RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9581
(903 letters)
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 1408 bits (3647), Expect = 0.0
Identities = 423/903 (46%), Positives = 586/903 (64%), Gaps = 26/903 (2%)
Query: 5 KTILKEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIY 64
+ + KF++L LE RLP SIR++LE+ IRN D + ++ I
Sbjct: 5 AHLAEPLDPV-QPGKKFFNLNKLEDS---RYGRLPFSIRVLLEAAIRNCDEFLVKKQDIE 60
Query: 65 ELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVD 124
+++W + E+P R++LQDFTG+P + D AAMR KK+ +P+KI P+ P D
Sbjct: 61 NILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPAD 120
Query: 125 LIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQIN 184
L++DHSIQVDF R SL N LEF+RN+ER++F+KWG QAF+ +IPPG GI+HQ+N
Sbjct: 121 LVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVN 180
Query: 185 LEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPD 244
LEYL+R + ++D YYPD +VGTDSHTTMI+ +G++GWGVGGIEAEA MLGQPI ++P
Sbjct: 181 LEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQ 240
Query: 245 VIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAP 304
VIG L+GK + VT+TD+VLTITK LR+ VVGKFVEFFG GV L + DRATI+NM P
Sbjct: 241 VIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCP 300
Query: 305 EYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPK--IGEIDYTDIITL 362
EYGAT FFPVD++++ Y TGR+ ++K + Y ++ +F + D+T ++ L
Sbjct: 301 EYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVEL 360
Query: 363 NLDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITK---NG 419
+L V P SGP RPQD + ++++KK F L GF N
Sbjct: 361 DLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTE 420
Query: 420 IKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEY 479
+ +G ++IAAITSCTNTSNP++ML AGLLAKKAV GL + P IKTS +PGS VVT Y
Sbjct: 421 FTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYY 480
Query: 480 LNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESR 539
L SG++ YL +LGF++V YGC TCIGNSG + + E I +++ +LSGNRNFE R
Sbjct: 481 LQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGR 540
Query: 540 IHPSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEK 599
+HP+ AN+LASPPLVIAYAIAG I +D EPLG++ G++++L DIWP+ +EI ++E+
Sbjct: 541 VHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVER 600
Query: 600 FTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW-PISTYISQPPFFNNFKLKFEYF 658
+ +F Y+ I+ + W+ + T D ++ W STYI PPFF N L +
Sbjct: 601 QYVIPGMFKEVYQKIETVN-ESWNAL-ATPSDKLFFWNSKSTYIKSPPFFENLTLDLQP- 657
Query: 659 PKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEV 718
PK+I A L LGDS+TTDHISPAG I +SPA ++L N G+ EFNSYGSRRGN V
Sbjct: 658 PKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAV 717
Query: 719 MIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAG 778
M RGTF+N R+ N L K + T + PSGE + +++AA +Y + I+ AG
Sbjct: 718 MARGTFANIRLLNR--FLNK-----QAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAG 770
Query: 779 KEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITG 838
KEYG GSSRDWAAKG LLG+K V+A S+ERIHR+NL+GMG++PL++L ++ +L +TG
Sbjct: 771 KEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTG 830
Query: 839 NEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLR 898
E + + +KP K+ + G K + ++R DT +E+ Y+ N GIL +++R
Sbjct: 831 QERYTIIIPE-NLKPQMKV--QVKLDTG---KTFQAVMRFDTDVELTYFLNGGILNYMIR 884
Query: 899 ELL 901
++
Sbjct: 885 KMA 887
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 791 bits (2045), Expect = 0.0
Identities = 207/879 (23%), Positives = 334/879 (37%), Gaps = 141/879 (16%)
Query: 23 SLPDLEKKFNINISRLPVSIRIILESIIRNYD-CKKITEEYIYELMNWKPKDLRIKELPL 81
++ E I L +I I+ + + R +KI ++ + N + + + L L
Sbjct: 5 AMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGK-TYLRL 63
Query: 82 IVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKS 141
