903)
|||++||++| ||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...+.
T Consensus 304 eDl~~aA~il------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~------- 370 (418)
T PRK00402 304 EDLRIAAEIL------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA------- 370 (418)
T ss_pred HHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------
Confidence 9999999999 999999999999999999999999999999999999999999999999998744332
Q ss_pred cCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 521 NNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 521 ~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
+|| ++|||+||||+||||++.+.+|||||++||||||+|+|+
T Consensus 371 ~ge---~~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 371 PGE---VCLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred CCC---EEEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 466 579999999999999988899999999999999999999
No 23
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=3.7e-116 Score=975.25 Aligned_cols=380 Identities=26% Similarity=0.415 Sum_probs=346.7
Q ss_pred EEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHh
Q psy9581 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGM 164 (903)
Q Consensus 85 rvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~ 164 (903)
|+|+||.|+|+++..| |+...+.+.||++ +++++||++|++ +...+|+++++++|.++|.
T Consensus 1 ~~~~hD~t~p~a~~~~---~~~g~~~v~dp~k------~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFEGL---REAGREKVWDPEK------IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHHHH---HHhCCcccCCCCc------eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhC------
Confidence 5899999999998554 4433334555655 489999999987 4567899999999888653
Q ss_pred hhcCcccccCC-CCcccceeeccccccceecccccccC-CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeec
Q psy9581 165 QAFNKFNVIPP-GFGIVHQINLEYLSRGILNKDNIYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLI 242 (903)
Q Consensus 165 ~~f~~~~~~~p-g~GI~HqV~~E~la~~~~~~~g~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~v 242 (903)
++++++ |+||||||++|+ |++.| +++|||||||||+||||+||||||++|++.+|+||++||++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E~---------g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPEK---------GLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEeccc---------cEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 445677 999999999998 67788 78999999999999999999999999999999999999999
Q ss_pred CceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHH
Q psy9581 243 PDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNY 322 (903)
Q Consensus 243 Pevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~Y 322 (903)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCC
Q psy9581 323 FYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNG 402 (903)
Q Consensus 323 L~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~ 402 (903)
|+.++|+. |. .+ .+|++|. |+++++||||+|||+||+|++|||++||+|+.+
T Consensus 207 L~~~~~~~--------~~----~~-~~D~~a~-Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~-------------- 258 (382)
T cd01583 207 LKGRGKAY--------WK----EL-KSDEDAE-YDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG-------------- 258 (382)
T ss_pred HHhcCccc--------hh----hc-CCCCCCC-EEEEEEEEcccceeeEecCCCccceEECcccCC--------------
Confidence 99998762 11 12 2899999 999999999999999999999999999999765
Q ss_pred CccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHH
Q psy9581 403 FNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNN 482 (903)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~ 482 (903)
.+||+||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|++
T Consensus 259 ----------------------~~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~~~~ 310 (382)
T cd01583 259 ----------------------IKIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEK 310 (382)
T ss_pred ----------------------cceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHHHHH
Confidence 14789999999999999999999999 99999999999999999999999999
Q ss_pred CCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhc
Q psy9581 483 SGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAG 562 (903)
Q Consensus 483 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 562 (903)
+||+++|.++||.|.+||||+|+|+++++. .+|| ++|||+||||+||||++.+++|||||++||||||+|
T Consensus 311 ~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G 380 (382)
T cd01583 311 EGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGE---RCVSTSNRNFKGRMGSPGARIYLASPATAAASAITG 380 (382)
T ss_pred CCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCC---EEEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhcc
Confidence 999999999999999999999999987653 3577 579999999999999988899999999999999999
Q ss_pred cc
Q psy9581 563 NI 564 (903)
Q Consensus 563 ~I 564 (903)
+|
T Consensus 381 ~i 382 (382)
T cd01583 381 EI 382 (382)
T ss_pred cC
Confidence 86
No 24
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=3.6e-116 Score=981.05 Aligned_cols=406 Identities=26% Similarity=0.391 Sum_probs=365.9
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCe
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPV 123 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v 123 (903)
+|.||||.++.++++ .+|+.|.+++|++|+||.|+|+++..|++ +| .+.++|+ .+
T Consensus 2 Tl~eKIl~~h~~~~v---------------~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-------~g--~~v~~p~-~~ 56 (412)
T TIGR02086 2 TLAEKILSEKVGRPV---------------EAGEIVEVEVDLAMAHDGTGPLAIETLRE-------LG--ARVEDPE-KI 56 (412)
T ss_pred CHHHHHHHHhcCCcc---------------CCCCEEEEECCEEEEecccHHHHHHHHHH-------cC--CcccCCC-CE
Confidence 689999998877643 68899999999999999999999987754 34 4566665 36
Q ss_pred EEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccC-C
Q psy9581 124 DLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP-D 202 (903)
Q Consensus 124 ~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P-~ 202 (903)
.+++||++|+.... ..|.++..++|.+ +| ++++++||+|||||+++|+ |++.| +
T Consensus 57 ~~~~DH~~p~~~~~-----~a~~~~~~r~fa~----------~~-gi~~~~~g~GI~H~v~~E~---------G~~~PG~ 111 (412)
T TIGR02086 57 VIFFDHVVPPPTVE-----AANRQKEIREFAK----------EH-GIPVFDVGEGICHQVLVEE---------GYAGPGM 111 (412)
T ss_pred EEECCCCCCCCCHH-----HHHHHHHHHHHHH----------Hc-CCcEECCCCCeEeEEhhhc---------CccCCCc
Confidence 89999999987542 3344444444333 22 7888999999999999998 78888 6
Q ss_pred eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEE
Q psy9581 203 IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVE 282 (903)
Q Consensus 203 ~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vE 282 (903)
++||+||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+||
T Consensus 112 ~iig~DSHT~t~GalGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vE 191 (412)
T TIGR02086 112 VVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIE 191 (412)
T ss_pred EEEecCCCccccchhhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEE
Q psy9581 283 FFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITL 362 (903)
Q Consensus 283 f~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~viei 362 (903)
|+|+|+++||+++|||||||++|+||++||||+|++|++||+.++|.+ |. .+ .+|++|. |+++++|
T Consensus 192 f~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~--------~~----~~-~~D~~a~-Y~~~i~i 257 (412)
T TIGR02086 192 FFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYE--------FR----IL-RPDPGAK-YDDEIEI 257 (412)
T ss_pred EECccccccCHHHHhhhhhcccccCceeeEecCCHHHHHHHHhcCCcc--------cc----cc-cCCCCCC-EEEEEEE
Confidence 999999999999999999999999999999999999999999998753 11 12 3899999 9999999
Q ss_pred ECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCchH
Q psy9581 363 NLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPN 442 (903)
Q Consensus 363 DLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~d 442 (903)
|||+|||+||+|++|+|++|++++.+ .+||+||||||||||+||
T Consensus 258 Dls~leP~va~P~~P~nv~~v~~~~~------------------------------------~~id~~~IGSCTngr~~D 301 (412)
T TIGR02086 258 DLSDLEPLVAVPHSVDNVRPVSDVEG------------------------------------TEIDQVFIGSCTNGRIED 301 (412)
T ss_pred EccceeEEecCCCChHhcccchhhcc------------------------------------cceeEEEEeccCCCChHH
Confidence 99999999999999999999999765 147899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcC
Q psy9581 443 LMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINN 522 (903)
Q Consensus 443 l~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~ 522 (903)
|++||++| ||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++..++ .+|
T Consensus 302 l~~aA~vL------kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~g 368 (412)
T TIGR02086 302 LRIAAEIL------EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDG 368 (412)
T ss_pred HHHHHHHH------cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCC
Confidence 99999999 99999999999999999999999999999999999999999999999999985433 346
Q ss_pred CceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 523 NIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 523 e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
| ++|||+||||+||||++.+++|||||++||||||+|+|+
T Consensus 369 e---~~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 369 E---VCVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred C---EEEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 7 579999999999999988899999999999999999999
No 25
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-115 Score=948.73 Aligned_cols=410 Identities=27% Similarity=0.422 Sum_probs=367.0
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
++|.||||..+.+..- ..+|+.+.+++|++|+||.|+|+|+..|. ++|. +.++|+ +
T Consensus 3 ~Tl~eKI~~~h~~~~~--------------~~~G~~~~~~iD~~l~HdvTsP~a~~~lr-------~~g~--kV~~p~-k 58 (423)
T COG0065 3 KTLYEKILDAHVGKEE--------------VGAGETVLLYIDLHLVHDVTSPQAFEGLR-------EAGR--KVRDPE-K 58 (423)
T ss_pred ccHHHHHHHHhccccc--------------CCCCCcEEEEeeeeeeeccccHHHHHHHH-------HhCC--cccCcc-c
Confidence 7899999999887641 36788899999999999999999986543 3344 344554 4
Q ss_pred eEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCc-ccccCCC-Ccccceeeccccccceeccccccc
Q psy9581 123 VDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNK-FNVIPPG-FGIVHQINLEYLSRGILNKDNIYY 200 (903)
Q Consensus 123 v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~-~~~~~pg-~GI~HqV~~E~la~~~~~~~g~~~ 200 (903)
+.+++||++|+++.. ..++++++++|.+.+ + ..+++.| +||||||.+|+ |++.
T Consensus 59 ~~~~~DH~vPt~~~~-----~a~~~~~lr~~~ke~-----------Gi~~~~~~g~~GI~H~v~pE~---------G~~~ 113 (423)
T COG0065 59 TVATFDHNVPTPDIK-----AAEQQKELRENAKEF-----------GIVNFYDVGDQGIVHQVGPEQ---------GLTL 113 (423)
T ss_pred eEEEecCCCCCccHH-----HHHHHHHHHHHHHHh-----------CCeeeecCCCCcEEEEEeccc---------cccC
Confidence 689999999988654 347788888887743 4 4457788 99999999998 8999
Q ss_pred C-CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccce
Q psy9581 201 P-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGK 279 (903)
Q Consensus 201 P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk 279 (903)
| ++|||+||||||+||||+||+|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+
T Consensus 114 PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~ 193 (423)
T COG0065 114 PGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGY 193 (423)
T ss_pred CCcEEEecccCcccchhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceE
Confidence 9 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhccccc--CCCcCccccc
Q psy9581 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFG--IPKIGEIDYT 357 (903)
Q Consensus 280 ~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~--~~d~~a~~Y~ 357 (903)
++||+|+.+++|||++|||||||++|+||++|+|+||++|++||+... ++...|. .+|+||. |+
T Consensus 194 aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a~~~~~~l~sD~dA~-y~ 259 (423)
T COG0065 194 AIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GAVAYWKTLKSDEDAV-YD 259 (423)
T ss_pred EEEEeccchhhCChhhhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------ccccccceecCCCCCc-ee
Confidence 999999999999999999999999999999999999999999999321 1112232 2899999 99
Q ss_pred eEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCC
Q psy9581 358 DIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTN 437 (903)
Q Consensus 358 ~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN 437 (903)
++++||+|+|+|+||||++|+|++|++++.++ + .+||++|||||||
T Consensus 260 ~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~----------------------~------------i~iDqVFIGSCTN 305 (423)
T COG0065 260 KVVELDASDLEPQVAWPTNPDNVVPVSEVEPD----------------------P------------IKIDQVFIGSCTN 305 (423)
T ss_pred EEEEEEcccCCceeeCCCCcccceecccccCC----------------------c------------eeeceEEEeccCC
Confidence 99999999999999999999999999998762 1 2588999999999
Q ss_pred CCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHH
Q psy9581 438 TSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEE 517 (903)
Q Consensus 438 ~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~ 517 (903)
||++||++||++| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..||||||+|+|.+.+
T Consensus 306 gRieDLr~AA~Il------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL----- 374 (423)
T COG0065 306 GRIEDLRAAAEIL------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVL----- 374 (423)
T ss_pred ccHHHHHHHHHHh------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcC-----
Confidence 9999999999999 89999999999999999999999999999999999999999999999999985543
Q ss_pred HHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 518 IIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 518 ~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
.+|| +|+||+||||+||||++.+.+||+||+++||+||+|+|+
T Consensus 375 --~~gE---~c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 375 --GPGE---RCASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred --CCCC---EEeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 3577 479999999999999888899999999999999999999
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=4.4e-115 Score=971.63 Aligned_cols=410 Identities=28% Similarity=0.402 Sum_probs=363.5
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCe
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPV 123 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v 123 (903)
+|.||||+++.++. ...+|++|.+++|++|+||.|+|+++..|++ +|. ++.+||+ ++
T Consensus 2 Tl~eKIl~~h~~~~--------------~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~~-------~g~-~~V~dp~-~v 58 (419)
T TIGR02083 2 TMAEKILAQHAGLE--------------SVEPGELILAKLDIVLGNDITTPLAIKAFKE-------YGG-KKVFDPD-RV 58 (419)
T ss_pred CHHHHHHHHhcCCC--------------CCCCCCEEEEECcEEEEEeccHHHHHHHHHH-------cCC-CcCCCCC-CE
Confidence 68999999988753 1378999999999999999999999987643 343 3455665 46
Q ss_pred EEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCccc-ccCCCC-cccceeeccccccceecccccccC
Q psy9581 124 DLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFN-VIPPGF-GIVHQINLEYLSRGILNKDNIYYP 201 (903)
Q Consensus 124 ~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~-~~~pg~-GI~HqV~~E~la~~~~~~~g~~~P 201 (903)
.+++||++|+.+. ...|++++++++.++ .+++ |+++|+ |||||+++|+ |++.|
T Consensus 59 ~~~~DH~vpa~~~-----~~a~~~~~~r~fa~~-----------~gi~~f~d~g~~GI~H~v~~E~---------g~~~P 113 (419)
T TIGR02083 59 ALVPDHFTPNKDI-----KSAEQCKMMREFARE-----------QGIEKFFEIGNMGIEHALLPEE---------GIVKP 113 (419)
T ss_pred EEEeCCCCCCCCH-----HHHHHHHHHHHHHHH-----------cCCcceecCCCcceeeeecccc---------CccCC
Confidence 8999999998742 344555555554443 2675 688885 9999999997 78899
Q ss_pred -CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceE
Q psy9581 202 -DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKF 280 (903)
Q Consensus 202 -~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~ 280 (903)
+++||+||||||+||||+||||||++|++.+|+||++||+|||+|+|+|+|+|++||++|||||+|++.|+.+|++||+
T Consensus 114 G~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~ 193 (419)
T TIGR02083 114 GDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKS 193 (419)
T ss_pred CeEEEecCCCccccCccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEE
Q psy9581 281 VEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDII 360 (903)
Q Consensus 281 vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vi 360 (903)
|||+|+|+++||+++|||||||++|+||++||||+|++|++||+.+++++ |. .+ .+|+||. |++++
T Consensus 194 iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--------~~----~~-~~D~dA~-Y~~~~ 259 (419)
T TIGR02083 194 MEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--------EK----IY-KADEDAK-YVRVI 259 (419)
T ss_pred EEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--------hh----cc-cCCCCCC-EEEEE
Confidence 99999999999999999999999999999999999999999999765432 11 12 3899999 99999
Q ss_pred EEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCc
Q psy9581 361 TLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSN 440 (903)
Q Consensus 361 eiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~ 440 (903)
+||||+|||+||+|++|+|++||+++.. ...+|++||||||||||+
T Consensus 260 ~iDls~leP~va~P~~pdnv~~v~e~~~----------------------------------~g~~id~v~IGSCTngr~ 305 (419)
T TIGR02083 260 EIDLSELEPQVAFPHLPENTKDISEAGK----------------------------------EEIKIDQVVIGSCTNGRL 305 (419)
T ss_pred EEEccccceeecCCCCcccCcChhhccc----------------------------------ccCccCeEEEEcCCCCCh
Confidence 9999999999999999999999999762 012578999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHh
Q psy9581 441 PNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIII 520 (903)
Q Consensus 441 ~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~ 520 (903)
+||++||++| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...+ .
