RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9581
(903 letters)
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 597 bits (1539), Expect = 0.0
Identities = 303/625 (48%), Positives = 418/625 (66%), Gaps = 10/625 (1%)
Query: 7 ILKEFQISENKKGKFYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCKKITEEYIYEL 66
+ + + K KF++L LE RLP SIR++LE+ IRN D + ++ I +
Sbjct: 7 LAEPLDPVQPGK-KFFNLNKLEDS---RYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENI 62
Query: 67 MNWKPKDLRIKELPLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLI 126
++W + E+P R++LQDFTG+P + D AAMR KK+ +P+KI P+ P DL+
Sbjct: 63 LHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLV 122
Query: 127 VDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLE 186
+DHSIQVDF R SL N LEF+RN+ER++F+KWG QAF+ +IPPG GI+HQ+NLE
Sbjct: 123 IDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLE 182
Query: 187 YLSRGILNKDNIYYPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVI 246
YL+R + ++D YYPD +VGTDSHTTMI+ +G++GWGVGGIEAEA MLGQPI ++P VI
Sbjct: 183 YLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVI 242
Query: 247 GVNLIGKLNKGVTATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEY 306
G L+GK + VT+TD+VLTITK LR+ VVGKFVEFFG GV L + DRATI+NM PEY
Sbjct: 243 GYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEY 302
Query: 307 GATIGFFPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDY--TDIITLNL 364
GAT FFPVD++++ Y TGR+ ++K + Y ++ +F D T ++ L+L
Sbjct: 303 GATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDL 362
Query: 365 DNVSPSLSGPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELN--KIYITKN-GIK 421
V P SGP RPQD + ++++KK F L GF N K +I N
Sbjct: 363 KTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFT 422
Query: 422 IKNGDILIAAITSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLN 481
+ +G ++IAAITSCTNTSNP++ML AGLLAKKAV GL + P IKTS +PGS VVT YL
Sbjct: 423 LAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQ 482
Query: 482 NSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIH 541
SG++ YL +LGF++V YGC TCIGNSG + + E I +++ +LSGNRNFE R+H
Sbjct: 483 ESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVH 542
Query: 542 PSIYANFLASPPLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFT 601
P+ AN+LASPPLVIAYAIAG I +D EPLG++ G++++L DIWP+ +EI ++E+
Sbjct: 543 PNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQY 602
Query: 602 LNKNLFYFNYKNIKNNPGKLWSNIS 626
+ +F Y+ I+ + W+ ++
Sbjct: 603 VIPGMFKEVYQKIETVN-ESWNALA 626
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 334 bits (856), Expect = e-105
Identities = 145/589 (24%), Positives = 227/589 (38%), Gaps = 81/589 (13%)
Query: 23 SLPDLEKKFNINISRLPVSIRIILESIIRN---YDCKKITEEYIYELMNWKPKDLRIKEL 79
++ E I L +I I+ + + R + KI ++ + N + + + L
Sbjct: 5 AMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSE--KIVYGHLDDPANQEIERGKT-YL 61
Query: 80 PLIVTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREK 139
L R+ +QD T + + + VP + DH I+ EK
Sbjct: 62 RLRPDRVAMQDATAQMAMLQFISSG-----------LPKVAVPSTIHCDHLIEAQLGGEK 110
Query: 140 KSLDLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIY 199
+++ N+E Y F+ + P I I Y G
Sbjct: 111 -----DLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPG-------- 157
Query: 200 YPDIIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVT 259
+++GTDSHT +G I GVGG +A M G P P VIGV L G L+ +
Sbjct: 158 --VLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTS 215
Query: 260 ATDLVLTITKLLRKKNVVGKFVEFFGDGVKSLLLPDRATISNMAPEYGATIGFFPVDKIT 319
D++L + +L K G VE+ G GV S+ ATI NM E GAT FP +
Sbjct: 216 PKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRM 275