R+ +QD T + + + VP + DH I+ EK
Sbjct: 64 RPDRVAMQDATAQMAMLQFISSG-----------LPKVAVPSTIHCDHLIEAQLGGEK-- 110
Query: 142 LDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYP 201
+++ N+E Y F+ + PG GI+HQI LE + YP
Sbjct: 111 ---DLRRAKDINQEVYNFLATAGAKYG-VGFWRPGSGIIHQIILENYA----------YP 156
Query: 202 D-IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTA 260
+++GTDSHT +G I GVGG +A M G P P VIGV L G L+ +
Sbjct: 157 GVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 216
Query: 261 TDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKITV 320
D++L + +L K G VE+ G GV S+ ATI NM E GAT FP +
Sbjct: 217 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 276
Query: 321 NYFYNTGRNNLEIKAFESYFKSQKLFGIPKIG--EIDYTDIITLNLDNVSPSLSGPNRPQ 378
Y TGR F + Y +I +NL + P ++GP P
Sbjct: 277 KYLSKTGR--------ADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 328
Query: 379 DLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNT 438
+ V + G+ DI + I SCTN+
Sbjct: 329 LAHPVAEVGSVAEK--------EGWPLDIR--------------------VGLIGSCTNS 360
Query: 439 SNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVA 498
S ++ SA +AK+A+ GL+ K + + TPGS + + G L +G ++A
Sbjct: 361 SYEDMGRSAA-VAKQALAHGLK--CKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLA 417
Query: 499 YGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYA-NFLASPPLVIA 557
C CIG + I + + S NRNF R + F+ SP +V A
Sbjct: 418 NACGPCIGQWDR-------KDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTA 470
Query: 558 YAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNN 617
AIAG + + + L K+GKK P +E+ +F ++ + K+
Sbjct: 471 LAIAGTLKFNPETDFLT-GKDGKKFK--LEAPDADELPR-AEFDPGQDTYQHPPKDSSG- 525
Query: 618 PGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITT 677
+ P S + F+ + K+++ + L + TT
Sbjct: 526 -------------QRVAVSPTSQRLQLLEPFDKWD------GKDLEDLQILIKVKGKCTT 566
Query: 678 DHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILG 737
DHI S AG WL +F + N+ I+N
Sbjct: 567 DHI---------SAAGPWL--------KFRGHLDNISNNL-----LIGAINIEN------ 598
Query: 738 KNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLL 797
+ + E + + A Y + I ++ + YG G+SR+ +A + L
Sbjct: 599 -----RKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHL 653
Query: 798 GVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKI 857
G + +I +SF RIH NL G+LPL F + I + ++G+ K P + +
Sbjct: 654 GGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQGL-KDFAPGKPL 710
Query: 858 DFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFV 896
II NG + + I L +I++++ L +
Sbjct: 711 KCIIKHPNGTQ-ETIL-LNHTFNETQIEWFRAGSALNRM 747
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
{Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Length = 865
Score = 156 bits (395), Expect = 3e-39
Identities = 91/544 (16%), Positives = 162/544 (29%), Gaps = 133/544 (24%)
Query: 77 KELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDH-SIQVDF 135
+T + QD TG +L K + + ++ H +
Sbjct: 402 AYCEPKMTSVGSQDTTGPMTRDEL-------KDLACLGFSADLVM---QSFCHTAAYPKP 451
Query: 136 FREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVI--PPGFGIVHQINLEYLSRGIL 193
+ + + + PG G++H L
Sbjct: 452 ----------------VDVNTHHTL---PDFIMNRGGVSLRPGDGVIHSWLNRMLLPD-- 490
Query: 194 NKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGK 253
+ G DSHT I + G + +P+ + V GK
Sbjct: 491 --------TVGTGGDSHTRFP---IGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGK 539
Query: 254 LNKGVTATDLVLTITKLLRKKNVVGKFVEFF----------GDGVKSLLLPDRATISNMA 303
+ G+T DLV I K+ ++ + +G+ L + +++ +
Sbjct: 540 MQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDAS 599
Query: 304 PEYGATIGFFPVDKITVNYFYNTGRNNLEIKAFESY----------FKSQKLFGIPKIGE 353
E A ++K + + N+ L+ E Y +K P++ E
