RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9581
(903 letters)
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 1410 bits (3653), Expect = 0.0
Identities = 477/892 (53%), Positives = 639/892 (71%), Gaps = 24/892 (2%)
Query: 16 NKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLR 75
K +YSL LE K +ISRLP S+R++LE+++RN D + +TEE I L W PK
Sbjct: 17 GKSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKP 76
Query: 76 IKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDF 135
+E+P R+++QDFTG+P + DLAAMR + +P KI PLVPVDL++DHS+QVD+
Sbjct: 77 DREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDY 136
Query: 136 FREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNK 195
F + + N++LEF+RN+ERYQF+KWG +AF+ F V+PPG GI HQ+NLEYL+ + +
Sbjct: 137 FGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTR 196
Query: 196 DN---IYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIG 252
++ + YPD +VGTDSHTTMIN +GV+GWGVGGIEAEA MLGQP LIP+V+GV L G
Sbjct: 197 EDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSSMLIPEVVGVKLTG 256
Query: 253 KLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGF 312
KL +GVTATDLVLT+T++LRKK VVGKFVEFFG+G+ SL L DRATI+NMAPEYGAT GF
Sbjct: 257 KLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGF 316
Query: 313 FPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLS 372
FP+D+ T++Y TGR+ ++ E+Y K+Q L+ P E YTD++ L+L V PSL+
Sbjct: 317 FPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPL-EEPVYTDVLELDLSTVEPSLA 375
Query: 373 GPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAI 432
GP RPQD I L++VK+ F + GF D E + Y ++ +G ++IAAI
Sbjct: 376 GPKRPQDRIPLSDVKEAFAKSA--ELGVQGFGLDEAEEGEDY------ELPDGAVVIAAI 427
Query: 433 TSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492
TSCTNTSNP++M++AGLLAKKAV+ GL++ P +KTS PGS+VVT+YL +GLL YLE L
Sbjct: 428 TSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLEAL 487
Query: 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASP 552
GFN+V YGC TCIGNSG + +IE+ I +N+++ +++LSGNRNFE RIHP + AN+LASP
Sbjct: 488 GFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASP 547
Query: 553 PLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYK 612
PLV+AYA+AG + +DL +PLG DK+G +YL DIWPS EEI+++ + +F Y
Sbjct: 548 PLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYA 607
Query: 613 NIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCIL 671
++ + W+ I + +Y+W P STYI PP+F + ++IKGAR L +L
Sbjct: 608 DVFEGD-ERWNAI-EVPEGPLYDWDPDSTYIRNPPYFEGMLAEPGP-VRDIKGARVLALL 664
Query: 672 GDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKN 731
GDSITTDHISPAG I+ SPAGK+L+ +GV +FNSYGSRRGNHEVM+RGTF+N RI+N
Sbjct: 665 GDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRN 724
Query: 732 LITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAA 791
+ +EGG+T + P GE MSIY+AAMKY ++ AGKEYGTGSSRDWAA
Sbjct: 725 EMV------PGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAA 778
Query: 792 KGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKI 851
KGT+LLGVK VIA SFERIHR+NL+GMG+LPLQF +S ++L + G E FD++G+ +
Sbjct: 779 KGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE-DL 837
Query: 852 KPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELLNS 903
KP + +I R +G+ + +L RIDT +E+ YY+N GIL +VLR+LL S
Sbjct: 838 KPGATVTVVITRADGEV-VEFPVLCRIDTAVEVDYYRNGGILQYVLRDLLAS 888
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 1331 bits (3448), Expect = 0.0
Identities = 522/899 (58%), Positives = 669/899 (74%), Gaps = 24/899 (2%)
Query: 8 LKEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELM 67
LKEF + K KFYSLP L K+ +++RLPVS+R++LE+++RN D KK+TEE++ L
Sbjct: 9 LKEFDVG-GKTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALA 67
Query: 68 NWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIV 127
NW P+ E+P + R+++QDFTG+P L DLAAMR A + +P KI PLVPVDL+V
Sbjct: 68 NWLPERKSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVV 127
Query: 128 DHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEY 187
DHS+ VD+F +K +LDLNM++EF+RN ERYQF+KWGMQAF+ F V+PPG GI+HQ+NLEY
Sbjct: 128 DHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIMHQVNLEY 187
Query: 188 LSRGI----LNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIP 243
L+R + + D + YPD +VGTDSHTTMIN IGV+GWGVGGIEAEA MLGQP+Y LIP
Sbjct: 188 LARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIP 247
Query: 244 DVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMA 303
DV+GV L GKL +GVTATDLVLT+T++LRK+ VVGKFVEFFG+GV SL L DRATI+NMA
Sbjct: 248 DVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMA 307
Query: 304 PEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLN 363
PEYGAT+GFFPVD+ T++Y TGR +I E+Y K+Q L+G PK E YT + L+
Sbjct: 308 PEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPK-AEPRYTRTLELD 366
Query: 364 LDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIK 423
L V+PSL+GP RPQD I L NVK F++L KP +NGF K T NG+ +
Sbjct: 367 LSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGFAKKAQ-------TSNGVDLP 419
Query: 424 NGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNS 483
+G + IAAITSCTNTSNP+++++AGLLAKKAV+ GL + P +KTS PGS+VVTEYL +
Sbjct: 420 DGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERA 479
Query: 484 GLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPS 543
GLL YLEKLGF IV YGC TCIGNSG + +IE+ I N+++ +++LSGNRNFE RIHP+
Sbjct: 480 GLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPN 539
Query: 544 IYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLN 603
I ANFLASPPLV+AYA+AG + DL EPLG K+G+ +YL DIWPS+ EI++L F ++
Sbjct: 540 IKANFLASPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVD 599
Query: 604 KNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNI 662
F NY +LW+ I + +Y+W P STYI +PPFF+ +
Sbjct: 600 PEDFRKNY-AEVFKGSELWAAI-EAPDGPLYDWDPKSTYIRRPPFFDFSMGPAAS-IATV 656
Query: 663 KGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRG 722
KGAR L +LGDSITTDHISPAG I+ SPAGK+L NGV K +FNSYGSRRGNHEVM+RG
Sbjct: 657 KGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRG 716
Query: 723 TFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYG 782
TF+N RIKNL+ I GK EGG T +QPSGE +SIY+AAM+Y + ++ AG+EYG
Sbjct: 717 TFANVRIKNLM-IPGK-----EGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYG 770
Query: 783 TGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYF 842
TGSSRDWAAKGT+LLGVK VIA SFERIHR+NL+GMG+LPLQF DS QSL +TG E F
Sbjct: 771 TGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETF 830
Query: 843 DLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901
D++G+ +IKP + + +I+R +G +++ +L RIDTP+E+ YY+ GILP+VLR+LL
Sbjct: 831 DIEGLPGEIKPRQDVTLVIHRADG-STERVPVLCRIDTPIEVDYYKAGGILPYVLRQLL 888
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 1177 bits (3047), Expect = 0.0
Identities = 465/896 (51%), Positives = 625/896 (69%), Gaps = 23/896 (2%)
Query: 12 QISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKP 71
+ + K+YSL +L + + +LP SIR++LES +RN D +T + + ++NW+
Sbjct: 22 TLKDGGSYKYYSLNEL---HDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78
Query: 72 KDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSI 131
+ E+P R+LLQDFTG+P + DLAAMR K++ +P KI PLVPVDL++DHS+
Sbjct: 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSV 138
Query: 132 QVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRG 191
QVDF R +L+LN ++EF+RN ER++F+KWG +AF ++PPG GIVHQ+NLEYL+R
Sbjct: 139 QVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARV 198
Query: 192 ILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLI 251
+ NKD + YPD +VGTDSHTTMIN +GV+GWGVGGIEAEA MLGQPI ++P+V+G L
Sbjct: 199 VFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLT 258
Query: 252 GKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIG 311
GKL++ VTATDLVLT+T +LRK+ VVGKFVEF+G GVK+L L DRATI+NMAPEYGAT+G
Sbjct: 259 GKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318
Query: 312 FFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSL 371
FFP+D+ T++Y TGR+ +++ E Y K+ LF +I+Y+D++ L+L V PS+
Sbjct: 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRTYA-EQIEYSDVLELDLSTVVPSV 377
Query: 372 SGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNK-IYITKNGIK--IKNGDIL 428
+GP RP D + L+++KK FT L P GF + K + T G + + +G ++
Sbjct: 378 AGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVV 437
Query: 429 IAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLY 488
IAAITSCTNTSNP++ML+AGLLAKKAV+ GL++ P IKTS +PGS+VVT+YL SGLL Y
Sbjct: 438 IAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGLLKY 497
Query: 489 LEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANF 548
LEKLGF YGC TCIGNSG + ++ E I NN+++ +++LSGNRNFE R+HP AN+
Sbjct: 498 LEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANY 557
Query: 549 LASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFY 608
LASPPLV+AYA+AG + +D EPLG DK GK ++L DIWPS EEI +LE + +F
Sbjct: 558 LASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFK 617
Query: 609 FNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARA 667
Y NI K W+ + +Y W STYI PPFF +L+ K+I+ A
Sbjct: 618 EVYSNITQG-NKQWNEL-QVPKGKLYEWDEKSTYIHNPPFFQTMELEPPPI-KSIENAYC 674
Query: 668 LCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNK 727
L LGDSITTDHISPAG I ++SPA K+L+ GV + +FN+YG+RRGN EVM+RGTF+N
Sbjct: 675 LLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTFANI 734
Query: 728 RIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSR 787
R+ N + GK G T + P+GEKMSIY+AA KY + I+ AGKEYG+GSSR
Sbjct: 735 RLINK--LCGK-----VGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSR 787
Query: 788 DWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGI 847
DWAAKG L GVK VIA SFERIHR+NL+GMGILPLQFLN ++ SL +TG E F +
Sbjct: 788 DWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLN 847
Query: 848 SKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELLNS 903
S ++KP + + + GK I LRIDT +E++Y+++ GIL +VLR+L+
Sbjct: 848 SGELKPGQDVT--VKTDTGKTFDTI---LRIDTEVEVEYFKHGGILQYVLRKLVKG 898
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 1125 bits (2911), Expect = 0.0
Identities = 467/895 (52%), Positives = 616/895 (68%), Gaps = 40/895 (4%)
Query: 9 KEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMN 68
++ K +Y LP LE+ + IS+LP S++I+LE+++R D TEE+I L
Sbjct: 6 RKTLTVGGKTYYYYDLPKLEE--SGKISKLPYSLKILLENLLRGED---GTEEHIEALAR 60
Query: 69 WKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVD 128
W P KE+ R+++QDFTG+P + DLAAMR ++ +P KI P+VPVDL++D
Sbjct: 61 WLPSGKPEKEIAFRPARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVID 120
Query: 129 HSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYL 188
HS+QVD + + + N++LEF+RN ERY+F+KW +AF F V+PPG GI+HQ+NLEYL
Sbjct: 121 HSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQVNLEYL 180
Query: 189 SRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGV 248
++ + K + YPD +VGTDSHTTMI +GV+GWGVGGIEAEA MLGQP Y LIP+V+GV
Sbjct: 181 AKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240
Query: 249 NLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGA 308
L GKL +GVTATDLVLT+T +LRKK VVGKFVEFFG GV SL L DRATI+NM PEYGA
Sbjct: 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGA 300
Query: 309 TIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVS 368
T GFFP+D+ T++Y TGR+ ++ E+Y K+Q L+ P + +Y ++ L+L V
Sbjct: 301 TSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKAQGLWYDPADKDAEYDKVLELDLSTVE 360
Query: 369 PSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDIL 428
PSL+GP RPQD + L+ V + F ++L + K + + G ++ +G ++
Sbjct: 361 PSLAGPKRPQDRVPLSEVAENFEKILREIEIKRVY------------SLLGKELGDGKVV 408
Query: 429 IAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLY 488
IAAITSCTNTSNP+++++AGLLAKKAV+ GL++ P +KTS PGS+VVTEYL +GLL Y
Sbjct: 409 IAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPY 468
Query: 489 LEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANF 548
LEKLGFNIV YGC TCIGNSG + +IE+ I +N+++ +++LSGNRNFE RI P + AN+
Sbjct: 469 LEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANY 528
Query: 549 LASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFY 608
LASPPLV+AYA+AG I DLT +PLG D +GK +YL DIWPSTEEI + +F
Sbjct: 529 LASPPLVVAYALAGTINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFR 588
Query: 609 FNYKNIKNNPGKLWSNISDTVIDNIYNWP-ISTYISQPPFFNNFKLKFEYFPKNIKGARA 667
Y ++ W+ I +Y+WP ISTYI PPFF+ + PK IKGAR
Sbjct: 589 KEYADVFK-----WNAIEVPE-GPLYDWPNISTYIRLPPFFDGMGAE----PKPIKGARV 638
Query: 668 LCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNK 727
L LGDSITTDHISPAG I+ SPAGK+L +GV + +FNSYGSRRGNHEVM+RGTF+N
Sbjct: 639 LAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANI 698
Query: 728 RIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSR 787