Query: 320 VNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLSGPNRPQD 379
Y TGR A + + + Y +I +NL + P ++GP P
Sbjct: 276 KKYLSKTGR------ADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDL 329
Query: 380 LIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAITSCTNTS 439
+ V + + DI + I SCTN+S
Sbjct: 330 AHPVAEVGSVAEK----------------------------EGWPLDIRVGLIGSCTNSS 361
Query: 440 NPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKLGFNIVAY 499
++ SA + AK+A+ GL+ K + + TPGS + + G L +G ++A
Sbjct: 362 YEDMGRSAAV-AKQALAHGLK--CKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLAN 418
Query: 500 GCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYAN-FLASPPLVIAY 558
C CIG + I + + S NRNF R + + F+ SP +V A
Sbjct: 419 ACGPCIGQWDR-------KDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTAL 471
Query: 559 AIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLF 607
AIAG + + + L K+GKK L P +E+ E F ++ +
Sbjct: 472 AIAGTLKFNPETDFL-TGKDGKKFKLE--APDADELPRAE-FDPGQDTY 516
>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein
1, C-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 259
Score = 239 bits (611), Expect = 2e-73
Identities = 122/272 (44%), Positives = 171/272 (62%), Gaps = 15/272 (5%)
Query: 631 DNIYNW-PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEES 689
D ++ W STYI PPFF N L + PK+I A L LGDS+TTDHISPAG I +
Sbjct: 1 DKLFFWNSKSTYIKSPPFFENLTLDLQP-PKSIVDAYVLLNLGDSVTTDHISPAGNIARN 59
Query: 690 SPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTY 749
SPA ++L N G+ EFNSYGSRRGN VM RGTF+N R+ N + T
Sbjct: 60 SPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLN-------RFLNKQAPQTI 112
Query: 750 YQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFER 809
+ PSGE + +++AA +Y + I+ AGKEYG GSSRDWAAKG LLG+K V+A S+ER
Sbjct: 113 HLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYER 172
Query: 810 IHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKI 869
IHR+NL+GMG++PL++L ++ +L +TG E + I + +KP K+ + G
Sbjct: 173 IHRSNLVGMGVIPLEYLPGENADALGLTGQERYT-IIIPENLKPQMKV--QVKLDTG--- 226
Query: 870 KKIKLLLRIDTPMEIKYYQNDGILPFVLRELL 901
K + ++R DT +E+ Y+ N GIL +++R++
Sbjct: 227 KTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 258
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 490
Score = 223 bits (570), Expect = 9e-65
Identities = 82/558 (14%), Positives = 156/558 (27%), Gaps = 115/558 (20%)
Query: 83 VTRILLQDFTGIPLLTDLAAMRSIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSL 142
+T + QD TG +L + A V H+
Sbjct: 36 MTSVGSQDTTGPMTRDELKDL---ACLGFSADL-------VMQSFCHTAAYPKPV----- 80
Query: 143 DLNMQLEFKRNKERYQFIKWGMQAFNKFNVIPPGFGIVHQINLEYLSRGILNKDNIYYPD 202
+ + + + ++ PG G++H L
Sbjct: 81 ----------DVNTHHTLPDFIMNRGGVSL-RPGDGVIHSWLNRMLLPD----------T 119
Query: 203 IIVGTDSHTTMINSIGVIGWGVGGIEAEAGMLGQPIYFLIPDVIGVNLIGKLNKGVTATD 262
+ G DSHT I + G + +P+ + V GK+ G+T D
Sbjct: 120 VGTGGDSHTRFP---IGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRD 176
Query: 263 LVLTITKLLRKKNVVGKFVEFF----------GDGVKSLLLPDRATISNMAPEYGATIGF 312
LV I K+ ++ + +G+ L + +++ + E A
Sbjct: 177 LVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCT 236
Query: 313 FPVDKITVNYFYNTGRNNLEIKAFESYFKSQKLFGIPKIGEIDYTDIITLNLDNVSPSLS 372
++K + + N+ L+ E Y + L + E + L D + +
Sbjct: 237 IKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAA 296
Query: 373 GPNRPQDLIKLNNVKKKFTELLIKPTFKNGFNKDINELNKIYITKNGIKIKNGDILIAAI 432
+ IK + +P ++ I I
Sbjct: 297 VIDIDLADIKEPILCAPNDPDDARP---------------------LSAVQGEKIDEVFI 335
Query: 433 TSCTNTSNPNLMLSAGLLAKKAVKFGLEISPKIKTSFTPGSRVVTEYLNNSGLLLYLEKL 492