Sbjct: 600 AERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLE 659
Query: 354 ID----YTDIITLNLDNVS-PSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDIN 408
D Y +I ++L ++ P L PN P D L+ V+
Sbjct: 660 ADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQ--------------------- 698
Query: 409 ELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTS 468
G KI I SC + + LL + +
Sbjct: 699 ----------GEKIDE-----VFIGSCMTNIG-HFRAAGKLLD------AHKGQLPTRLW 736
Query: 469 FTPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSS 528
P +R+ L G K G I GC+ C+GN ++ ++++S
Sbjct: 737 VAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVAD-------GATVVSTS 789
Query: 529 ILSGNRNFESRIHPS--IYANFLASPPLVIAYAIAGNI--LVDLTIEPLGIDKNGKKI-- 582
RNF +R+ ++ LAS L A+ G + + +DK
Sbjct: 790 ----TRNFPNRLGTGANVF---LASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYR 842
Query: 583 YLND 586
YLN
Sbjct: 843 YLNF 846
Score = 30.1 bits (68), Expect = 4.2
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 31/142 (21%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVK------------MVIARSFERIHRANLIGMGIL 821
+ + G GTGSSR A + + I + G L
Sbjct: 233 LAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGAL 292
Query: 822 PLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLLRIDTP 881
P++ + +LN+ G + P + + + G+ + +L T
Sbjct: 293 PIEV----DVSNLNM---------GDVIDVYPYKGE--VRNHETGELLATFELK----TD 333
Query: 882 MEIKYYQNDGILPFVLRELLNS 903
+ I + G +P ++ L +
Sbjct: 334 VLIDEVRAGGRIPLIIGRGLTT 355
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis,
leucine biosynthesis, structural genomics, NPPSFA; 2.10A
{Methanocaldococcus jannaschii}
Length = 170
Score = 67.7 bits (166), Expect = 3e-13
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQF 825
+I AG+ +G GSSR+ A K G+K VIA+SF RI N I +G++P+
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIA 105
Score = 29.6 bits (67), Expect = 2.9
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 662 IKGARALCILGDSITTDHISPAGLIEESSPAG 693
IKG RA GD + TD I P + + P
Sbjct: 3 IKG-RAHK-FGDDVDTDAIIPGPYLRTTDPYE 32
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Length = 163
Score = 66.9 bits (164), Expect = 5e-13
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 774 IIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPL 823
++ AGK +G GSSR+ AA K LG+ VIA SF RI N I +GI L
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLL 103
Score = 30.3 bits (69), Expect = 1.5
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 662 IKGARALCILGDSITTDHISPAGLIEESSPAG 693
G + GD I+TD I+P P
Sbjct: 3 TTG-KVWK-FGDDISTDEITPGRYNLTKDPKE 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 2e-10
Identities = 98/763 (12%), Positives = 221/763 (28%), Gaps = 270/763 (35%)
Query: 10 EFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYELMNW 69
+F+ E++ Y D+ + + ++ + N+DCK + ++ +++
Sbjct: 8 DFETGEHQ----YQYKDI--------------LSVFEDAFVDNFDCKDV-QDMPKSILSK 48
Query: 70 KPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDH 129
+ D I V+ L L L ++K + ++ V L +++
Sbjct: 49 EEID-HIIMSKDAVSGTLR-------LFWTL---------LSKQEEMVQKFVEEVLRINY 91
Query: 130 SIQVDFFR-EKKSLDLNMQL-EFKRNKERYQFIKWGMQAFNKFNV--IPPGFGIVHQIN- 184
+ + E++ + ++ +R++ + Q F K+NV + P ++
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVSRLQP----YLKLRQ 142
Query: 185 -LEYLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIP 243
L L ++++ G+LG
Sbjct: 143 ALLELRPA---------KNVLI----D---------------------GVLG-------- 160
Query: 244 DVIGVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGV-----------KSLL 292
GK T + L + K + +++L
Sbjct: 161 -------SGK-------TWVAL---DVCLSY----KVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 293 LPDRATISNMAPEYGATIGFFPVDKITVNYFYNTGRNNLE-------------------I 333
+ + + P + + K+ ++ R L+
