Query psy9581
Match_columns 903
No_of_seqs 368 out of 2682
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:20:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 2E-239 6E-244 2110.3 67.7 878 4-902 3-888 (888)
2 1c96_A Mitochondrial aconitase 100.0 4E-177 1E-181 1560.5 63.0 713 43-900 35-751 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 6E-100 2E-104 904.6 37.5 409 44-565 383-821 (865)
4 2pkp_A Homoaconitase small sub 100.0 1.6E-36 5.5E-41 304.3 13.3 156 666-901 6-161 (170)
5 1v7l_A 3-isopropylmalate dehyd 100.0 4.1E-36 1.4E-40 299.3 11.5 154 666-901 6-159 (163)
6 1l5j_A Aconitate hydratase 2; 100.0 1.5E-37 5.1E-42 370.4 0.4 280 535-901 48-353 (865)
7 2hcu_A 3-isopropylmalate dehyd 100.0 1E-35 3.5E-40 306.8 10.4 179 645-890 5-187 (213)
8 3vba_A Isopropylmalate/citrama 100.0 6.2E-35 2.1E-39 293.1 14.3 160 665-902 7-166 (176)
9 3q3w_A 3-isopropylmalate dehyd 100.0 1.4E-32 4.9E-37 280.8 9.1 162 661-890 9-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 100.0 1.2E-31 4E-36 267.3 9.9 157 661-890 9-169 (171)
11 2r4q_A Phosphotransferase syst 34.9 31 0.0011 31.8 3.9 33 429-462 5-37 (106)
12 2r48_A Phosphotransferase syst 34.6 32 0.0011 31.7 4.0 33 429-462 5-37 (106)
13 2kyr_A Fructose-like phosphotr 25.1 39 0.0014 31.4 2.8 33 429-462 8-40 (111)
14 2m1z_A LMO0427 protein; homolo 23.8 51 0.0017 30.4 3.3 33 429-462 5-37 (106)
15 3ugu_A S-arrestin; arrestin fo 22.0 1.1E+02 0.0036 34.3 5.9 31 796-826 156-190 (380)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=1.7e-239 Score=2110.33 Aligned_cols=878 Identities=48% Similarity=0.847 Sum_probs=827.1
Q ss_pred ccccc-ceEeccCCceEEEEeccchhhhcCCCCCCCcHHHHHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEE
Q psy9581 4 KKTIL-KEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLI 82 (903)
Q Consensus 4 ~~~~~-~~~~~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~ 82 (903)
+|..+ ++|.. +|+.|+||+|+++++. .+++||||||||+||+||+++|..+++++|+++++|.++.++|.+|.++
T Consensus 3 ~~~~~~~~l~~-~~~~~~~~~l~~~~~~---~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 78 (888)
T 2b3y_A 3 PFAHLAEPLDP-VQPGKKFFNLNKLEDS---RYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFK 78 (888)
T ss_dssp TTGGGEEESCT-TSTTCEEECGGGGCCT---TGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEEC
T ss_pred chhhhhcccCC-CCceeEEEEhHHcccc---chhhCCchHHHHHHHHHhccCCcchhHHHHHHHhcccccCCCCCEEEEe
Confidence 35555 56776 6789999999999742 5799999999999999999999999999999999998888899999999
Q ss_pred eeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCeEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHH
Q psy9581 83 VTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKW 162 (903)
Q Consensus 83 pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~ 162 (903)
|||||+||+||+||++||++||++++++|+||+++||.+||++|+||++|++.++..++..+|+.++|+||.|+|+||||
T Consensus 79 pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w 158 (888)
T 2b3y_A 79 PARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 158 (888)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HhhhcCcccccCCCCcccceeeccccccceecccccccCCeEEecCCCCCcccccceeeccCChHHHHHHHccCceeeec
Q psy9581 163 GMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLI 242 (903)
Q Consensus 163 ~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~v 242 (903)
++++|++|+++|||+||||||++|+||++||.++|+++|||||||||||||+||||+|||||||+|++++|+||++||++
T Consensus 159 ~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~ 238 (888)
T 2b3y_A 159 GSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVL 238 (888)
T ss_dssp HHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEEC
T ss_pred HHHhccCCCCCCCCCCCcceehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEEEEecCcccCCCcccchhhccccccccceeeeecCCHHHHHH
Q psy9581 243 PDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNY 322 (903)
Q Consensus 243 Pevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~Y 322 (903)
||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+|+||+|++|++|
T Consensus 239 PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~Y 318 (888)
T 2b3y_A 239 PQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITY 318 (888)
T ss_dssp CCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHH
T ss_pred CCEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHhcccccC--CC-cCccccceEEEEECCCcccccccCCCCCCeeeccccchhhHHhhccccc
Q psy9581 323 FYNTGRNNLEIKAFESYFKSQKLFGI--PK-IGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTF 399 (903)
Q Consensus 323 L~~~gR~~~~~~~~~~y~~~~~l~~~--~d-~~a~~Y~~vieiDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~ 399 (903)
|+.|||++++++++++|.+++++|++ +| ++|. |+++++||||+|||+||||++||+++||+++..+|.+++....+
T Consensus 319 L~~~gr~~~~~~~~e~y~~a~~l~~~l~~d~~dA~-Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g 397 (888)
T 2b3y_A 319 LVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPD-FTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQG 397 (888)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCC-CSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSB
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHhccCCCCCCCc-eEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhcccc
Confidence 99999999889999999999999987 45 8999 99999999999999999999999999999999988876644211
Q ss_pred cCCCccc-ccc--ccceeccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHH
Q psy9581 400 KNGFNKD-INE--LNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVV 476 (903)
Q Consensus 400 ~~~~~~~-~~~--~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V 476 (903)
.+++... ..+ ..+++++|...+|.||+|++|||||||||||||+|+||++|||+|+++|+||+||||++|+|||++|
T Consensus 398 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V 477 (888)
T 2b3y_A 398 FKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVV 477 (888)
T ss_dssp TTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHH
T ss_pred cccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHH
Confidence 1111000 000 0124567766789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHH
Q psy9581 477 TEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVI 556 (903)
Q Consensus 477 ~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~va 556 (903)
++||+++||+++|+++||.|++|||++||||+++++++++++|.+||+++++|||+||||+||||+..+++|||||+|||
T Consensus 478 ~~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lva 557 (888)
T 2b3y_A 478 TYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVI 557 (888)
T ss_dssp HHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHH
T ss_pred HHHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHhhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhhccCcchhhhcccccCCCCCCCcccccccccCccccC
Q psy9581 557 AYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW 636 (903)
Q Consensus 557 A~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w 636 (903)
||||+|+|++|+++||++++++|++|||+||||+.+||++.+...+++++|.+.|+.++.+++. |+.++. +++++|+|
T Consensus 558 A~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~-~~~~~~-~~~~~~~w 635 (888)
T 2b3y_A 558 AYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNES-WNALAT-PSDKLFFW 635 (888)
T ss_dssp HHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHH-HHHCCC-CCCSSCCC