SC A + + + P +R+ L G K
Sbjct: 336 GSCMTNIGH-------FRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKS 388
Query: 493 GFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSSILSGNRNFESRIHPSIYANFLASP 552
G I GC+ C+GN ++ + + + RNF +R+ FLAS
Sbjct: 389 GARIEIPGCSLCMGNQARVADG-----------ATVVSTSTRNFPNRLGTGANV-FLASA 436
Query: 553 PLVIAYAIAGNILVDLTIEPLGIDKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYK 612
L A+ G + + Y+ + + + Y N+
Sbjct: 437 ELAAVAALIGKL----------PTPEEYQTYVAQVDKTAVDTYR-----------YLNFN 475
Query: 613 NIKNNPGKLWSNISDTVI 630
+ ++ +D VI
Sbjct: 476 QLSQ-----YTEKADGVI 488
>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 226
Score = 164 bits (417), Expect = 8e-47
Identities = 60/266 (22%), Positives = 100/266 (37%), Gaps = 45/266 (16%)
Query: 637 PISTYISQPPFFNNFKLKFEYFPKNIKGARALCILGDSITTDHISPAGLIEESSPAGKWL 696
P S + F+ + K+++ + L + TTDHIS AG WL
Sbjct: 5 PTSQRLQLLEPFDKWD------GKDLEDLQILIKVKGKCTTDHISAAG---------PWL 49
Query: 697 INNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEK 756
G L + N+ N E + E
Sbjct: 50 KFRGHLDNISNNLLIGAINSENRK------------------------ANSVRNAVTQEF 85
Query: 757 MSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLI 816
+ + A Y + I ++ + YG GSSR+ +A + LG + +I +SF RIH NL
Sbjct: 86 GPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLK 145
Query: 817 GMGILPLQFLNNDSIQSLNITGNEYFDLKGISKKIKPLEKIDFIIYRKNGKKIKKIKLLL 876
G+LPL F + I + ++G+ K P + + II NG ++ LL
Sbjct: 146 KQGLLPLTFADPADYNK--IHPVDKLTIQGL-KDFAPGKPLTCIIKHPNGT--QETILLN 200
Query: 877 RIDTPMEIKYYQNDGILPFVLRELLN 902
+I++++ L + +EL
Sbjct: 201 HTFNETQIEWFRAGSALNRM-KELQQ 225
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 162
Score = 69.2 bits (169), Expect = 3e-14
Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 81/228 (35%)
Query: 671 LGDSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGSRRGNHEVMIRGTFSNKRIK 730
GD I+TD I+P + + + + F R
Sbjct: 10 FGDDISTDEITPGRYN-------------------------LTKDPKELAKIAFIEVR-- 42
Query: 731 NLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNISTIIFAGKEYGTGSSRDWA 790
+ A ++ + AGK +G GSSR+ A
Sbjct: 43 -----------------------------PDFARNVRPGDV---VVAGKNFGIGSSRESA 70
Query: 791 AKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFLNNDSIQSLNITGNEYFDLKGISKK 850
A K LG+ VIA SF RI N I +GI L ++ + + + + +
Sbjct: 71 ALALKALGIAGVIAESFGRIFYRNAINIGIPLLLG------KTEGLKDGDLVTVNWETGE 124
Query: 851 IKPLEKIDFIIYRKNGKKIKKIKLLLRIDTPMEIKYYQNDGILPFVLR 898
+ + G +I + L ++ + GIL ++ R
Sbjct: 125 V------------RKGDEILMFEPL----EDFLLEIVREGGILEYIRR 156
>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M
protein {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 425
Score = 32.6 bits (73), Expect = 0.22
Identities = 42/318 (13%), Positives = 82/318 (25%), Gaps = 27/318 (8%)
Query: 595 NSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVIDNIYNWPISTYISQPPFFNNFKLK 654
+L+ + NL Y +N K + VI I ++
Sbjct: 73 ETLKLLSELDNLIGTIYTKAQNKIDK-PVYLKK-VITMIDEEQWLIMDGDV-KGAIYESI 129
Query: 655 FEYFPKNIKGARALCILGDSIT---TDHISPAGLIEESSPAGKWLINNGVLKDEFNSYGS 711
E ++ K + D I+P PA D +
Sbjct: 130 LEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSA 189
Query: 712 RRGNHEVMIRGTFSNKRIKNLITILGKNNTQIEGGFTYYQPSGEKMSIYNAAMKYISNNI 771
+ + + L+ L N + G T P + S+ + +
Sbjct: 190 SKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPSTLVDVIL 249
Query: 772 STIIFAGKEYGTGSSRDWAAKGTKLLGVKMVIARSFERIHRANLIGMGILPLQFL----- 826
+ F + G+ + + + +LP L
Sbjct: 250 ANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM-LMLKTGGRAAVVLPDNVLFEAGA 308