T Consensus 306 eDl~~AA~iL------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l-------~ 372 (419)
T TIGR02083 306 EDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGIL-------A 372 (419)
T ss_pred HHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcC-------C
Confidence 9999999999 99999999999999999999999999999999999999999999999999884333 2
Q ss_pred cCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 521 NNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 521 ~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
+|| ++|||+||||+||||++.+.+|||||++||||||+|+|+
T Consensus 373 ~ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 373 EGE---RAISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred CCC---EEEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 466 589999999999999877899999999999999999999
No 27
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=6.4e-115 Score=962.61 Aligned_cols=379 Identities=32% Similarity=0.511 Sum_probs=348.3
Q ss_pred eEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHH
Q psy9581 84 TRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWG 163 (903)
Q Consensus 84 drvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~ 163 (903)
|++|+||.|+|+++..|+ ++|.+ +.++| .+++++||++|+.. .+|.++|+|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~--~~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTE--LSVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCC--CeEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999998764 34653 34555 37899999999853 2567889999999
Q ss_pred hhhcCcccccCCCCcccceeeccccccceecccccccC-CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeec
Q psy9581 164 MQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLI 242 (903)
Q Consensus 164 ~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~v 242 (903)
+++| ++++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++.+|+||++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 9998 8999999999999999998 4556 79999999999999999999999999999999999999999
Q ss_pred CceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHH
Q psy9581 243 PDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNY 322 (903)
Q Consensus 243 Pevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~Y 322 (903)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCC
Q psy9581 323 FYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNG 402 (903)
Q Consensus 323 L~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~ 402 (903)
|+.+||.+++. .+ .+|++|. |+++++||||+|||+||+|++|+|++||+++.+
T Consensus 205 l~~~gr~~~~~----------~l--~~D~~a~-Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g-------------- 257 (380)
T cd01585 205 LAAQGREDDWV----------EL--AADADAE-YDEEIEIDLSELEPLIARPHSPDNVVPVREVAG-------------- 257 (380)
T ss_pred HHhcCCchhcc----------cc--CCCCCCc-eEEEEEEEcccceeeecCCCCCCceeEhhhhCC--------------
Confidence 99998864321 12 2899999 999999999999999999999999999999765
Q ss_pred CccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHH
Q psy9581 403 FNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNN 482 (903)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~ 482 (903)
.+|++||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|++
T Consensus 258 ----------------------~~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~a~~ 309 (380)
T cd01585 258 ----------------------IKVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLAR 309 (380)
T ss_pred ----------------------ceEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHHHHH
Confidence 15889999999999999999999999 99999999999999999999999999
Q ss_pred CCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhc
Q psy9581 483 SGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAG 562 (903)
Q Consensus 483 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 562 (903)
+||+++|+++||.|.+||||+|+|+++.+. +|| ++|||+||||+||||++.+++|||||++||||||+|
T Consensus 310 ~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~--------~ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsAi~G 378 (380)
T cd01585 310 NGALADLLAAGARILESACGPCIGMGQAPP--------TGG---VSVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTG 378 (380)
T ss_pred CCcHHHHHHcCCEEeCCCceeccCCCCCCC--------CCc---EEEEccCCCCCccCCCCCCcEEeCCHHHHHHHHhCc
Confidence 999999999999999999999999976532 466 589999999999999988899999999999999999
Q ss_pred cc
Q psy9581 563 NI 564 (903)
Q Consensus 563 ~I 564 (903)
+|
T Consensus 379 ~i 380 (380)
T cd01585 379 VI 380 (380)
T ss_pred cC
Confidence 87
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.1e-107 Score=915.78 Aligned_cols=406 Identities=22% Similarity=0.285 Sum_probs=350.9
Q ss_pred HHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeE
Q psy9581 45 ILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVD 124 (903)
Q Consensus 45 l~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~ 124 (903)
|+||||+++.|+. .+++|++|.+++|++|+||.|||+++..|++| |. +.+||+ ++.
T Consensus 1 ~~EKIl~~~~~~~--------------~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~~-------~~--~v~d~~-~~v 56 (436)
T cd01581 1 LAQKIVGRACGVK--------------GVRPGTYCEPKMTTVGSQDTTGPMTRDELKEL-------AC--LGFSAD-LVM 56 (436)
T ss_pred ChHHHHHHhcCCC--------------CCCCCCEEEEEcCEEEeeccchHHHHHHHHHc-------CC--cccCCc-cEE
Confidence 4799999888753 13789999999999999999999999887654 33 345554 468
Q ss_pred EEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCC-e
Q psy9581 125 LIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD-I 203 (903)
Q Consensus 125 lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~-~ 203 (903)
+++||++|+.+.. ..|.++.++++ +. ++ ++.|+++|+|||||+++|+ ++|+ +
T Consensus 57 ~~~DH~~p~~~~~-----~a~~~~~~r~f---------a~-~~-gi~~~~~g~GI~Hqv~~e~-----------~~PG~~ 109 (436)
T cd01581 57 QSFCHTAAYPKPV-----DVKTHRTLPDF---------IS-NR-GGVALRPGDGVIHSWLNRM-----------LLPDTV 109 (436)
T ss_pred EEcCCCCCCCCHH-----HHHHHHHHHHH---------HH-Hc-CCcEECCCCCeeeeeehhh-----------ccCCce
Confidence 9999999987542 33444444432 22 22 6788999999999998884 5775 6
Q ss_pred EEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHH----HHH--------h
Q psy9581 204 IVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTI----TKL--------L 271 (903)
Q Consensus 204 vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i----~~~--------L 271 (903)
+|||||||||+|| ||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+| ++. +
T Consensus 110 ivGtDSHT~t~ga---~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~ 186 (436)
T cd01581 110 GTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKG 186 (436)
T ss_pred EEeeccccCCCCc---eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccC
Confidence 7999999999987 799999999999999999999999999999999999999999999985 444 4
Q ss_pred hhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHH-HHHHhcc----------CCCh-----hhHHH
Q psy9581 272 RKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKIT-VNYFYNT----------GRNN-----LEIKA 335 (903)
Q Consensus 272 ~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t-~~YL~~~----------gR~~-----~~~~~ 335 (903)
+.+|++||+|||. |+++||+++|||||||++|+|||+|+||+|++| ++||+.+ ||++ +..+.
T Consensus 187 g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~ 264 (436)
T cd01581 187 KKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIA 264 (436)
T ss_pred CcccccceEEEEC--CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHH
Confidence 5556799999996 599999999999999999999999999999988 8999986 5532 34556
Q ss_pred HHHHHHhcccccCCCcCccccceEEEEECCCc-ccccccCCCCCCeeeccccchhhHHhhccccccCCCcccccccccee
Q psy9581 336 FESYFKSQKLFGIPKIGEIDYTDIITLNLDNV-SPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIY 414 (903)
Q Consensus 336 ~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~v-eP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (903)
+++|.+.+.+|. +|++|. |+++++||||+| ||+||+|++|||++|++++.+
T Consensus 265 ~~~~~~~~~~~~-~D~da~-Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g-------------------------- 316 (436)
T cd01581 265 MEEWLANPPLLE-PDADAE-YAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG-------------------------- 316 (436)
T ss_pred HHHHHhhccccc-CCCCCc-eEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC--------------------------
Confidence 778887777776 899999 999999999999 999999999999999999765
Q ss_pred ccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCC
Q psy9581 415 ITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGF 494 (903)
Q Consensus 415 ~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~ 494 (903)
.+|+++||||||| |++|++.||++| ||+|+ +.||++|+|||++|+++|+++|++++|.++||
T Consensus 317 ----------~~id~~~IGSCTn-r~eDl~~AA~il------kg~~~-~~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa 378 (436)
T cd01581 317 ----------KKIDEVFIGSCMT-NIGHFRAAAKIL------RGKEF-KPTRLWVAPPTRMDWAILQEEGYYSIFGDAGA 378 (436)
T ss_pred ----------CccceEEEecCCC-CHHHHHHHHHHH------cCCCC-CCCCEEEECCCHHHHHHHHHcChHHHHHHcCC
Confidence 1467899999999 999999999999 99997 45999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhccc
Q psy9581 495 NIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNI 564 (903)
Q Consensus 495 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 564 (903)
.|.+||||+|+|+.+. +.+|| ++|||+||||+||||+ .+++|||||++||||||+|+|
T Consensus 379 ~v~~pgCg~C~G~~~~--------~~~ge---v~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 379 RTEMPGCSLCMGNQAR--------VADGA---TVFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred EECCCccccccCcCCc--------CCCCC---EEEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 9999999999998654 34577 4799999999999999 678999999999999999987
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.9e-105 Score=880.52 Aligned_cols=361 Identities=30% Similarity=0.453 Sum_probs=316.7
Q ss_pred EEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHh
Q psy9581 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGM 164 (903)
Q Consensus 85 rvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~ 164 (903)
.+|+||.|+|+++. |.+ +|. ++.++|+ ++.+++||++|+.... ..++.+.++ ..+
T Consensus 1 ~~~~hd~t~p~~~~-~~~-------~g~-~~v~~p~-~~~~~~DH~vp~~~~~-----~~~~~~~lr----------~~a 55 (363)
T cd01582 1 HCMTHDNSWPVALK-FMS-------IGA-TKIHNPD-QIVMTLDHDVQNKSEK-----NLKKYKNIE----------SFA 55 (363)
T ss_pred CeeEEeCcHHHHHH-HHH-------cCC-CccCCCC-CEEEEcCCCCCCCCHH-----HHHHHHHHH----------HHH
Confidence 37999999999876 532 354 4566665 4688899999987432 123333333 333
Q ss_pred hhcCcccccCCCCcccceeeccccccceecccccccCC-eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecC
Q psy9581 165 QAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIP 243 (903)
Q Consensus 165 ~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vP 243 (903)
++| +++++|+|+|||||+++|+ |+++|+ ++|||||||||+||||+||||||++|++.+|++|++|+++|
T Consensus 56 k~~-gi~~~~~g~GI~Hqv~~E~---------g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 56 KKH-GIDFYPAGRGIGHQIMIEE---------GYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred HHh-CCeEECCCCCEEEEecccc---------CccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 344 8889999999999999997 789995 67999999999999999999999999999999999999999
Q ss_pred ceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHH
Q psy9581 244 DVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYF 323 (903)
Q Consensus 244 evv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL 323 (903)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCC
Q psy9581 324 YNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGF 403 (903)
Q Consensus 324 ~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~ 403 (903)
+++++||||+|||+||+|++|+|+.|++++...