T ss_pred HHHhcCeeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccc-cccCCC-CCCCcccc
Confidence 9999999999999999999999999999999999999999998899999999999999999888 999998 88999999
Q ss_pred -CCccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCC
Q psy9581 637 -PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGN 715 (903)
Q Consensus 637 -~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN 715 (903)
|+||||++||||+++...|+++ +++.++++|+++|||||||||||||+|+++||||+||+++|+++++|||||+||||
T Consensus 636 ~~~St~i~~~p~f~~~~~~~~~~-~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn 714 (888)
T 2b3y_A 636 NSKSTYIKSPPFFENLTLDLQPP-KSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGN 714 (888)
T ss_dssp CTTCSSCCCCGGGTTCCSSCCCC-CCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTC
T ss_pred CCCcccccCCCCccccccCCCCc-ccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccC
Confidence 9999999999999998888887 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhh
Q psy9581 716 HEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTK 795 (903)
Q Consensus 716 ~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~ 795 (903)
||||+||+|+|+|++|+|+ +.+|++|+++|+|+.+++||+|++|++.|.++|||||+|||||||||||+|+++
T Consensus 715 ~~vm~rg~F~n~r~~n~l~-------~~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~ 787 (888)
T 2b3y_A 715 DAVMARGTFANIRLLNRFL-------NKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPF 787 (888)
T ss_dssp HHHHHHTTTCCTTCEETTT-------TEECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHH
T ss_pred HHHHhhhcccccccccccc-------cccCCceeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHH
Confidence 9999999999999999988 468999999999999999999999999999999999999999999999999999
Q ss_pred hcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEE
Q psy9581 796 LLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLL 875 (903)
Q Consensus 796 ~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~ 875 (903)
++||+||||+||+|||++||+|||||||+|++..+++.++++++|+++|+ +.+.++||+.+++++ .+|+ +|++.
T Consensus 788 ~~Gi~aVIA~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~-l~~~~~~g~~v~v~~--~~G~---~~~~~ 861 (888)
T 2b3y_A 788 LLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTII-IPENLKPQMKVQVKL--DTGK---TFQAV 861 (888)
T ss_dssp HTTEEEEEESCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEEC-CCSSCCTTCEEEEEE--TTSC---EEEEE
T ss_pred HcCeeEEEEhhHHHHHHhhhhhcCCceEeecccccHHHhccCCCceEEEE-cccccCCCcEEEEEe--CCCe---EEEEE
Confidence 99999999999999999999999999999999888888889999999998 443589998887765 6675 67888
Q ss_pred eecCCHHHHHHHHhcCcHHHHHHHhhc
Q psy9581 876 LRIDTPMEIKYYQNDGILPFVLRELLN 902 (903)
Q Consensus 876 ~~~~t~~e~ei~~aGGll~yv~~~~~~ 902 (903)
++++|+.|++|+++||+|||+++++++
T Consensus 862 ~~~~t~~e~~~~~aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 862 MRFDTDVELTYFLNGGILNYMIRKMAK 888 (888)
T ss_dssp ECCCSHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 899999999999999999999999864
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=3.7e-177 Score=1560.47 Aligned_cols=713 Identities=28% Similarity=0.405 Sum_probs=617.7
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCC
Q psy9581 43 RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVP 122 (903)
Q Consensus 43 ril~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~ 122 (903)
++|.||||..+.+..- .. .-..+|++|.++||||++||+|||+|+++|+++ |.++ |..|
T Consensus 35 ~Tl~eKIl~~H~~~~~-~~---------~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~-------G~~~----v~~P 93 (753)
T 1c96_A 35 LTLSEKIVYGHLDDPA-NQ---------EIERGKTYLRLRPDRVAMQDATAQMAMLQFISS-------GLPK----VAVP 93 (753)
T ss_dssp CCHHHHHHHTTBSCTT-TC---------CCCTTTCEEEECCSEEEEETTTHHHHHHHHHHH-------TCSS----CSSC
T ss_pred CCHHHHHHHHHhCCcc-cc---------cccCCCCEEEEEccEEEEeccccHHHHHHHHHh-------CCCC----CCCC
Confidence 4778888866543210 00 002467899999999999999999999998653 7664 2356
Q ss_pred eEEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCC
Q psy9581 123 VDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD 202 (903)
Q Consensus 123 v~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~ 202 (903)
..+++||++|++..+. .++..++.+|.++|+||+|++++| ||+|+|||+||||||++|+ +++|+
T Consensus 94 ~~~~~DH~v~~~~~~~-----~d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg 157 (753)
T 1c96_A 94 STIHCDHLIEAQLGGE-----KDLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPG 157 (753)
T ss_dssp EEEECCSSCCBSSCHH-----HHHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTT
T ss_pred CceecCCCCCCCCCcc-----cchhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEeccc----------ccCCC
Confidence 7899999999986542 235678899999999999999999 9999999999999999998 78896
Q ss_pred -eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhhcCccceEE
Q psy9581 203 -IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFV 281 (903)
Q Consensus 203 -~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~~g~~gk~v 281 (903)
++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|
T Consensus 158 ~~ivGtDSHT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~v 237 (753)
T 1c96_A 158 VLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIV 237 (753)
T ss_dssp CEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEE
T ss_pred cEEecCCCCCCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCcccchhhccccccccceeeeecCCHHHHHHHhccCCChhhHHHHHHHHHhcccccCCCcCccccceEEE
Q psy9581 282 EFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIIT 361 (903)
Q Consensus 282 Ef~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D~~t~~YL~~~gR~~~~~~~~~~y~~~~~l~~~~d~~a~~Y~~vie 361 (903)
||+||||++||+++|||||||++|+|||+|+||+|++|++||+.|+|.+ .++++++|.+ +|+ +|++|. |+++++
T Consensus 238 Ef~G~gv~~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l~-~D~~A~-Yd~~ie 311 (753)
T 1c96_A 238 EYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HLV-PDPGCH-YDQVIE 311 (753)
T ss_dssp EEESGGGGGSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GSS-CCTTCC-CSEEEE
T ss_pred EEECCccccCCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---hcc-CCCCCc-eeEEEE
Confidence 9999999999999999999999999999999999999999999999977 6778888865 343 789999 999999
Q ss_pred EECCCcccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccceeccCCceeeecCcEEEEEeeccCCCCch
Q psy9581 362 LNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNP 441 (903)
Q Consensus 362 iDLs~veP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~~a~IgSCTN~s~~ 441 (903)
||||+|+|+||+|++|||++||+++.+.+++. ++ + -+|++||||||||||+|
T Consensus 312 iDls~leP~va~P~~P~~~~~v~e~~~~~~~~--------~~-----------------~---~~Vd~~~IGSCTN~~~~ 363 (753)
T 1c96_A 312 INLSELKPHINGPFTPDLAHPVAEVGSVAEKE--------GW-----------------P---LDIRVGLIGSCTNSSYE 363 (753)
T ss_dssp EEGGGCCCEEECSSSTTCEEEHHHHHHHHHHH--------TC-----------------C---CBEEEEEEBTTTBCSHH
T ss_pred EEccccceeecCCCCCcceeEhHHhhhhHhhc--------CC-----------------c---cceEEEEEecCCCCCHH
Confidence 99999999999999999999999998754430 11 1 26899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcCCEEeccCCccccCCCCCCchhHHHHHhc
Q psy9581 442 NLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIIN 521 (903)
Q Consensus 442 dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~ 521 (903)
||+.||. |+|+|+++| ++++||++|+|||++|++||+++||+++|++|||.|++|||++|+|++++.. +..
