BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9582
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 184/329 (55%), Positives = 248/329 (75%), Gaps = 2/329 (0%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M K P+R+++TGAAGQI Y+++FRIANGD+LGKDQP+ILQLLE N+K+QKA++GV+MEI
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALN 120
+DC FPLL ++ H +P+TAFKDA++A+L+G+ PR MER +LL N+ IF QGKA++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 121 SVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSS 180
+VASR++KVLVVGNP NTN YI MKSAP L KNFTAMLRLDHNRA++++A+K +PVSS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 181 IKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXX 240
I+K+FVWGNHS +MY DYRYA ++G ++DMIN+++ WN++ FLP
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDA-WNRDTFLPTVGKRGAAIIDARGV 239
Query: 241 XXXXXXXXXXIDHIKDWIFGTEN-WVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
IDHI DW+ GT W TMGIPSDGSY +P+ +IFGFPV +N +YKI+Q
Sbjct: 240 SSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQG 299
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHLI 328
L ID FS+++IN+++ EL E + HL+
Sbjct: 300 LSIDAFSQERINVTLNELLEEQNGVQHLL 328
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 178/330 (53%), Positives = 240/330 (72%), Gaps = 4/330 (1%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M K R+++TGAAGQI Y+++FRIANGDLLGKDQP+ILQLL+ ++Q A+KGV+ME+
Sbjct: 5 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLP--QAQAAVKGVVMEL 62
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALN 120
+DC FPLL V + ++P AFKDA++A+L+G+ PR MER +LL+ N+ IF QG ALN
Sbjct: 63 DDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALN 122
Query: 121 SVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSS 180
VASRDVKVLVVGNP NTN YI MKSAPDL KNFTAMLRLDHNRA+++LA+K +PV+S
Sbjct: 123 EVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVAS 182
Query: 181 IKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXX 240
I+K+ VWGNHS +MYPD+R+AT G + +IN++ WN++ F+P
Sbjct: 183 IEKLAVWGNHSPTMYPDFRFATAEGESLLKLINDD-VWNRDTFIPTVGKRGAAIIEARGL 241
Query: 241 XXXXXXXXXXIDHIKDWIFGTEN-WVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
IDH++DW+ GT WVTMGIPSDGSY +P+DII+G PV +N +YK ++
Sbjct: 242 SSAASAANAAIDHVRDWVLGTNGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEG 301
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHLIR 329
LEID FSR+K++ ++ EL E ++HL++
Sbjct: 302 LEIDAFSREKMDGTLAELLEERDGVAHLLK 331
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 153/328 (46%), Positives = 223/328 (67%), Gaps = 6/328 (1%)
Query: 2 LKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIE 61
+K PVR+++TGAAGQIGY+++FRIA G++LGKDQP+ILQLLE ++ KA++GV+ME+E
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP--QAMKALEGVVMELE 58
Query: 62 DCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNS 121
DC FPLL + ++P AFKDA+ A+L+G+ PRK+ MER +LL +N IF EQG+AL
Sbjct: 59 DCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 122 VASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSI 181
VA +DVKVLVVGNP NTN I K+AP L+ +NFTAM RLDHNRA A+LA K V I
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRI 178
Query: 182 KKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXX 241
+++ VWGNHS +M+PD +A V+G ++++ W + VF+P
Sbjct: 179 RRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME--WYEKVFIPTVAQRGAAIIQARGAS 236
Query: 242 XXXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
I+HI+DW GT +WV+M +PS G Y +P+ I++ FPV K+ Y++++
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHL 327
LEI++F+RK++ ++ +EL +E+ + L
Sbjct: 297 LEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 153/328 (46%), Positives = 223/328 (67%), Gaps = 6/328 (1%)
Query: 2 LKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIE 61
+K PVR+++TGAAGQIGY+++FRIA G++LGKDQP+ILQLLE ++ KA++GV+ME+E
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP--QAMKALEGVVMELE 58
Query: 62 DCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNS 121
DC FPLL + ++P AFKDA+ A+L+G+ PRK+ MER +LL +N IF EQG+AL
Sbjct: 59 DCAFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 122 VASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSI 181
VA +DVKVLVVGNP NTN I K+AP L+ +NFTAM RLDHNRA A+LA K V I
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRI 178
Query: 182 KKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXX 241
+++ VWGNHS +M+PD +A V+G ++++ W + VF+P
Sbjct: 179 RRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME--WYEKVFIPTVAQRGAAIIQARGAS 236