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 334 KAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQDLIKLNNVKKKFTEL 393
AF + L + T V+ LS I L++ T
Sbjct: 260 NAFN--LSCKIL-------------LTTRF-KQVTDFLSAATTTH--ISLDHHSMTLTPD 301
Query: 394 LIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITS---CT--NTSNPNLMLSAG 448
+K + +L + +T N ++ +IA T N + N
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCD---- 353
Query: 449 LLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLG-FNIVAYGCATCIGN 507
+++ I++S L + ++L F
Sbjct: 354 -----------KLTTIIESSL--------NVLEPAEYRKMFDRLSVFP-----------P 383
Query: 508 SGKIKSQI-----------EEIIINNNIITSSILSGNRN-FESRIHPSIYANFLASPP-- 553
S I + + + +++ N + S++ I SIY
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENE 442
Query: 554 ------LVIAYAIAGNILVDLTIEPLGIDKNGK-KIYLNDIWPS-----TEEINSLEKFT 601
+V Y I P D + YL+ + S + I E+ T
Sbjct: 443 YALHRSIVDHYNI-----------PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 602 LNKNLFYFNYKNIKN---NPGKLW---SNISDTVID-NIYNWPISTYIS-QPPFFN---- 649
L + + + +++ ++ + W +I +T+ Y YI P +
Sbjct: 492 LFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKYERLVN 546
Query: 650 ---NFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEES 689
+F K E +N+ ++ +L ++ + + EE+
Sbjct: 547 AILDFLPKIE---ENLICSKYTDLLRIALMAED---EAIFEEA 583
Score = 56.0 bits (134), Expect = 5e-08
Identities = 51/369 (13%), Positives = 105/369 (28%), Gaps = 97/369 (26%)
Query: 590 STEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNW---PIST------ 640
S EEI+ + + + + + ++ + V+ Y + PI T
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 641 -----YISQ-PPFFNNFKLKFEYF---PKNIKGAR-ALCIL--GDSITTDHISPAGLIEE 688
YI Q +N+ ++ +Y + R AL L ++ G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-D-GVLG---- 160
Query: 689 SSPAGK-WLINNGVLKDE-------FNSY----GSRRGNHEVMIRGTFSNKRIKNLITIL 736
+GK W+ + V F + + V+ + ++ L+ +
Sbjct: 161 ---SGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQI 209
Query: 737 GKNNTQ-IEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTG--------SSR 787
N T + ++ + + K Y +++
Sbjct: 210 DPNWTSRSDHSSNIKLR-------IHSIQAELRR-----LLKSKPYENCLLVLLNVQNAK 257
Query: 788 DWAA--KGTKLLGVKMVIARSFERIHRANLIGMGILPLQF----LNNDSIQSL--NITGN 839
W A K+L + R + + + L L D ++SL
Sbjct: 258 AWNAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 840 EYFDLKGISKKIKPL-------EKIDFII----YRK-NGKKIKK-IKLLLRIDTPMEIK- 885
DL P D + ++ N K+ I+ L + P E +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 886 YYQNDGILP 894
+ + P
Sbjct: 374 MFDRLSVFP 382
Score = 52.9 bits (126), Expect = 4e-07
Identities = 88/703 (12%), Positives = 190/703 (27%), Gaps = 251/703 (35%)
Query: 248 VNLIGKLNKGVTATDLVLTITKLLRK-KNVVGKFVEFFGDGVKSLLLPDRATISNMAPEY 306
++ I V+ T + LL K + +V KFVE + Y
Sbjct: 51 IDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQKFVE-----------------EVLRINY 91
Query: 307 G---ATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLN 363
+ I + Y R+ L Y D
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRL------------------------YNDNQVFA 127
Query: 364 LDNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIK 423
NVS R Q +KL ++ EL +P + +G
Sbjct: 128 KYNVS-------RLQPYLKL---RQALLEL--RPA--------------KNVLIDG---- 157
Query: 424 NGDILIAAITSCTNTSNPNLMLSAG--LLAKKAVKFGLEISPKIKTSFTPGSRV----VT 477
+L +G +A S K++ ++ +
Sbjct: 158 --------------------VLGSGKTWVALDVCL-----SYKVQCKM--DFKIFWLNLK 190
Query: 478 EYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFE 537
+ +L L+KL + I + I + + I + + R +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRS--------DHSSNIKLRIHSIQAEL---RRLLK 239
Query: 538 SRIHPS---IYANFLASPPLVIAYAIAGNILV---DLTIEPLGIDKNGKKIYLNDIWPST 591
S+ + + + N + + A+ ++ IL+ + I L+ +