T Consensus 364 Dl~~AA~-ilkga~~~~--v~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~------~~~ 434 (753)
T 1c96_A 364 DMGRSAA-VAKQALAHG--LKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD------IKK 434 (753)
T ss_dssp HHHHHHH-HHHHHHTTT--CCCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS------SCT
T ss_pred HHHHHHH-HhccHhhcC--CCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCcc------ccc
Confidence 9776665 557777766 5666999999999999999999999999999999999999999999997632 112
Q ss_pred CCceEEEEecCCCCCCCCc-CCCCCceEecCHHHHHHHHhhccccccCCCCCcccCCCCCeeecCCCCCChhhhhhhhhh
Q psy9581 522 NNIITSSILSGNRNFESRI-HPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKF 600 (903)
Q Consensus 522 ~e~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~d~wP~~~ei~~~~~~ 600 (903)
++. .+||||+||||+||| |++.+.+|||||+|||||||+|+|++|+++||| .+++|++|||+| |+.+|+++
T Consensus 435 ~~~-~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~---- 506 (753)
T 1c96_A 435 GEK-NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR---- 506 (753)
T ss_dssp TCC-EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS----
T ss_pred CCc-ceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCCCeeeecC--Cccchhhh----
Confidence 222 268999999999999 456678999999999999999999999999999 889999999999 98888864
Q ss_pred ccCcchhhhcccccCCCCCCCccccccccc-CccccC-CCccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcC
Q psy9581 601 TLNKNLFYFNYKNIKNNPGKLWSNISDTVI-DNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTD 678 (903)
Q Consensus 601 ~~~~~~f~~~~~~~~~~~~~~w~~~~~~~~-~~~~~w-~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTD 678 (903)
++|. .++.. |+.+.. +. +..|.| |+||||+.||||+++ +. .++.++++|+++||+||||
T Consensus 507 ----~~f~-------~~~~~-~~~~~~-~~~~~~~~~~p~s~~~~~~~~f~~~-----~~-~~~~~~~vL~klgd~iTTD 567 (753)
T 1c96_A 507 ----AEFD-------PGQDT-YQHPPK-DSSGQRVAVSPTSQRLQLLEPFDKW-----DG-KDLEDLQILIKVKGKCTTD 567 (753)
T ss_dssp ----SCCC-------CCSCC-EECCCS-CCTTCCCCCCTTCSSBCCCCCCCCC-----CS-SCEEEEEEEEEBCSCCBHH
T ss_pred ----hhcc-------CCccc-cccCCC-CCCcceEeeCCCCccccCCCCCCCC-----Cc-cccccceEEEeccCCcccc
Confidence 2232 23344 877655 43 678999 999999999998754 33 5889999999999999999
Q ss_pred ccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhh
Q psy9581 679 HISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMS 758 (903)
Q Consensus 679 hIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~ 758 (903)
|||||| +||++ ||+|+|++ .|.|. ...+..+.+.++++|.|+|++++
T Consensus 568 hIsPAG---------~~L~~----------------------rg~f~ni~-~n~l~-~~~~~~~g~~~~~~~~~~~~~~~ 614 (753)
T 1c96_A 568 HISAAG---------PWLKF----------------------RGHLDNIS-NNLLI-GAINIENRKANSVRNAVTQEFGP 614 (753)
T ss_dssp HHBCCG---------GGGGG----------------------TBCHHHHG-GGBTT-TSBBTTTCCBSCEECTTTCCEEC
T ss_pred cccccc---------hhhcc----------------------ccchhhhh-hhhcc-ccccccCCCcceeEEecCCcccc
Confidence 999984 88976 56888887 56655 21111122446999999999999
Q ss_pred HHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEecCcccccccccCC
Q psy9581 759 IYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITG 838 (903)
Q Consensus 759 i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l~l~~ 838 (903)
+||+|++|++.+.++|||||+|||||||||||+|+++++||+||||+||+||||+||+|||||||+|++.++++ ++++
T Consensus 615 ~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~--~l~~ 692 (753)
T 1c96_A 615 VPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHP 692 (753)
T ss_dssp HHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGG--GCCT
T ss_pred cHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCCcceeecCcchhh--hcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877777 4789
Q ss_pred CcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHh
Q psy9581 839 NEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLREL 900 (903)
Q Consensus 839 ~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~ 900 (903)
+|+|+|+++. ++.||..+++++++.+|+.+ +|++.++ +|+.|++||++||||||++++.