RI+N + EGG+T +QPSGE IY+AAMKY I ++ AGK YGTGSSR
Sbjct: 699 RIRNEM-------VPGEGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSR 748
Query: 788 DWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGI 847
DWAAKG +LLGVK VIA SFERIHR+NLIGMG+LPLQF N ++ L + G E D+ G+
Sbjct: 749 DWAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGL 808
Query: 848 SKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELLN 902
+KP + + R +G + +L RIDT EI+YY+ GIL +V R+LL
Sbjct: 809 E-NLKPGATVTVTVTRGDGPVE-EFPVLCRIDTAEEIEYYKAGGILNYVKRDLLK 861
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 1122 bits (2903), Expect = 0.0
Identities = 482/891 (54%), Positives = 628/891 (70%), Gaps = 21/891 (2%)
Query: 17 KKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRI 76
K +YSL LE+ IS+LP SIRI+LES++RN D ITEE I ++ WK ++
Sbjct: 1 KTYYYYSLKALEESGG-KISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVAD 59
Query: 77 KELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFF 136
E+ R+++QDFTG+P + DLAAMR K + +PKKI PLVPVDL++DHS+QVD++
Sbjct: 60 TEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYY 119
Query: 137 REKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKD 196
+ +L+ NM+LEF+RN ERYQF+KW +AF F V+PPG GI+HQ+NLEYL+ + +
Sbjct: 120 GTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAE 179
Query: 197 N----IYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIG 252
YPD +VGTDSHTTMIN +GV+GWGVGGIEAEA MLGQP Y +P+VIGV L G
Sbjct: 180 VDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTG 239
Query: 253 KLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGF 312
KL +GVTATDLVLT+T++LRKK VVGKFVEFFG G+ L L DRATI+NMAPEYGAT GF
Sbjct: 240 KLQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGF 299
Query: 313 FPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLS 372
FP+D +T+ Y TGR+ ++ E Y ++Q LF E YTD++ L+L +V PS++
Sbjct: 300 FPIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFY-DDSEEPRYTDVVELDLSDVEPSVA 358
Query: 373 GPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAI 432
GP RPQD I L VK KF++ L K GF L K +N ++++G ++IAAI
Sbjct: 359 GPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQN-KQLEDGAVVIAAI 417
Query: 433 TSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492
TSCTNTSNP++ML AGLLAKKAV+ GL++ P +KTS PGS+VVT+YL SGLL YLE+L
Sbjct: 418 TSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEEL 477
Query: 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASP 552
GFN+V YGC TCIGNSG + +EE I N++ ++LSGNRNFE RIHP + N+LASP
Sbjct: 478 GFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASP 537
Query: 553 PLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYK 612
PLV+AYA+AGNI ++L EP+G DK+GK +YL DIWPS +EI + + +F Y+
Sbjct: 538 PLVVAYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYE 597
Query: 613 NI-KNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCI 670
NI + N + W++I D Y+W STYI PPFF K E ++IKGAR L +
Sbjct: 598 NIFEGN--ERWNSIKTPSGD-TYSWDEKSTYIRLPPFFEEMKQDPEE-VEDIKGARILLL 653
Query: 671 LGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIK 730
LGDSITTDHISPAG I + SPAGK+L GV + +FNSYGSRRGNHEVM+RGTF+N RIK
Sbjct: 654 LGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713
Query: 731 NLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWA 790
NL+ EGG+T + P G+ S+Y+AAM+Y ++ AGKEYG+GSSRDWA
Sbjct: 714 NLMV------KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWA 767
Query: 791 AKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKK 850
AKGTKLLGVK VIA SFERIHR+NL+GMG++PLQF + ++L +TG+E D+ GI K
Sbjct: 768 AKGTKLLGVKAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGI-KD 826
Query: 851 IKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901
+KP +++ G+KI K +LRIDT +E+ YY++ GIL +VLR+ L
Sbjct: 827 LKPGKEVTVTFTNSKGEKI-TFKCVLRIDTEVELDYYKHGGILQYVLRKFL 876
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 1007 bits (2606), Expect = 0.0
Identities = 448/895 (50%), Positives = 606/895 (67%), Gaps = 29/895 (3%)
Query: 19 GKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKE 78
GK+YSLP L + I +LP SIRI+LES IRN D ++T+E + ++++W+ + E
Sbjct: 61 GKYYSLPALN---DPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVE 117
Query: 79 LPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFRE 138
+P R+LLQDFTG+P + DLA MR + +P KI PLVPVDL++DHS+QVD R
Sbjct: 118 IPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARS 177
Query: 139 KKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNI 198
+ ++ NM+LEF+RNKER+ F+KWG AF V+PPG GIVHQ+NLEYL R + N D I
Sbjct: 178 ENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGI 237
Query: 199 YYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGV 258
YPD +VGTDSHTTMI+ +GV GWGVGGIEAEA MLGQP+ ++P V+G L GKL GV
Sbjct: 238 LYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGV 297
Query: 259 TATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKI 318
TATDLVLT+T++LRK VVGKFVEF+G+G+ L L DRATI+NM+PEYGAT+GFFPVD +
Sbjct: 298 TATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 357
Query: 319 TVNYFYNTGRNNLEIKAFESYFKSQKLF---GIPKIGEIDYTDIITLNLDNVSPSLSGPN 375
T+ Y TGR++ + E+Y ++ K+F P+ E Y+ + L+L++V P +SGP
Sbjct: 358 TLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQ-ERVYSSYLELDLEDVEPCISGPK 416
Query: 376 RPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIY-ITKNG--IKIKNGDILIAAI 432
RP D + L +K + L GF +K+ + +G ++++G ++IAAI
Sbjct: 417 RPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAI 476
Query: 433 TSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492
TSCTNTSNP++ML AGL+AKKA + GLE+ P IKTS PGS VVT+YL SGL YL +
Sbjct: 477 TSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQ 536
Query: 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASP 552
GF+IV YGC TCIGNSG++ + I N+I+ +++LSGNRNFE R+HP AN+LASP
Sbjct: 537 GFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 596
Query: 553 PLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYK 612
PLV+AYA+AG + +D EP+G K+GK ++ DIWPS EE+ + + ++ ++F Y+
Sbjct: 597 PLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYE 656
Query: 613 NI-KNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCI 670
I K NP +W+ +S +Y+W P STYI +PP+F N + P +K A L
Sbjct: 657 AITKGNP--MWNQLS-VPSGTLYSWDPKSTYIHEPPYFKNMTMS-PPGPHGVKDAYCLLN 712
Query: 671 LGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIK 730
GDSITTDHISPAG I + SPA K+L+ GV + +FNSYGSRRGN E+M RGTF+N RI
Sbjct: 713 FGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIV 772
Query: 731 NLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWA 790
N + ++ G T + P+GEK+S+++AAMKY S TII AG EYG+GSSRDWA
Sbjct: 773 NKLL-----KGEV-GPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWA 826
Query: 791 AKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYF--DLKGIS 848
AKG LLGVK VIA+SFERIHR+NL+GMGI+PL F + + +L +TG+E + DL
Sbjct: 827 AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNI 886
Query: 849 KKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLRELLNS 903
+IKP + D + NG K LR DT +E+ Y+ + GILP+V+R L+
Sbjct: 887 SEIKPGQ--DVTVTTDNG---KSFTCTLRFDTEVELAYFDHGGILPYVIRNLIKQ 936
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain. Aconitase A
catalytic domain. This is the major form of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydrolyase. It includes bacterial
and archaeal aconitase A, and the eukaryotic cytosolic
form of aconitase. This group also includes sequences
that have been shown to act as an iron-responsive
element (IRE) binding protein in animals and may have
the same role in other eukaryotes.
Length = 404
Score = 685 bits (1771), Expect = 0.0
Identities = 258/484 (53%), Positives = 328/484 (67%), Gaps = 84/484 (17%)
Query: 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDL 144
R++LQDFTG+P + DLAAMR K++ +P+KI PL+PVDL++DHS+QVDF+ +L
Sbjct: 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAK 60
Query: 145 NMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGI----LNKDNIYY 200
NM+LEF+RN+ERY+F+KWG +AF V+PPG GI+HQ+NLEYL+R + + D + Y
Sbjct: 61 NMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAY 120
Query: 201 PDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTA 260
PD +VGTDSHTTMIN +GV+GWGVGGIEAEA MLGQPI L+P+V+GV L GKL GVTA
Sbjct: 121 PDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGVTA 180
Query: 261 TDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITV 320
TDLVLT+T++LRK VVGKFVEFFG GV L + DRATI+NMAPEYGAT GFFPVD
Sbjct: 181 TDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236
Query: 321 NYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDL 380
T ++ L+L V PS+SGP RPQD
Sbjct: 237 ------------------------------------TQVVELDLSTVEPSVSGPKRPQDR 260
Query: 381 IKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSN 440
+ L +G ++IAAITSCTNTSN
Sbjct: 261 VPL----------------------------------------HGSVVIAAITSCTNTSN 280
Query: 441 PNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYG 500
P++ML+AGLLAKKAV+ GL++ P +KTS PGSRVVT+YL SGLL YLEKLGF++V YG
Sbjct: 281 PSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLGFHVVGYG 340
Query: 501 CATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAI 560
C TCIGNSG + ++EE I N+++ +++LSGNRNFE RIHP + AN+LASPPLV+AYA+
Sbjct: 341 CTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYAL 400
Query: 561 AGNI 564
AG +
Sbjct: 401 AGTV 404
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to aconitases
A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PMID:12473114).
Length = 858
Score = 694 bits (1793), Expect = 0.0
Identities = 344/863 (39%), Positives = 524/863 (60%), Gaps = 51/863 (5%)
Query: 37 RLPVSIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPL 96
+LP + RI+ E+++R D + ++ + +++ K +DL + P R++ D G
Sbjct: 32 KLPYTSRILAENLVRRCDPETLSA-SLLQIIERK-RDL---DFPWYPARVVCHDILGQTA 86
Query: 97 LTDLAAMR-SIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFR-EKKSLDLNMQLEFKRNK 154
L DLA +R +IA+K +P ++ P+VP LIVDHS+ V++ + + + N +E +RN+
Sbjct: 87 LVDLAGLRDAIAEK-GGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNE 145
Query: 155 ERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMI 214
+R+ FI W AF +VIP G GI+HQINLE +S I K+ + +PD VGTDSHT +
Sbjct: 146 DRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHV 205
Query: 215 NSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKK 274
+++GVI GVGG+EAE MLG+ +PD++GV L GK G+TATD+VL +T+ LRK+
Sbjct: 206 DALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITATDIVLALTEFLRKE 265
Query: 275 NVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIK 334
VV ++EFFG+G ++L + DRATISNM PEYGAT F +D+ T++Y TGR ++K
Sbjct: 266 RVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVK 325
Query: 335 AFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELL 394
E+Y K+ L+ + Y ++ +L +V +++GP+ P + +++ +
Sbjct: 326 LVETYAKAAGLWA-DSLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAAR----- 379
Query: 395 IKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKA 454
G E G+ + +G ++IAAITSCTNTSNP +++AGLLA+ A
Sbjct: 380 -------GIAGPAEE------QPEGL-MPDGAVIIAAITSCTNTSNPRNVVAAGLLARNA 425
Query: 455 VKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQ 514
+ GL+ P +KTSF PGS+V YL +GLL LE+LGF IVA+ C TC G SG +
Sbjct: 426 NQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGIVAFACTTCNGMSGALDPV 485
Query: 515 IEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLG 574
I++ II+ ++ +++LSGNRNF+ RIHP FLASPPLV+AYAIAG I D+ + LG
Sbjct: 486 IQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLG 545
Query: 575 IDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDT--VIDN 632
+D +GK I L DIWPS EEI+++ + F Y + ++ DT +
Sbjct: 546 VDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPM--------FDLDDTQSAVSP 597
Query: 633 IYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSP 691
+Y+W P+STYI +PP++ + +KG R L ILGD+ITTDH+SP+ I S
Sbjct: 598 LYDWRPMSTYIRRPPYWEGALAG----ERTLKGMRPLAILGDNITTDHLSPSNAILADSA 653
Query: 692 AGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQI-EGGFTYY 750
AG++L G+ +++FNSY + RG+H R TF+N ++ N + KN+ + +G
Sbjct: 654 AGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMV---KNDGSVKQGSLARI 710
Query: 751 QPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERI 810
+P G+ ++ A Y++ II AG +YG GSSRDWAAKG +L GV+ ++A FERI
Sbjct: 711 EPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERI 770
Query: 811 HRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIK 870
HR NL+GMG+LPL+F + +L + G E FD+ G +I P + ++ RKNG+K+
Sbjct: 771 HRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDVVG---EITPRADLTLVVTRKNGEKL- 826
Query: 871 KIKLLLRIDTPMEIKYYQNDGIL 893
++ + R+DT E+ Y+ G+L
Sbjct: 827 EVPVTCRLDTAEEVSVYEAGGVL 849
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase).