T Consensus 199 ---------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~-------------- 231 (363)
T cd01582 199 ---------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ-------------- 231 (363)
T ss_pred ---------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc--------------
Confidence 345799999999999999999999999997430
Q ss_pred ccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCC-CccCCceeEEEecCCHHHHHHHHH
Q psy9581 404 NKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFG-LEISPKIKTSFTPGSRVVTEYLNN 482 (903)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G-~kv~~~Vk~~v~PgS~~V~~~l~~ 482 (903)
..+|++||||||||||++||++||++|+.+..++| ++|+||||++|+|||++|+++|++
T Consensus 232 --------------------~~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~a~~ 291 (363)
T cd01582 232 --------------------NIKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEK 291 (363)
T ss_pred --------------------CceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHHHHH
Confidence 12578999999999999999999999933222222 239999999999999999999999
Q ss_pred CCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhc
Q psy9581 483 SGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAG 562 (903)
Q Consensus 483 ~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 562 (903)
+||+++|.++||.|.+|||++|+|+++++.+ +|| ++|||+||||+||||++.+++|||||++||||||+|
T Consensus 292 ~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge---~~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G 361 (363)
T cd01582 292 NGDWQTLLEAGATPLPAGCGPCIGLGQGLLE-------PGE---VGISATNRNFKGRMGSTEALAYLASPAVVAASAISG 361 (363)
T ss_pred cCcHHHHHHCCCEEECCCCeeccCCCCCCCC-------CCC---EEEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCc
Confidence 9999999999999999999999999977654 466 469999999999999988999999999999999999
Q ss_pred cc
Q psy9581 563 NI 564 (903)
Q Consensus 563 ~I 564 (903)
+|
T Consensus 362 ~i 363 (363)
T cd01582 362 KI 363 (363)
T ss_pred cC
Confidence 86
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=2.6e-101 Score=863.17 Aligned_cols=388 Identities=37% Similarity=0.622 Sum_probs=352.3
Q ss_pred EEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHh
Q psy9581 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGM 164 (903)
Q Consensus 85 rvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~ 164 (903)
|||+||.|||+++.+|++| +.+.+.++| .++++++||++|+.+ .+|.++++||+|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p-~~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADP-SQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCc-ccEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 6899999999999988654 332134444 478999999999853 25677788999988
Q ss_pred hhcCcccccCCCCcccceeeccccccceecccccccC-CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecC
Q psy9581 165 QAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIP 243 (903)
Q Consensus 165 ~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vP 243 (903)
++| +++++++|+|||||+++|++ +.| ++++|+||||||+||||+||||+|++|++++|+||++|+++|
T Consensus 58 ~~~-gi~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQ-GIAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHc-CCcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 888 68999999999999999983 445 799999999999999999999999999999999999999999
Q ss_pred ceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHH
Q psy9581 244 DVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYF 323 (903)
Q Consensus 244 evv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL 323 (903)
++++|+|+|+|++||++||++|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCC
Q psy9581 324 YNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGF 403 (903)
Q Consensus 324 ~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~ 403 (903)
+.++|++... .++.|.+. | .+|++|. |+++++||||+|+|+||+|++|||++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~--l--~~d~~a~-y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~--------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE--L--LADEGAE-YDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc--c--CCCCCCC-eeEEEEEEhhhceeEEecCCChhhccChhhccC---------------
Confidence 9999986544 33334332 2 3899999 999999999999999999999999999999754
Q ss_pred ccccccccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHC
Q psy9581 404 NKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNS 483 (903)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~ 483 (903)
.+||++|||||||+|++|++.||++| ||+||+|+||++|+|||++|+++++++
T Consensus 266 ---------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a~~~ 318 (389)
T cd01351 266 ---------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSRE 318 (389)
T ss_pred ---------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHHHHc
Confidence 25889999999999999999999999 999999999999999999999999999
Q ss_pred CchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcc
Q psy9581 484 GLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGN 563 (903)
Q Consensus 484 Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~ 563 (903)
||+++|+++||.|..+||++|+|++++++. +|+ ++|||+||||+||||+..+++|||||++||||||+|+
T Consensus 319 Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~-------~g~---~~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl~G~ 388 (389)
T cd01351 319 GYYEILVDSGARILPPGCGPCMGNGARLVA-------DGE---VGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388 (389)
T ss_pred ChHHHHHHCCCEEeCCCCcccCCCCCCcCC-------CCc---EEEEeecCCCccccCCCCCceEECCHHHHHHHHhcCc
Confidence 999999999999999999999999977644 466 5799999999999999888999999999999999998
Q ss_pred c
Q psy9581 564 I 564 (903)
Q Consensus 564 I 564 (903)
|
T Consensus 389 i 389 (389)
T cd01351 389 I 389 (389)
T ss_pred C
Confidence 6
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.2e-98 Score=884.52 Aligned_cols=410 Identities=21% Similarity=0.260 Sum_probs=355.2
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
.+|+||||.++.|.. ..++|++|.+++|.|++||.|||+++..|.. +|. ..++|+ .
T Consensus 371 ~TlaeKIl~~a~G~~--------------~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~-------lg~--~~~~~d-~ 426 (835)
T PRK09238 371 FTLAQKMVGRACGVP--------------GVRPGTYCEPKMTTVGSQDTTGPMTRDELKD-------LAC--LGFSAD-L 426 (835)
T ss_pred ccHHHHHHHHhcCCC--------------CCCCCCEEEEECCEEEeeccchHHHHHHHHH-------cCC--cccCCC-c
Confidence 488999999888863 2478999999999999999999999877644 443 344444 3
Q ss_pred eEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCC
Q psy9581 123 VDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD 202 (903)
Q Consensus 123 v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~ 202 (903)
+.+++||.+|..... ..++++.++++ +. + .++.+++||+||||||+.+ +++|+
T Consensus 427 v~~~~dH~~p~~~~~-----~a~~~~~lr~F---------a~-~-~Gi~~~~pG~GI~H~vl~~-----------~~~Pg 479 (835)
T PRK09238 427 VMQSFCHTAAYPKPV-----DVKTHHTLPDF---------IM-N-RGGVSLRPGDGVIHSWLNR-----------MLLPD 479 (835)
T ss_pred EEEEccCCCCCCCHH-----HHHHHHHHHHH---------HH-H-cCCcEeCCCCCeeeecccc-----------cccCC
Confidence 588999999976432 33444444332 22 2 2666799999999999643 68896
Q ss_pred e-EEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHH----HHH-------
Q psy9581 203 I-IVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTI----TKL------- 270 (903)
Q Consensus 203 ~-vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i----~~~------- 270 (903)
+ ++||||||||+|| ||||+|++|++.+|++|.+||+|||+|+|+|+|+|++|||+|||||+| ++.
T Consensus 480 ~vivG~DSHT~t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~ 556 (835)
T PRK09238 480 TVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEK 556 (835)
T ss_pred eEEEecccccCCCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccc
Confidence 5 6999999999998 789999999999999999999999999999999999999999999999 553
Q ss_pred -hhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeec-CCHHHHHHHhcc----------CCC-----hhhH
Q psy9581 271 -LRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFP-VDKITVNYFYNT----------GRN-----NLEI 333 (903)
Q Consensus 271 -L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp-~D~~t~~YL~~~----------gR~-----~~~~ 333 (903)
++.++++||+|||. |+++||+++|||||||++|+||++|+|| +|++|++||+.+ ||. ..++
T Consensus 557 ~~g~~~~~gr~lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~ 634 (835)
T PRK09238 557 KGKKNIFSGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRI 634 (835)
T ss_pred cCCccceeeeEEEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHH
Confidence 44556789999995 6999999999999999999999999999 788999999986 654 2356
Q ss_pred HHHHHHHHhcccccCCCcCccccceEEEEECCCc-ccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccc
Q psy9581 334 KAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNV-SPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNK 412 (903)
Q Consensus 334 ~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~v-eP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (903)
+.+++|++.+.+|. +|+||+ |+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 635 ~~~~~w~~~~~ll~-aD~dA~-Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~----------------------- 689 (835)
T PRK09238 635 AAMEEWLANPELLE-ADADAE-YAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT----------------------- 689 (835)
T ss_pred HHHHHHHhhccccc-CCCCCc-eEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC-----------------------
Confidence 67888988888886 899999 999999999999 9999999999999999998651
Q ss_pred eeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhc
Q psy9581 413 IYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492 (903)
Q Consensus 413 ~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~a 492 (903)
+||+||||||| |+++|++.||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++
T Consensus 690 -------------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~A 749 (835)
T PRK09238 690 -------------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKA 749 (835)
T ss_pred -------------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHc
Confidence 46789999999 9999999999999 999999999999999999999999999999999999
Q ss_pred CCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 493 G~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
||.|..||||+|+|+.+. +.+|+ ++|||+||||+||||+ .+++||+||++|||+||+|+|+
T Consensus 750 Ga~v~~pGCg~C~G~~~~--------~~~ge---~~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 750 GARIEMPGCSLCMGNQAR--------VADGA---TVFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred CCEECCCcchhhhCccCc--------CCCCC---EEEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 999999999999999654 34577 5799999999999997 6689999999999999999998
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=6.9e-98 Score=875.42 Aligned_cols=409 Identities=21% Similarity=0.299 Sum_probs=352.5
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
.+|+||||.++.|.. ..++|++|.+++|.|++||.|||+++..|.+| ...++||++
T Consensus 372 ~TlaeKIl~~a~G~~--------------~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~~l----~~~vfdpd~------ 427 (844)
T TIGR00117 372 FTLAQKMVGRACGVK--------------GIRPGTYCEPKMTTVGSQDTTGPMTRDELKEL----ACLGFSADL------ 427 (844)
T ss_pred hhHHHHHHHHhhCCC--------------CCCCCCEEEEECcEEeeeccccHHHHHHHHHh----CCceECCCc------
Confidence 489999999888863 24789999999999999999999999877654 113445544
Q ss_pred eEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCC
Q psy9581 123 VDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD 202 (903)
Q Consensus 123 v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~ 202 (903)
+.+++||.+|.... ...+.++.+++ |+.+ +++.+++||+|||||++.|+ ++|+
T Consensus 428 v~~~~DH~~p~~~~-----~~a~~~~~lr~---------Fa~~--~Gi~~~~pG~GI~Hqvl~e~-----------~~PG 480 (844)
T TIGR00117 428 VLQSFCHTAAYPKP-----VDVNTHHTLPD---------FIMN--RGGVALRPGDGVIHSWLNRM-----------LLPD 480 (844)
T ss_pred EEEEeCCCCCCCCH-----HHHHHHHHHHH---------HHHH--cCCeEECCCCceecccchhh-----------ccCC
Confidence 58899999987643 23344444433 2222 35667999999999998773 6786
Q ss_pred -eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHH------HHhhh--
Q psy9581 203 -IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTIT------KLLRK-- 273 (903)
Q Consensus 203 -~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~------~~L~~-- 273 (903)
+++||||||||+ +| ||+|+|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.|+.