T Consensus 693 gd~i~I~gl~-~l~~g~~v~~~i~~~~g~~~-~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 693 VDKLTIQGLK-DFAPGKPLKCIIKHPNGTQE-TILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp TCEEEEECGG-GCCTTCCEEEEEECTTSCEE-EEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred CCEEEEcChH-HcCCCceEEEEEEecCCcEE-EEEEeCC-CCHHHHHHHHcCCHHHHHHHhh
Confidence 9999999876 68899888888888888877 8888888 6999999999999999999864
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=5.8e-100 Score=904.63 Aligned_cols=409 Identities=21% Similarity=0.273 Sum_probs=352.4
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHhccCCCCCCCceeeEEeeEEEeecCCcHHHHHHHHHHHHHHHHcCCCCCccCCCCCe
Q psy9581 44 IILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPV 123 (903)
Q Consensus 44 il~E~ilr~~~g~~v~~~~i~~l~~w~~~~~~g~~v~~~pdrvl~qD~Tg~~a~~dlaamr~~~~~~g~dp~~v~p~~~v 123 (903)
+|.||||.++.|.. ..++|++|.++||||++||+||+|++.+ ++++|.+ .++|+ .+
T Consensus 383 TlaEKIl~~~~g~~--------------~v~~G~~v~~~~D~v~~qD~Tg~~~~~~-------~~~lg~~--~~~~d-~v 438 (865)
T 1l5j_A 383 SLAQKMVGRACGVK--------------GIRPGAYCEPKMTSVGSQDTTGPMTRDE-------LKDLACL--GFSAD-LV 438 (865)
T ss_dssp CHHHHHHHHTTTSS--------------CCCTTCEECCBCSEEEECTTTHHHHHHH-------HHHTTCC--SCCSS-CE
T ss_pred cHHHHHHHHHhCCC--------------ccCCCCEEEEEeeEEEEeccCcHHHHHH-------HHHcCCC--cCCCC-eE
Confidence 45666666655532 2588999999999999999999997654 4455643 55555 34
Q ss_pred EEEecccCccCcccccchHHHHHHHHHHHhhhhhhhHHHHhhhcCcccccCCCCcccceeeccccccceecccccccCC-
Q psy9581 124 DLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD- 202 (903)
Q Consensus 124 ~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~flk~~~~~f~~~~~~~pg~GI~HqV~~E~la~~~~~~~g~~~P~- 202 (903)
..++||.++.+. |...++.||.++|.|.+| +.++|||+|||||++.| +++|+
T Consensus 439 v~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g-------~~~~~pg~GI~Hq~l~~-----------~~~PG~ 491 (865)
T 1l5j_A 439 MQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRG-------GVSLRPGDGVIHSWLNR-----------MLLPDT 491 (865)
T ss_dssp EECCCSSSSSCC---------HHHHHHHHHHHHHHHTTT-------CEECCTTSBCHHHHHGG-----------GCCTTC
T ss_pred EEECCCCCcCCC---------HHHHHHHHHHHHHHHHcC-------CeEeCCCCceeeeeecc-----------cccccc
Confidence 667999888653 455677788887766554 45699999999998654 68896
Q ss_pred eEEecCCCCCcccccceeeccCChHHHHHHHccCceeeecCceeeEEEEcccCCCCChhhHHHHHHHHhhh---------
Q psy9581 203 IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRK--------- 273 (903)
Q Consensus 203 ~vvGtDSHT~~~GalG~la~GvGg~e~~~am~g~~~~~~vPevv~V~l~G~L~~gVtakDviL~i~~~L~~--------- 273 (903)
++|||||||||+||+ |+|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|||||+|++.+.+
T Consensus 492 ~ivGtDSHT~~~~Gl---g~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~ 568 (865)
T 1l5j_A 492 VGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKK 568 (865)
T ss_dssp EEEESSTTCCCSSSE---ECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCST
T ss_pred eEEeCCCCccccccc---eeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhccccccccc
Confidence 569999999999975 56789999999999999999999999999999999999999999999876542
Q ss_pred ---cCccceEEEEecCcccCCCcccchhhccccccccceeeeecCC-HHHHHHHhc----------cCCC-----hhhHH
Q psy9581 274 ---KNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVD-KITVNYFYN----------TGRN-----NLEIK 334 (903)
Q Consensus 274 ---~g~~gk~vEf~G~gv~~Lsv~~R~TI~NMa~E~GAt~g~fp~D-~~t~~YL~~----------~gR~-----~~~~~ 334 (903)
++++||+||| +||++||+++|||||||++|+|||+|+||+| ++|++||+. +||. .++++
T Consensus 569 g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~ 646 (865)
T 1l5j_A 569 GKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQ 646 (865)
T ss_dssp TCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CcccceeeEEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchhHHHHHH
Confidence 3448999999 5799999999999999999999999999976 788999998 6864 34567
Q ss_pred HHHHHHHhcccccCCCcCccccceEEEEECCCc-ccccccCCCCCCeeeccccchhhHHhhccccccCCCccccccccce
Q psy9581 335 AFESYFKSQKLFGIPKIGEIDYTDIITLNLDNV-SPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKI 413 (903)
Q Consensus 335 ~~~~y~~~~~l~~~~d~~a~~Y~~vieiDLs~v-eP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (903)
.+++|.+++++|+ +|++|. |+++++||||+| ||+||+|++|||++|++++.+.