Query: 242 XXXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
I+HI+DW GT +WV+M +PS G Y +P+ I++ FPV K+ Y++++
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHL 327
LEI++F+RK++ ++ +EL +E+ + L
Sbjct: 297 LEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 152/328 (46%), Positives = 224/328 (68%), Gaps = 6/328 (1%)
Query: 2 LKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIE 61
+K PVR+++TGAAGQIGY+++FRIA G++LGKDQP+ILQLL +++S +A++GV+ME+E
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL--GSERSFQALEGVVMELE 58
Query: 62 DCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNS 121
DC FPLL + ++P AFKDA+ A+L+G+ PRK+ MER +LL +N IF EQG+AL
Sbjct: 59 DCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 122 VASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSI 181
VA +DVKVLVVGNP NTN I K+AP L+ +NFTAM RLDHNRA A+LA K V I
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRI 178
Query: 182 KKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXX 241
+++ VWGNHS +M+PD +A V+G ++++ W + VF+P
Sbjct: 179 RRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME--WYEKVFIPTVAQRGAAIIQARGAS 236
Query: 242 XXXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
I+HI+DW GT +WV+M +PS G Y +P+ I++ FPV K+ Y++++
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHL 327
LEI++F+RK++ ++ +EL +E+ + L
Sbjct: 297 LEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 332 bits (852), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 153/328 (46%), Positives = 222/328 (67%), Gaps = 6/328 (1%)
Query: 2 LKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIE 61
+K PVR+++TGAAGQIGY+++FRIA G++LGKDQP+ILQLLE ++ KA++GV+ME+E
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP--QAMKALEGVVMELE 58
Query: 62 DCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNS 121
DC FPLL + ++P AFKDA+ A+L+G+ PRK+ MER +LL +N IF EQG+AL
Sbjct: 59 DCAFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 122 VASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSI 181
VA +DVKVLVVGNP NTN I K+AP L+ +NFTAM RLDHNRA A+LA K V I
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRI 178
Query: 182 KKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXX 241
+++ VWGNHS M+PD +A V+G ++++ W + VF+P
Sbjct: 179 RRMTVWGNHSSIMFPDLFHAEVDGRPALELVDME--WYEKVFIPTVAQRGAAIIQARGAS 236
Query: 242 XXXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
I+HI+DW GT +WV+M +PS G Y +P+ I++ FPV K+ Y++++
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHL 327
LEI++F+RK++ ++ +EL +E+ + L
Sbjct: 297 LEINEFARKRMEITAQELLDEMEQVKAL 324
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 195/324 (60%), Gaps = 10/324 (3%)
Query: 4 KPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDC 63
+P+R+ +TGAAGQI Y++++ I NG + GKDQPIIL LL+ + + GV+ME++DC
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDC 60
Query: 64 IFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
PLL DV + AFKD ++AIL+GS PR+ MER +LL N IF QG AL+ A
Sbjct: 61 ALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA 120
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
+ VKV+VVGNP NTN KSAP + +NF+ + RLDHNRA A++A KL +K
Sbjct: 121 KKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKN 180
Query: 184 VFVWGNHSLSMYPDYRYATV----NGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXX 239
V +WGNHS + YPD +A V V + + + ++S W K F+
Sbjct: 181 VIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDS-WLKGEFITTVQQRGAAVIKARK 239
Query: 240 XXXXXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDG-SYNVPKDIIFGFPVKIKNSKYKI 296
DH++D FGT +V+MGI SDG SY VP D+++ FPV IK+ +KI
Sbjct: 240 LSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKI 299
Query: 297 IQNLEIDKFSRKKINLSIEELKNE 320
++ L I+ FSR+K++L+ +EL E
Sbjct: 300 VEGLPINDFSREKMDLTAKELAEE 323
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 195/324 (60%), Gaps = 10/324 (3%)
Query: 4 KPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDC 63
+P+R+ +TGAAGQI Y++++ I NG + GKDQPIIL LL+ + + GV+ME++DC
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDC 59
Query: 64 IFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
PLL DV + AFKD ++AIL+GS PR+ MER +LL N IF QG AL+ A
Sbjct: 60 ALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA 119
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
+ VKV+VVGNP NTN KSAP + +NF+ + RLDHNRA A++A KL +K
Sbjct: 120 KKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKN 179
Query: 184 VFVWGNHSLSMYPDYRYATV----NGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXX 239