T Consensus 481 ~vivG~DSHT~t~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k 557 (844)
T TIGR00117 481 TVGTGGDSHTRFP--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEK 557 (844)
T ss_pred eeEEecccccccc--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeeccc
Confidence 569999999997 67 9999999999999999999999999999999999999999999999994 34433
Q ss_pred ----cCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHH-HHHHHhcc----------CCCh-----hhH
Q psy9581 274 ----KNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKI-TVNYFYNT----------GRNN-----LEI 333 (903)
Q Consensus 274 ----~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~-t~~YL~~~----------gR~~-----~~~ 333 (903)
+|++||+|||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+ ||.+ .++
T Consensus 558 ~g~~ng~~gk~lEf~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~ 635 (844)
T TIGR00117 558 KGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRI 635 (844)
T ss_pred ccccccccceEEEEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHH
Confidence 55789999996 59999999999999999999999999999965 89999984 6643 356
Q ss_pred HHHHHHHHhcccccCCCcCccccceEEEEECCCc-ccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccc
Q psy9581 334 KAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNV-SPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNK 412 (903)
Q Consensus 334 ~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~v-eP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (903)
+.+++|.+...+|. +|++|+ |+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 636 ~~~e~w~~~~~ll~-aD~dA~-Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~----------------------- 690 (844)
T TIGR00117 636 QGMEKWLANPELLE-ADADAE-YAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD----------------------- 690 (844)
T ss_pred HHHHHHHhhccccc-CCCCCc-eEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc-----------------------
Confidence 77888988777786 899999 999999999999 9999999999999999998651
Q ss_pred eeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhc
Q psy9581 413 IYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492 (903)
Q Consensus 413 ~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~a 492 (903)
+||++|||||| |+++|++.||.+| ||++++| ||++|+|||++|+++|+++|++++|.++
T Consensus 691 -------------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~A 749 (844)
T TIGR00117 691 -------------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAA 749 (844)
T ss_pred -------------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHc
Confidence 46789999999 7999999999999 9999988 9999999999999999999999999999
Q ss_pred CCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 493 G~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
||.|..||||+|+|+.+.+ .+|+ ++|||+||||+||||+ .+++|||||++||||||+|+|+
T Consensus 750 Ga~i~~pGCg~C~Gn~~~v--------~~Ge---~vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 750 GARTEIPGCSLCMGNQARV--------ADGA---TVFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred CCEECCCccccccCCCCcC--------CCCC---EEEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCcccC
Confidence 9999999999999996653 3466 5799999999999998 5689999999999999999998
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=7.2e-96 Score=855.51 Aligned_cols=411 Identities=21% Similarity=0.277 Sum_probs=351.9
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
.+|+||||.++.|.. ...++|++|.+++|.|++||.|||+++..|.+|. -++.||+++
T Consensus 444 ~TlaEKIl~~a~G~~-------------~~V~pGe~v~~~vD~v~sqD~TGPmt~~efkel~----~~~~dpdkv----- 501 (938)
T PLN00094 444 FTLAQKMVGKACGVD-------------EGILPGTYCEPRMTTVGSQDTTGPMTRDELKDLA----CLGFSADLV----- 501 (938)
T ss_pred hhHHHHHHHHHhCCC-------------CCCCCCCEEEEECcEEeeeccccHHHHHHHHHhc----ccccCcccE-----
Confidence 488999999888752 1147899999999999999999999988775441 136677664
Q ss_pred eEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCC
Q psy9581 123 VDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD 202 (903)
Q Consensus 123 v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~ 202 (903)
.+++||.+|+... . ..+.++.+++ | +++ .++.+++||+|||||++.| ++.|+
T Consensus 502 -~~~fDH~ap~p~~--~---~~~~~~~lr~------F---a~~--~Gi~~~~~G~GI~HqvL~e-----------~~lPG 553 (938)
T PLN00094 502 -MQSFCHTAAYPKP--V---DVVTHHTLPD------F---IRN--RGGVSLRPGDGVIHSWLNR-----------MLLPD 553 (938)
T ss_pred -EEEccCCCCCCCH--H---HHHHHHHHHH------H---HHH--cCCEEECCCCceecccccc-----------cccCC
Confidence 8999999887643 1 2222222222 2 222 2666899999999999766 56775
Q ss_pred -eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHH------HHhhh--
Q psy9581 203 -IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTIT------KLLRK-- 273 (903)
Q Consensus 203 -~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~------~~L~~-- 273 (903)
+++|+|||||+..|+ +||.|++|++.+|+||++||+|||+|+|+|+|+|++|||+|||||+|+ +.|+.
T Consensus 554 ~vivGgDSHT~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k 630 (938)
T PLN00094 554 TVGTGGDSHTRFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEK 630 (938)
T ss_pred eEEEeecCCCCCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhh
Confidence 689999999987775 568899999999999999999999999999999999999999999996 44443
Q ss_pred ----cCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCH-HHHHHHhc----------cCCC-----hhhH
Q psy9581 274 ----KNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDK-ITVNYFYN----------TGRN-----NLEI 333 (903)
Q Consensus 274 ----~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~-~t~~YL~~----------~gR~-----~~~~ 333 (903)
.+++||+||| +|+++||+++|||||||++|+||++|+||+|+ +|++||+. +|+. ++++
T Consensus 631 ~gk~~~f~GkilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri 708 (938)
T PLN00094 631 KGKKNVFSGRILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRI 708 (938)
T ss_pred cCccceEeeEEEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHH
Confidence 3458999999 67999999999999999999999999999995 78999986 4532 3456
Q ss_pred HHHHHHHHhcccccCCCcCccccceEEEEECCCc-ccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccc
Q psy9581 334 KAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNV-SPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNK 412 (903)
Q Consensus 334 ~~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~v-eP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (903)
+.+++|.+...+|. +|+||+ |+++|+||||+| ||+||+|++|||++||+|+.+
T Consensus 709 ~~~e~w~~~~~ll~-aD~dA~-Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g------------------------ 762 (938)
T PLN00094 709 ARMQQWLADPELLE-ADPDAE-YAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG------------------------ 762 (938)
T ss_pred HHHHHHHhhccccc-CCCCCc-eEEEEEEEhHHCCCCeEeCCCChhhceECchhcC------------------------
Confidence 78889988877775 899999 999999999999 999999999999999999765
Q ss_pred eeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhc
Q psy9581 413 IYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492 (903)
Q Consensus 413 ~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~a 492 (903)
.+||+||||||| |+++|++.||++| +|+++++.||++|+|||++|+++|+++|++++|.++
T Consensus 763 ------------~kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~A 823 (938)
T PLN00094 763 ------------DKIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTV 823 (938)
T ss_pred ------------CccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhC
Confidence 146789999999 7999999999999 899999999999999999999999999999999999
Q ss_pred CCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 493 G~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
||.|..||||+|+|+++.+ .+|+ ++|||+||||+||||+ .+++||+||++|||+||+|+|+
T Consensus 824 GA~i~~PGCg~CmG~~g~l--------~~Ge---v~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 824 GARTEMPGCSLCMGNQARV--------AEKS---TVVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred CCEEcCCccccccCCCCcC--------CCCC---eEEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 9999999999999996654 3566 5799999999999997 5689999999999999999998
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=3.3e-63 Score=488.09 Aligned_cols=170 Identities=62% Similarity=1.012 Sum_probs=166.2
Q ss_pred ecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCcee
Q psy9581 670 ILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTY 749 (903)
Q Consensus 670 ~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~ 749 (903)
++||+||||||||||+|+++||||+||.++||.++|||+||+||||||||+||||+|+|++|+|+ + +.+|++|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~-~-----~~~g~~t~ 74 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLV-P-----GTEGGTTH 74 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhccc-C-----CCCCCcEE
Confidence 47999999999999999999999999999999999999999999999999999999999999998 5 67899999
Q ss_pred ecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcc
Q psy9581 750 YQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNND 829 (903)
Q Consensus 750 ~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~ 829 (903)
|.|+|+.++|||+|++|++.+.++|||||+|||||||||||+|+++++||+||||+||+|||++||+|||||||+|++++
T Consensus 75 ~~p~g~~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~ 154 (171)
T cd01580 75 HPPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGE 154 (171)
T ss_pred ECCCCcEeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEc
Q psy9581 830 SIQSLNITGNEYFDLK 845 (903)
Q Consensus 830 ~~~~l~l~~~e~i~i~ 845 (903)
++++|++++.|+++|.
T Consensus 155 ~~~~l~l~g~e~~~i~ 170 (171)
T cd01580 155 NADSLGLTGEETYDII 170 (171)
T ss_pred CHHhhCCCCceeEEee
Confidence 9999999999999885
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=2.1e-47 Score=427.17 Aligned_cols=409 Identities=22% Similarity=0.317 Sum_probs=325.1
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCe
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPV 123 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v 123 (903)
+|++|++-++-|.. ..++|.++..+..-|-.||.||||.-.+|..| +-+|++.+-+
T Consensus 374 TlaqKmvgrAcGv~--------------girpGtycepkmttVGSQDTTGpMTrdElk~l----AclgfsaD~v------ 429 (852)
T COG1049 374 TLAQKMVGRACGVP--------------GIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFSADLV------ 429 (852)
T ss_pred cHHHHHhhhccCCc--------------cccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhcccchhh------
Confidence 78888887766643 25899999999999999999999997776654 3457764322
Q ss_pred EEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCCe
Q psy9581 124 DLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDI 203 (903)
Q Consensus 124 ~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~~ 203 (903)
.-.+.|..-.. . + ...+. ++.-..|+. .+.++. ..||.||+|.++-- ++.||+
T Consensus 430 mQSfCHTAayp--k-p--vdv~t------h~~Lp~Fi~----~rGgVs-lrpgdGVIHswLNr-----------mllpDt 482 (852)
T COG1049 430 MQSFCHTAAYP--K-P--VDVKT------HHTLPDFIM----NRGGVS-LRPGDGVIHSWLNR-----------MLLPDT 482 (852)
T ss_pred hhhcccccccC--C-c--cchhc------cccchHHHh----hcCcee-cCCCCccHHHHHHh-----------ccCCcc
Confidence 12245642211 1 1 11122 223334542 233444 45789999998643 789997
Q ss_pred E-EecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHH------HHhh--h-
Q psy9581 204 I-VGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTIT------KLLR--K- 273 (903)
Q Consensus 204 v-vGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~------~~L~--~- 273 (903)
| .|+||||.+.=| ++|+.|+-=+|.+.++|.+.|.+||+|.|+++|+++||+|-+||+..|- +.|. +
T Consensus 483 vgtGGDSHTRfpiG---isFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~ 559 (852)
T COG1049 483 VGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKK 559 (852)
T ss_pred eecCCccccccccc---ceecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheecccc
Confidence 6 899999999877 4889999999999999999999999999999999999999999997663 3344 2
Q ss_pred --cC-ccceEEEEecCcccCCCcccchhhccccccccceeeeec-CCHHHHHHHhcc----------CCCh-----hhHH
Q psy9581 274 --KN-VVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFP-VDKITVNYFYNT----------GRNN-----LEIK 334 (903)
Q Consensus 274 --~g-~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp-~D~~t~~YL~~~----------gR~~-----~~~~ 334 (903)
++ ..|+++|. +|+.+|.+++-++++..++|..|..+.+- .++...+||+.. |-.+ ..++
T Consensus 560 ~k~NiFsGRIlEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~ 637 (852)
T COG1049 560 GKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRID 637 (852)
T ss_pred CccceecceeEEe--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 22 25999999 56999999999999999999999887654 677788999852 3221 2466
Q ss_pred HHHHHHHhcccccCCCcCccccceEEEEECCCc-ccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccce
Q psy9581 335 AFESYFKSQKLFGIPKIGEIDYTDIITLNLDNV-SPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKI 413 (903)
Q Consensus 335 ~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~v-eP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (903)
..|+|.....|. .+|.||+ |..+|+|||++| ||++|+|.+||++..++++.++
T Consensus 638 ~me~wla~p~ll-e~D~dAe-YaavIeidL~~IkEPila~PNdpDd~r~lse~~~~------------------------ 691 (852)
T COG1049 638 KMEAWLANPELL-EADADAE-YAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD------------------------ 691 (852)
T ss_pred HHHHhhcCcccc-CCCCCCc-eeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC------------------------
Confidence 778887766665 3899999 999999999999 8999999999999999997651
Q ss_pred eccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcC
Q psy9581 414 YITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLG 493 (903)
Q Consensus 414 ~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG 493 (903)
+||-+|||||.. .+-+++++|++| +|.+-.-..|+.|+|-++...++|.++|++.+|-++|
T Consensus 692 ------------~idevFiGSCMt-niGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~ag 752 (852)
T COG1049 692 ------------KIDEVFIGSCMT-NIGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAG 752 (852)
T ss_pred ------------ccceeeeehhhc-cchhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhcc
Confidence 367799999986 678999999999 4443222389999999999999999999999999999
Q ss_pred CEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 494 FNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 494 ~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
+++.-|||+.|+||... +.+|. +.+||++|||++|+|... .+||+|.+++|.+||-|+|.
T Consensus 753 ar~E~PGCsLCMGNQar--------v~dga---tV~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGkiP 812 (852)
T COG1049 753 ARIEMPGCSLCMGNQAR--------VADGA---TVFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKIP 812 (852)
T ss_pred ceecCCCcccccccHhh--------hccCC---EEEeeccccCCccccccc-ceeeeccHHHHHHHHHcCCC
Confidence 99999999999999643 45666 469999999999999864 69999999999999999885
No 36
>KOG0454|consensus
Probab=100.00 E-value=2.4e-42 Score=376.63 Aligned_cols=398 Identities=21% Similarity=0.244 Sum_probs=258.0
Q ss_pred HHHHHhcccccC--CCcCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCcccccccccee
Q psy9581 337 ESYFKSQKLFGI--PKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIY 414 (903)
Q Consensus 337 ~~y~~~~~l~~~--~d~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (903)
.+|.++..+|.+ +|+.+. |+.+++|..-++.|.+.|..+||++.|+.--.++.....+... ..+. .+.+.