Sbjct: 240 SKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 592 EEINSLEKFTLNKNLFYFNYKN-------IKNNPGKLWSNISDTVIDNIYNW-------- 636
Y + + + NP +L S I++++ D + W
Sbjct: 299 TPDEVKSLLLK-----YLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNC 352
Query: 637 -PISTYIS-----QPPFFNNFKLKFEY---FPKNIK-GARALCIL-GDSITTDHISPAGL 685
++T I P ++ F+ FP + L ++ D I +D +
Sbjct: 353 DKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD---VMVV 407
Query: 686 IEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNL-ITILGKNNTQIE 744
+ + L +++ + + + + L +I+
Sbjct: 408 VNK-------LHKYSLVEKQPKES--TISIPSIYLELKVKLENEYALHRSIVDH------ 452
Query: 745 GGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIA 804
YN + S+++ Y + +G +
Sbjct: 453 ---------------YNIPKTFDSDDLIPPYLDQ--Y-------FY----SHIGHHLKNI 484
Query: 805 RSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRK 864
ER+ ++ + D + + +KI R
Sbjct: 485 EHPERMTLFRMV------------------------FLDFRFLEQKI-----------RH 509
Query: 865 NGKKIKKIKLLLRIDTPMEIKYYQ-----NDGILPFVLRELLN 902
+ +L +T ++K+Y+ ND ++ +L+
Sbjct: 510 DSTAWNASGSIL--NTLQQLKFYKPYICDNDPKYERLVNAILD 550
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 4e-07
Identities = 57/325 (17%), Positives = 107/325 (32%), Gaps = 118/325 (36%)
Query: 607 FYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLKFEYFPKNIKGAR 666
Y K + +W N +D + Y + I + NN +F G +
Sbjct: 1635 LYKTSKAAQ----DVW-NRADNHFKDTYGFSILDIV-----INNPVNLTIHFG----GEK 1680
Query: 667 ALCILGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSN 726
G I ++ + +I E+ GK L + K+ +E TF +
Sbjct: 1681 -----GKRIRENYSA---MIFETIVDGK-LKTEKIFKEI----------NEHSTSYTFRS 1721
Query: 727 KRIKNLITILGKNNTQIEGGFTYYQP-----SGEKMSIYNAAMKYISNNISTIIFAGK-- 779
+ K L+ + TQ FT QP + + +K + FAG
Sbjct: 1722 E--KGLL-----SATQ----FT--QPALTLME---KAAF-EDLKSKGLIPADATFAGHSL 1764
Query: 780 -EYGTGSSRDWAAKGTKLL-----------GVKMVIAR------SFERIH--RANLIGMG 819
EY AA L V++V R + R R+N +
Sbjct: 1765 GEY--------AA-----LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 820 ILPLQF---LNNDSIQSL-----------------NITGNEYFDLKGISKKIKPLEKIDF 859
I P + + +++Q + N+ +Y + ++ L+ +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV----AAGDLRALDTVTN 1867
Query: 860 IIYRKNGKKIKKIKLL-LRIDTPME 883
++ N K++KI ++ L+ +E
Sbjct: 1868 VL---NFIKLQKIDIIELQKSLSLE 1889
Score = 49.7 bits (118), Expect = 5e-06
Identities = 82/466 (17%), Positives = 134/466 (28%), Gaps = 158/466 (33%)
Query: 258 VTATDLVLTITKLLRKKNVVGKFVE-------FFGDGVKSLLLPDRATISNMAPEYGATI 310
+ A L T L++ K ++ ++ F S L RA A I
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF--RAVGEGNAQLV--AI 159
Query: 311 ----GFFPVDKITVNYF------YNTGRNNLE--IKAFESYFKSQKLFGIPKIGEIDYT- 357
G T +YF Y T + IK +L E +T
Sbjct: 160 FGGQG------NTDDYFEELRDLYQTYHVLVGDLIKFSAETL--SELIRTTLDAEKVFTQ 211
Query: 358 --DIIT-LNLDNVSPS--------LSGPNRPQDLIKLNNVKKKFTELL-IKPTFKN-GFN 404
+I+ L + +P +S P LI + +L T K GF
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCP-----LIGV-------IQLAHYVVTAKLLGFT 259
Query: 405 KDINELNKIYITKNGIKIKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKF----GL- 459
EL G + ++ A + T++ S + +KA+ G+
Sbjct: 260 PG--ELRSYL---KGATGHSQGLVTAVAIAETDSWE-----SFFVSVRKAITVLFFIGVR 309
Query: 460 --EISPKIKTSFTPGSRVVTEYLNN-----------SGLLL-YLEKL--GFNIVAYGCAT 503
E P TS P ++ + L N S L ++ N
Sbjct: 310 CYEAYP--NTSLPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-------- 357
Query: 504 CIGNSGKIKSQIEEIIIN---NNIIT---SSILSGNRNFE----------SRI-----HP 542
+ Q+E ++N N +++ S+ N SRI
Sbjct: 358 ---SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 543 SIYANFLA------SPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWP--STEEI 594
FL S LV A + I DL + + +I P T
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDL---INKDLVKNNVSFNAKDIQI------PVYDT--- 462