Length = 464
Score = 422 bits (1086), Expect = e-139
Identities = 160/506 (31%), Positives = 233/506 (46%), Gaps = 44/506 (8%)
Query: 58 ITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKI 117
+ E+ + ++ + L + R+L+QD T L A +++
Sbjct: 2 LYEKILDAHVDDPANERGTPYLYIRPDRVLMQDVTSPQAFLGLRAAGRPVRRVPG----- 56
Query: 118 EPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGF 177
+ DH+I EK DLN+ +E RNKE+Y F++ ++AF P
Sbjct: 57 -----TTITCDHNIPTQDGGEK---DLNIAIE--RNKEQYDFLEKNVKAFGVGFWGPGST 106
Query: 178 GIVHQINLEYLSRGILNKDNIYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQ 236
GIVHQI LE P +VGTDSHT +G + +GVGG EAE + GQ
Sbjct: 107 GIVHQIGLENGFT---------LPGLTLVGTDSHTPTHGGLGALAFGVGGSEAEHVLAGQ 157
Query: 237 PIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDR 296
P P V+G+ L GKLN G+TA D++L + L K GK VEFFG+G+ L + R
Sbjct: 158 PWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDDLSMEGR 217
Query: 297 ATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDY 356
TI NMA E GAT G FP D+ T Y TGR +A E+ K + L + Y
Sbjct: 218 MTICNMAIEIGATTGLFPPDETTFKYLKGTGRAPKAEEADEAVAKWKTLKSDK---DAQY 274
Query: 357 TDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYIT 416
+I ++L ++ P ++GP PQD + ++ V L L
Sbjct: 275 DKVIEIDLSDIEPHVTGPTTPQDAVPISEVPPDPNNFLDPVVKSMEKALAYMGLWP---- 330
Query: 417 KNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVV 476
G +K+ + A I SCTN+S +L +A ++ A G + P +K + PGS V
Sbjct: 331 --GTPLKDIKVDKAFIGSCTNSSYEDLRRAAAIVKGAA---GKGLKPWVKATVVPGSEQV 385
Query: 477 TEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNF 536
GL ++ GF A GC+ CIG + + I+ + + S NRNF
Sbjct: 386 KATAERDGLDKIFDEAGFEWRANGCSPCIGMNDR-PDIIKGEKN------TCVSSSNRNF 438
Query: 537 ESRIHPSIYANFLASPPLVIAYAIAG 562
E R + ++LASP +V A AIAG
Sbjct: 439 EGRQGANGRTHWLASPAMVAAAAIAG 464
>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain. This is the
major form of the TCA cycle enzyme aconitate hydratase,
also known as aconitase and citrate hydro-lyase. It
includes bacterial and archaeal aconitase A, and the
eukaryotic cytosolic form of aconitase. This group also
includes sequences that have been shown to act as an
iron-responsive element (IRE) binding protein in animals
and may have the same role in other eukaryotes. This is
the aconitase-like swivel domain, which is believed to
undergo swivelling conformational change in the enzyme
mechanism.
Length = 171
Score = 288 bits (740), Expect = 2e-92
Identities = 107/177 (60%), Positives = 132/177 (74%), Gaps = 6/177 (3%)
Query: 670 ILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRI 729
+LGDS+TTDHISPAG I + SPAGK+L GV +FNSYGSRRGN EVM+RGTF+N R+
Sbjct: 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRL 60
Query: 730 KNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDW 789
+N + EGG T++ P+GE MSIY+AAM+Y + +I AGKEYG+GSSRDW
Sbjct: 61 RNKLV------PGTEGGTTHHPPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDW 114
Query: 790 AAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKG 846
AAKG LLGVK VIA SFERIHR+NL+GMGILPLQF ++ SL +TG E +D+ G
Sbjct: 115 AAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDIIG 171
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes
the reversible isomerization of citrate and isocitrate
as part of the TCA cycle. Aconitase catalytic domain.
Aconitase (aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Cis-aconitate is formed as an intermediate
product during the course of the reaction. In eukaryotes
two isozymes of aconitase are known to exist: one found
in the mitochondrial matrix and the other found in the
cytoplasm. Aconitase, in its active form, contains a
4Fe-4S iron-sulfur cluster; three cysteine residues
have been shown to be ligands of the 4Fe-4S cluster.
This is the Aconitase core domain, including structural
domains 1, 2 and 3, which binds the Fe-S cluster. The
aconitase family also contains the following proteins: -
Iron-responsive element binding protein (IRE-BP), a
cytosolic protein that binds to iron-responsive elements
(IREs). IREs are stem-loop structures found in the
5'UTR of ferritin, and delta aminolevulinic acid
synthase mRNAs, and in the 3'UTR of transferrin
receptor mRNA. IRE-BP also express aconitase activity. -
3-isopropylmalate dehydratase (isopropylmalate
isomerase), the enzyme that catalyzes the second step in
the biosynthesis of leucine. - Homoaconitase
(homoaconitate hydratase), an enzyme that participates
in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 389
Score = 285 bits (730), Expect = 6e-88
Identities = 145/481 (30%), Positives = 208/481 (43%), Gaps = 93/481 (19%)
Query: 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDL 144
R++LQD TG + + + K+ + + DH++Q
Sbjct: 1 RVMLQDATGPMAMKAFEILAA--------LGKVADPSQIACVHDHAVQ------------ 40
Query: 145 NMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPDII 204
LE N E ++F+ + A PG GI+HQI +E D++
Sbjct: 41 ---LEKPVNNEGHKFLSF-FAALQGIAFYRPGVGIIHQIMVEN---------LALPGDLL 87
Query: 205 VGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLV 264
VG+DSHTT +G I G GG + M G P + P+V+GVNL GKL+ GVT D+V
Sbjct: 88 VGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDVV 147
Query: 265 LTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFY 324
L + ++ V+ + VEF+G+GV SL + DR TI NM E GAT G FP DK T+ +
Sbjct: 148 LKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLE 207
Query: 325 NTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLN 384
TGR L+ F + L +Y +I ++L + P +SGPNRP D + ++
Sbjct: 208 ATGRPLLKNLWLA--FPEELL----ADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVS 261
Query: 385 NVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLM 444
V+ I I SCTN + + M
Sbjct: 262 EVEG------------------------------------TKIDQVLIGSCTN-NRYSDM 284
Query: 445 LSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATC 504
L+A L K A ++P ++ TPGSR+V L+ G L G I+ GC C
Sbjct: 285 LAAAKLLKGAK-----VAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILPPGCGPC 339
Query: 505 IGNS-GKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGN 563
+GN + + SGNRNF R+ +LASP L A AIAG
Sbjct: 340 MGNGARLVADGE-----------VGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388
Query: 564 I 564
I
Sbjct: 389 I 389
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 275 bits (705), Expect = 3e-81
Identities = 193/698 (27%), Positives = 282/698 (40%), Gaps = 195/698 (27%)
Query: 143 DLNM-QLEFKRNKERYQFIKWGMQAFNKFNVI--PPGFGIVHQINLEYLSRGILNKDNIY 199
D N+ Q +F+ N + ++F+ K+ + PG GI HQ++LE +
Sbjct: 64 DHNLLQADFE-NADDHRFL---QSVAAKYGIYFSKPGNGICHQVHLERFAF--------- 110
Query: 200 YP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGV 258
P ++G+DSHT +G++ G GG++ M G P Y +P V+GV L GKL V
Sbjct: 111 -PGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWV 169
Query: 259 TATDLVLTITKLLRKKNV---VGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPV 315
+A D++L +LLR+ V VGK +E+FG GV +L +P+RATI+NM E GAT FP
Sbjct: 170 SAKDVIL---ELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIFPS 226
Query: 316 DKITVNYFYNTGRNNL--EIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSG 373
D+ T + GR + E+ A + +Y ++I ++L + P ++G
Sbjct: 227 DERTREFLKAQGREDDWVELLADP---------------DAEYDEVIEIDLSELEPLIAG 271
Query: 374 PNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAIT 433
P+ P +++ ++ V GIK+ I
Sbjct: 272 PHSPDNVVPVSEVA-------------------------------GIKVDQV-----LIG 295
Query: 434 SCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSF--TPGSRVVTEYLNNSGLLLYLEK 491
SCTN+S +LM +A +L K V K S PGSR V E L G L L
Sbjct: 296 SCTNSSYEDLMRAASILKGKKV--------HPKVSLVINPGSRQVLEMLARDGALADLIA 347
Query: 492 LGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRI-HPSIYANFLA 550
G I+ C CIG + N + + NRNF R +LA
Sbjct: 348 AGARILENACGPCIGMGQAPAT-------GNVSLRTF----NRNFPGRSGTKDAQV-YLA 395
Query: 551 SPPLVIAYAIAGNILVDLTIEPLGI-DKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYF 609
SP A A+ G I +P + +NG+ L + P E F ++
Sbjct: 396 SPETAAASALTGVI-----TDPRTLALENGEYPKLEE--P--------EGFAVDDAGIIA 440
Query: 610 NYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKFEYFPKNIKGARALC 669
++ V+ I P E P ++ + L
Sbjct: 441 PAED----------GSDVEVV-------RGPNIKPLP-------LLEPLP-DLLEGKVLL 475
Query: 670 ILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRI 729
+GD+ITTDHI PAG KWL Y R N I
Sbjct: 476 KVGDNITTDHIMPAG--------AKWL-----------PY---RSN-------------I 500
Query: 730 KNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDW 789
N+ F + + K I+ G+ YG GSSR+
Sbjct: 501 PNI-----SEFV-----FEGVDNT------FPERAK---EQGGGIVVGGENYGQGSSREH 541
Query: 790 AAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
AA + LGVK V+A+SF RIH+ANLI GILPL F +
Sbjct: 542 AALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFAD 579
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase [Energy metabolism,
TCA cycle].