T Consensus 12 ~~we~avaywktl~~de~ak-~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~-a~~~------ersL~ 83 (502)
T KOG0454|consen 12 CKWESAVAYWKTLFPDESAK-SDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKIL-ARAS------ERSLV 83 (502)
T ss_pred cchhhhhhhhhcccCccccc-ceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccchHHH-Hhhh------hhcee
Confidence 345666667765 789999 9999999999999999999999999999875554322111100 0000 11233
Q ss_pred ccC--CceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCcee-EEEecCCHHHHHHHHHCCchHHHHh
Q psy9581 415 ITK--NGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIK-TSFTPGSRVVTEYLNNSGLLLYLEK 491 (903)
Q Consensus 415 ~~~--~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk-~~v~PgS~~V~~~l~~~Gll~~l~~ 491 (903)
++| ....+.--.+|.+|||||||++.+||+.||+++ +|.|++-.+| .+++|||+.|.++++.+||.++|.+
T Consensus 84 ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~e 157 (502)
T KOG0454|consen 84 YMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNE 157 (502)
T ss_pred eccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHh
Confidence 443 223444556788999999999999999999988 9999988887 7899999999999999999999999
Q ss_pred cCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhccccccCCCC
Q psy9581 492 LGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIE 571 (903)
Q Consensus 492 aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~ 571 (903)
+||.+...||..|.|+.-......+ .|-+|+|||||||+|... ..+|+||.+.+|..+.|+-.- +..-
T Consensus 158 agF~wreagcs~clgmnpd~l~~ye----------rcastsnRnfEgrqGa~s-rThlma~s~qfAagi~~~~~~-~~~~ 225 (502)
T KOG0454|consen 158 AGFYWREAGCSFCLGMNPDGLCHYE----------RCASTSNRNFEGRQGADS-RTHLMAASMQFAAGIGGHDLG-FREF 225 (502)
T ss_pred hceehhhccccccccCCchhccHHH----------HhhhccCCCccccccccc-cchhhhhhHHhhccccccccc-cccc
Confidence 9999999999999998854444333 257899999999999986 569999999999999998761 1111
Q ss_pred CcccCCCCCeeecCCCCCChhhhhhhhhhccCc--chhhhcccccCCC-CCCCcccccccccCccccC-CCccccCCCCC
Q psy9581 572 PLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNK--NLFYFNYKNIKNN-PGKLWSNISDTVIDNIYNW-PISTYISQPPF 647 (903)
Q Consensus 572 plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~--~~f~~~~~~~~~~-~~~~w~~~~~~~~~~~~~w-~~styi~~ppf 647 (903)
+ |+.. ....|+.. + .++. ..+...+..+.+- ... -..+.- .....++- +.| +..++|
T Consensus 226 ~------~k~~--~~~~Ps~~-l------~~~g~s~sv~~~~~li~~ia~ds-~t~i~~-~at~e~~s~~sS--l~m~~F 286 (502)
T KOG0454|consen 226 T------GKDS--LKVSPSPF-L------TLKGESPSVLPAKDLIVSIATDS-STDIPR-VATMEFSSTTSS--LGMETF 286 (502)
T ss_pred c------cccc--ccCCCCce-E------EeCCCCccccccccchhhhhccc-cccccc-eecccCCCcccc--ccCcce
Confidence 0 1100 01112220 0 0000 0000000000000 000 000000 00000000 000 111222
Q ss_pred CCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhcccccccc
Q psy9581 648 FNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNK 727 (903)
Q Consensus 648 f~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~ 727 (903)
..+..++.|||+||.|||+ +||+. +.+.. ..+..|..+
T Consensus 287 -----------------~tLc~vv~dNiDTD~IIP~----------qfltl--i~~~~-------------~~~~~f~~~ 324 (502)
T KOG0454|consen 287 -----------------HTLCGVVADNIDTDQIIPA----------QFLTL--IPSTG-------------LILSCFYEV 324 (502)
T ss_pred -----------------eeeehhhhhhCCcCcccCh----------hhhcc--cccch-------------hhhhhhhhh
Confidence 1223456699999999998 78765 22222 235677777
Q ss_pred chhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecch
Q psy9581 728 RIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSF 807 (903)
Q Consensus 728 r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf 807 (903)
+++-. + + .-...|.++ +| .|+.. .|+|+|.|||||||||||+|++.+.|+++|||+||
T Consensus 325 ~~dg~---~--k--~~~~dFv~~---vE---------~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sy 382 (502)
T KOG0454|consen 325 ALDGL---P--K--SFVTDFVLP---VE---------PLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSY 382 (502)
T ss_pred eecCC---c--h--hhccceecc---cc---------cccee---EEEeccCCcccccccccCcchhhhcccceecchhH
Confidence 65321 0 0 002233322 22 34433 79999999999999999999999999999999999
Q ss_pred hHHHhhhhccCccceEEecCcccccccccCCCcEEEEc
Q psy9581 808 ERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLK 845 (903)
Q Consensus 808 ~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~ 845 (903)
+|||++|++.+|.+|..-+...-.+ ....+|...+.
T Consensus 383 a~IFfrN~~atG~l~~~~s~~~v~d--e~~~~dv~~v~ 418 (502)
T KOG0454|consen 383 ARIFFRNSVATGELPPLPSEVRVCD--ECVTGDVYTVE 418 (502)
T ss_pred HHHHHHhHHhcCCccCCCceeeecc--cceecceeeEE
Confidence 9999999999999887544332222 23345555554
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=3.5e-39 Score=314.15 Aligned_cols=149 Identities=30% Similarity=0.481 Sum_probs=130.6
Q ss_pred ecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCcee
Q psy9581 670 ILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTY 749 (903)
Q Consensus 670 ~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~ 749 (903)
|..+||||||||||| .||+ .|||.+-+++++|... .|++++ +-+..+
T Consensus 1 k~~g~~tTDhI~pag---------~~l~--------------~R~~l~~is~~~~~~a---------~n~~~~-~~~~~~ 47 (149)
T cd01578 1 KAKGKCTTDHISAAG---------PWLK--------------YRGHLDNISNNLLIGA---------INAENG-KANSVK 47 (149)
T ss_pred CCCCccCcccccCCC---------cccc--------------cccCHHHHHHHHhhhh---------hhhhcc-cccccc
Confidence 456899999999995 6775 4899999999888631 233344 567888
Q ss_pred ecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcc
Q psy9581 750 YQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNND 829 (903)
Q Consensus 750 ~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~ 829 (903)
+..+|+.++++++|++|++.+.++|||||+|||||||||||+|+++++||+||||+||+|||++||+|+|||||+|++++
T Consensus 48 ~~~~g~~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~ 127 (149)
T cd01578 48 NQVTGEYGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPA 127 (149)
T ss_pred ccCCCcccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccCCCcEEEEcCcccccCCC
Q psy9581 830 SIQSLNITGNEYFDLKGISKKIKPL 854 (903)
Q Consensus 830 ~~~~l~l~~~e~i~i~~~~~~l~~g 854 (903)
+++. ++++|+++|.+++ +++||
T Consensus 128 ~~~~--i~~gd~i~i~~l~-~l~pg 149 (149)
T cd01578 128 DYDK--IHPDDKVDILGLT-DFAPG 149 (149)
T ss_pred HHHh--cCCCCEEEEecCc-cCCCC
Confidence 7775 6899999998766 46664
No 38
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-35 Score=293.33 Aligned_cols=166 Identities=23% Similarity=0.344 Sum_probs=129.5
Q ss_pred eEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCC
Q psy9581 666 RALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEG 745 (903)
Q Consensus 666 ~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g 745 (903)
+++....|||+||+|+|+ |||+. +++.+|. +++|+++|+. .+
T Consensus 10 ~~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl~-------------k~~f~~~r~~-------------~P 51 (191)
T COG0066 10 RVWPLGRDNVDTDQIIPK----------RFLKT--ITRTGLG-------------KHLFEDWRYL-------------DP 51 (191)
T ss_pred eEEecCCCCCccccCccH----------HHhcc--cCHhhhh-------------hccccccccc-------------Cc
Confidence 766555599999999996 99987 6787774 6689999863 24
Q ss_pred CceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEe
Q psy9581 746 GFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQF 825 (903)
Q Consensus 746 ~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~ 825 (903)
.|.++.| +|+. ++|||||+|||||||||||+|||+.+||+||||+||+|||++||+|+||||+..
T Consensus 52 dF~~n~~------------~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~ 116 (191)
T COG0066 52 DFVLNVP------------PYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVL 116 (191)
T ss_pred chhhcCC------------ccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceec
Confidence 6777765 5653 489999999999999999999999999999999999999999999999999988
Q ss_pred cCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhc----CcHHHHHHHh
Q psy9581 826 LNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQND----GILPFVLREL 900 (903)
Q Consensus 826 ~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aG----Gll~yv~~~~ 900 (903)
++.+-.+.+....|++++|+... + .| +..+|.+. . ...+++.+++|.+| ||+.|.++++
T Consensus 117 ~~~~~~~l~~~~~g~~i~VDL~~-----~-~v----~~~~~~~~-~-----f~i~~f~~~~L~~GlD~iGlt~~~~~~i 179 (191)
T COG0066 117 AEEDVTELFEDVPGDEVTVDLET-----G-EV----TNPTGGEE-P-----FEIDDFRREILLNGLDDIGLTLQHKKEI 179 (191)
T ss_pred ChHHHHHHHHhCCCCEEEEEcCC-----C-eE----EeCCCCEE-E-----ccCCHHHHHHHHcCCcccchHHHHHHHH
Confidence 76522222222358899998643 2 22 23334332 2 33489999999999 9999999876
No 39
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=1.3e-34 Score=290.03 Aligned_cols=157 Identities=26% Similarity=0.392 Sum_probs=123.7
Q ss_pred EEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCc
Q psy9581 668 LCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGF 747 (903)
Q Consensus 668 l~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~ 747 (903)
+.++|||||||||+|+ +||+. .|.+.|.+++|.++| + +|
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-------p---------~f 42 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-------P---------EF 42 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-------c---------ch
Confidence 5689999999999997 89854 345667788998764 1 22
Q ss_pred eeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecC
Q psy9581 748 TYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827 (903)
Q Consensus 748 ~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~ 827 (903)
.. +. ..++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++
T Consensus 43 ~~---------------~~---~~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~ 104 (163)
T PRK00439 43 AK---------------KV---KPGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE 104 (163)
T ss_pred Hh---------------hc---CCceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh
Confidence 21 22 2358999999999999999999999999999999999999999999999999999975
Q ss_pred cccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHhh
Q psy9581 828 NDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901 (903)
Q Consensus 828 ~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~~ 901 (903)
. ++. ++.+|+++|+... + .| ++ .++|+ ++.+ ...++.+++++++||+++|++++..
T Consensus 105 ~--~~~--l~~gd~i~idl~~-----~-~v--~~-~~~g~---~~~f--~~l~~~~~~il~aGGl~~~~~~~~~ 160 (163)
T PRK00439 105 A--VDK--IEDGDEVEVDLET-----G-VI--TN-LTTGE---EYKF--KPIPEFMLEILKAGGLIEYLKKKGR 160 (163)
T ss_pred H--HHh--cCCCCEEEEECCC-----C-EE--Ee-CCCCe---EEEE--eeCCHHHHHHHHcCCHHHHHHHhcc
Confidence 3 443 6889999998532 3 33 22 23355 3343 3459999999999999999998863
No 40
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.1e-34 Score=287.57 Aligned_cols=152 Identities=24% Similarity=0.365 Sum_probs=119.4
Q ss_pred EEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCc
Q psy9581 668 LCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGF 747 (903)
Q Consensus 668 l~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~ 747 (903)
+.++||||+||||+|+ +||.. . +.|.|.+++|.++| + +|
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~--~-------------~~~~l~~~~f~~~~-------p---------~f 41 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT--T-------------DPDELASHAMEGID-------P---------EF 41 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc--C-------------CHHHHHhhccCcCC-------c---------hh
Confidence 4689999999999996 99854 2 34566788898653 1 22
Q ss_pred eeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecC
Q psy9581 748 TYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827 (903)
Q Consensus 748 ~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~ 827 (903)
.. +. ..++|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+||||+++++
T Consensus 42 ~~---------------~~---~~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~ 103 (154)
T TIGR02087 42 AK---------------KV---RPGDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT 103 (154)
T ss_pred hh---------------cC---CCCcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH
Confidence 11 11 2258999999999999999999999999999999999999999999999998888865
Q ss_pred cccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHH
Q psy9581 828 NDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRE 899 (903)
Q Consensus 828 ~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~ 899 (903)
+ .++.+++++|+... + +|+ .++|+ ++ .+.++|+.+++++++||+++|++++
T Consensus 104 -~-----~i~~gd~i~vdl~~-----~-~v~----~~~g~---~~--~~~~l~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 104 -E-----GIKDGDEVTVDLET-----G-EIR----VNGNE---EY--KGEPLPDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred -H-----HCCCCCEEEEECCC-----C-EEE----ECCCe---EE--EEeCCCHHHHHHHHcCCHHHHHhcC
Confidence 1 26788999998532 3 332 24454 33 3466799999999999999999874
No 41
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=1.3e-34 Score=287.61 Aligned_cols=154 Identities=27% Similarity=0.404 Sum_probs=118.3
Q ss_pred EEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCc
Q psy9581 668 LCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGF 747 (903)
Q Consensus 668 l~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~ 747 (903)
+.++||||+||||+|+ +||.. .|.+.|.+++|.++| + +|
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-------p---------~f 41 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-------K---------DF 41 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-------h---------hH
Confidence 4689999999999996 88853 355677788998653 1 11
Q ss_pred eeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecC
Q psy9581 748 TYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827 (903)
Q Consensus 748 ~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~ 827 (903)
+.++ ..++|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|| |+...