Query: 595 NSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPIST 640
F+ +++ G + I D +I W +T
Sbjct: 463 --------------FDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Score = 42.7 bits (100), Expect = 6e-04
Identities = 60/381 (15%), Positives = 112/381 (29%), Gaps = 121/381 (31%)
Query: 11 FQISENKKGKFYS-----------LPDLEKKFNI---NISRLPVSIRIILESIIRN-YDC 55
F+ + + +L + + L L +IR D
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 56 KKITEEYIYELMNW--KPKDLRIKE--------LPLIVTRILLQDFTGIPLLTDLAAMRS 105
+K+ + + ++ W P + K+ PLI + LA
Sbjct: 206 EKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIG-------------VIQLAHYVV 251
Query: 106 IAKKINKNPKKIEPL------VPVDLIVDHSIQV-----DFFREKKSLDLNMQLEFKRNK 154
AK + P ++ L+ +I FF S+ + + F
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF---VSVRKAITVLF---- 304
Query: 155 ERYQFIKW-GMQAFNKFNVIPP---------GFGI------VHQINLEYLSRGILNKDNI 198
FI +A+ + +PP G+ + + E + +NK N
Sbjct: 305 ----FIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISNLTQEQVQD-YVNKTNS 358
Query: 199 YYPDIIVGTDSHTTMINSIG--VIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNK 256
+ P G +++N V+ G P + G+NL + K
Sbjct: 359 HLPA---GKQVEISLVNGAKNLVVS-------------GPPQ-----SLYGLNLTLRKAK 397
Query: 257 GVTATDLVLTITKLL---RKKNVVGKF----VEFFGDGVKSLLLPDRATISNMAPEYGAT 309
+ D +++ RK +F F LL+P I+ +
Sbjct: 398 APSGLD----QSRIPFSERKLKFSNRFLPVASPFHS----HLLVPASDLINKDLVKNN-- 447
Query: 310 IGFFPVD-KITVNYFYNTGRN 329
+ F D +I V Y G +
Sbjct: 448 VSFNAKDIQIPV-YDTFDGSD 467
Score = 38.5 bits (89), Expect = 0.013
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 40/124 (32%)
Query: 25 PDLEKKFNINISRLPVSI---RIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPL 81
P E+K + LPV+ +L I ++ + +++ KD++I P+
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPAS-----DLINKDLVKNNVSFNAKDIQI---PV 459
Query: 82 IVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLV------PVD--LIVDHSIQ- 132
T F G +DL R ++ I E +V PV
Sbjct: 460 YDT------FDG----SDL---RVLSGSI------SERIVDCIIRLPVKWETTTQFKATH 500
Query: 133 -VDF 135
+DF
Sbjct: 501 ILDF 504
Score = 32.7 bits (74), Expect = 0.73
Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 123/335 (36%)
Query: 323 FYNT---GRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQD 379
Y T ++ +A +++FK F I DI+ N P +
Sbjct: 1635 LYKTSKAAQDVWN-RA-DNHFKDTYGFSI--------LDIVINN-------------PVN 1671
Query: 380 LIKLNNVKK--KFTELLIKPTFKNGFN---------KDINELNKIYITKNGIKIKNGDIL 428
L +K + E F+ + K+INE + Y T K +L
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEK----GLL 1726
Query: 429 IAAITSCTNTSN--PNLML----------SAGLLAKKAVKF-----G-----------LE 460
+ T P L L S GL+ A F G +
Sbjct: 1727 -------SATQFTQPALTLMEKAAFEDLKSKGLIPADAT-FAGHSLGEYAALASLADVMS 1778
Query: 461 ISPKIKTSFTPGSRVVTEYLNNSGLLLY--LEKLGFNIVAYGCATCIGNSGKI-----KS 513
I ++ F R G+ + + + YG N G++ +
Sbjct: 1779 IESLVEVVFY---R---------GMTMQVAVPRDELGRSNYGMIAI--NPGRVAASFSQE 1824
Query: 514 QIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASPPLVIAYAIAGNIL-VDLTIEP 572
++ ++ T ++ I N+ Y AG++ +D
Sbjct: 1825 ALQYVVERVGKRTGWLVE------------I-VNYN-VENQQ--YVAAGDLRALDTVTNV 1868
Query: 573 LGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLF 607
L K +KI DI + + SLE+ + +LF
Sbjct: 1869 LNFIKL-QKI---DIIELQKSL-SLEE--VEGHLF 1896
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis,
isopropylmalate isomerase, LEUD, amino-acid
biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB:
3h5h_A 3h5e_A
Length = 171
Score = 49.1 bits (118), Expect = 8e-07
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSI 831
+++ AG ++GTGSSR+ A G ++VI+ F I R N G+L + + D +
Sbjct: 65 GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAE-VAQDDV 123
Query: 832 QSL 834
+ L