Length = 745
Score = 231 bits (591), Expect = 9e-65
Identities = 216/776 (27%), Positives = 320/776 (41%), Gaps = 150/776 (19%)
Query: 118 EPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFI-----KWGMQAFNKFNV 172
+ VP + DH I +K DL + NKE + F+ K+G+ +
Sbjct: 80 QVAVPASIHCDHLIVGQKGGDK---DLARAIAT--NKEVFDFLESAGKKYGIGFW----- 129
Query: 173 IPPGFGIVHQINLE-YLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEA 231
PG GI+HQI LE Y G++ ++GTDSHT +G I GVGG +A
Sbjct: 130 -KPGSGIIHQIVLENYAFPGLM----------MLGTDSHTPNAGGLGTIAIGVGGADAVD 178
Query: 232 GMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSL 291
+ G P P ++GV L GKLN + D++L + LL + G VE+FG GV+SL
Sbjct: 179 ALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYFGPGVESL 238
Query: 292 LLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKI 351
ATI NM E GAT FP ++ Y T R + + ++ S +
Sbjct: 239 SCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIA-EDAKTGQYSFFKLKADEG 297
Query: 352 GEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELN 411
+ Y ++I ++L + P ++GP P ++ K+ KNG+ + ++
Sbjct: 298 AQ--YDELIEIDLSKLEPHINGPFTPDLSTPISKFKET--------VQKNGWPEKLS--- 344
Query: 412 KIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTP 471
I SCTN+S + M + K A + GL+ PK TP
Sbjct: 345 -----------------AGLIGSCTNSSYED-MSRCASIVKDAEQAGLK--PKSPFYVTP 384
Query: 472 GSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIG--NSGKIKSQIEEIIINNNIITSSI 529
GS + L G+L EK G ++A C CIG + + E N I+TS
Sbjct: 385 GSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKDDVKKGEP----NTILTSY- 439
Query: 530 LSGNRNFESR--IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLG---IDKNGKKIYL 584
NRNF R +P+ NFLASP +V A + AG LT PL +GK+
Sbjct: 440 ---NRNFRGRNDGNPATM-NFLASPEIVTAMSYAG----SLTFNPLTDSLTTPDGKEFKF 491
Query: 585 NDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYIS- 643
P +E+ + F ++ F PG N+ + P S +
Sbjct: 492 PA--PKGDELPE-KGFEAGRDTFQ-------APPGSPNPNV------EVAVSPSSDRLQL 535
Query: 644 -QPPFFNNFKLKFEYFP-KNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGV 701
+P FE + K++ G R L + TTDHI S AG WL
Sbjct: 536 LEP---------FEPWNGKDLSGLRVLIKVTGKCTTDHI---------SAAGPWL----- 572
Query: 702 LKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYN 761
Y +G N LI + ++ Y G K +I
Sbjct: 573 ------KY-----------KGHLDNISNNTLIGAVNAETGEVN---KAYDLDGSKGTIPE 612
Query: 762 AAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGIL 821
A + + ++ A YG GS+R+ AA + LG +++I +SF RIH NL G+L
Sbjct: 613 LARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVL 672
Query: 822 PLQFLNN---DSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKL 874
PL F N D IQ + +L + K E +D + +KNG K+ +IKL
Sbjct: 673 PLTFANEADYDKIQPGDEV--ATLNLYEMLKNGGGGE-VDLRVTKKNG-KVFEIKL 724
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 193 bits (493), Expect = 3e-54
Identities = 144/452 (31%), Positives = 202/452 (44%), Gaps = 67/452 (14%)
Query: 118 EPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNV--IPP 175
+ VP + DH I+ + + +++ NKE Y F+ A K+ + P
Sbjct: 23 KVAVPSTIHCDHLIEA-----QVGGEKDLKRAKDINKEVYDFLA---SAGAKYGIGFWKP 74
Query: 176 GFGIVHQINLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGML 234
G GI+HQI LE N +P +++GTDSHT +G I GVGG +A M
Sbjct: 75 GSGIIHQIVLE----------NYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMA 124
Query: 235 GQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLP 294
G P P VIGV L GKL+ + D++L + +L K G VE+FG GV SL
Sbjct: 125 GIPWELKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCT 184
Query: 295 DRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEI 354
TI NM E GAT FP ++ Y TGR EI FK L
Sbjct: 185 GMGTICNMGAEIGATTSVFPYNERMKKYLKATGRA--EIADLADEFKDDLLVADE---GA 239
Query: 355 DYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIY 414
+Y +I +NL + P ++GP FT L P K
Sbjct: 240 EYDQLIEINLSELEPHINGP---------------FTPDLATPVSKFKEV---------- 274
Query: 415 ITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSR 474
KNG + D+ + I SCTN+S ++ +A +AK+A+ GL+ K + TPGS
Sbjct: 275 AEKNGWPL---DLRVGLIGSCTNSSYEDMGRAAS-IAKQALAHGLK--CKSIFTITPGSE 328
Query: 475 VVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNR 534
+ + GLL G ++A C CIG + + E N I+TS NR
Sbjct: 329 QIRATIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDIKKGE---KNTIVTSY----NR 381
Query: 535 NFESR--IHPSIYANFLASPPLVIAYAIAGNI 564
NF R +P+ +A F+ASP +V A AIAG +
Sbjct: 382 NFTGRNDANPATHA-FVASPEIVTAMAIAGTL 412
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Bacterial Aconitase-like catalytic domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This distinct subfamily is found only in
bacteria and Archaea. Its exact characteristics are not
known.
Length = 380
Score = 190 bits (485), Expect = 2e-53
Identities = 133/487 (27%), Positives = 199/487 (40%), Gaps = 119/487 (24%)
Query: 87 LLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIV---DHS-IQVDFFREKKSL 142
L QD TG AM V +L V DH+ +Q DF
Sbjct: 4 LTQDATGTMAYLQFEAMGV-------------DRVRTELSVSYVDHNTLQTDF------- 43
Query: 143 DLNMQLEFKRNKERYQFIKWGMQAFNKFNVI--PPGFGIVHQINLEYLSRGILNKDNIYY 200
N + ++F+ ++ + PG GI HQ++LE +
Sbjct: 44 ---------ENADDHRFL---QTVAARYGIYFSRPGNGICHQVHLERFAV---------- 81
Query: 201 P-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVT 259
P ++G+DSHT +G++ G GG++ M G+P Y +P V+GV L G+L VT
Sbjct: 82 PGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVT 141
Query: 260 ATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKIT 319
A D++L + + L K VGK E+ G GV +L +P+RATI+NM E GAT FP D+ T
Sbjct: 142 AKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERT 201
Query: 320 VNYFYNTGRNNL--EIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRP 377
+ GR + E+ A + +Y + I ++L + P ++ P+ P
Sbjct: 202 REFLAAQGREDDWVELAADA---------------DAEYDEEIEIDLSELEPLIARPHSP 246
Query: 378 QDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTN 437
+++ + V GIK+ AI SCTN
Sbjct: 247 DNVVPVREVA-------------------------------GIKVDQ-----VAIGSCTN 270
Query: 438 TSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIV 497
+S +LM A +L G + P + PGS+ V E L +G L L G I+
Sbjct: 271 SSYEDLMTVAAILK------GRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARIL 324
Query: 498 AYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIA 557
C CIG + S+ + NRNFE R +LASP + A
Sbjct: 325 ESACGPCIGMGQAPPTG-----------GVSVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373
Query: 558 YAIAGNI 564
A+ G I
Sbjct: 374 AALTGVI 380
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
type. This model represents a small family of proteins
homologous (and likely functionally equivalent to)
aconitase 1. Members are found, so far in the anaerobe
Clostridium acetobutylicum, in the microaerophilic,
early-branching bacterium Aquifex aeolicus, and in the
halophilic archaeon Halobacterium sp. NRC-1. No member
is experimentally characterized [Energy metabolism, TCA
cycle].
Length = 658
Score = 188 bits (478), Expect = 3e-50
Identities = 149/550 (27%), Positives = 232/550 (42%), Gaps = 124/550 (22%)
Query: 142 LDLNM-QLEFKRNKERYQFIKWGMQAFNKFNVI--PPGFGIVHQINLEYLSRGILNKDNI 198
D NM Q +F +N + ++F+ M A KF PG GI H ++ E N
Sbjct: 60 CDHNMLQFDF-KNADDHKFL---MSAAGKFGAWFSKPGNGICHNVHKE----------NF 105
Query: 199 YYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKG 257
P ++G+DSHT +G++ G GGI+ A M G+ Y +P+++GV+L G+L +
Sbjct: 106 AAPGKTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEW 165
Query: 258 VTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDK 317
TA D++L + + L K +GK E+FG+GV+ L +P+RATI+NM E GAT FP D
Sbjct: 166 ATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDD 225
Query: 318 ITVNYFYNTGRNN--LEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPN 375
IT + R + +++ A + +Y D I ++L ++ P ++ P+
Sbjct: 226 ITEAWLAAFDREDDFVDLLA---------------DADAEYADEIEIDLSDLEPLIAEPH 270
Query: 376 RPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSC 435
P +++ + + GI++ I SC
Sbjct: 271 MPDNVVPVREIA-------------------------------GIEVDQ-----VMIGSC 294
Query: 436 TNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFN 495
TN + +L+ +A LL G E+ + + PGS+ E + G L G N
Sbjct: 295 TNGAFEDLLPAAKLLE------GREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGAN 348
Query: 496 IVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLV 555
+ C CIG I ++ + S+ S NRNFE R +LASP
Sbjct: 349 FLEAACGACIG--------IGFAPASDGV---SLRSFNRNFEGRAGIEDAKVYLASPETA 397
Query: 556 IAYAIAGNILVDLTIEPLGIDKNGKKIYLNDI-WPSTEEINSLEKFTLNKNLFYFNYKNI 614
A AIAG I I+P + + D+ E F Y
Sbjct: 398 TAAAIAGEI-----IDPRDLADD-----EGDLEAIGFEMGEK----------FPGGYDAA 437
Query: 615 KNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDS 674
+ + D+I P I P +F+ +I+G AL I+ D+
Sbjct: 438 DIDI----IPKEEREDDDIIKGP---NIKPLP-------EFDPLGADIEGETAL-IMEDN 482
Query: 675 ITTDHISPAG 684
ITTDHI PAG
Sbjct: 483 ITTDHIIPAG 492
Score = 70.4 bits (172), Expect = 2e-12
Identities = 33/57 (57%), Positives = 39/57 (68%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDS 830
II AG+ YG GSSR+ AA LGV+ VIA+SF RIH ANL GILPL+F N +
Sbjct: 532 IIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEED 588
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the
isomerization between 2-isopropylmalate and
3-isopropylmalate. Aconatase-like catalytic domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes.
Length = 382
Score = 168 bits (428), Expect = 1e-45
Identities = 115/485 (23%), Positives = 189/485 (38%), Gaps = 108/485 (22%)
Query: 85 RILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDL 144
L+ D T P +R ++ +P+KI + DH++ K +
Sbjct: 1 LHLVHDVTS-PQA--FEGLREAGREKVWDPEKIV------AVFDHNVPTP--DIKAA--- 46
Query: 145 NMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP-DI 203
++ + N F+V GI H I E +G+ P
Sbjct: 47 EQVKTLRKFAKE--------FGINFFDV--GRQGICHVILPE---KGLTL------PGMT 87
Query: 204 IVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDL 263
IVG DSHT + G G+G + + ++F +P+ + VN+ GKL GVTA D+
Sbjct: 88 IVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDV 147
Query: 264 VLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYF 323
+L I + K +EF G+ ++SL + +R T+ NMA E GA G D+ T Y
Sbjct: 148 ILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYL 207
Query: 324 YNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKL 383
G+ +Y+K + + +Y ++ ++ + P ++ P+ P
Sbjct: 208 KGRGK---------AYWKE-----LKSDEDAEYDKVVEIDASELEPQVAWPHSP------ 247
Query: 384 NNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNL 443
+NV ++E+ I I + I SCTN +L
Sbjct: 248 DNVVP------------------VSEVEGIKIDQ------------VFIGSCTNGRLEDL 277
Query: 444 MLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCAT 503
+A +L + V ++ P S+ V + GL+ + G + GC
Sbjct: 278 RAAAEILKGRKVA------DGVRLIVVPASQRVYKQAEKEGLIEIFIEAGAEVRPPGCGA 331
Query: 504 CIG-NSGKIKSQIEEIIINNNIITSSILSGNRNFESRI-HPS--IYANFLASPPLVIAYA 559
C+G + G + E ++ TS NRNF+ R+ P IY LASP A A
Sbjct: 332 CLGGHMGVLAP--GERCVS----TS-----NRNFKGRMGSPGARIY---LASPATAAASA 377
Query: 560 IAGNI 564
I G I
Sbjct: 378 ITGEI 382
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino
acid transport and metabolism].
Length = 423
Score = 155 bits (394), Expect = 8e-41
Identities = 121/495 (24%), Positives = 197/495 (39%), Gaps = 109/495 (22%)
Query: 78 ELPLI-VTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFF 136
E L+ + L+ D T P +R +K+ ++P+K DH++
Sbjct: 23 ETVLLYIDLHLVHDVTS-PQA--FEGLREAGRKV-RDPEKTV------ATFDHNVPTP-- 70
Query: 137 REKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGF-GIVHQINLEYLSRGILNK 195
+ Q + R + K F N G GIVHQ+ E +G+
Sbjct: 71 ----DIKAAEQQKELR-----ENAK----EFGIVNFYDVGDQGIVHQVGPE---QGLTL- 113
Query: 196 DNIYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKL 254
P IVG DSHT + G +G+G + + ++F +P + V + GKL
Sbjct: 114 -----PGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKL 168
Query: 255 NKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFP 314
GVTA D++L + + G +EF G+ ++SL + R T+ NMA E GA G
Sbjct: 169 PPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIA 228
Query: 315 VDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGE-IDYTDIITLNLDNVSPSLSG 373
D+ T Y +K ++ K K E Y ++ L+ ++ P ++
Sbjct: 229 PDETTFEY----------LKEWDGAVAYWKTL---KSDEDAVYDKVVELDASDLEPQVAW 275
Query: 374 PNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAIT 433
P P +++ ++ V+ ++++++I G
Sbjct: 276 PTNPDNVVPVSEVEPDPI-----------------KIDQVFI---G-------------- 301
Query: 434 SCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLG 493
SCTN +L +A + +K G +++P ++ PGSR V E GL + G
Sbjct: 302 SCTNGRIEDLRAAA-----EILK-GRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAG 355
Query: 494 FNIVAYGCATCIG-NSGKIKSQIEEIIINNNIITSSILSGNRNFESRI-HPS--IYANFL 549
F GC C+G + G + E + TS NRNFE R P Y L
Sbjct: 356 FEWREPGCGPCLGMHPGVLGPG--ERCAS----TS-----NRNFEGRQGSPGARTY---L 401
Query: 550 ASPPLVIAYAIAGNI 564
ASP + A A+ G I
Sbjct: 402 ASPAMAAAAAVEGEI 416
>gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain. Members of
this family usually also match to pfam00330. This domain
undergoes conformational change in the enzyme mechanism.