V +WGNHS + YPD +A V V + + + ++S W K F+
Sbjct: 180 VIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDS-WLKGEFITTVQQRGAAVIKARK 238
Query: 240 XXXXXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDG-SYNVPKDIIFGFPVKIKNSKYKI 296
DH++D FGT +V+MGI SDG SY VP D+++ FPV IK+ +KI
Sbjct: 239 LSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKI 298
Query: 297 IQNLEIDKFSRKKINLSIEELKNE 320
++ L I+ FSR+K++L+ +EL E
Sbjct: 299 VEGLPINDFSREKMDLTAKELAEE 322
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 184/319 (57%), Gaps = 8/319 (2%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
V++++TGAAGQIGY ++ IA G LLG P+ L+LL+ + + KA+ GV E+EDC F
Sbjct: 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDI--EPALKALAGVEAELEDCAF 82
Query: 66 PLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASR 125
PLL V V +P AF IAI+ G+FPRK+ MER +LL +N+ IF EQG+A+ +VA+
Sbjct: 83 PLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAAS 142
Query: 126 DVKVLVVGNPVNTNTYITMKSAPD-LSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKV 184
D +V+VVGNP NTN I +KSA L+ ++ TAM RLDHNRA++ LA K PVS ++ V
Sbjct: 143 DCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNV 202
Query: 185 FVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXXXXX 244
+WGNHS + PD A + R+ I +++ + F+
Sbjct: 203 IIWGNHSSTQVPDTDSAVIGTTPAREAIKDDAL--DDDFVQVVRGRGAEIIQLRGLSSAM 260
Query: 245 XXXXXXIDHIKDWIFGTEN--WVTMGIPSD-GSYNVPKDIIFGFPVKIKNSKYKIIQNLE 301
+DH+ DWI GT +V+MG+ SD Y VP +IF FP ++ ++
Sbjct: 261 SAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSGKL 320
Query: 302 IDKFSRKKINLSIEELKNE 320
++++ +I EL+ E
Sbjct: 321 NGDLGKQRLASTIAELQEE 339
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 195/329 (59%), Gaps = 7/329 (2%)
Query: 3 KKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIED 62
KK V I+++GAAG I +++F++A+G++ G+DQPI L+LL +++S +A++GV ME+ED
Sbjct: 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLL--GSERSFQALEGVAMELED 87
Query: 63 CIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSV 122
++PLL +VS+ +P F+D + A+LIG+ PR MER+ LL IN IF +QGKALN+V
Sbjct: 88 SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIK 182
AS++VKVLVVGNP NTN I +K+APD+ KNF A+ RLD NRA +LA K +
Sbjct: 148 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 207
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXXX 242
V +WGNHS + PD+ A ++G ++++I W + F
Sbjct: 208 NVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK-WLEEEFTITVQKRGGALIQKWGRSS 266
Query: 243 XXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDGS-YNVPKDIIFGFPVKIK-NSKYKIIQ 298
D IK + T +W + G+ + G+ Y + +DI+F P + K + Y++
Sbjct: 267 AASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELAT 326
Query: 299 NLEIDKFSRKKINLSIEELKNEILSISHL 327
++ D F ++I S EL E ++HL
Sbjct: 327 DVSNDDFLWERIKKSEAELLAEKKCVAHL 355
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 198/329 (60%), Gaps = 7/329 (2%)
Query: 3 KKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIED 62
KK + ++++GAAG I +++F++A+G++ G DQPI L+LL +++S A++GV ME+ED
Sbjct: 40 KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLL--GSERSFAALEGVAMELED 97
Query: 63 CIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSV 122
++PLL VS+ +P F+DA A+LIG+ PR MER++LL IN IF EQGKALN+V
Sbjct: 98 SLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAV 157
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIK 182
AS +VKV+VVGNP NTN I +K+AP++ KNF A+ RLD NRA +LA K +
Sbjct: 158 ASPNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVS 217
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXXX 242
V +WGNHS + PD+ A ++G+ + ++I + W ++ F
Sbjct: 218 NVTIWGNHSTTQVPDFLNAKIHGIPVTEVIRDRK-WLEDEFTNMVQTRGGVLIKKWGRSS 276
Query: 243 XXXXXXXXIDHIKDWIFGTE--NWVTMGIPSDGS-YNVPKDIIFGFPVKIK-NSKYKIIQ 298
+D I+ + T +W + G+ ++G+ Y + +DI+F P + K + Y+ ++
Sbjct: 277 AASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVK 336
Query: 299 NLEIDKFSRKKINLSIEELKNEILSISHL 327
++ D + KKI S +EL E ++HL
Sbjct: 337 DVIFDDYLSKKIKKSEDELLAEKKCVAHL 365
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 17/218 (7%)
Query: 7 RISITGAAGQIGYNIIFRIANGDL---LGKDQPIILQLLEASNKKSQKAIKGVIMEIEDC 63
+++I GAAG IG N+ A L L P + L +GV EI C
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGL------------EGVAEEIRHC 57
Query: 64 IFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
F L +++ + A DA + G PRK M R +LL N+ I + GK + S
Sbjct: 58 GFEGL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC 116
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