Sbjct: 124 ELL 126
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
2.10A {Streptococcus mutans}
Length = 213
Score = 46.1 bits (110), Expect = 2e-05
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSI 831
++I+ G +G GSSR+ AA G K+++A SF IH N + GILP+ +
Sbjct: 86 ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPII-QPKEVR 144
Query: 832 QSL 834
L
Sbjct: 145 DKL 147
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics,
center for structural genomics of infec diseases, csgid,
isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Length = 203
Score = 43.6 bits (104), Expect = 9e-05
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 11/68 (16%)
Query: 772 STIIFAGKEYGTGSSRD---WAAKGTKLL--GVKMVIARSFERIHRANLIGMGILPLQFL 826
S+I+ + + +G+GSSR+ WA L+ G++ +IA SF I + N +G G+L ++ L
Sbjct: 73 SSILVSFENFGSGSSREHAPWA-----LVDYGIRAIIAPSFADIFKNNALGNGLLTIE-L 126
Query: 827 NNDSIQSL 834
D + +
Sbjct: 127 AKDEVLEI 134
>2qyz_A Uncharacterized protein; structural genomics, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 2.04A {Clostridium tetani E88}
Length = 139
Score = 35.8 bits (82), Expect = 0.017
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 576 DKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISD-----TVI 630
DKN K+IY DI + ++L + ++ F K IK + VI
Sbjct: 60 DKNEKEIYEGDIIKKSNRSSNLYEIIYQDSIACFRCKVIKGDIKSFPCLNIGTVRNCEVI 119
Query: 631 DNIY 634
NIY
Sbjct: 120 GNIY 123
>2p84_A ORF041; structural genomics, hypothetical protein, PSI, protein
STRU initiative, NEW YORK structural genomics research
consortiu nysgrc; 1.80A {Staphylococcus phage} SCOP:
b.172.1.1
Length = 145
Score = 32.4 bits (73), Expect = 0.28
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 576 DKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISD-TVIDNIY 634
DKN K+IY +DI + + ++ F + + ++ V+ NIY
Sbjct: 66 DKNVKEIYESDIVRNLYGELYVVEW--LDGSFVLTEFYNGGYDHYIIDSSTEYEVLGNIY 123
>2ox7_A Hypothetical protein; structural genomics, PSI, protein STRU
initiative, NEW YORK structural genomics research
consortiu nysgrc; 1.78A {Enterococcus faecalis} SCOP:
b.172.1.1
Length = 155
Score = 32.5 bits (73), Expect = 0.29
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 576 DKNGKKIYLNDI-----WPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVI 630
DKNG +I+ DI S+ + F++ + ++ + VI
Sbjct: 75 DKNGVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVI 134
Query: 631 DNIY 634
NI+
Sbjct: 135 GNIH 138
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 31.7 bits (72), Expect = 1.0
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 101 AAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERY--Q 158
A+ + K + ++ ++PV+ + S Q F +D+ M +ERY +
Sbjct: 286 DALPAHGKVVL-----VQCILPVNPEANPSSQGVF-----HVDMIMLAHNPGGRERYERE 335
Query: 159 FIKWGMQA-FNKFNVIP 174
F A F
Sbjct: 336 FQALARGAGFTGVKSTY 352
>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal
protein; 2.70A {Escherichia coli} SCOP: a.45.1.1
c.47.1.5
Length = 280
Score = 31.4 bits (71), Expect = 1.2
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 25/138 (18%)
Query: 41 SIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTD- 99
R++LE + Y+ + + N K + L +F +P D
Sbjct: 15 PTRLLLEYLEEKYEEHLYERDEGDKWRNKKFE--------------LGLEFPNLPYYIDG 60
Query: 100 -------LAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKR 152
+A +R IA K N + + ++ +D + + E +
Sbjct: 61 DVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAV--LDIRYGVSRIAYSKDFETLK 118
Query: 153 NKERYQFIKWGMQAFNKF 170
+ + ++ F
Sbjct: 119 -VDFLSKLPEMLKMFEDR 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.2
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 13/40 (32%)
Query: 727 KRIKNLITILGKNNTQIEGGFTYYQP-SGEKMSIYNAAMK 765
+ +K L + Y S ++I A M+