T Consensus 42 ---------------~~~~---~~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~- 101 (156)
T TIGR02084 42 ---------------VKKV---KEGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES- 101 (156)
T ss_pred ---------------Hhhc---CCCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-
Confidence 1233 345899999999999999999999999999999999999999999999997 55432
Q ss_pred cccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHH
Q psy9581 828 NDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLR 898 (903)
Q Consensus 828 ~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~ 898 (903)
+..++. +..+|+++|+... + .| + +.++|+ +|++ ++.++.+++++++|||++|+++
T Consensus 102 ~~~~~~--l~~gd~i~idl~~-----~-~v--~-~~~~g~---~~~~--~~~~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 102 EEAVDE--IEEGDEVEVDLEK-----G-II--K-NLTKGK---EYKA--TPFPEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred HHHHHH--hCCCCEEEEECCC-----C-EE--E-EecCCE---EEEe--ecCCHHHHHHHHcCCHHHHhhC
Confidence 334543 6789999998532 3 22 2 223454 4444 4679999999999999999874
No 42
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=287.87 Aligned_cols=155 Identities=26% Similarity=0.434 Sum_probs=121.3
Q ss_pred EEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCc
Q psy9581 668 LCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGF 747 (903)
Q Consensus 668 l~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~ 747 (903)
+.++|||||||+|+|+ +||+. +.|.+.|.+++|.++| + +|
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~--------------~~~~~~l~~~~f~~~~-------p---------~f 43 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPF--------------MVGEDRFHNYAFAHLR-------P---------EF 43 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhcc--------------CCCHHHHHhhhccCCC-------h---------hh
Confidence 4689999999999997 89864 2345667788888653 1 11
Q ss_pred eeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecC
Q psy9581 748 TYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827 (903)
Q Consensus 748 ~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~ 827 (903)
+.+|+ .++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||++.+
T Consensus 44 ---------------~~~~~---~g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~~- 104 (166)
T PRK14023 44 ---------------ASTVR---PGDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFESE- 104 (166)
T ss_pred ---------------HhhcC---CCCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCCH-
Confidence 12343 35899999999999999999999999999999999999999999999999998754
Q ss_pred cccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHh
Q psy9581 828 NDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLREL 900 (903)
Q Consensus 828 ~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~ 900 (903)
.+++. +..+++++|+... + .+ + .+|+ ++ .+.++++.+++++++|||++|++++-
T Consensus 105 -~~~~~--l~~gd~i~vDl~~-----~-~v--~---~~g~---~~--~~~~~~~~~~~il~aGGl~~~~~~~~ 158 (166)
T PRK14023 105 -EVVDA--LEDGDEVELDLET-----G-VL--T---RGGE---TF--QLRPPPEFLLEALKEGSILEYYRKHG 158 (166)
T ss_pred -HHHHH--hCCCCEEEEECCC-----C-EE--E---ECCE---EE--EEeeCCHHHHHHHHcCCHHHHHHHhC
Confidence 33544 5688999998533 2 23 2 2354 33 44557899999999999999999864
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=291.17 Aligned_cols=171 Identities=23% Similarity=0.285 Sum_probs=123.1
Q ss_pred cccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCC---hhhhccccccccchhhhhhhcc
Q psy9581 661 NIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN---HEVMIRGTFSNKRIKNLITILG 737 (903)
Q Consensus 661 ~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN---~~vm~r~~F~n~r~~n~l~~~~ 737 (903)
.++ .|| .++|||||||||+|+ +||+. +++| .+.+.+++|..++ +
T Consensus 68 ~~~-Grv-~k~gDNIdTD~IiPa----------~~l~~-------------~~sn~~~~~~l~~~~F~~l~-------~- 114 (246)
T PLN00072 68 TFH-GLC-FVVGDNIDTDQIIPA----------EYLTL-------------VPSKPDEYEKLGSYALIGLP-------A- 114 (246)
T ss_pred eEE-EeE-EEeCCCcchhhcccH----------HHhcc-------------ccccCCCHHHHHHhhhccCC-------c-
Confidence 444 476 589999999999997 88864 2333 5677888898653 0
Q ss_pred CCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhcc
Q psy9581 738 KNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIG 817 (903)
Q Consensus 738 ~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~ 817 (903)
..+......|+.. ....|||||+|||||||||||+|+++++||+||||+||+|||+|||+|
T Consensus 115 -------~~~~r~v~~Gd~~------------~~~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN 175 (246)
T PLN00072 115 -------FYKTRFVEPGEMK------------TKYSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVA 175 (246)
T ss_pred -------chhhcccCCCCCC------------CCceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHh
Confidence 0011111122210 113799999999999999999999999999999999999999999999
Q ss_pred Cc-cceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHH
Q psy9581 818 MG-ILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFV 896 (903)
Q Consensus 818 ~G-llpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv 896 (903)
+| ++|++.+ ...++. ++.||+++|+.. +..| + +.++|+ +|. +.+.++ +++++++|||++|+
T Consensus 176 ~GLllpi~~~-~~~~e~--i~~Gd~i~VDl~------~~~v--~-n~t~g~---~~~--~~p~~~-~~~Il~aGGl~~y~ 237 (246)
T PLN00072 176 TGEVYPLESE-VRICEE--CKTGDVVTVELG------NSVL--I-NHTTGK---EYK--LKPIGD-AGPVIDAGGIFAYA 237 (246)
T ss_pred CCcceeeccc-HHHHHh--cCCCCEEEEECC------CCEE--E-ECCCCe---EEE--ecCCHH-HHHHHHcCCHHHHH
Confidence 99 7888753 233443 678999999852 2222 2 334565 344 455444 99999999999999
Q ss_pred HHHhh
Q psy9581 897 LRELL 901 (903)
Q Consensus 897 ~~~~~ 901 (903)
+++-+
T Consensus 238 r~~g~ 242 (246)
T PLN00072 238 RKTGM 242 (246)
T ss_pred HhhCC
Confidence 98643
No 44
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.97 E-value=1.3e-32 Score=265.40 Aligned_cols=128 Identities=39% Similarity=0.550 Sum_probs=114.2
Q ss_pred hhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCce
Q psy9581 694 KWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNIST 773 (903)
Q Consensus 694 ~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~ 773 (903)
+||+.+|+...++++|+.+|.||++|.+++|.+.++.|.|. . +..++.+.+.|+++.+++++.+.+|+..+.+.
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~-~-----~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~i 76 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILF-D-----DWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDI 76 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTT-T-----TSCBSSEEETTTTEEETHHHHHHHHHHTTTEE
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhc-c-----CcceeeeeccccCcCCcchhchhhhcccCCCE
Confidence 68899999999999999999999999999999999999887 3 45677888999999999999999999887767
Q ss_pred EEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecC
Q psy9581 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827 (903)
Q Consensus 774 iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~ 827 (903)
||++|+|||||||||||+|+++++||+||||+||+|||++||+|+|||||+|++
T Consensus 77 lv~~g~nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 77 LVVGGENFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp EEEE-SSBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred EEECCCcccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 777789999999999999999999999999999999999999999999999975
No 45
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.97 E-value=1.2e-31 Score=273.24 Aligned_cols=165 Identities=23% Similarity=0.334 Sum_probs=121.2
Q ss_pred ccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCC
Q psy9581 662 IKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNT 741 (903)
Q Consensus 662 i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~ 741 (903)
+.+ +++...+|||+||+|+|+ +||+. +++++| .+++|.++|+.+. . +.
T Consensus 7 ~~G-~~~~l~~dnIDTD~IiP~----------rfl~~--~~~~~l-------------~~~~f~~~R~~~~---~---g~ 54 (188)
T TIGR00171 7 HTG-LVAPLDAANVDTDAIIPK----------QFLKR--ITRTGF-------------GKHLFFDWRFLDA---N---GK 54 (188)
T ss_pred EEE-EEEECCCCcCcHhhhhHH----------HHhCc--CCHHHH-------------HHhcccccccccc---c---cC
Confidence 444 877777999999999997 99976 344443 4789999998421 1 00
Q ss_pred ccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccc
Q psy9581 742 QIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGIL 821 (903)
Q Consensus 742 ~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gll 821 (903)
....+|.++.+ .|+ .++|||||+|||||||||||+|+++.+||+||||+||++||++||+|+|||
T Consensus 55 ~~~p~F~ln~~------------~~~---~~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll 119 (188)
T TIGR00171 55 EPNPDFVLNQP------------QYQ---GASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLL 119 (188)
T ss_pred CCCcchhhccc------------ccC---CCcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCC
Confidence 01345655543 343 358999999999999999999999999999999999999999999999999
Q ss_pred eEEecCccccccc---ccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhc
Q psy9581 822 PLQFLNNDSIQSL---NITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQND 890 (903)
Q Consensus 822 pl~~~~~~~~~~l---~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aG 890 (903)
|++++..+ ...+ ..+.+++++|+... ++| + ..+|++. .|+ .+++.++.|..|
T Consensus 120 ~i~~~~~~-i~~~~~~~~~~g~~i~vDl~~------~~v--~--~~~~~~~-~f~-----i~~~~r~~ll~G 174 (188)
T TIGR00171 120 PIRLSYDE-VKELFGQVENQGLQMTVDLEN------QLI--H--DSEGKVY-SFE-----IDPFRKHCLING 174 (188)
T ss_pred ccccCHHH-HHHHHHHhhCCCCEEEEECCC------CEE--E--eCCCeEE-EEE-----eCHHHHHHHHcC
Confidence 99998533 2222 13788899998532 223 2 2345433 333 278899888887
No 46
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.97 E-value=5.5e-31 Score=271.00 Aligned_cols=163 Identities=24% Similarity=0.361 Sum_probs=121.4
Q ss_pred cccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCC
Q psy9581 661 NIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNN 740 (903)
Q Consensus 661 ~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~ 740 (903)
.+.+ +++.+.||||+||+|+|+ +||+. +++++ +.+++|.++|+... .
T Consensus 6 ~i~G-~~~~l~~dnIDTD~IiPa----------~fl~~--~~~~~-------------l~~~~f~~~r~~~~---~---- 52 (200)
T PRK01641 6 THTG-LAVPLDRANVDTDQIIPK----------QFLKR--ITRTG-------------FGKGLFDDWRYLDD---G---- 52 (200)
T ss_pred EEEE-EEEEcCCCCCChhhcchH----------hHcCc--CCHHH-------------HHHhhhcccccccc---C----
Confidence 3444 888888999999999997 99865 34443 45889999987532 0
Q ss_pred CccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCcc
Q psy9581 741 TQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGI 820 (903)
Q Consensus 741 ~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gl 820 (903)
...++|.++.+ .|+ .++|||||+|||||||||||+|+++.+||+||||+||++||++||+|+||
T Consensus 53 -~~~p~F~ln~~------------~~~---~~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gl 116 (200)
T PRK01641 53 -QPNPDFVLNQP------------RYQ---GASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGL 116 (200)
T ss_pred -CCCCCcccccc------------ccC---CCeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCC
Confidence 11245554433 443 35899999999999999999999999999999999999999999999999
Q ss_pred ceEEecCccccccc--cc--CCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhc
Q psy9581 821 LPLQFLNNDSIQSL--NI--TGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQND 890 (903)
Q Consensus 821 lpl~~~~~~~~~~l--~l--~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aG 890 (903)
||++++.. +.+.| .+ +.++.++|+... +.| + ..|+ ++++ . .++..+++|.+|
T Consensus 117 l~i~~~~~-~i~~l~~~~~~~~g~~i~vDl~~------~~v--~---~~~~---~~~f--~-i~~~~~~~l~~G 172 (200)
T PRK01641 117 LPIVLPEE-DVDELFKLVEANPGAELTVDLEA------QTV--T---APDK---TFPF--E-IDPFRRHCLLNG 172 (200)
T ss_pred CeEeeCHH-HHHHHHHHHhcCCCCEEEEEcCC------CEE--e---cCCe---EEEE--E-cCHHHHHHHHcC
Confidence 99999743 23333 13 678889998533 222 2 2244 3333 3 389999999999
No 47
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=6.3e-31 Score=251.28 Aligned_cols=120 Identities=42% Similarity=0.623 Sum_probs=94.8
Q ss_pred ecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCcee
Q psy9581 670 ILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTY 749 (903)
Q Consensus 670 ~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~ 749 (903)
++|||||||||+|++. +||. .|++.+.|.+++|.+.+ . .|.
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~--------------~~~~~~~l~~~~f~~~~--p--------------~f~- 41 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLP--------------LRSNIPAISEFVFHRVD--P--------------TFA- 41 (121)
T ss_pred CCCCcCChhhcCCCCc--------cccc--------------cCCCHHHHHHhhccCCC--c--------------hHH-
Confidence 5799999999999842 3553 24666778888898542 1 111
Q ss_pred ecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcc
Q psy9581 750 YQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNND 829 (903)
Q Consensus 750 ~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~ 829 (903)
.+.+. +...|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|||||++++..