V+++ NP + +T+ + L T + LD R ++LA S +
Sbjct: 117 PDCKHVIIIFNPADITGLVTLIYS-GLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTN 175
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKN 221
+G H M A VNG + D+I + N+
Sbjct: 176 TRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQ 213
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 76 NPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVKVLVVGNP 135
N A + A++ I+ PRK M R +LL IN + + G + A + V+ + NP
Sbjct: 68 NDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP-EAFVICITNP 126
Query: 136 VNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMY 195
++ + K + ++K LD R L+ + N V + VFV G H SM
Sbjct: 127 LDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVT-VFVLGGHGDSMV 185
Query: 196 PDYRYATVNGVLIRDMI 212
P RY+TV G+ + D++
Sbjct: 186 PLARYSTVAGIPLPDLV 202
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSI-------FIEQGKALNSVASRDVKVLVVGN 134
+D+++ I+ PR M R +LLA N+ I F+E S D ++VV N
Sbjct: 68 EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVE--------GSPDSTIIVVAN 119
Query: 135 PVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSM 194
P++ TY+ +++ + + LD R + +A +L+ V + + + G H +M
Sbjct: 120 PLDVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDV-QALLMGGHGDTM 178
Query: 195 YPDYRYATVNGVLIRDMINN 214
P RY TV G+ + +I++
Sbjct: 179 VPLPRYTTVGGIPVPQLIDD 198
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 122/302 (40%), Gaps = 15/302 (4%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
++++I GA+G++G A LL K +P + L+ + S ++G+ +I D +
Sbjct: 1 MKVTIIGASGRVGS------ATALLLAK-EPFMKDLVLIGREHSINKLEGLREDIYDALA 53
Query: 66 PLLVDVSVH---ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSV 122
D +++ + + ++++ I+ PRK M R +L N+ I + K + +
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI 113
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIK 182
D K+ V+ NPV+ TY + + + F LD R +A + +
Sbjct: 114 C--DTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEV- 170
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXXX 242
+ + G H SM P ++ G+ I+ +
Sbjct: 171 RTRIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEII--EDVKTKGEQIIRLKGGS 228
Query: 243 XXXXXXXXIDHIKDWIFGTENWVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQNLEI 302
++ ++ + + +T+ DG ++ +D+ G PVKI + + ++E+
Sbjct: 229 EFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIEL 288
Query: 303 DK 304
DK
Sbjct: 289 DK 290
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 129/302 (42%), Gaps = 20/302 (6%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
++I++ GA G +G FR+A L + ++L ++E + G +++ +
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQL--ARELVLLDVVEGIPQ-------GKALDMYESGP 50
Query: 66 PLLVDVSV-HENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIE-QGKALNSVA 123
L D V N +++I ++ PRK M R +LL++N+ I E G+ +
Sbjct: 51 VGLFDTKVTGSNDYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEH-- 108
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLR-LDHNRAIAKLASKLNEPVSSIK 182
S++ ++VV NP++ T++ + + L + M LD R + +A +L + +
Sbjct: 109 SKNPIIVVVSNPLDIMTHVAWQKS-GLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVT 167
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXXXXXXXXXXX 242
V G H +M P +Y TV G+ + D+I+ +
Sbjct: 168 AC-VLGGHGDAMVPVVKYTTVAGIPVADLISAERI--AELVERTRTGGAEIVNHLKQGSA 224
Query: 243 XXXXXXXXIDHIKDWIFGTENWVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQNLEI 302
++ ++ + + +T + DG Y + + G PVK+ + + I +++
Sbjct: 225 FYSPATSVVEMVESIVLDRKRVLTCAVSLDGQYGIDGTFV-GVPVKLGKNGVEHIYEIKL 283
Query: 303 DK 304
D+
Sbjct: 284 DQ 285
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 54 KGVIMEIEDCIFPLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF 112
+G +++ L VD+ + N + ++I ++ RK M R +LL N++
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTM 96
Query: 113 IEQGKALNSVASRDVKVLVVGNPVNTNTYITMKSA--PDLSYKNFTAMLRLDHNRAIAKL 170
+ + + + A +D V++ NPV+ TY+ K P F+ + LD R +
Sbjct: 97 ADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGI--LDSARMAYYI 153
Query: 171 ASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNN 215
+ KL S+ + V G H M+P R ++V GV + +++
Sbjct: 154 SQKLGVSFKSVNAI-VLGMHGQKMFPVPRLSSVGGVPLEHLMSKE 197
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 15/209 (7%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
++I++ GA G +G FRIA+ L + ++L ++E + KG+ M E
Sbjct: 1 MKITVIGA-GNVGATTAFRIADKKL--ARELVLLDVVEGIPQG-----KGLDM-YETGPV 51
Query: 66 PLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASR 125