Query: 827 ---------NNDSIQSLNITGNEYFDLKGIS------KKIKPLEKIDFIIYRKNGKKIKK 871
+ ++ ++ F +G+ K +P ++I F YR + K
Sbjct: 309 GETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQPTKEIWFYDYRTDIKHTLA 368
Query: 872 IKLLLRIDTPMEIKYYQN 889
L R + Y N
Sbjct: 369 TNKLERHHLDDFVSCYNN 386
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440
{Enterococcus faecalis [TaxId: 1351]}
Length = 143
Score = 30.2 bits (67), Expect = 0.51
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 576 DKNGKKIYLNDI-----WPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISDTVI 630
DKNG +I+ DI S+ + F++ + ++ + VI
Sbjct: 73 DKNGVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVI 132
Query: 631 DNIY 634
NI+
Sbjct: 133 GNIH 136
>d2p84a1 b.172.1.1 (A:3-135) Orf041 product {Staphylococcus phage 37
[TaxId: 320840]}
Length = 133
Score = 29.2 bits (65), Expect = 0.92
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 576 DKNGKKIYLNDIWPSTEEINSLEKFTLNKNLFYFNYKNIKNNPGKLWSNISD-TVIDNIY 634
DKN K+IY +DI L F + + ++ V+ NIY
Sbjct: 64 DKNVKEIYESDI--VRNLYGELYVVEWLDGSFVLTEFYNGGYDHYIIDSSTEYEVLGNIY 121
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 28.9 bits (64), Expect = 1.2
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 671 LGDS-ITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSY 709
GD+ I+++ +E L G
Sbjct: 98 RGDNFISSELFV-LAALESRGTLADILKAAGATTANITQA 136
>d1l2ha_ b.42.1.2 (A:) Interleukin-1beta {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 27.9 bits (62), Expect = 3.6
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 32/112 (28%)
Query: 470 TPGSRVVTEYLNNSGLLLYLEKLGFNIVAYGCATCIGNSGKIKSQIEEIIINNNIITSS- 528
+ + L LYL +C+ K Q+E + N
Sbjct: 47 EESNDKIPVALGLKEKNLYL-------------SCVLKDDKPTLQLESVDPKNYPKKKME 93
Query: 529 -------ILSGNRN-FESRIHPSIYANFLASPPLVIAYAIAGNILVDLTIEP 572
I N+ FES P+ Y I+ + A N+ V L
Sbjct: 94 KRFVFNKIEINNKLEFESAQFPNFY----------ISTSQAENMPVFLGGTK 135
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 112
Score = 26.9 bits (59), Expect = 4.5
Identities = 9/68 (13%), Positives = 18/68 (26%)
Query: 105 SIAKKINKNPKKIEPLVPVDLIVDHSIQVDFFREKKSLDLNMQLEFKRNKERYQFIKWGM 164
++A P + I S + + + R F +W
Sbjct: 20 TLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLC 79
Query: 165 QAFNKFNV 172
+ N+ N
Sbjct: 80 RLHNEVNR 87
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 27.4 bits (60), Expect = 6.3
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 6/119 (5%)
Query: 1 MFHKKTILKEFQISENKKGK----FYSLPDLEKKFNINISRLPVSIRIILESIIRNYDCK 56
FH LKE + E F + D + + P S ++ILE +D
Sbjct: 60 EFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEI 119
Query: 57 KITEEYIYELMNWKPKDL-RIKELPLIVTRILLQDFTGIPLLTD-LAAMRSIAKKINKN 113
+ + ++ K + RI + L++ +L G + D L M S+ K+ N
Sbjct: 120 QQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDA 178
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an
Hsp100 chaperone {Escherichia coli [TaxId: 562]}
Length = 142
Score = 26.7 bits (58), Expect = 7.4
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 673 DSITTDHISPAGLIEESSPAGKWLINNGVLKDEFNSY 709
+ +T ++ A E+ S A L + V + + ++
Sbjct: 101 NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNF 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.140 0.405
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,542,770
Number of extensions: 184923
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 27
Length of query: 903
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 809
Effective length of database: 1,116,976
Effective search space: 903633584
Effective search space used: 903633584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)