T Consensus 42 --------------~~~~~-~~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~ 106 (121)
T cd01579 42 --------------ERAKA-AGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADED 106 (121)
T ss_pred --------------hhccc-CCCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChh
Confidence 12221 223699999999999999999999999999999999999999999999999999998665
Q ss_pred cccccccCCCcEEEEc
Q psy9581 830 SIQSLNITGNEYFDLK 845 (903)
Q Consensus 830 ~~~~l~l~~~e~i~i~ 845 (903)
.++. ++.||+++|+
T Consensus 107 ~~~~--~~~gd~i~id 120 (121)
T cd01579 107 DYDR--FEQGDQLELP 120 (121)
T ss_pred hHhh--cCCCCEEEcC
Confidence 5553 7889988886
No 48
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.94 E-value=1.9e-27 Score=214.58 Aligned_cols=71 Identities=38% Similarity=0.659 Sum_probs=65.6
Q ss_pred eEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEc
Q psy9581 773 TIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLK 845 (903)
Q Consensus 773 ~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~ 845 (903)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|+...++++ ++.||+++|+
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~--i~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLK--LHTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhh--cCCCCEEEeC
Confidence 6999999999999999999999999999999999999999999999999999997766654 6888888876
No 49
>KOG0454|consensus
Probab=99.94 E-value=1.5e-27 Score=261.17 Aligned_cols=418 Identities=13% Similarity=0.034 Sum_probs=299.7
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHH-HHHHHHHHHcCCCCCccCCCCC
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDL-AAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dl-aamr~~~~~~g~dp~~v~p~~~ 122 (903)
++.|+|+.+...+.+ ...|..++..+|-.++||..++-+..-+ +.||++ ....|++|
T Consensus 68 ~vtd~i~a~~~ersL--------------~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~a--AaVv~g~K------ 125 (502)
T KOG0454|consen 68 TVTDKILARASERSL--------------VYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREA--AAVVDGEK------ 125 (502)
T ss_pred ccchHHHHhhhhhce--------------eeccCCCCcccceeeecceeccccccccHHHHhhh--hhccccce------
Confidence 677888776544322 3568889999999999998877665322 122322 22345555
Q ss_pred eEEEecccCccCcccccchHHHHH--HHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceeccccccc
Q psy9581 123 VDLIVDHSIQVDFFREKKSLDLNM--QLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYY 200 (903)
Q Consensus 123 v~lviDH~v~~~~~~~~~a~~~n~--~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~ 200 (903)
+...+||.+-+...+ +.+|+ .++.-|-...-.| .|-..- -+|..-+--.|+||.-..- ++.-.
T Consensus 126 ia~n~k~am~vpgsg----lvkk~aeaegld~if~eagF-~wreag-cs~clgmnpd~l~~yerca---------stsnR 190 (502)
T KOG0454|consen 126 IAVNPKHAMFVPGSG----LVKKVAEAEGLDRIFNEAGF-YWREAG-CSFCLGMNPDGLCHYERCA---------STSNR 190 (502)
T ss_pred eEecccceEEecCch----hhHhHHHHHhhHHHHHhhce-ehhhcc-ccccccCCchhccHHHHhh---------hccCC
Confidence 477899987766443 12222 1111111111122 343221 2444444446888873322 23445
Q ss_pred C-CeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccce
Q psy9581 201 P-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGK 279 (903)
Q Consensus 201 P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk 279 (903)
| ....|+||||++.++.+.++.|+|+.++....-++...+++|.++.+++.|..++-..++|+++.++...-..+...+
T Consensus 191 nfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~a 270 (502)
T KOG0454|consen 191 NFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVA 270 (502)
T ss_pred CccccccccccchhhhhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhcccccccccee
Confidence 5 678999999999999999999999999999999999999999999999999999999999999999888777888899
Q ss_pred EEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcC-ccccce
Q psy9581 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIG-EIDYTD 358 (903)
Q Consensus 280 ~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~-a~~Y~~ 358 (903)
..||.+--. +|+++.|+|+|||..|-+-|-+++|+|-.|+-|-....++. +- -|+ .|.+ +. |..
T Consensus 271 t~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~-----f~-------~~~-~dg~~k~-~~~ 335 (502)
T KOG0454|consen 271 TMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSC-----FY-------EVA-LDGLPKS-FVT 335 (502)
T ss_pred cccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhhhhh-----hh-------hhe-ecCCchh-hcc
Confidence 999987666 89999999999999999999999999877776654333221 11 122 3444 45 888
Q ss_pred EEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCC
Q psy9581 359 IITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNT 438 (903)
Q Consensus 359 vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~ 438 (903)
.+.+|.+..+|..+.|+. ||.--=++- .|-+|+..++|+|+-.
T Consensus 336 dFv~~vE~~~~~siii~~-DNFGCGSSR------------------------------------EHAPv~L~~~Gakaiv 378 (502)
T KOG0454|consen 336 DFVLPVEPLRKYSIIIGG-DNFGCGSSR------------------------------------EHAPVCLGAAGAKAIV 378 (502)
T ss_pred ceeccccccceeEEEecc-CCccccccc------------------------------------ccCcchhhhcccceec
Confidence 899999999999999987 665322221 1335677899999999
Q ss_pred CchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHH-----HHHHC---CchHHHHhcCCEEeccCCccccCCCCC
Q psy9581 439 SNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTE-----YLNNS---GLLLYLEKLGFNIVAYGCATCIGNSGK 510 (903)
Q Consensus 439 s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~-----~l~~~---Gll~~l~~aG~~i~~~gCg~CiG~~g~ 510 (903)
.-++.|++ +++.+..|+.++ +...+.|..+-++- .+-.+ =++.+++..+..=+.|-|..|.++..+
T Consensus 379 A~Sya~IF----frN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad 452 (502)
T KOG0454|consen 379 APSYARIF----FRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD 452 (502)
T ss_pred chhHHHHH----HHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch
Confidence 99986655 566788999887 44455555543332 12221 256778888887788999999998621
Q ss_pred CchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcc
Q psy9581 511 IKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGN 563 (903)
Q Consensus 511 l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~ 563 (903)
.+.. ....+ .+|+|+||||++|||.+..++|||||.+|+|+++.|+
T Consensus 453 ---~I~~-~~~ke---~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 453 ---GIFA-YARKE---GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred ---HHHH-hhccc---cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2222 22333 4799999999999999999999999999999999998
No 50
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.94 E-value=2.9e-27 Score=214.89 Aligned_cols=72 Identities=36% Similarity=0.567 Sum_probs=62.3
Q ss_pred eEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEc
Q psy9581 773 TIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLK 845 (903)
Q Consensus 773 ~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~ 845 (903)
+|||+|+|||||||||||+|+++++|+++|||+||++||++||+|+||||+++.+...++ ...+.+++++|+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vd 90 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVD 90 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEe
Confidence 599999999999999999999999999999999999999999999999999987654332 235566666665
No 51
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.93 E-value=2.6e-26 Score=272.84 Aligned_cols=165 Identities=20% Similarity=0.300 Sum_probs=125.5
Q ss_pred cccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCC
Q psy9581 661 NIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNN 740 (903)
Q Consensus 661 ~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~ 740 (903)
.|+ .+| +++||||+||||||+ +|+. .|+|.+...+..|.+.+
T Consensus 165 ~i~-g~V-~KvgdnInTD~I~Pa----------~~~~--------------~Rsdipl~a~~~~e~~~------------ 206 (835)
T PRK09238 165 KIT-VTV-FKVTGETNTDDLSPA----------PDAW--------------SRPDIPLHALAMLKNRR------------ 206 (835)
T ss_pred ccE-EEE-EEeCCCCchhccCCc----------cccc--------------cCCCHHHHHHHhccCCC------------
Confidence 454 476 899999999999998 5552 36788998888887432
Q ss_pred CccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhh-------------hhcCeeEEEecch
Q psy9581 741 TQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGT-------------KLLGVKMVIARSF 807 (903)
Q Consensus 741 ~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~-------------~~~Gv~aVIA~Sf 807 (903)
|+ +.+.++.++..| ..|+|+|+|||||||||||++++ +..| ++|||+||
T Consensus 207 -----------p~-----f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g-~~VIa~Sf 268 (835)
T PRK09238 207 -----------PG-----PIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAG-GVVLGGKI 268 (835)
T ss_pred -----------Cc-----HHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceE-EEEEeCch
Confidence 11 344444443333 25999999999999999999998 4445 99999999
Q ss_pred hHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHH
Q psy9581 808 ERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYY 887 (903)
Q Consensus 808 ~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~ 887 (903)
+|||++|++|+|+|||+++ ++ .++.||+++|+... | .| + ..+|+. .+.+.+.++.+++++
T Consensus 269 ArIFf~Nain~GlLpIe~d----~~--~i~~Gd~i~Id~~~-----g-~I--~--~~~g~~----~~~f~l~p~~~~div 328 (835)
T PRK09238 269 APIFFNTMEDSGALPIELD----VS--KLNMGDVIDIYPYK-----G-KI--R--NETGEV----IATFKLKTDVLLDEV 328 (835)
T ss_pred HHHHHhhhHHcCCceEEeC----HH--HcCCCCEEEEECCC-----C-EE--E--eCCCeE----EEEEecCcHHHHHHH
Confidence 9999999999999999996 22 36789999998643 3 22 2 244542 355677789999999
Q ss_pred HhcCcHHHHHHHhh
Q psy9581 888 QNDGILPFVLRELL 901 (903)
Q Consensus 888 ~aGGll~yv~~~~~ 901 (903)
++||++||++.|-+
T Consensus 329 ~AGGli~~i~gr~l 342 (835)
T PRK09238 329 RAGGRIPLIIGRGL 342 (835)
T ss_pred HcCChHHHHHhccc
Confidence 99999999987654
No 52
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.93 E-value=6.3e-27 Score=222.80 Aligned_cols=58 Identities=31% Similarity=0.479 Sum_probs=55.6
Q ss_pred CCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecC
Q psy9581 770 NISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827 (903)
Q Consensus 770 ~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~ 827 (903)
..++|||+|+|||||||||||+|+++.+||++|||+||+|||+||++|+|||+|++++
T Consensus 44 ~~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 44 KQGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred CCCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 3468999999999999999999999999999999999999999999999999999975
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.90 E-value=1.8e-24 Score=208.50 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=61.2
Q ss_pred eEEEecCCCCCCcchhhHHhhhh------------hcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCc
Q psy9581 773 TIIFAGKEYGTGSSRDWAAKGTK------------LLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNE 840 (903)
Q Consensus 773 ~iivag~nfG~GSSRe~A~~~~~------------~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e 840 (903)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||+||++|+|+||++++.. .+++||
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~~------~~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDVS------VLDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCHH------HcCCCC
Confidence 39999999999999999999998 779999999999999999999999999998722 267888
Q ss_pred EEEEcC
Q psy9581 841 YFDLKG 846 (903)
Q Consensus 841 ~i~i~~ 846 (903)
++++++
T Consensus 126 ~l~vD~ 131 (131)
T cd01576 126 ILNIDG 131 (131)
T ss_pred EEEeCC
Confidence 888763
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.88 E-value=4.3e-23 Score=244.89 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=120.4
Q ss_pred cccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCC
Q psy9581 661 NIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNN 740 (903)
Q Consensus 661 ~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~ 740 (903)
.|++ +| .++||+|+||+|||+ +|+.. |...+.+.+..|.+.+ +
T Consensus 166 ~i~g-~V-~k~gddinTD~i~Pa----------~~a~s--------------r~D~~~~a~~m~~~~~-------p---- 208 (844)
T TIGR00117 166 KITV-TV-FKVTGETNTDDLSPA----------PDAWT--------------RPDIPLHALAMLKNAR-------E---- 208 (844)
T ss_pred heEE-EE-EEeCCCCchhccCCh----------hhhhc--------------CCCHHHHHHHHhhcCC-------c----
Confidence 4544 64 599999999999997 88854 2445555555555321 1
Q ss_pred CccCCCceeecCCCchhhHHHHHHHhhhcCCce-EEEecCCCCCCcchhhHHhhh-------------hhcCeeEEEecc
Q psy9581 741 TQIEGGFTYYQPSGEKMSIYNAAMKYISNNIST-IIFAGKEYGTGSSRDWAAKGT-------------KLLGVKMVIARS 806 (903)
Q Consensus 741 ~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~-iivag~nfG~GSSRe~A~~~~-------------~~~Gv~aVIA~S 806 (903)
+|. +.....+ ..++ |+|+|+|||||||||||+.++ +.+| .+|||+|
T Consensus 209 -----~~~------------~~i~~~~--~~Gd~iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~s 268 (844)
T TIGR00117 209 -----GIE------------PQIEALK--QKGFPVAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGK 268 (844)
T ss_pred -----cHH------------HHHHHhc--cCCCeEEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEecc
Confidence 110 0011122 2345 999999999999999999999 9999 9999999
Q ss_pred hhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHH
Q psy9581 807 FERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKY 886 (903)
Q Consensus 807 f~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei 886 (903)
|+||||||++|.|+|||+++ .+ .++.||+++|+... |. | + +.+|+.. .++.+.|+..+++
T Consensus 269 fArIFfrnain~Gl~~ie~~----~~--~l~~GD~i~Id~~~-----G~-I--~--n~~g~~~----~~f~~~p~~l~di 328 (844)
T TIGR00117 269 IAPIFFNTMEDSGALPIEVD----VS--NLNMGDVIDIYPYK-----GE-I--T--NHEGELL----ATFELKPETLLDE 328 (844)
T ss_pred ChHhhhcchhhcCCCeEEeC----Hh--hcCCCCEEEEECCC-----CE-E--E--eCCCCEE----EEeeeCCHHHHHH
Confidence 99999999999999999986 11 37889999998533 42 2 2 2345542 4556778999999
Q ss_pred HHhcCcHHHHHHHh
Q psy9581 887 YQNDGILPFVLREL 900 (903)
Q Consensus 887 ~~aGGll~yv~~~~ 900 (903)
+++||+++|+.-|-
T Consensus 329 v~AGGli~~i~gr~ 342 (844)
T TIGR00117 329 VRAGGRIPLIIGRG 342 (844)
T ss_pred HHcCCchhhhhccc
Confidence 99999999998654
No 55
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.75 E-value=3.7e-18 Score=202.86 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=94.5
Q ss_pred HHhhhcCCceEEEecCCCCCCcchhhHHhhh-------------hhcCeeEEEecchhHHHhhhhccCccceEEecCccc
Q psy9581 764 MKYISNNISTIIFAGKEYGTGSSRDWAAKGT-------------KLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDS 830 (903)
Q Consensus 764 ~~y~~~~~~~iivag~nfG~GSSRe~A~~~~-------------~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~ 830 (903)
...|+.|. .|+|+|+|||||||||||+.++ +.+|+.+ ||+||+||||||++|.|+|||+++.