T Consensus 647 ~~~~~~~~~~~l~-~D~dA~-Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~------------------------ 700 (865)
T 1l5j_A 647 GMEKWLANPELLE-ADADAE-YAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE------------------------ 700 (865)
T ss_dssp HHHHHHHSCCCCC-CCTTCC-CSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC------------------------
T ss_pred HHHHHHhccceec-cCCCCc-EEEEEEEEcccCCCCEecCCCChHhccchhhhccc------------------------
Confidence 7889999888886 789999 999999999999 8999999999999999998651
Q ss_pred eccCCceeeecCcEEEEEeeccCCCCchHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHCCchHHHHhcC
Q psy9581 414 YITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLG 493 (903)
Q Consensus 414 ~~~~~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~~~Vk~~v~PgS~~V~~~l~~~Gll~~l~~aG 493 (903)
+|+++|||||||+ ++||+.||.+| ||++++++||++|+|||++|+++|+++|++++|.++|
T Consensus 701 ------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aG 761 (865)
T 1l5j_A 701 ------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSG 761 (865)
T ss_dssp ------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHT
T ss_pred ------------ccceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcC
Confidence 3567999999877 99999999988 8889999999999999999999999999999999999
Q ss_pred CEEeccCCccccCCCCCCchhHHHHHhcCCceEEEEecCCCCCCCCcCCCCCceEecCHHHHHHHHhhcccc
Q psy9581 494 FNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL 565 (903)
Q Consensus 494 ~~i~~~gCg~CiG~~g~l~~~~~~~i~~~e~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 565 (903)
|+|.+||||+|+||++.+ .+|+ +++||+||||+||||+ .+.+|||||++||||||+|+|+
T Consensus 762 a~v~~pgCg~CiGn~~~~--------~~ge---~~isTsNRNF~GR~G~-~~~~yLaSP~~vAAsAiaG~i~ 821 (865)
T 1l5j_A 762 ARIEIPGCSLCMGNQARV--------ADGA---TVVSTSTRNFPNRLGT-GANVFLASAELAAVAALIGKLP 821 (865)
T ss_dssp CEECCSSCGGGTCSSSCC--------CTTC---EEEESSSCCCTTSSST-TCEEEECCHHHHHHHHHHSBCC
T ss_pred CEEcCCccccccCcCCcC--------CCCC---EEEecCCcCCCCCCCC-CcceEECCHHHHHHHHhCCcCC
Confidence 999999999999998654 3567 5789999999999995 5689999999999999999995
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.6e-36 Score=304.30 Aligned_cols=156 Identities=26% Similarity=0.415 Sum_probs=125.9
Q ss_pred eEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCC
Q psy9581 666 RALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEG 745 (903)
Q Consensus 666 ~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g 745 (903)
+ ++++|||||||||+|| +||+ |.|.+.+.+++|.++| +
T Consensus 6 ~-v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-------p--------- 43 (170)
T 2pkp_A 6 R-AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID-------E--------- 43 (170)
T ss_dssp E-EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-------T---------
T ss_pred E-EEECCCCCChhhcChH----------HHhC---------------CCCHHHHHHHhcccCC-------C---------
Confidence 5 6789999999999997 8884 4466677788898664 1
Q ss_pred CceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEe
Q psy9581 746 GFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQF 825 (903)
Q Consensus 746 ~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~ 825 (903)
+|. .+++ .++|||||+|||||||||||+|+++++|++||||+||+||||+||+|||||||+|
T Consensus 44 ~f~---------------~~~~---~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~ 105 (170)
T 2pkp_A 44 NFP---------------KKVK---EGDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIA 105 (170)
T ss_dssp THH---------------HHCC---TTCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEEC
T ss_pred chH---------------HhCC---CCCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEe
Confidence 121 2333 3589999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHhh
Q psy9581 826 LNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901 (903)
Q Consensus 826 ~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~~ 901 (903)
+ ++ .++++|+++|+. .++ +| + ...+|++ |+ ++.+++.+++++++||+|||++++++
T Consensus 106 ~----~~--~l~~gd~i~idl-----~~~-~v--~-~~~~g~~---~~--~~~~~~~~~~~l~aGGll~~~~~~~~ 161 (170)
T 2pkp_A 106 N----TD--EIKDGDIVEIDL-----DKE-EI--V-ITNKNKT---IK--CETPKGLEREILAAGGLVNYLKKRKL 161 (170)
T ss_dssp C----GG--GCCTTCEEEEET-----TTT-EE--E-EGGGTEE---EE--CBCCCHHHHHHHHTTSHHHHHHHHHH
T ss_pred c----HH--HcCCCcEEEEEC-----CCC-EE--E-ECCCCeE---EE--EEeCCHHHHHHHHcCCHHHHHHHHHH
Confidence 7 33 478999999984 335 23 2 2346753 33 35679999999999999999999875
No 5
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=4.1e-36 Score=299.30 Aligned_cols=154 Identities=27% Similarity=0.397 Sum_probs=123.8
Q ss_pred eEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCC
Q psy9581 666 RALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEG 745 (903)
Q Consensus 666 ~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g 745 (903)
+ ++++|||||||||+|| +||+ |+|.+.+.+++|.++| +
T Consensus 6 ~-~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-------p--------- 43 (163)
T 1v7l_A 6 K-VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-------P--------- 43 (163)
T ss_dssp E-EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-------T---------
T ss_pred E-EEEcCCCCChhccchH----------HHhC---------------CCCHHHHHHHhCCccC-------c---------
Confidence 5 6799999999999997 7874 4566677788888653 1
Q ss_pred CceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEEe
Q psy9581 746 GFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQF 825 (903)
Q Consensus 746 ~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~ 825 (903)
+|. .+++ .++|||||+|||||||||||+|+++++||+||||+||+|||++||+|||||||+|
T Consensus 44 ~f~---------------~~~~---~g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~ 105 (163)
T 1v7l_A 44 DFA---------------RNVR---PGDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLG 105 (163)
T ss_dssp THH---------------HHCC---TTCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEES
T ss_pred chH---------------HhCC---CCCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEe
Confidence 121 2333 2589999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHhh
Q psy9581 826 LNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901 (903)
Q Consensus 826 ~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~~ 901 (903)
+ ++ .++++|+++|+. .++. | . +|++ +|++ ..+++.+++++++||+|||+++++.