Length = 131
Score = 143 bits (364), Expect = 3e-40
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 692 AGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQ 751
K+L GV +F S GT +N + N T +
Sbjct: 1 MPKFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGN------ILFDGWRANKTTHL 54
Query: 752 PSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIH 811
P+GE +AA +Y + ++ GK YG GSSR+ AA + LG+K VIA+SF RIH
Sbjct: 55 PTGENPDFVDAAERYKQHGAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIH 114
Query: 812 RANLIGMGILPLQFLN 827
R NLI G+LPL+F N
Sbjct: 115 RNNLIKNGLLPLEFPN 130
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
This subfamily is a subset of the larger HacA family
(Homoaconitate hydratase family, TIGR01343) and is most
closely related to the 3-isopropylmalate dehydratase,
large subunits which form TIGR00170. This subfamily
includes the members of TIGR01343 which are gene
clustered with other genes of leucine biosynthesis. The
rest of the subfamily includes mainly archaeal species
which exhibit two hits to this model. In these cases it
is possible that one or the other of the hits does not
have a 3-isopropylmalate dehydratase activity but rather
one of the other related aconitase-like activities.
Length = 412
Score = 141 bits (356), Expect = 6e-36
Identities = 99/395 (25%), Positives = 160/395 (40%), Gaps = 86/395 (21%)
Query: 176 GFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIE-AEAGML 234
G GI HQ+ +E G ++VG DSHT ++G G+G + A A
Sbjct: 93 GEGICHQVLVE---EGYAGPG-----MVVVGGDSHTCTSGAVGAFATGMGATDVAIALAT 144
Query: 235 GQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLP 294
G+ + +P+ I V + GK +GVTA D+ L I L +EFFG ++++ +
Sbjct: 145 GK-TWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMD 203
Query: 295 DRATISNMAPEYGATIGFFPVDKITVNYF-YNTGRNNLEIKAFESYFKSQKLFGIPKIGE 353
+R T+ NMA E GA G D+ T Y G ++
Sbjct: 204 ERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFRILRPDP---------------G 248
Query: 354 IDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKI 413
Y D I ++L ++ P ++ P+ ++ +++V+ +I++
Sbjct: 249 AKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEG----------------TEIDQ---- 288
Query: 414 YITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGS 473
I SCTN +L ++A +L G + P ++ P S
Sbjct: 289 ----------------VFIGSCTNGRIEDLRIAAEILE------GRRVHPDVRLIVVPAS 326
Query: 474 RVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIG-NSGKIKSQIEEIIINNNIITSSILSG 532
R V E G++L L + G I GC C+G + G ++ + + S +
Sbjct: 327 RKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMG--------VLGDGEVCVS---TT 375
Query: 533 NRNFESRI-HP--SIYANFLASPPLVIAYAIAGNI 564
NRNF R+ P IY LASP A A+ G I
Sbjct: 376 NRNFRGRMGSPDAEIY---LASPATAAASAVEGYI 407
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are
described by a separate model of subfamily (rather than
equivalog) homology type (TIGR01343). This model along
with TIGR00170 describe clades which consist only of
LeuC sequences. Here, the genes from Pyrococcus
furiosus, Clostridium acetobutylicum, Thermotoga
maritima and others are gene clustered with related
genes from the leucine biosynthesis pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 419
Score = 138 bits (348), Expect = 7e-35
Identities = 124/437 (28%), Positives = 186/437 (42%), Gaps = 84/437 (19%)
Query: 130 SIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLS 189
++ D F K + Q + R R Q I+ + N GI H
Sbjct: 59 ALVPDHFTPNKDIKSAEQCKMMREFAREQGIEKFFEIGN--------MGIEH-------- 102
Query: 190 RGILNKDNIYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGV 248
+L ++ I P D+I+G DSHT ++G GVG + GM +F +P+ I
Sbjct: 103 -ALLPEEGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKF 161
Query: 249 NLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGA 308
L GKL VT DL+L I ++ + K +EF G+G+K L + DR TI+NMA E GA
Sbjct: 162 VLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGA 221
Query: 309 TIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVS 368
G FPVD+IT+ Y G+ +I +K+ + + Y +I ++L +
Sbjct: 222 KTGIFPVDEITIEYEKGRGKREEKI------YKADE--------DAKYVRVIEIDLSELE 267
Query: 369 PSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDIL 428
P ++ P+ P++ KDI+E K IKI
Sbjct: 268 PQVAFPHLPEN------------------------TKDISE-----AGKEEIKIDQ---- 294
Query: 429 IAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLY 488
I SCTN +L L+A +L G ++P ++ PGS+ V GLL
Sbjct: 295 -VVIGSCTNGRLEDLRLAAEILK------GKTVAPDVRCIIIPGSQNVYLEAMKEGLLEI 347
Query: 489 LEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRI-HPSIYAN 547
+ G + C C+G I ++ E +I + NRNF R+ HP
Sbjct: 348 FIEAGAVVSTPTCGPCLGGHMGILAEGER----------AISTTNRNFVGRMGHPKSEV- 396
Query: 548 FLASPPLVIAYAIAGNI 564
+LASP + A AI G I
Sbjct: 397 YLASPAVAAASAIKGYI 413
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
Reviewed.
Length = 418
Score = 131 bits (333), Expect = 7e-33
Identities = 99/394 (25%), Positives = 169/394 (42%), Gaps = 84/394 (21%)
Query: 176 GFGIVHQINLEYLSRGILNKDNIYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGM- 233
G GI HQ+ E +G++ P D++VG DSHT ++G G+G + A M
Sbjct: 97 GEGICHQVLPE---KGLVR------PGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMA 147
Query: 234 LGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLL 293
G+ +F +P+ I V L GKL GVTA D++L I + K +EF G+ +++L +
Sbjct: 148 TGK-TWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSM 206
Query: 294 PDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGE 353
+R T++NMA E GA G F D+ T+ Y + + +KS + +
Sbjct: 207 DERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDYKP------WKSDE--------D 252
Query: 354 IDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKI 413
+Y ++ ++L + P ++ P+ P +NVK ++E+
Sbjct: 253 AEYEEVYEIDLSKLEPQVAAPHLP------DNVK------------------PVSEVEGT 288
Query: 414 YITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGS 473
+ I SCTN +L ++A +L + V P ++ P S
Sbjct: 289 KVD------------QVFIGSCTNGRLEDLRIAAEILKGRKVA------PGVRLIVIPAS 330
Query: 474 RVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGN 533
+ + GL+ G + C C+G + + E ++++ N
Sbjct: 331 QKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLAPGE------VCLSTT----N 380
Query: 534 RNFESRI-HPS--IYANFLASPPLVIAYAIAGNI 564
RNF+ R+ P +Y LASP + A A+ G I
Sbjct: 381 RNFKGRMGSPESEVY---LASPAVAAASAVTGKI 411
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This
model represents a subfamily of proteins consisting of
aconitase, homoaconitase, 3-isopropylmalate dehydratase,
and uncharacterized proteins. The majority of the
members of this family have been designated as
3-isopropylmalate dehydratase large subunit (LeuC) in
microbial genome annotation, but the only characterized
member is Thermus thermophilus homoaconitase, an enzyme
of a non-aspartate pathway of Lys biosynthesis.
Length = 412
Score = 129 bits (325), Expect = 5e-32
Identities = 113/487 (23%), Positives = 192/487 (39%), Gaps = 108/487 (22%)
Query: 83 VTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSL 142
+ + ++ D T PL I K +P++I ++VDH + K +
Sbjct: 25 IDQAMVHDITA-PLAIRRLEEYGIDKV--FDPERIV------IVVDHVVPAS--TIKAA- 72
Query: 143 DLNMQLEFKRNKERYQFIK-WGMQAFNKFNVIPPGFGIVHQINLE--YLSRGILNKDNIY 199
MQ K +F+K G++ F G GI HQ+ E + G
Sbjct: 73 --EMQ------KLAREFVKKTGIKHFF-----DVGEGICHQVLPEEGLVKPG-------- 111
Query: 200 YPDIIVGTDSHTTMINSIGVIGWGVGGIE-AEAGMLGQPIYFLIPDVIGVNLIGKLNKGV 258
D++VG DSHT ++G G+G + A A G+ +F +P+ + V L GKLN GV
Sbjct: 112 --DLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGK-TWFRVPESMKVTLTGKLNPGV 168
Query: 259 TATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKI 318
TA D++L + + +EF G+ +K++ + +R T++NMA E G G D+
Sbjct: 169 TAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPDEK 228
Query: 319 TVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQ 378
T Y + + + +Y + ++ + P ++ P+
Sbjct: 229 TRAYLKERYKEPFRV--------------YKSDEDAEYAKEVEIDASQLEPVVAAPHNV- 273
Query: 379 DLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNT 438
+NV ++E+ I + + I SCTN
Sbjct: 274 -----DNV------------------HPVSEVEGIEVDQ------------VFIGSCTNG 298
Query: 439 SNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVA 498
+L ++A +L + V P ++ P SR V GL+ K G +
Sbjct: 299 RIEDLRVAAKILKGRKVA------PDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVST 352
Query: 499 YGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRI-HPSIYANFLASPPLVIA 557
GC C+G + + E+ I+ + NRNF+ R+ P+ +LASP A
Sbjct: 353 PGCGPCLGRHQGVLAP-GEVCIS---------TSNRNFKGRMGDPNAEI-YLASPATAAA 401
Query: 558 YAIAGNI 564
A+ G I
Sbjct: 402 SAVKGRI 408
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase
catalytic domain. Homoaconitase and other
uncharacterized proteins of the Aconitase family.
Homoaconitase is part of an unusual lysine biosynthesis
pathway found only in filamentous fungi, in which lysine
is synthesized via the alpha-aminoadipate pathway. In
this pathway, homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases.
Length = 363
Score = 115 bits (289), Expect = 1e-27
Identities = 112/430 (26%), Positives = 182/430 (42%), Gaps = 104/430 (24%)
Query: 141 SLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVI---PPGFGIVHQINLEYLSRGILNKDN 197
+LD ++Q + ++N ++Y+ I ++F K + I P G GI HQI +E +
Sbjct: 32 TLDHDVQNKSEKNLKKYKNI----ESFAKKHGIDFYPAGRGIGHQIMIE---------EG 78
Query: 198 IYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNK 256
+P + V +DSH+ M +G +G + +A A ++ IP V V L G+L K
Sbjct: 79 YAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPK 138
Query: 257 GVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVD 316
GVT D+++ + L K V+ +EF G G+ SL + R TI+NM E+GA G FP D
Sbjct: 139 GVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD 198
Query: 317 KITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNR 376
++ L L+L +SP +SGPN
Sbjct: 199 -------------------------AKHLI---------------LDLSTLSPYVSGPNS 218
Query: 377 PQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCT 436
+K++ K+ + IKI A + SCT
Sbjct: 219 ----VKVSTPLKE-------------------------LEAQNIKINK-----AYLVSCT 244
Query: 437 NTSNPNLMLSAGLLAKKAVKFG-LEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFN 495
N+ ++ +A ++ K K G + ++P ++ S V +G L + G
Sbjct: 245 NSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGAT 304
Query: 496 IVAYGCATCIG-NSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPL 554
+ GC CIG G ++ E+ I + NRNF+ R+ + +LASP +
Sbjct: 305 PLPAGCGPCIGLGQGLLEPG--EV---------GISATNRNFKGRMGSTEALAYLASPAV 353
Query: 555 VIAYAIAGNI 564
V A AI+G I
Sbjct: 354 VAASAISGKI 363
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase is known only
as a fungal enzyme from two species, where it is part of
an unusual lysine biosynthesis pathway. Because This
model is based on just two sequences from a narrow
taxonomic range, it may not recognize distant orthologs,
should any exist. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain [Amino acid biosynthesis, Aspartate
family].