Sbjct: 20 QALKKL-----------QASLKLYADDSAPALAI-KATME 47
Score = 29.1 bits (64), Expect = 3.5
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 20/41 (48%)
Query: 332 EIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLS 372
+K ++ S KL+ D+ +P+L+
Sbjct: 21 ALKKLQA---SLKLYA-D---------------DS-APALA 41
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 1.3
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 18/62 (29%)
Query: 217 IGV-IGWGVGGIEAEAGM-----LGQPIY--FLIPDVI-----GVNLIGKLNKG-----V 258
+G G G+GG+ A GM +P+ L I VN++ + G V
Sbjct: 1044 VGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPV 1103
Query: 259 TA 260
A
Sbjct: 1104 GA 1105
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 30.8 bits (70), Expect = 2.0
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 91 FTGIPLLTDLAAMRSI--------AKKINKNPKK-IEP---LVPVDLIVDHSIQVDFFRE 138
F IP D+ ++ + +I + ++P L L++D+ I
Sbjct: 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRL----LVIDNLIDERPAAS 317
Query: 139 KKSLDLNMQLEFKRNKERY--QFIKWGMQA-FNKFNVIPPGFGIVH 181
+DL + L ER +F ++ +P G G V
Sbjct: 318 TLFVDLLL-LVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVR 362
>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal
fibrinogen gamma...; gamma chain integrin fragment; HET:
GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1
c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A*
1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A*
3cru_A* 3d0z_A*
Length = 234
Score = 30.6 bits (69), Expect = 2.0
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 25/138 (18%)
Query: 41 SIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTD- 99
R++LE + Y+ + + N K + L +F +P D
Sbjct: 15 PTRLLLEYLEEKYEEHLYERDEGDKWRNKKFE--------------LGLEFPNLPYYIDG 60
Query: 100 -------LAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKR 152
+A +R IA K N + + ++ +D + + E +
Sbjct: 61 DVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAV--LDIRYGVSRIAYSKDFETLK 118
Query: 153 NKERYQFIKWGMQAFNKF 170
+ + ++ F
Sbjct: 119 -VDFLSKLPEMLKMFEDR 135
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione
S-transferase; ankyrin binding, carrier crystallization,
ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1
c.47.1.5
Length = 254
Score = 29.8 bits (67), Expect = 3.3
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 25/138 (18%)
Query: 41 SIRIILESIIRNYDCKKITEEYIYELMNWKPKDLRIKELPLIVTRILLQDFTGIPLLTD- 99
R++LE + Y+ + + N K + L +F +P D
Sbjct: 16 PTRLLLEYLEEKYEEHLYERDEGDKWRNKKFE--------------LGLEFPNLPYYIDG 61
Query: 100 -------LAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKR 152
+A +R IA K N + + ++ +D + + E +
Sbjct: 62 DVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAV--LDIRYGVSRIAYSKDFETLK 119
Query: 153 NKERYQFIKWGMQAFNKF 170
+ + ++ F
Sbjct: 120 -VDFLSKLPEMLKMFEDR 136
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 27.9 bits (62), Expect = 8.1
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 749 YYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGT--KLLGVKMVIARS 806
+ EK + A +++ N+ I + G R T ++ + A+
Sbjct: 39 QVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKL 98
Query: 807 FERIHRANLIGMGI 820
+ ++ MGI
Sbjct: 99 VREVAAPDVGRMGI 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.140 0.405
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,243,574
Number of extensions: 930927
Number of successful extensions: 2169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2125
Number of HSP's successfully gapped: 53
Length of query: 903
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 801
Effective length of database: 3,853,851
Effective search space: 3086934651
Effective search space used: 3086934651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)