T Consensus 106 ~----~~--~l~~gd~i~idl-----~~~~-v----~--~g~~--~~~~--~~~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 106 K----TE--GLKDGDLVTVNW-----ETGE-V----R--KGDE--ILMF--EPLEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp C----CT--TCCTTCEEEEET-----TTTE-E----E--ETTE--EEEC--EECCHHHHHHHHTTSHHHHHHHSCC
T ss_pred c----HH--HcCCCcEEEEEc-----cCCE-E----E--CCcE--EEEE--EcCCHHHHHHHHcCCHHHHHHHHHh
Confidence 7 23 478999999984 3353 3 2 4653 2333 5679999999999999999999763
No 6
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.5e-37 Score=370.38 Aligned_cols=280 Identities=19% Similarity=0.234 Sum_probs=214.1
Q ss_pred CCCCCcCCC------CCceEecCHHHHHHHHhhccccccCCCCCcccCCCCCee-ecCCCCCChhhhh----hhhhh-cc
Q psy9581 535 NFESRIHPS------IYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKI-YLNDIWPSTEEIN----SLEKF-TL 602 (903)
Q Consensus 535 NF~GR~g~~------~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v-~l~d~wP~~~ei~----~~~~~-~~ 602 (903)
=|.+|+.|. .++.||+|| |.+++..+.|+.+..+++||+..+|..| +|.|+| +.+||. +.++. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 378899888 778999999 6689999999999999999999999999 899999 566776 44544 56
Q ss_pred CcchhhhcccccCCCCCCCcccccccccCccccC-CCccccCCCCCCCccccccCCCcccccCceEEEecCCCCCcCccc
Q psy9581 603 NKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHIS 681 (903)
Q Consensus 603 ~~~~f~~~~~~~~~~~~~~w~~~~~~~~~~~~~w-~~styi~~ppff~~~~~~~~~~~~~i~~a~vl~~~gd~itTDhIs 681 (903)
-.++|.+.|+..+.|++. |+++ .+.| +.+-|.++|++ + ..+++ + +++++||||||+||
T Consensus 125 ~~d~f~~v~~~~~~gn~~-a~~v-------l~swa~ae~Ft~~p~~-------~----~~i~g-~-v~~~~~nIdTD~Ii 183 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEY-AKQV-------MQSWADAEWFLNRPAL-------A----EKLTV-T-VFKVTGETNTDDLS 183 (865)
T ss_dssp TTTHHHHHHHHHHTTCHH-HHHH-------HHHHHTTHHHHTSCCC-------C----SCEEE-E-EEEEEEEEEHHHHS
T ss_pred cHHHHHHHHHHHhccCHH-HHHH-------HHhcccccccccCCCC-------C----ceEEE-E-EEecCCCCchhccC
Confidence 688899999988888887 8643 5779 76655555655 2 34555 6 45679999999999
Q ss_pred cCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccCCCceeecCCCchhhHHH
Q psy9581 682 PAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYN 761 (903)
Q Consensus 682 PaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~g~~~~~~~~g~~~~i~~ 761 (903)
|+ +||..+ .++ +.+.++.|.++|. +....|..+.+. ++
T Consensus 184 Pa----------~~l~~~-~d~-------------~~~a~~lf~~~r~------------~~~p~f~~~~~~------~~ 221 (865)
T 1l5j_A 184 PA----------PDAWSR-PDI-------------PLHALAMLKNARE------------GIEPDQPGVVGP------IK 221 (865)
T ss_dssp CG----------GGGGGT-TSH-------------HHHGGGTTCSCBT------------TBCCSBTTTBCS------HH
T ss_pred ch----------hhhhcC-CCH-------------HHHHHHHhhcccc------------CCCccccccccc------hh
Confidence 97 898331 333 3345778887761 112334433321 22
Q ss_pred HHHHhhhcCCceEEEecCCCCCCcchhhHHhhh-------------hhcCeeEEEecchhHHHhhhhccCccceEEecCc
Q psy9581 762 AAMKYISNNISTIIFAGKEYGTGSSRDWAAKGT-------------KLLGVKMVIARSFERIHRANLIGMGILPLQFLNN 828 (903)
Q Consensus 762 aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~-------------~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~~~~~ 828 (903)
.+++++..|. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+||++++
T Consensus 222 ~i~~~~~~G~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~-- 297 (865)
T 1l5j_A 222 QIEALQQKGF-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD-- 297 (865)
T ss_dssp HHHHHHTTSS-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC--
T ss_pred hhhhhhcCCC-EEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec--
Confidence 2345654442 5999999999999999999999 9999 999999999999999999999999996
Q ss_pred ccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHhh
Q psy9581 829 DSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901 (903)
Q Consensus 829 ~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~~ 901 (903)
.+ .++.|++++|+... + +| + ...+|++. +.+.++++++++++++||+++|++++.+
T Consensus 298 --v~--~l~~Gd~i~Idl~~-----g-~I--~-~~~~g~~~----~~f~~~p~~~~~~v~AGGli~~i~~r~l 353 (865)
T 1l5j_A 298 --VS--NLNMGDVIDVYPYK-----G-EV--R-NHETGELL----ATFELKTDVLIDEVRAGGRIPLIIGRGL 353 (865)
T ss_dssp --CT--TCCTTCEEEEETTT-----T-EE--E-ETTTCCEE----EECCCSCTHHHHHHHHTSHHHHHHHHHH
T ss_pred --Hh--hcCCCCEEEEECCC-----C-EE--E-EcCCCeEE----EEEEeCCHHHHHHHHcCChhhhhhcchH
Confidence 22 36889999998533 3 23 2 22567642 4567789999999999999999998775
No 7
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=1e-35 Score=306.80 Aligned_cols=179 Identities=23% Similarity=0.301 Sum_probs=130.4
Q ss_pred CCCCCccccccCCCcccc--cCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccc
Q psy9581 645 PPFFNNFKLKFEYFPKNI--KGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRG 722 (903)
Q Consensus 645 ppff~~~~~~~~~~~~~i--~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~ 722 (903)
.|||.+++..+... +.+ ..++++.+.|||||||||||| +||+. +++++| .++
T Consensus 5 ~~~~~~~~~~~~~M-~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~l-------------~~~ 58 (213)
T 2hcu_A 5 ASMTGGQQMGRGSM-EEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKGF-------------GKY 58 (213)
T ss_dssp --------CCCCCC-CCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSCC-------------GGG
T ss_pred ccccCCcccccccC-CCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHHH-------------HHH
Confidence 47777765444433 222 355899999999999999997 99976 566665 588
Q ss_pred cccccchhhhhhhccCCCCccC-CCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeE
Q psy9581 723 TFSNKRIKNLITILGKNNTQIE-GGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKM 801 (903)
Q Consensus 723 ~F~n~r~~n~l~~~~~~~~~~~-g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~a 801 (903)
+|+++|+.|+ . |.+ .+|+.+.| +|+. ++|||||+|||||||||||+|+++.+||+|
T Consensus 59 ~f~~~r~~~~-~-------g~~~p~f~~~~~------------~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~a 115 (213)
T 2hcu_A 59 LMYEWRYLDN-N-------YTENPDFIFNQP------------EYRE---ASILITGDNFGAGSSREHAAWALADYGFKV 115 (213)
T ss_dssp TTHHHHBSST-T-------CCBCTTSGGGSG------------GGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCE
T ss_pred Hhhccccccc-C-------CCCCCCccccch------------hhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcE
Confidence 9999998764 2 332 35666543 5653 589999999999999999999999999999
Q ss_pred EEecchhHHHhhhhccCccceEEecCccccccc-ccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCC
Q psy9581 802 VIARSFERIHRANLIGMGILPLQFLNNDSIQSL-NITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDT 880 (903)