Length = 712
Score = 112 bits (281), Expect = 2e-25
Identities = 112/445 (25%), Positives = 189/445 (42%), Gaps = 78/445 (17%)
Query: 141 SLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVI---PPGFGIVHQINLEYLSRGILNKDN 197
+LD ++Q + +N ++Y+ I + F K + I P G GI HQI +E +
Sbjct: 65 TLDHDIQNKSDKNLKKYKNI----EEFAKKHGIDFYPAGRGIGHQIMIE---------EG 111
Query: 198 IYYP-DIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNK 256
+P ++ V +DSH+ M +G +G + +A A ++ IP V V G+L
Sbjct: 112 FAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPP 171
Query: 257 GVTATDLVLTITKLLRKKNVVGKFVEFFG--DGVKSLLLPDRATISNMAPEYGATIGFFP 314
GV+ D+++ + L K +V+ +EF G D + +L + R TI+NM E+GA G FP
Sbjct: 172 GVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGALSGLFP 231
Query: 315 VDKITVNYFYNT------GRNN--LEIKAFESYFKS--QKLFGIPKIGEID--YTDIITL 362
+DK +++ G + A E + ++ IP + D Y + +
Sbjct: 232 IDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEIPLKADKDAHYAKELFI 291
Query: 363 NLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKI 422
+L ++S +SGPN +K+ N K IK ++K Y
Sbjct: 292 DLASLSHYVSGPNS----VKVANPLKDLEAQDIK-------------IDKAY-------- 326
Query: 423 KNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGL---EISPKIKTSFTPGSRVVTEY 479
+ SCTN+ ++ +A + + A K G +I+P ++ S
Sbjct: 327 ---------LVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAA 377
Query: 480 LNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESR 539
+G L + G + GC CIG + E I + NRNF+ R
Sbjct: 378 AEGNGAWEKLLEAGAIPLPAGCGPCIGLGAGLLEPGE----------VGISASNRNFKGR 427
Query: 540 IHPSIYANFLASPPLVIAYAIAGNI 564
+ +LASP +V A A+ G I
Sbjct: 428 MGSKDAKAYLASPAVVAASALLGKI 452
Score = 35.0 bits (80), Expect = 0.23
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQ 824
I+ +G +G GSSR+ AA G+ +V++ SF I N I +L L+
Sbjct: 585 ILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLE 635
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Members of this family are 3-isopropylmalate
dehydratase, large subunit, or the large subunit domain
of single-chain forms. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures. All are dehydratases (EC 4.2.1.-) and bind a
Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase
is split into large (leuC) and small (leuD) chains in
eubacteria. Several pairs of archaeal proteins resemble
the leuC and leuD pair in length and sequence but even
more closely resemble the respective domains of
homoaconitase, and their identity is uncertain. These
homologs are now described by a separate model of
subfamily (rather than equivalog) homology type, and the
priors and cutoffs for this model have been changed to
focus this equivalog family more narrowly [Amino acid
biosynthesis, Pyruvate family].
Length = 465
Score = 103 bits (259), Expect = 3e-23
Identities = 112/462 (24%), Positives = 193/462 (41%), Gaps = 80/462 (17%)
Query: 127 VDHSIQV---DFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQI 183
+DH+I DF + + + + E ++N + + G++ F+ + GIVH +
Sbjct: 61 MDHNIPTQNRDFNIKDEVAKIQVT-ELEKNCKEF-----GVRLFD---LHSVDQGIVHVM 111
Query: 184 NLEYLSRGILNKDNIYYPDI-IVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLI 242
E + P + IV DSHT+ + G + +G+G E E + Q +
Sbjct: 112 GPE---------QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQAR 162
Query: 243 PDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNM 302
+ + + GKL G+TA D++L I G +EF G+ ++ L + R T+ NM
Sbjct: 163 AKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNM 222
Query: 303 APEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFE---SYFKSQKLFGIPKIGEIDYTDI 359
A E GA G D+ T Y + + K F+ +Y+K+ K + +
Sbjct: 223 AIEAGARAGLIAPDETTFEYCKGR-PHAPKGKEFDKAVAYWKTLKTDEGAV-----FDTV 276
Query: 360 ITLNLDNVSPSLSGPNRPQDLIKLNNV---KKKFTELLIKPTFKNGFNKDINELNKIYI- 415
ITL +++SP ++ P ++ +N+ + F + P K + + Y+
Sbjct: 277 ITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFAD----PVDKASAERALA-----YMG 327
Query: 416 TKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRV 475
+ G +K+ + I SCTN+ +L +A AV G +++ +K PGS +
Sbjct: 328 LEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA------AVIKGRKVADNVKALVVPGSGL 381
Query: 476 VTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITS---SILSG 532
V GL + GF GC+ C+G +NN+ + +
Sbjct: 382 VKLQAEKEGLDKIFIEAGFEWREPGCSMCLG-------------MNNDRLPEGERCASTS 428
Query: 533 NRNFE------SRIHPSIYANFLASPPLVIAYAIAGNILVDL 568
NRNFE R H L SP + A AI G+ VD+
Sbjct: 429 NRNFEGRQGRGGRTH-------LVSPAMAAAAAIHGH-FVDI 462
>gnl|CDD|238236 cd00404, Aconitase_swivel, Aconitase swivel domain. Aconitase
(aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. This is the aconitase swivel domain, which
undergoes swivelling conformational change in the enzyme
mechanism. The aconitase family contains the following
proteins: - Iron-responsive element binding protein
(IRE-BP). IRE-BP is a cytosolic protein that binds to
iron-responsive elements (IREs). IREs are stem-loop
structures found in the 5'UTR of ferritin, and delta
aminolevulinic acid synthase mRNAs, and in the 3'UTR of
transferrin receptor mRNA. IRE-BP also express aconitase
activity. - 3-isopropylmalate dehydratase
(isopropylmalate isomerase), the enzyme that catalyzes
the second step in the biosynthesis of leucine. -
Homoaconitase (homoaconitate hydratase), an enzyme that
participates in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 88
Score = 75.2 bits (185), Expect = 1e-16
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQS 833
++ + YGTGSSR+ AA +LLG + VIA+SF RI NL+ G+LPL+F + +
Sbjct: 18 VVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLK 77
Query: 834 LNITGNEY 841
L+ TG+E
Sbjct: 78 LH-TGDEL 84
Score = 29.7 bits (67), Expect = 1.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 670 ILGDSITTDHISPAG 684
+ +ITTDHISPAG
Sbjct: 1 KVAGNITTDHISPAG 15
>gnl|CDD|238811 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This is the aconitase-like swivel domain,
which is believed to undergo swivelling conformational
change in the enzyme mechanism. This distinct subfamily
is found only in bacteria and archea. Its exact
characteristics are not known.
Length = 121
Score = 75.9 bits (187), Expect = 2e-16
Identities = 32/58 (55%), Positives = 38/58 (65%)
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNND 829
I G+ YG GSSR+ AA LGV+ V+A+SF RIHRANLI GILPL F + D
Sbjct: 49 PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADED 106
Score = 32.4 bits (74), Expect = 0.26
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 670 ILGDSITTDHISPAG 684
+GD+ITTDHI PAG
Sbjct: 1 KVGDNITTDHIMPAG 15
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 80.7 bits (200), Expect = 9e-16
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Query: 126 IVDHSIQVDFFREKKSLD---LNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQ 182
+VDH + R++ D + N + I+ F+V P GIVH
Sbjct: 61 VVDHVVPTRPGRDRGITDPGGALQVDYLRENCADFG-IRL-------FDVDDPRQGIVHV 112
Query: 183 INLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFL 241
+ E G+ P +IV DSHTT ++G + +G+G E E + Q + +
Sbjct: 113 VAPE---LGLT------LPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYR 163
Query: 242 IPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISN 301
P + V + G+L GVTA DL+L + + G +EF G+ +++L + R T+ N
Sbjct: 164 KPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCN 223
Query: 302 MAPEYGATIGFFPVDKITVNY 322
MA E GA G D+ T +Y
Sbjct: 224 MAVEAGARGGLIAPDETTFDY 244
Score = 43.4 bits (103), Expect = 4e-04
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 432 ITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEK 491
I SCTN +L +A +L G +++P ++ PGS V GL
Sbjct: 346 IGSCTNGRIEDLRAAAAVLR------GRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIA 399
Query: 492 LGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITS---SILSGNRNFE------SRIHP 542
GF GC+ C+ +N++++ + NRNFE +R H
Sbjct: 400 AGFEWREPGCSMCLA-------------MNDDVLAPGERCASTTNRNFEGRQGPGARTH- 445
Query: 543 SIYANFLASPPLVIAYAIAGNI 564
L SP +V A A+AG+I
Sbjct: 446 ------LMSPAMVAAAAVAGHI 461
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 70.5 bits (174), Expect = 1e-12
Identities = 103/387 (26%), Positives = 163/387 (42%), Gaps = 72/387 (18%)
Query: 204 IVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDL 263
IV DSHT+ + G + +G+G E E + Q + P + + + GKL GVTA D+
Sbjct: 124 IVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDI 183
Query: 264 VLTITKLLRKKNV---VGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITV 320
+L I + K G +EF G+ +++L + R TI NM+ E GA G D+ T
Sbjct: 184 ILAI---IGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTF 240
Query: 321 NYFYNTGR----NNLEIKAFESYFKSQKLFGIPKIGEID----YTDIITLNLDNVSPSLS 372
Y GR + +Y+K+ K D + ++TL+ ++ P ++
Sbjct: 241 E--YLKGRPFAPKGEDWDKAVAYWKTLK---------SDEDAVFDKVVTLDAADIEPQVT 289
Query: 373 -GPNRPQDLIKLNNV---KKKFTELLIKPTFKNGFNKDINELNKIYIT-KNGIKIKNGDI 427
G N P +I ++ + F + + + + + Y+ K G I + I
Sbjct: 290 WGTN-PGQVISIDGKVPDPEDFADPVKRASAERALA---------YMGLKPGTPITDIKI 339
Query: 428 LIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLL 487
I SCTN+ +L +A VK G +++P ++ PGS +V GL
Sbjct: 340 DKVFIGSCTNSRIEDLRAAA-----AVVK-GRKVAPGVRALVVPGSGLVKAQAEAEGLDK 393
Query: 488 YLEKLGFNIVAYGCATCIG-NSGKIKSQIEEIIINNNIITSSILSGNRNFE------SRI 540
+ GF GC+ C+ N K+ E + TS NRNFE R
Sbjct: 394 IFIEAGFEWREPGCSMCLAMNPDKLPPG--ERCAS----TS-----NRNFEGRQGKGGRT 442
Query: 541 HPSIYANFLASPPLVIAYAIAGNILVD 567
H L SP + A AI G+ VD
Sbjct: 443 H-------LVSPAMAAAAAITGHF-VD 461
>gnl|CDD|238810 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel
domain. Aconitase (also known as aconitate hydratase and
citrate hydro-lyase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. This is the aconitase swivel domain, which
undergoes swivelling conformational change in the enzyme
mechanism. In eukaryotes two isozymes of aconitase are
known to exist: one found in the mitochondrial matrix
and the other found in the cytoplasm. This is the
mitochondrial form. The mitochondrial product is coded
by a nuclear gene. Most members of this subfamily are
mitochondrial but there are some bacterial members.
Length = 149
Score = 64.4 bits (157), Expect = 4e-12
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 35/153 (22%)
Query: 676 TTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGT-FSNKRIKNLIT 734
TTDHIS AG WL G L + N+ +I N + ++
Sbjct: 7 TTDHISAAG---------PWLKYRGHLDNISNNL---------LIGAINAENGKANSV-- 46
Query: 735 ILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGT 794
KN Q +GE + + A Y ++ I ++ + YG GSSR+ AA
Sbjct: 47 ---KN-----------QVTGEYGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEP 92
Query: 795 KLLGVKMVIARSFERIHRANLIGMGILPLQFLN 827
+ LG + +I +SF RIH NL G+LPL F +
Sbjct: 93 RHLGGRAIITKSFARIHETNLKKQGLLPLTFAD 125
>gnl|CDD|238809 cd01577, IPMI_Swivel, Aconatase-like swivel domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is also
found in eukaryotes. This is the aconitase-like swivel
domain, which is believed to undergo swivelling
conformational change in the enzyme mechanism.
Length = 91
Score = 56.4 bits (137), Expect = 7e-10
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPL 823
II AGK +G GSSR+ A K G++ VIA SF RI N I G+LP+
Sbjct: 18 GDIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPV 69
>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit;
Provisional.