L N D++I I+ PRK M R +LL N+ I E + S+
Sbjct: 52 GLFDTKITGSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMK-HSK 110
Query: 126 DVKVLVVGNPVNTNTYIT-MKSAPDLSYKNFTAMLR-LDHNRAIAKLASKLNEPVSSIKK 183
+ ++VV NP++ T++ ++S L + M LD R + +A +L + I
Sbjct: 111 NPIIIVVSNPLDIMTHVAWVRSG--LPKERVIGMAGVLDAARFRSFIAMELGVSMQDINA 168
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDMI 212
V G H +M P +Y TV G+ I D++
Sbjct: 169 C-VLGGHGDAMVPVVKYTTVAGIPISDLL 196
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 18/219 (8%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
+ISI GA GQIG I + DL + ++E +G +++ C+
Sbjct: 16 KISIIGA-GQIGSTIALLLGQKDL---GDVYMFDIIEG-------VPQGKALDLNHCMAL 64
Query: 67 LLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA-- 123
+ + EN +++++ I+ PRK NM RS+LL +N+ I G +V
Sbjct: 65 IGSPAKIFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIV---GSVAENVGKY 121
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
+ V+ + NP++ Y + + + K LD R L+ L S +
Sbjct: 122 CPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSA 181
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNV 222
+ V G H M P T+ G+L+ D + + +
Sbjct: 182 IVV-GGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQI 219
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 83 DANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVK-------VLVVGNP 135
D+++ ++ RK M R +L+A NS I + S+ +RD+ ++V+ NP
Sbjct: 78 DSDVVVITAGIARKPGMSRDDLVATNSKI-------MKSI-TRDIAKHSPNAIIVVLTNP 129
Query: 136 VNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMY 195
V+ TY K A + LD R +A +LN V I FV G H M
Sbjct: 130 VDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITG-FVLGGHGDDMV 188
Query: 196 PDYRYATVNGVLIRDMI 212
P RY+ G+ + +I
Sbjct: 189 PLVRYSYAGGIPLETLI 205
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 17/210 (8%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
++I++ GA G +G FR+A L + ++L ++E + G +++ +
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQL--ARELVLLDVVEGIPQ-------GKALDMYESGP 50
Query: 66 PLLVDVSV-HENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVAS 124
L D V N +++I I+ PRK M R +LL N+ I E + S
Sbjct: 51 VGLFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMK-HS 109
Query: 125 RDVKVLVVGNPVNTNTYIT-MKSAPDLSYKNFTAMLR-LDHNRAIAKLASKLNEPVSSIK 182
++ ++VV NP++ T++ ++S L + M LD R + +A +L + I
Sbjct: 110 KNPIIIVVSNPLDIMTHVAWVRSG--LPKERVIGMAGVLDAARFRSFIAMELGVSMQDIN 167
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDMI 212
V G H +M P +Y TV G+ I D++
Sbjct: 168 AC-VLGGHGDAMVPVVKYTTVAGIPISDLL 196
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 66 PLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASR 125
P +++ K +++ I+ P+K R +LL N+ + E + ++ A
Sbjct: 50 PFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP- 108
Query: 126 DVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVF 185
D V+VV NPV+ TY +K + K F + LD R +A S+ V+
Sbjct: 109 DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSV-HVY 167
Query: 186 VWGNHSLSMYPDYRYATVNGVLIRDMIN 213
V G H S P + A + G+ +++M
Sbjct: 168 VIGEHGDSEVPVWSGAMIGGIPLQNMCQ 195
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 81 FKDANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNP 135
K A++ I+ F P KS+ E R +LL +N+ I IE G + ++ + ++VV NP
Sbjct: 69 LKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCP-NAFIIVVTNP 127
Query: 136 VNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMY 195
V+ + + + K LD +R ++ KLN + + V G H M
Sbjct: 128 VDVMVQLLFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIV-GAHGNKMV 186
Query: 196 PDYRYATVNGVLIRDMINNNSFWNKNV 222
RY TV G+ +++ INN ++ V
Sbjct: 187 LLKRYITVGGIPLQEFINNKKITDEEV 213
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 81 FKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNT 140
K + I ++ RK M R +L N+ I + K + A + K+LVV NP++ T
Sbjct: 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMT 125
Query: 141 YITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRY 200
YI K + + F +LD R +L N +I++ ++ G H SM+
Sbjct: 126 YIMWKESGKPRNEVFGMGNQLDSQRLKERL---YNAGARNIRRAWIIGEHGDSMFVAKSL 182
Query: 201 ATVNGVLIRDMINNN 215
A +G + + + N+
Sbjct: 183 ADFDGEVDWEAVEND 197
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 81 FKDANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNP 135
KDA++ I+ F P KS+ E R +LL +N+ I IE G + + + ++VV NP
Sbjct: 70 LKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKN-NCPNAFIIVVTNP 128
Query: 136 VNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMY 195
V+ + + + K LD +R ++ KLN + + G H M