Q Consensus 802 VIA~Sf~rI~~~N~~~~Gllpl~~~~~~~~~~l-~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t 880 (903)
|||+||+||||+||+|+|||||++++.. ++.+ ..+.|++++|+... + +| + ..+| +. .+. .+
T Consensus 116 VIA~SFArIF~~N~in~GlLpl~~~~~~-~~~l~~~~~G~~i~VDl~~-----~-~I--~--~~~g-~~-----~f~-i~ 177 (213)
T 2hcu_A 116 IVAGSFGDIHYNNDLNNGILPIIQPKEV-RDKLAKLKPTDEVTVNLFE-----Q-KI--Y--SPVG-DF-----SFD-ID 177 (213)
T ss_dssp EEESCBCHHHHHHHHTTTCEEEECCHHH-HHHHHTSCTTCEEEEETTT-----T-EE--E--ETTE-EE-----ECC-CC
T ss_pred EEEchHHHHHHHHHHHcCCCcEEeCHHH-HHHHhccCCCCEEEEECCC-----C-EE--E--ECCc-eE-----EEe-CC
Confidence 9999999999999999999999997532 4432 22789999998543 3 33 2 2445 43 334 38
Q ss_pred HHHHHHHHhc
Q psy9581 881 PMEIKYYQND 890 (903)
Q Consensus 881 ~~e~ei~~aG 890 (903)
++.+++|.+|
T Consensus 178 ~~~k~~l~~G 187 (213)
T 2hcu_A 178 GEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999998
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.2e-35 Score=293.10 Aligned_cols=160 Identities=24% Similarity=0.386 Sum_probs=125.6
Q ss_pred ceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCCCccC
Q psy9581 665 ARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIE 744 (903)
Q Consensus 665 a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~~~~~ 744 (903)
.+++ ++|||||||+|+|+ +||+. .|.+.+.+++|.++| +
T Consensus 7 g~v~-~~gdnIdTD~IiPa----------~~l~~---------------~~~~~l~~~~f~~~~-------p-------- 45 (176)
T 3vba_A 7 GRVW-KFGNNVDTDAILPA----------RYLVY---------------TKPEELAQFVMTGAD-------P-------- 45 (176)
T ss_dssp EEEE-ECCSSCBHHHHSCG----------GGTTC---------------CSHHHHGGGTTTTTC-------T--------
T ss_pred EEEE-EeCCCcchhhcCcH----------HHhCc---------------CCHHHHHHhhCcCCC-------c--------
Confidence 3665 88999999999997 89853 345666788888653 1
Q ss_pred CCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCccceEE
Q psy9581 745 GGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQ 824 (903)
Q Consensus 745 g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gllpl~ 824 (903)
+| +.+|+ .++|||||+|||||||||||+|+++.+|++||||+||+|||++||+|+||||++
T Consensus 46 -~F---------------~~~~~---~g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~ 106 (176)
T 3vba_A 46 -DF---------------PKKVK---PGDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIE 106 (176)
T ss_dssp -TH---------------HHHCC---TTCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEE
T ss_pred -cH---------------HHhcC---CCCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEE
Confidence 11 23554 358999999999999999999999999999999999999999999999999998
Q ss_pred ecCcccccccccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhcCcHHHHHHHhhc
Q psy9581 825 FLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELLN 902 (903)
Q Consensus 825 ~~~~~~~~~l~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aGGll~yv~~~~~~ 902 (903)
+++ +++ .++.|++++|+... + .| + ..++|+ ++ .+.++|+++++++++||++||++++...
T Consensus 107 ~~~--~~~--~~~~gd~i~idl~~-----~-~v--~-~~~~g~---~~--~~~~l~~~~~~ii~aGGli~~~k~~~~~ 166 (176)
T 3vba_A 107 CKG--ISE--KVNEGDELEVNLET-----G-EI--K-NLTTGE---VL--KGQKLPEFMMEILEAGGLMPYLKKKMAE 166 (176)
T ss_dssp CTT--HHH--HCCTTCEEEEETTT-----C-EE--E-ETTTCC---EE--ECCCCCHHHHHHHHHTSHHHHHHHHHHT
T ss_pred cch--HHH--hcCCCCEEEEECCC-----C-EE--E-eCCCCe---EE--EEecCCHHHHHHHHcCCHHHHHHHhcch
Confidence 872 344 36889999998432 3 22 2 224565 33 4457799999999999999999998753
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=99.97 E-value=1.4e-32 Score=280.78 Aligned_cols=162 Identities=22% Similarity=0.352 Sum_probs=123.6
Q ss_pred cccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCC
Q psy9581 661 NIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNN 740 (903)
Q Consensus 661 ~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~ 740 (903)
.+++ +++.+.+||||||+|+|+ +||+. +++++| .+++|.++|+...
T Consensus 9 ~~~G-~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~l-------------g~~~f~~~R~~~~-------- 54 (203)
T 3q3w_A 9 IHKG-IACPLEYANIDTDQIIPK----------QFLLA--VSKQGF-------------GKHLFHDLRYLDD-------- 54 (203)
T ss_dssp EEEE-EEEEECCSSCBHHHHSCG----------GGCBS--SCSSCS-------------GGGTTHHHHBSSS--------
T ss_pred EEEE-EEEECCCcccChhhcchH----------HHcCc--CCHHHH-------------HHhhhhhhhcccc--------
Confidence 3444 888888899999999997 99975 566655 3678999987532
Q ss_pred Ccc---CCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhcc
Q psy9581 741 TQI---EGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIG 817 (903)
Q Consensus 741 ~~~---~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~ 817 (903)
|. ..+|.++.| +|+ .++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|
T Consensus 55 -g~~~~~pdF~~n~~------------~~~---~~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n 118 (203)
T 3q3w_A 55 -KESVLNMDFNLNKK------------EYQ---NSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALG 118 (203)
T ss_dssp -SSCSBCTTSGGGSG------------GGT---TEEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHH
T ss_pred -CCCCCCCChhhccc------------ccC---CCCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHh
Confidence 21 245666543 454 35899999999999999999999999999999999999999999999
Q ss_pred CccceEEecCccccccc----ccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhc
Q psy9581 818 MGILPLQFLNNDSIQSL----NITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQND 890 (903)
Q Consensus 818 ~Gllpl~~~~~~~~~~l----~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aG 890 (903)
+||||+++++.. .+.| .-+.|++++|+... ++| + .+|+++ .+.+ +++.++.|.+|
T Consensus 119 ~Gll~i~~~~~~-~~~l~~~~~~~~g~~i~VDL~~------~~i--~---~~g~~~-----~f~i-~~~~r~~Ll~G 177 (203)
T 3q3w_A 119 NGLLTIELAKDE-VLEIVDELKKSQDKNIEISLLE------KRV--F---FKDKIF-----SFDL-DDFHRICLLEG 177 (203)
T ss_dssp TTCEEEECCHHH-HHHHHHHHHHCSCCEEEEETTT------TEE--E---ETTEEE-----ECCC-CHHHHHHHHHT
T ss_pred CCCCeEEeCHHH-HHHHHHHhhcCCCCEEEEECCC------CEE--E---ECCEEE-----EEEe-CHHHHHHHHcC
Confidence 999999997642 3333 11678999998533 233 2 246533 3343 79999999988
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=99.97 E-value=1.2e-31 Score=267.27 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=119.1
Q ss_pred cccCceEEEecCCCCCcCccccCCCCCCcChhhhhhhhcCCCccccccccCCCCChhhhccccccccchhhhhhhccCCC
Q psy9581 661 NIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNN 740 (903)
Q Consensus 661 ~i~~a~vl~~~gd~itTDhIsPaG~i~~~spag~~L~~~g~~~~~~n~yg~rRgN~~vm~r~~F~n~r~~n~l~~~~~~~ 740 (903)
.+++ +++.+.|||||||+|+|+ +||+. +++++| .+++|.++|.