Length = 166
Score = 57.5 bits (139), Expect = 2e-09
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQ 824
I+ AG+ +G GSSR++A + K+LG+ +IA+S+ RI NL+ +GI P +
Sbjct: 52 ILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFE 102
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
Length = 751
Score = 60.4 bits (147), Expect = 3e-09
Identities = 93/388 (23%), Positives = 156/388 (40%), Gaps = 61/388 (15%)
Query: 163 GMQAFNKFNVI--PPGFGIVHQINLEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVI 220
G+ A K+ I PP ++HQ E ++ G +I+G+DSHT ++G +
Sbjct: 111 GLSAAQKYGGIFVPPHIAVIHQYMREMMAGG---------GKMILGSDSHTRY-GALGTM 160
Query: 221 GWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVV-GK 279
G GG E +L P V+ V L GK GV D+ L I + K V K
Sbjct: 161 AVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNK 220
Query: 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESY 339
+EF G GV +L R + M E + D+ N+ GR + Y
Sbjct: 221 VMEFVGPGVSALSTDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRG-------QDY 273
Query: 340 FKSQKLFGIPKIGEIDYTD-IITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTELL--IK 396
+L + Y D I+++L + P ++ P P ++ +++ + + T++L ++
Sbjct: 274 ---CEL----NPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREVE 326
Query: 397 PTFKNGFNKDINELNKIYITKNGIKIKNGDILI--AAITSCTNTSNPNLMLSAGLLAKKA 454
+ + K+ + KI+NG + + I C+ + N++ +A L ++
Sbjct: 327 IESERVAHGKA----KLSLLD---KIENGRLKVQQGIIAGCSGGNYENVIAAANALRGQS 379
Query: 455 V---KFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKI 511
F L S P S+ V L G++ L G I C C G +G
Sbjct: 380 CGNDTFSL--------SVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFG-AGDT 430
Query: 512 KSQIEEIIINNNIITSSILSGNRNFESR 539
+ NN + SI RNF +R
Sbjct: 431 PA-------NNGL---SIRHTTRNFPNR 448
Score = 44.2 bits (105), Expect = 3e-04
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 771 ISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFE-RIHRANLIGMGILPLQFLNND 829
I ++++A K G GS+R+ AA ++LG IA + + +R+N+I G+LP Q
Sbjct: 628 IGSMVYAVKP-GDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP 686
Query: 830 SIQSLNITGNEYFDLKGISKKIK-PLEKID-FIIYRKNGKKIKKIKLLLRIDTPME---- 883
+ + +Y + GI + P ++I + +I L + T E
Sbjct: 687 TFEVG-----DYIYIPGIRAALDNPGTTFKGYVI--HEDAPVTEITLYMESLTAEEREII 739
Query: 884 -----IKYYQND 890
I Y +N
Sbjct: 740 KAGCLINYNKNR 751
>gnl|CDD|234762 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit;
Reviewed.
Length = 163
Score = 54.4 bits (132), Expect = 2e-08
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 32/134 (23%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQS 833
II AGK +G GSSR+ A K GV VIA+SF RI N I +G LP+
Sbjct: 51 IIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIG-LPV---------- 99
Query: 834 LNITGNEYFDLKGISKKIK---PLEKIDF----IIYRKNGKKIKKIKLLLRIDTPMEIKY 886
+ KI+ +E +D I G++ K + ++
Sbjct: 100 --------LECDEAVDKIEDGDEVE-VDLETGVITNLTTGEEYKFKPI-----PEFMLEI 145
Query: 887 YQNDGILPFVLREL 900
+ G++ ++ ++
Sbjct: 146 LKAGGLIEYLKKKG 159
>gnl|CDD|223144 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino
acid transport and metabolism].
Length = 191
Score = 54.9 bits (133), Expect = 2e-08
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 773 TIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPL 823
I+ AG+ +G GSSR+ A K G++ VIA SF I N I G+LP+
Sbjct: 64 DILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPI 114
>gnl|CDD|233716 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit.
This subfamily is most closely related to the
3-isopropylmalate dehydratase, small subunits which form
TIGR00171. This subfamily includes the members of
TIGR02084 which are gene clustered with other genes of
leucine biosynthesis. The rest of the subfamily includes
mainly archaeal species which exhibit two hits to this
model. In these cases it is possible that one or the
other of the hits does not have a 3-isopropylmalate
dehydratase activity but rather one of the other related
aconitase-like activities.
Length = 154
Score = 53.2 bits (128), Expect = 3e-08
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQ 832
+I AGK +G GSSR+ AA K G+ VIA SF RI N I +G LPL + I+
Sbjct: 50 VIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIG-LPLIEAKTEGIK 107
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of
cis-aconitate from citrate as part of the TCA cycle.
Aconitase B catalytic domain. Aconitate hydratase B
catalyses the formation of cis-aconitate from citrate as
part of the TCA cycle. Aconitase has an active (4FE-4S)
and an inactive (3FE-4S) form. The active cluster is
part of the catalytic site that interconverts citrate,
cis-aconitase and isocitrate. The domain architecture of
aconitase B is different from other aconitases in that
the catalytic domain is normally found at C-terminus for
other aconitases, but it is at N-terminus for B family.
It also has a HEAT domain before domain 4 which plays a
role in protein-protein interaction. This alignment is
the core domain including domains 1,2 and 3.
Length = 436
Score = 50.2 bits (120), Expect = 4e-06
Identities = 96/422 (22%), Positives = 153/422 (36%), Gaps = 108/422 (25%)
Query: 175 PGFGIVHQINLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVG-GIEAEAG 232
PG G++H +L+R +L PD + G DSHT IG I + G G+ A A
Sbjct: 91 PGDGVIHS----WLNRMLL-------PDTVGTGGDSHTRF--PIG-ISFPAGSGLVAFAA 136
Query: 233 MLGQPIYFLIPDVIGVNLIGKLNKGVTATDLV------------LTITKLLRKKNVV-GK 279
G + +P+ + V GK+ G+T DLV LT+ K KKNV G+
Sbjct: 137 ATGV-MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEK-KGKKNVFNGR 194
Query: 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESY 339
+E +G+ L + +++ + E A +DK V + + ++I Y
Sbjct: 195 ILEI--EGLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGY 252
Query: 340 FKSQKL----------FGIPKIGEID----YTDIITLNLDNVS-PSLSGPNRPQDLIKLN 384
++ L P + E D Y +I ++LD++ P L+ PN P D+ L+
Sbjct: 253 DDARTLLRRIIAMEEWLANPPLLEPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLS 312
Query: 385 NVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLM 444
V K + F I SC M
Sbjct: 313 EVAGKKIDE--------VF----------------------------IGSC--------M 328
Query: 445 LSAGLLAKKAVKFGLEISPKIKTSF--TPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCA 502
+ G +A L T P +R+ L G G GC+
Sbjct: 329 TNIGHF--RAAAKILRGKEFKPTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCS 386
Query: 503 TCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAG 562
C+GN ++ + ++S RNF++R+ +L S L A+ G
Sbjct: 387 LCMGNQARVAD-------GATVFSTS----TRNFDNRVGKGAEV-YLGSAELAAVCALLG 434
Query: 563 NI 564
I
Sbjct: 435 RI 436
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion].
Length = 852
Score = 49.4 bits (118), Expect = 9e-06
Identities = 93/421 (22%), Positives = 158/421 (37%), Gaps = 105/421 (24%)
Query: 175 PGFGIVHQINLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVG-GIEAEAG 232
PG G++H +L+R +L PD + G DSHT IG I + G G+ A A
Sbjct: 465 PGDGVIHS----WLNRMLL-------PDTVGTGGDSHTRF--PIG-ISFPAGSGLVAFAA 510
Query: 233 MLGQ-PIYFLIPDVIGVNLIGKLNKGVTATDLV------------LTITKLLRKKNVV-G 278
G P+ +P+ + V G++ G+T DLV LT+ K KKN+ G
Sbjct: 511 ATGVMPLD--MPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEK-KGKKNIFSG 567
Query: 279 KFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFES 338
+ +E +G+ L + +++ + E A ++K + + + L+ E
Sbjct: 568 RILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEG 625
Query: 339 YFKSQKLFGI----------PKIGEID----YTDIITLNLDNVS-PSLSGPNRPQDLIKL 383
Y ++ L P++ E D Y +I ++L ++ P L+ PN P D+
Sbjct: 626 YGDARTLERRIDKMEAWLANPELLEADADAEYAAVIEIDLADIKEPILAAPNDPDDV--- 682
Query: 384 NNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNL 443
+ +E+ I+E I SC T+ +
Sbjct: 683 ----RLLSEVAGDK---------IDE--------------------VFIGSCM-TNIGHF 708
Query: 444 MLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCAT 503
+ LL + + P +++ L G K G I GC+
Sbjct: 709 RAAGKLLENAKGEL------PTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSL 762
Query: 504 CIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGN 563
C+GN ++ + ++S RNF +R+ +LAS L AI G
Sbjct: 763 CMGNQARVAD-------GATVFSTS----TRNFPNRLGKGA-NVYLASAELAAVCAILGK 810
Query: 564 I 564
I
Sbjct: 811 I 811
>gnl|CDD|131139 TIGR02084, leud, 3-isopropylmalate dehydratase, small subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. The members of the seed for
this model are those sequences which are gene clustered
with other genes involved in leucine biosynthesis and
include some archaea [Amino acid biosynthesis, Pyruvate
family].
Length = 156
Score = 44.0 bits (104), Expect = 6e-05
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGI 820
II AG+ +G GSSR+ A K G+ VIA+SF RI N I +G+
Sbjct: 50 IIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL 96
>gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit;
Provisional.
Length = 200
Score = 43.6 bits (104), Expect = 2e-04
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 773 TIIFAGKEYGTGSSRD---WAAKGTKLL--GVKMVIARSFERIHRANLIGMGILPLQFLN 827
+I+ AG +G GSSR+ WA L G + VIA SF I N G+LP+ L
Sbjct: 69 SILLAGDNFGCGSSREHAPWA-----LADYGFRAVIAPSFADIFYNNCFKNGLLPIV-LP 122
Query: 828 NDSIQSL 834
+ + L
Sbjct: 123 EEDVDEL 129
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase
(aconitase) is an enzyme of the TCA cycle. This model
describes aconitase 2, AcnB, which has weak similarity
to aconitase 1. It is found almost exclusively in the
Proteobacteria [Energy metabolism, TCA cycle].
Length = 844
Score = 44.1 bits (104), Expect = 4e-04
Identities = 94/423 (22%), Positives = 158/423 (37%), Gaps = 110/423 (26%)
Query: 175 PGFGIVHQINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIGVIGWGVGGIEAEAGM 233
PG G++H +L+R +L PD + G DSHT +G+ G+ A A
Sbjct: 464 PGDGVIHS----WLNRMLL-------PDTVGTGGDSHTRF--PLGISFPAGSGLVAFAAA 510
Query: 234 LG-QPIYFLIPDVIGVNLIGKLNKGVTATDLV------------LTITKLLRKKNVV-GK 279
G P+ +P+ + V G++ G+T DLV LT+ K KKNV G+
Sbjct: 511 TGVMPLD--MPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEK-KGKKNVFNGR 567
Query: 280 FVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESY 339
+E +G+ L + +++ + E A ++K + + N+ L+ E Y
Sbjct: 568 ILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGY 625
Query: 340 ----------FKSQKLFGIPKIGEID----YTDIITLNLDNVS-PSLSGPNRPQDLIKLN 384
+K P++ E D Y +I ++L + P L+ PN P D+ L+
Sbjct: 626 GDRRTLERRIQGMEKWLANPELLEADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLS 685
Query: 385 NVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLM 444
V+ I F I SC +N
Sbjct: 686 EVQGD----KIDEVF--------------------------------IGSC--MTNIGHF 707
Query: 445 LSAGLLAKKAVKFGLEISPKIKTSF--TPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCA 502
+AG + L+ + ++ T P +R+ + L G G GC+
Sbjct: 708 RAAGKI--------LDAAGQLPTRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGCS 759
Query: 503 TCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYAN-FLASPPLVIAYAIA 561
C+GN ++ + ++S RNF +R+ AN +L S L A+
Sbjct: 760 LCMGNQARVAD-------GATVFSTS----TRNFPNRMGTG--ANVYLGSAELAAVCALL 806
Query: 562 GNI 564
G I
Sbjct: 807 GKI 809
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
Length = 938
Score = 43.8 bits (103), Expect = 4e-04
Identities = 73/318 (22%), Positives = 117/318 (36%), Gaps = 93/318 (29%)
Query: 122 PVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVH 181
PVD++ H++ DF R + + L PG G++H
Sbjct: 514 PVDVVTHHTLP-DFIRNRGGVSLR-----------------------------PGDGVIH 543
Query: 182 QINLEYLSRGILNKDNIYYPDII-VGTDSHTTMINSIGV---IGWGVGGIEAEAGMLGQP 237
+L+R +L PD + G DSHT IG+ G G+ A G+
Sbjct: 544 S----WLNRMLL-------PDTVGTGGDSHTRF--PIGISFPAGSGLVAFGAATGV---- 586
Query: 238 IYFLIPDVIGVNLIGKLNKGVTATDLV------------LTITKLLRKKNVVGKFVEFFG 285
I +P+ + V G + G+T DLV LT+ K +K G+ +E
Sbjct: 587 IPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI-- 644
Query: 286 DGVKSLLLPDRATISNMAPEYGATIGFFPVDKITVNYFYNTG--------------RNNL 331
+G+ L +S+ + E A +DK + + N+ R L
Sbjct: 645 EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTL 704
Query: 332 E--IKAFESYFKSQKLFGIPKIGEID----YTDIITLNLDNVS-PSLSGPNRPQDLIKLN 384
E I + + P++ E D Y +I +++D + P L PN P D L+
Sbjct: 705 ERRIARMQQWLAD------PELLEADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLS 758
Query: 385 NVK-KKFTELLIKPTFKN 401
V K E+ I N
Sbjct: 759 EVTGDKIDEVFIGSCMTN 776
>gnl|CDD|129275 TIGR00171, leuD, 3-isopropylmalate dehydratase, small subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. The candidate archaeal leuD
proteins are not included in the seed alignment for this
model and score below the trusted cutoff [Amino acid
biosynthesis, Pyruvate family].