Sbjct: 129 VDVMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMV 187
Query: 196 PDYRYATVNGVLIRDMINNNSFWNKNV 222
RY TV G+ +++ INN ++ +
Sbjct: 188 LLKRYITVGGIPLQEFINNKKITDQEL 214
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 54 KGVIMEIEDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF- 112
KG +++ED + P ++ + KDA++ ++ P+K R +L+ N I
Sbjct: 48 KGDAIDLEDAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK 106
Query: 113 ------IEQGKALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRA 166
++ G N + LV NPV+ TY T K + + + LD R
Sbjct: 107 SIVDPIVDSG--FNGI------FLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARF 158
Query: 167 IAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMI 212
+A +N S+ ++ G H + +P + +A + GV I + +
Sbjct: 159 RQSIAKMVNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWV 203
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 83 DANIAILIGSFPRKSNMERSELLAINSSI---FIEQGKALNSVASRDVKVLVVGNPVNTN 139
++++ ++ PRK M R +L+ +N+ I I Q L S + +++V NP++
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAM 125
Query: 140 TYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYR 199
TY+ + + + LD R +A + V ++ + + G H M P R
Sbjct: 126 TYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLM-GGHGDEMVPLPR 184
Query: 200 YATVNGVLIRDMI 212
++T++G+ + + I
Sbjct: 185 FSTISGIPVSEFI 197
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 83 DANIAILIGSFPRKSNMERSELLAINSSI---FIEQGKALNSVASRDVKVLVVGNPVNTN 139
++++ ++ PRK M R +L+ +N+ I I Q L S + +++V NP++
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAM 125
Query: 140 TYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYR 199
TY+ + + + LD R +A + V ++ + + G H M P R
Sbjct: 126 TYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM-GGHGDEMVPLPR 184
Query: 200 YATVNGVLIRDMI 212
++T++G+ + + I
Sbjct: 185 FSTISGIPVSEFI 197
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 97/266 (36%), Gaps = 5/266 (1%)
Query: 54 KGVIMEIEDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFI 113
KG +++ED ++ + KDA++ ++ P+K R +L+ N +I
Sbjct: 44 KGDALDLEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILS 102
Query: 114 EQGKALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASK 173
K + + D LV NPV+ TY T K + + + LD +R L +
Sbjct: 103 SIVKPVVD-SGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQ 161
Query: 174 LNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPXXXXXXXX 233
N S+ ++ G H S + Y AT+ +RD+ + ++
Sbjct: 162 FNVDPRSV-DAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKA 220
Query: 234 XXXXXXXXXXXXXXXXXIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGFPVKIKNS 292
+ I I EN V +G DG Y + DI G P I +
Sbjct: 221 YDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGT 279
Query: 293 KYKIIQNLEIDKFSRKKINLSIEELK 318
K I + KK+ S LK
Sbjct: 280 GLKQIIESPLSADELKKMQDSAATLK 305
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 83 DANIAILIGSFPRKSNMERSELLAINSSI---FIEQGKALNSVASRDVKVLVVGNPVNTN 139
++++ ++ PRK M R +L+ +N+ I I Q L S + +++V NP++
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAM 125
Query: 140 TYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYR 199
TY+ + + + LD R +A + V ++ + + G H M P R
Sbjct: 126 TYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLM-GGHGDEMVPLPR 184
Query: 200 YATVNGVLIRDMI 212
++T++G+ + + I
Sbjct: 185 FSTISGIPVSEFI 197
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 83 DANIAILIGSFPRKSNMERSELLAINSSI---FIEQGKALNSVASRDVKVLVVGNPVNTN 139
++++ ++ PRK M R +L+ +N+ I I Q L S + +++V NP++
Sbjct: 70 NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAM 125
Query: 140 TYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYR 199
TY+ + + + LD R +A + V ++ + + G H M P R
Sbjct: 126 TYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM-GGHGDEMVPLPR 184
Query: 200 YATVNGVLIRDMI 212
++ ++G+ + + I
Sbjct: 185 FSCISGIPVSEFI 197
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 79 TAFKDANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVG 133
A A+ I+ P K + E R++LL NS I E G+ + + ++VV
Sbjct: 74 AALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVT 132
Query: 134 NPVNTNTYITMKSAPDLSYKNFTAM-LRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSL 192
NP++ + M A + M LD R +A L+ ++ V G H
Sbjct: 133 NPLDCMVKV-MXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGD 190
Query: 193 SMYPDYRYATVNGVLIRDMINNNSFWNKNV 222
M P RY TVNG I+ I + K +
Sbjct: 191 CMVPLVRYITVNGYPIQKFIKDGVVTEKQL 220