T Consensus 9 ~~~G-~~~~l~~dnIdTD~IiPa----------~~L~~--~~~~~l-------------~~~~f~~~R~----------- 51 (171)
T 3h5j_A 9 THSG-IGVPLRRSNVDTDQIIPA----------VFLKR--VTRTGF-------------EDGLFAGWRS----------- 51 (171)
T ss_dssp EEEE-EEEEECCCSCCHHHHSCG----------GGTTC--CSCSCC-------------GGGTTTTGGG-----------
T ss_pred EEEE-EEEEccCCccCcccCCch----------hhcCC--CCHHHH-------------HHHhhccCcC-----------
Confidence 3444 889999999999999997 89975 444444 4778998873
Q ss_pred CccCCCceeecCCCchhhHHHHHHHhhhcCCceEEEecCCCCCCcchhhHHhhhhhcCeeEEEecchhHHHhhhhccCcc
Q psy9581 741 TQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGI 820 (903)
Q Consensus 741 ~~~~g~~~~~~~~g~~~~i~~aA~~y~~~~~~~iivag~nfG~GSSRe~A~~~~~~~Gv~aVIA~Sf~rI~~~N~~~~Gl 820 (903)
.+.|.++.+ +|+ .++|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+
T Consensus 52 ---~p~F~~~~~------------~~~---~~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gl 113 (171)
T 3h5j_A 52 ---DPAFVLNLS------------PFD---RGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGL 113 (171)
T ss_dssp ---STTSGGGST------------TGG---GCCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTC
T ss_pred ---CcCcccccc------------ccC---CCcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCC
Confidence 124555543 454 24899999999999999999999999999999999999999999999999
Q ss_pred ceEEecCccccccc----ccCCCcEEEEcCcccccCCCceEEEEEEeCCCeEEEEEEEEeecCCHHHHHHHHhc
Q psy9581 821 LPLQFLNNDSIQSL----NITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQND 890 (903)
Q Consensus 821 lpl~~~~~~~~~~l----~l~~~e~i~i~~~~~~l~~g~~i~v~i~~~~G~~~~~~~~~~~~~t~~e~ei~~aG 890 (903)
|||++++.. .+.| .-+.|++++|+... + +| + .+|++. .| .+ .++.++.|.+|
T Consensus 114 lpi~~~~~~-~~~l~~~~~~~~g~~i~VDl~~-----~-~i--~---~~g~~~-~F----~i-~~~~k~~ll~G 169 (171)
T 3h5j_A 114 LAAEVAQDD-VELLWKLIEQSPGLEITANLQD-----R-II--T---AATVVL-PF----KI-DDHSAWRLLEG 169 (171)
T ss_dssp EEEECCHHH-HHHHHHHHHHSTTCEEEEETTT-----T-EE--E---ETTEEE-EC----BC-CHHHHHHHHHT
T ss_pred ceEEeCHHH-HHHHHHHhhcCCCcEEEEECCC-----C-EE--E---ECCEEE-EE----EE-CHHHHHHHHhC
Confidence 999998542 3332 11789999998543 3 23 2 245543 33 33 68888888776
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=34.93 E-value=31 Score=31.79 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=25.3
Q ss_pred EEEeeccCCCCchHHHHHHHHHHHHHHhCCCccC
Q psy9581 429 IAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEIS 462 (903)
Q Consensus 429 ~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~ 462 (903)
+++|++|.+|---- .+||+.|.+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhT-ymAaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHT-FMAADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CH-HHHHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 47899999987665 4578888899998898776
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=34.58 E-value=32 Score=31.72 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=26.6
Q ss_pred EEEeeccCCCCchHHHHHHHHHHHHHHhCCCccC
Q psy9581 429 IAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEIS 462 (903)
Q Consensus 429 ~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~ 462 (903)
+++|++|.+|---- .+||+.|.+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhT-ymAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHT-YMAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHH-HHHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 47899999986655 5578888899988887776
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=25.13 E-value=39 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=26.4
Q ss_pred EEEeeccCCCCchHHHHHHHHHHHHHHhCCCccC
Q psy9581 429 IAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEIS 462 (903)
Q Consensus 429 ~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~ 462 (903)
+++|++|.+|---- -+||+.|.+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHT-yMAAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHT-FMAAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHH-HHHHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 57899999986655 4578888888888897776
No 14
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=23.83 E-value=51 Score=30.36 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=26.0
Q ss_pred EEEeeccCCCCchHHHHHHHHHHHHHHhCCCccC
Q psy9581 429 IAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEIS 462 (903)
Q Consensus 429 ~a~IgSCTN~s~~dl~~aA~lLa~~av~~G~kv~ 462 (903)
++.|++|.+|--... +||+.|.+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTy-mAAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTY-MAAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHH-HHHHHHHHHHHHCCCEEE
Confidence 478999999876654 567788888888897775
No 15
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=21.97 E-value=1.1e+02 Score=34.30 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=26.7
Q ss_pred hcCeeEEEecc----hhHHHhhhhccCccceEEec
Q psy9581 796 LLGVKMVIARS----FERIHRANLIGMGILPLQFL 826 (903)
Q Consensus 796 ~~Gv~aVIA~S----f~rI~~~N~~~~Gllpl~~~ 826 (903)
.+-|++.+|++ ++++|++|.+.+.|-+|++.
T Consensus 156 ~YeVKafia~~~~~~~dk~~Kr~sV~L~Irklq~a 190 (380)
T 3ugu_A 156 DFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHA 190 (380)
T ss_dssp EEEEEEEEEBCCSSSSSBCCGGGEEEEEEEEEEBC
T ss_pred EEEEEEEEccCcccccccccccceEEEeeeecccC
Confidence 34467999996 89999999999999999984
Done!