T Consensus 286 ~~lk~~g~-~iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~v--- 360 (938)
T PLN00094 286 EELKKKGH-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMDV--- 360 (938)
T ss_pred HHHHHcCC-ceEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEeccH---
Confidence 35566665 5889999999999999999999 9999999 9999999999999999999999861
Q ss_pred ccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHh
Q psy9581 831 IQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLREL 900 (903)
Q Consensus 831 ~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~ 900 (903)
+ .++.||.++|+... |. | + +.++|++. -.+.+.|+..++++++||+++|++-|-
T Consensus 361 -~--~i~~GD~I~id~~~-----G~-I--~-n~~~g~~~----~~f~~~p~~l~d~vrAGGli~~i~gr~ 414 (938)
T PLN00094 361 -K--NLNMGDVIDIYPYE-----GV-V--K-RHGTDEVI----TTFSLKTPVLLDEVRAGGRIPLIIGRG 414 (938)
T ss_pred -h--hcCCCCEEEEEcCC-----CE-E--E-ecCCCeEE----EeccCCChHHHHHHHcCCcHhhhhccc
Confidence 1 37889999998543 42 2 2 23456532 256778999999999999999998654
No 56
>PRK14812 hypothetical protein; Provisional
Probab=99.72 E-value=7e-18 Score=160.76 Aligned_cols=64 Identities=31% Similarity=0.367 Sum_probs=56.2
Q ss_pred CCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCccccccc-ccCCCcEEEEcCc
Q psy9581 783 TGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSL-NITGNEYFDLKGI 847 (903)
Q Consensus 783 ~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l-~l~~~e~i~i~~~ 847 (903)
||||||||+|+++.+||+||||+||++||++||+|+||||+.+++.. .+.| .++.+++++|+..
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~-~~~l~~~~~g~~i~vDL~ 66 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREV-REKLAQLKPTDQVTVDLE 66 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHH-HHHHhccCCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999987543 4433 4578899999853
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.48 E-value=4.2e-07 Score=92.88 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=96.2
Q ss_pred EEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCC
Q psy9581 667 ALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGG 746 (903)
Q Consensus 667 vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~ 746 (903)
+++++.+.++||++|||.. -| -|..++......+.+.+ ++
T Consensus 2 ~vfkV~GEtnTDdLSPa~d--------A~----------------SRpDiPLHA~aMl~~~~---------------~~- 41 (204)
T PF06434_consen 2 TVFKVPGETNTDDLSPAPD--------AW----------------SRPDIPLHALAMLKNRR---------------PG- 41 (204)
T ss_dssp EEEEEEEEEEHHHHS-GGG--------GG----------------GTTSHHHHHCCTT-S-B---------------TT-
T ss_pred eEEEeCCccccCcCCcccc--------cc----------------CCCCchHHHHHhccccc---------------cc-
Confidence 3677889999999999843 11 25556665544444321 11
Q ss_pred ceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCe------------eEEEecchhHHHhhh
Q psy9581 747 FTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGV------------KMVIARSFERIHRAN 814 (903)
Q Consensus 747 ~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv------------~aVIA~Sf~rI~~~N 814 (903)
. .+.-+..++.+.+.+.| |.--|.||||--|.-....... ..||...++.||+.-
T Consensus 42 --------~----l~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT 108 (204)
T PF06434_consen 42 --------P----LEQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNT 108 (204)
T ss_dssp --------S----HHHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHH
T ss_pred --------H----HHHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEecc
Confidence 1 12234566777765555 7779999999999876644332 268888999999999
Q ss_pred hccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHH
Q psy9581 815 LIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILP 894 (903)
Q Consensus 815 ~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~ 894 (903)
+---|-||++++- . .+..||.|+|.-.. |+ +...+|+...+|+ +-++...+-++|||-++
T Consensus 109 ~edsGaLPIe~dv----~--~l~~Gdvi~I~p~~-----gk-----i~~~~gev~~~f~----l~p~~l~DevrAGGri~ 168 (204)
T PF06434_consen 109 AEDSGALPIECDV----S--SLNTGDVITIYPYE-----GK-----IYKENGEVISTFE----LKPQTLLDEVRAGGRIP 168 (204)
T ss_dssp HHHTT-EEEE-------T--T--TT-EEEEETTT-----TE-----EEETT--EEEE-------S-TCHHHHHHHTSHHH
T ss_pred ccccCCceEEEec----c--ccCCCcEEEEecCC-----cE-----EECCCCCEEEEee----cCchhHHHHHhcCCcEE
Confidence 9999999999852 2 36789999998543 42 2335676542344 34567789999999999
Q ss_pred HHHHHhh
Q psy9581 895 FVLRELL 901 (903)
Q Consensus 895 yv~~~~~ 901 (903)
.+.-|-+
T Consensus 169 LiiGR~L 175 (204)
T PF06434_consen 169 LIIGRGL 175 (204)
T ss_dssp HHHHHHH
T ss_pred EEechHH
Confidence 9876543
No 58
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=96.23 E-value=0.012 Score=67.77 Aligned_cols=71 Identities=31% Similarity=0.405 Sum_probs=62.6
Q ss_pred cCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCc
Q psy9581 424 NGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCA 502 (903)
Q Consensus 424 ~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg 502 (903)
+.++|.++|| |=--|++.++..|++| +|+|+++.+++.|. -|+.|+..+.+.|+.+.|+++|+.|+.-.|.
T Consensus 287 ~~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC~ 357 (400)
T PF04412_consen 287 DEKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTCM 357 (400)
T ss_pred CCCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEccccc
Confidence 3467888886 8888999999999999 89999999988877 6799999999999999999999999976653
No 59
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=96.16 E-value=0.0066 Score=71.34 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=77.1
Q ss_pred HHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCe------------eEEEecchhHHHhhhhccCccceEEecCcccc
Q psy9581 764 MKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGV------------KMVIARSFERIHRANLIGMGILPLQFLNNDSI 831 (903)
Q Consensus 764 ~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv------------~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~ 831 (903)
+..++.|.+.+. .|.--|.||||--|.-.....+. ..|+..-.+.||+.-+---|-||++++-.
T Consensus 215 ~~lk~Kg~~vay-vgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv~--- 290 (852)
T COG1049 215 EALKQKGHPVAY-VGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDVS--- 290 (852)
T ss_pred HHHhhcCceEEE-eccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeeec---
Confidence 345566665444 45569999999888654322221 24455566899999999999999998532
Q ss_pred cccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHH
Q psy9581 832 QSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLR 898 (903)
Q Consensus 832 ~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~ 898 (903)
.+.-|+.|+|.--. |+ + + .+++|+.+ ..+..-|+..++-+++||-++.+.-
T Consensus 291 ---~l~~Gdvi~i~py~-----gk-i--~-~~~~ge~v----~~f~lkt~~lldevrAGgripliiG 341 (852)
T COG1049 291 ---NLEMGDVIDIYPYE-----GK-I--R-NNNTGEVV----ATFSLKTDVLLDEVRAGGRIPLIIG 341 (852)
T ss_pred ---cccccceEEeeccC-----Ce-e--e-ccCCCcEE----EEeecCchhHHHHHhcCCceeEEEc
Confidence 36779999998533 42 2 2 23346654 3344468999999999998887653
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=94.58 E-value=0.081 Score=59.91 Aligned_cols=70 Identities=30% Similarity=0.390 Sum_probs=60.2
Q ss_pred cCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCC
Q psy9581 424 NGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGC 501 (903)
Q Consensus 424 ~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gC 501 (903)
++.+|..+|| |---|.+.++..|.+| +|++-++.+.++|+ -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 287 ~~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 287 DGEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 4467778887 7778999999999998 88888888887766 689999999999999999999999997654
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=92.57 E-value=0.28 Score=56.57 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=58.5
Q ss_pred cEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCcccc
Q psy9581 426 DILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCI 505 (903)
Q Consensus 426 ~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~Ci 505 (903)
++|+++| +|=--|.+.++.-|++| +|+++++.++++|. -|+.|+ +.+.|+.+.++++|+.|+.-.|. |+
T Consensus 278 ~~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v 346 (389)
T cd01355 278 EPDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VV 346 (389)
T ss_pred CCCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-ee
Confidence 4677888 58888999999999999 89877777776665 567777 99999999999999999997777 66
Q ss_pred C
Q psy9581 506 G 506 (903)
Q Consensus 506 G 506 (903)
-
T Consensus 347 ~ 347 (389)
T cd01355 347 S 347 (389)
T ss_pred e
Confidence 4
No 62
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.12 E-value=39 Score=33.49 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=27.3
Q ss_pred eeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEEE
Q psy9581 309 TIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITL 362 (903)
Q Consensus 309 t~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~viei 362 (903)
.+|+||..+..++|.+.+. +. +...+ .|.-||.+...||....+
T Consensus 61 ~~GvF~seqA~~dw~~~~~--~~----~~~~~----~~~~pdg~~rry~~~~n~ 104 (127)
T PF06163_consen 61 RSGVFPSEQARKDWDKARK--KL----VDPDL----IWKLPDGEIRRYDRRQNI 104 (127)
T ss_pred CccccccHHHHHHHHHhHH--hh----ccchh----hhhCCCccccccccccch
Confidence 3699999999999987632 11 11010 244477766558876554
No 63
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=23.37 E-value=37 Score=33.84 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.9
Q ss_pred eEEEecCCCCCcCccccCCCCCCcChhhhhhhh
Q psy9581 666 RALCILGDSITTDHISPAGLIEESSPAGKWLIN 698 (903)
Q Consensus 666 ~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~ 698 (903)
.......+++|||.|+|+ +||..
T Consensus 10 ~~~~~~~s~idtd~i~p~----------~~~~~ 32 (131)
T PF00694_consen 10 VAVPDFNSNIDTDQIIPA----------MFLGT 32 (131)
T ss_dssp EEEEEHHSTGGGHHHSCG----------GHHHS
T ss_pred ccccccccccccccccHH----------HHhcc
Confidence 567788999999999997 88875
No 64
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=21.53 E-value=80 Score=28.99 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=25.1
Q ss_pred EeeccCCCCchHHHHHHHHHHHHHHhCCCccC
Q psy9581 431 AITSCTNTSNPNLMLSAGLLAKKAVKFGLEIS 462 (903)
Q Consensus 431 ~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~ 462 (903)
+|+||..|.-.- .+||+.|.+.|-+.|.++.
T Consensus 2 ~vtacp~G~Aht-~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHT-FMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 589999987765 4578888899988998776
No 65
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=20.85 E-value=1e+02 Score=30.44 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=24.5
Q ss_pred CEEeccCCccccCCCCCCchhHHHHHh---cCCceEEEEecCCCCC
Q psy9581 494 FNIVAYGCATCIGNSGKIKSQIEEIII---NNNIITSSILSGNRNF 536 (903)
Q Consensus 494 ~~i~~~gCg~CiG~~g~l~~~~~~~i~---~~e~~~~~vsS~NRNF 536 (903)
|.++.|.=+..-+ .+.++..+.+.|. ....+.-.+.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4444444333333 3447888888887 4455555678999999
Done!