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 79 TAFKDANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVG 133
A A+ I+ P K + E R++LL NS I E G+ + + ++VV
Sbjct: 72 AALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVT 130
Query: 134 NPVNTNTYITMKSAPDLSYKNFTAM-LRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSL 192
NP++ + M A + M LD R +A L+ ++ V G H
Sbjct: 131 NPLDCMVKV-MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGD 188
Query: 193 SMYPDYRYATVNGVLIRDMINNNSFWNKNV 222
M P RY TVNG I+ I + K +
Sbjct: 189 CMVPLVRYITVNGYPIQKFIKDGVVTEKQL 218
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 79 TAFKDANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVG 133
A A+ I+ P K + E R++LL NS I E G+ + + ++VV
Sbjct: 74 AALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVT 132
Query: 134 NPVNTNTYITMKSAPDLSYKNFTAM-LRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSL 192
NP++ + M A + M LD R +A L+ ++ V G H
Sbjct: 133 NPLDCMVKV-MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGD 190
Query: 193 SMYPDYRYATVNGVLIRDMINNNSFWNKNV 222
M P RY TVNG I+ I + K +
Sbjct: 191 CMVPLVRYITVNGYPIQKFIKDGVVTEKQL 220
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 12/207 (5%)
Query: 4 KPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDC 63
KP ++++ GA G +G + F A G + I+L+ + K + + + M+
Sbjct: 6 KPTKLAVIGA-GAVGSTLAFAAAQ---RGIAREIVLEDI----AKERVEAEVLDMQHGSS 57
Query: 64 IFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
+P V + ++P +DA++ ++ +K R EL+ +I L VA
Sbjct: 58 FYPT-VSIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA 115
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
+ +L+ NPV+ T++ K + F + LD R +A + V ++
Sbjct: 116 PNAIYMLIT-NPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVH- 173
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRD 210
++ G H S P + AT+ GV + D
Sbjct: 174 AYIAGEHGDSEVPLWESATIGGVPMSD 200
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 84 ANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNT 138
A++ I+ F P KS+ E R +LL +N+ I IE G + + ++VV NPV+
Sbjct: 73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDV 131
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDY 198
+ + + K LD +R ++ KLN + + G H M
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMVLLK 190
Query: 199 RYATVNGVLIRDMINN 214
RY TV G+ +++ INN
Sbjct: 191 RYITVGGIPLQEFINN 206
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIF-------IEQGKALNSVASRDVKVLVVGN 134
KDA++ ++ P+K R +L+ N I ++ G N + LV N
Sbjct: 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG--FNGI------FLVAAN 126
Query: 135 PVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSM 194
PV+ TY T K + + + LD R +A +N S+ ++ G H +
Sbjct: 127 PVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTE 185
Query: 195 YPDYRYATVNGVLIRDMI 212
+P + +A + GV I + +
Sbjct: 186 FPVWSHANIGGVTIAEWV 203
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 84 ANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNT 138
A++ I+ F P KS+ E R +LL +N+ I IE G + + ++VV NPV+
Sbjct: 72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDV 130
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDY 198
+ + + K LD +R ++ KLN + + G H M
Sbjct: 131 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMVLLK 189
Query: 199 RYATVNGVLIRDMINN 214
RY TV G+ +++ INN
Sbjct: 190 RYITVGGIPLQEFINN 205
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 84 ANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNT 138
A++ I+ F P KS+ E R +LL +N+ I IE G + + ++VV NPV+
Sbjct: 72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDV 130
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDY 198
+ + + K LD +R ++ KLN + + G H M
Sbjct: 131 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMVLLK 189
Query: 199 RYATVNGVLIRDMINN 214
RY TV G+ +++ INN
Sbjct: 190 RYITVGGIPLQEFINN 205
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 84 ANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNT 138
A++ I+ F P KS+ E R +LL +N+ I IE G + + ++VV NPV+
Sbjct: 73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDV 131
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDY 198
+ + + K LD +R ++ KLN + + G H M
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMVLLK 190
Query: 199 RYATVNGVLIRDMINN 214
RY TV G+ +++ INN
Sbjct: 191 RYITVGGIPLQEFINN 206
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 66/153 (43%), Gaps = 39/153 (25%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLL------------EASNKKSQKAIK 54
++++ GA+G IG + LL K+ P++ +L + S+ +++ +K