Length = 188
Score = 39.8 bits (93), Expect = 0.002
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSI 831
++I+ A + +G GSSR+ A G K++IA SF I N G+LP++ ++
Sbjct: 70 ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVK 129
Query: 832 QSLNITGNE 840
+ N+
Sbjct: 130 ELFGQVENQ 138
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase
2/2-methylisocitrate dehydratase; Validated.
Length = 835
Score = 40.5 bits (96), Expect = 0.004
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 175 PGFGIVHQINLEYLSRGILNKDNIYYPD-IIVGTDSHTTMINSIGVIGWGVG-GIEAEAG 232
PG G++H L+R +L PD + G DSHT IG I + G G+ A A
Sbjct: 463 PGDGVIHSW----LNRMLL-------PDTVGTGGDSHTRF--PIG-ISFPAGSGLVAFAA 508
Query: 233 MLG-QPIYFLIPDVIGVNLIGKLNKGVTATDLVLTI 267
G P+ +P+ + V G++ G+T DLV I
Sbjct: 509 ATGVMPLD--MPESVLVRFKGEMQPGITLRDLVHAI 542
>gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional.
Length = 119
Score = 37.0 bits (85), Expect = 0.009
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 784 GSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNN--DSIQSLNITGNEY 841
GSSR+ AA G K+VIA SF IH N + G+LP+ + + L T
Sbjct: 3 GSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVT 62
Query: 842 FDLKGISKKIKPLEKIDFII 861
DL+ K I P+E+ F I
Sbjct: 63 VDLEQ-QKIISPVEEFTFEI 81
>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
subunit; Provisional.
Length = 246
Score = 37.5 bits (87), Expect = 0.018
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 773 TIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMG-ILPLQ 824
+II G+ +G GSSR+ A G K V+A S+ RI N + G + PL+
Sbjct: 131 SIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLE 183
>gnl|CDD|238837 cd01674, Homoaconitase_Swivel, Homoaconitase swivel domain. This
family includes homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase is part
of an unusual lysine biosynthesis pathway found only in
filamentous fungi, in which lysine is synthesized via
the alpha-aminoadipate pathway. In this pathway,
homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases. This is the swivel domain, which is
believed to undergo swivelling conformational change in
the enzyme mechanism.
Length = 129
Score = 35.0 bits (80), Expect = 0.050
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQ 824
I+ +G +GTGSSR+ AA G+ +V++ SF I N I +L ++
Sbjct: 48 ILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIE 98
>gnl|CDD|238691 cd01397, HAT_MBD, Methyl-CpG binding domains (MBD) present in
putative chromatin remodelling factor such as BAZ2A;
BAZ2A contains a MBD, DDT, PHD-type zinc finger and
Bromo domain suggesting that BAZ2A might be associated
with histone acetyltransferase (HAT) activity. The
Drosophila melanogaster toutatis protein, a putative
subunit of the chromatin-remodeling complex, and other
such proteins in this group share a similar domain
architecture with BAZ2A, as does the Caenorhabditis
elegans flectin homolog.
Length = 73
Score = 33.1 bits (76), Expect = 0.064
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 726 NKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNN 770
RI+ L +I+G YY P G+K+ Y +KY+S N
Sbjct: 13 ETRIRGL-------GGRIQGEVAYYAPCGKKLRQYPEVIKYLSKN 50
>gnl|CDD|220326 pfam09643, YopX, YopX protein. YopX is a protein that is largely
helical, with three identical chains probably complexing
into a twelve-chain structure.
Length = 121
Score = 31.6 bits (72), Expect = 0.51
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 576 DKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYF-NYKNIKNNPGKLWSNISD-TVIDNI 633
DKNGK+IY DI T + + F + N LW ++ VI NI
Sbjct: 54 DKNGKEIYEGDIVKVTSGDVYMVVVKFSDGKFGIVVINDDYNVLLLLWVENANIEVIGNI 113
Query: 634 Y 634
Y
Sbjct: 114 Y 114
>gnl|CDD|223254 COG0176, MipB, Transaldolase [Carbohydrate transport and
metabolism].
Length = 239
Score = 31.9 bits (73), Expect = 1.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 438 TSNPNLMLSAGLLAKKAVKFGLEISPKIK 466
T+NP+L+L AG + AV+FG EI +
Sbjct: 33 TTNPSLILKAGAKPRDAVEFGKEILKIVP 61
>gnl|CDD|183373 PRK11906, PRK11906, transcriptional regulator; Provisional.
Length = 458
Score = 32.0 bits (72), Expect = 1.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 21/72 (29%)
Query: 587 IWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPIST------ 640
I+P T +N+L+ LN+ L IS+ ID +Y +P++
Sbjct: 122 IFPFTTSLNTLDPLILNQELV---------------QIISNKKIDGLYTYPMAATNFCND 166
Query: 641 YISQPPFFNNFK 652
+ISQ F + FK
Sbjct: 167 HISQNSFLSRFK 178
>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent,
prokaryotic type. Several NAD- or NADP-dependent
dehydrogenases, including 3-isopropylmalate
dehydrogenase, tartrate dehydrogenase, and the
multimeric forms of isocitrate dehydrogenase, share a
nucleotide binding domain unrelated to that of lactate
dehydrogenase and its homologs. These enzymes
dehydrogenate their substates at a H-C-OH site adjacent
to a H-C-COOH site; Prokaryotic NADP-dependent
isocitrate dehydrogenases resemble their NAD-dependent
counterparts and 3-isopropylmalate dehydrogenase (an
NAD-dependent enzyme) more closely than they resemble
eukaryotic NADP-dependent isocitrate dehydrogenases
[Energy metabolism, TCA cycle].
Length = 416
Score = 31.3 bits (71), Expect = 2.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 831 IQSLNITGNEYFDL----------KGISKKIKPLEKIDFIIYRKNGKKI 869
I+SLN+ + DL KG+ +K EK+D +I+R+N + I
Sbjct: 111 IRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDI 159
>gnl|CDD|216497 pfam01429, MBD, Methyl-CpG binding domain. The Methyl-CpG binding
domain (MBD) binds to DNA that contains one or more
symmetrically methylated CpGs. DNA methylation in
animals is associated with alterations in chromatin
structure and silencing of gene expression. MBD has
negligible non-specific affinity for DNA. In vitro
foot-printing with MeCP2 showed the MBD can protect a 12
nucleotide region surrounding a methyl CpG pair. MBDs
are found in several Methyl-CpG binding proteins and
also DNA demethylase.
Length = 75
Score = 28.5 bits (64), Expect = 2.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 749 YYQPSGEKMSIYNAAMKYISNNIST 773
YY P+G+K + ++Y+ N T
Sbjct: 34 YYSPTGKKFRSKSELIRYLEKNGDT 58
>gnl|CDD|232868 TIGR00196, yjeF_cterm, yjeF C-terminal region, hydroxyethylthiazole
kinase-related. E. coli yjeF has full-length orthologs
in a number of species, all of unknown function.
However, yeast YNL200C is homologous and corresponds to
the N-terminal region while yeast YKL151C and B.
subtilis yxkO correspond to this C-terminal region only
[Unknown function, General].
Length = 271
Score = 30.8 bits (70), Expect = 3.2
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 89 QDFTGIPLLTDLAAMRSIAKKIN-----KNPKKIEPLVPVDLIVDHSIQVDFFREKKSLD 143
D++G PLL LAA+R+ A + I + P +LIV R +D
Sbjct: 34 DDYSGAPLLAALAALRAGAGLVTVAAPENVITLINSVSP-ELIV--------HRLGWKVD 84
Query: 144 LNMQLEFKRNKERYQFIKWGM 164
+ +L ERY + G
Sbjct: 85 EDEELL-----ERYDVVVIGP 100
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 30.3 bits (68), Expect = 3.8
Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 49/148 (33%)
Query: 742 QIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKM 801
+IE YY GEK ++ N MK N I+ II G G K
Sbjct: 5 EIENFSAYY---GEKKAVKNVTMKIFKNQITAIIGPS---GCG---------------KT 43
Query: 802 VIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFII 861
+ RS R+ ND I + G YF + I ++D
Sbjct: 44 TLLRSINRM-----------------NDHIPGFRVEGKIYFKGQDIYD-----PQLDVTE 81
Query: 862 YRKNGKKIKKIKLLLRIDTPMEIKYYQN 889
YR KK+ ++ + TP + Y N
Sbjct: 82 YR------KKVGMVFQKPTPFPMSIYDN 103
>gnl|CDD|114461 pfam05736, OprF, OprF membrane domain. This domain represents the
presumed membrane spanning region of the OprF proteins.
This region is involved in channel formation and is
thought to form an 8-stranded beta-barrel.
Length = 184
Score = 29.8 bits (67), Expect = 4.8
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 306 YGATIGFFPVDKITVNYFY--------NTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYT 357
G +IG+F D + +N Y G N ++ + +Q FG P G Y
Sbjct: 53 PGGSIGYFLTDDVELNLSYDETHDTRSTDGTGNQKVGGDLTSLDAQYHFGTPGDGLRPYV 112
Query: 358 D--IITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTE 392
++ NV+ G ++ K FTE
Sbjct: 113 SAGFAHQSITNVADGSQGRDQSTFANIGAGAKYYFTE 149
>gnl|CDD|233521 TIGR01671, phage_TIGR01671, phage uncharacterized protein
TIGR01671. This model represents an uncharacterized,
well-conserved family of proteins found in bacteriophage
and prophage regions of Gram-positive bacteria [Mobile
and extrachromosomal element functions, Prophage
functions, Hypothetical proteins, Conserved].
Length = 151
Score = 28.4 bits (63), Expect = 9.8
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 19/78 (24%)
Query: 576 DKNGKKIYLNDI-------WPSTEEINSLEKFTLN---KNLFYFNYKNIKNNPG--KLWS 623
DKNGK+I+ DI WP +E + K+ + I + LW
Sbjct: 65 DKNGKEIFEGDIVQVVLEIWPMEDEYIGVVKYDTDFCTVPDVIDGSWIIDTDSEDFDLWL 124
Query: 624 NISD-------TVIDNIY 634
VI NI+
Sbjct: 125 YFDASVDSAAMEVIGNIH 142
>gnl|CDD|119364 cd06547, GH85_ENGase, Endo-beta-N-acetylglucosaminidase (ENGase)
hydrolyzes the N-N'-diacetylchitobiosyl core of
N-glycosylproteins. The beta-1,4-glycosyl bond located
between two N-acetylglucosamine residues is hydrolyzed
such that N-acetylglucosamine 1 remains with the protein
and N-acetylglucosamine 2 forms the reducing end of the
released glycan. ENGase is a key enzyme in the
processing of free oligosaccharides in the cytosol of
eukaryotes. Oligosaccharides formed in the lumen of the
endoplasmic reticulum are transported into the cytosol
where they are catabolized by cytosolic ENGases and
other enzymes, possibly to maximize the reutilization of
the component sugars. ENGases have an eight-stranded
alpha/beta barrel topology and are classified as a
family 85 glycosyl hydrolase (GH85) domain. The GH85
ENGases are sequence-similar to the family 18 glycosyl
hydrolases, also known as GH18 chitinases. An
ENGase-like protein is also found in bacteria and is
included in this alignment model.
Length = 339
Score = 29.2 bits (66), Expect = 9.8
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 598 EKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNF 651
+ F N++ F + N K WS ++ V P + I+ PF NF
Sbjct: 253 DFFVKNESRFGESGDPFLTNDDKFWSGLATYV-------PEKSPITSLPFVTNF 299
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.140 0.405
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,843,313
Number of extensions: 5026684
Number of successful extensions: 4731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4601
Number of HSP's successfully gapped: 116
Length of query: 903
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 797
Effective length of database: 6,236,078
Effective search space: 4970154166
Effective search space used: 4970154166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.6 bits)