Sbjct: 2 KVAVLGASGGIGQPL-------SLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVK 54
Query: 55 GVI--MEIEDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF 112
G + ++ DC+ K ++ ++ PRK M R +L N++I
Sbjct: 55 GYLGPEQLPDCL-----------------KGCDVVVIPAGVPRKPGMTRDDLFNTNATI- 96
Query: 113 IEQGKALNSVASRDVKVLVVGNPVNTNTYITMK 145
+ A + D + ++ NPVN+ IT +
Sbjct: 97 VATLTAACAQHCPDAMICIISNPVNSTIPITAE 129
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVK------VLVVGNP 135
KDA++ ++ P++ R +L+ N I L S+ V LV NP
Sbjct: 74 KDADLVVITAGAPKQPGETRLDLVNKNLKI-------LKSIVDPIVDSGFNLIFLVAANP 126
Query: 136 VNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMY 195
V+ TY T K + + + LD R +A +N S+ ++ G H + +
Sbjct: 127 VDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEF 185
Query: 196 PDYRYATVNGVLIRDMI 212
P + +A + GV I + +
Sbjct: 186 PVWSHANIGGVTIAEWV 202
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 84 ANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNT 138
+++ I+ F P KS+ E R +LL +N+ I IE G + + ++VV NPV+
Sbjct: 73 SDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDV 131
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDY 198
+ + + K LD +R ++ KLN + + G H M
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMVLLK 190
Query: 199 RYATVNGVLIRDMINN 214
RY TV G+ +++ INN
Sbjct: 191 RYITVGGIPLQEFINN 206
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 13/193 (6%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
++++ GAAG IG + + N G D L L + + GV ++
Sbjct: 5 KVAVIGAAGGIGQALALLLKNRLPAGSD----LALYDIA-----PVTPGVAADLSHIPTH 55
Query: 67 LLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRD 126
+ + E+P A + A++ ++ RK +R++L +N+ I + + +V +
Sbjct: 56 VSIKGYAGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERI-AVVCPN 114
Query: 127 VKVLVVGNPVNTNTYIT---MKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
+ ++ NPVNT I +K A + + LD R+ +A + ++
Sbjct: 115 ACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRV 174
Query: 184 VFVWGNHSLSMYP 196
+ G+ +++ P
Sbjct: 175 PVIGGHSGVTILP 187
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 13/214 (6%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M+K +++I GA G +G + F +A ++ +++ + + +KAI G M+I
Sbjct: 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQT--ANELVLIDVFK------EKAI-GEAMDI 52
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALN 120
+ P + +S++ + KD ++ ++ RK R +L N I E + +
Sbjct: 53 NHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIM 111
Query: 121 SVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSS 180
+ V +LVV NPV+ TY+ K + K + LD R L+ KL V +
Sbjct: 112 KYYNHGV-ILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKN 170
Query: 181 IKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINN 214
+ ++ G H S P + + G I + I++
Sbjct: 171 VHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDD 203
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
+I++ G GQ+G I LGK L L++ K +KG +M+++
Sbjct: 22 KITVVGV-GQVGMACAISI-----LGKSLADELALVDVLEDK----LKGEMMDLQHGSLF 71
Query: 67 LLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSVA 123
L V + + ++ I ++ ++ R L+ N ++F I Q
Sbjct: 72 LQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY---- 127
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
S D ++VV NPV+ TY+T K + ++ + LD R +A KL SS
Sbjct: 128 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHG 187
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDM 211
++ G H S + V GV ++++
Sbjct: 188 -WILGEHGDSSVAVWSGVNVAGVSLQEL 214
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 94 PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLS 151
P KS+ E R++LL N+ I E + + V+VV NP++ A L
Sbjct: 90 PGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF-VIVVTNPLDCMVK-CFHEASGLP 147
Query: 152 YKNFTAMLR-LDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRD 210
M LD R +A +L I+ V G H M P RY TVNG +R+
Sbjct: 148 KNMVCGMANVLDSARFRRFIADQLEISPRDIQAT-VIGTHGDHMLPLARYVTVNGFPLRE 206
Query: 211 MINNN 215
I
Sbjct: 207 FIKKG 211
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
+I++ G GQ+G I LGK L L++ K +KG +M+++
Sbjct: 22 KITVVGV-GQVGMACAISI-----LGKSLADELALVDVLEDK----LKGEMMDLQHGSLF 71
Query: 67 LLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSVA 123
L V + + ++ I ++ ++ R L+ N ++F I Q
Sbjct: 72 LQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY---- 127
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
S D ++VV NPV+ TY+T K + ++ + LD R +A KL SS
Sbjct: 128 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHG 187
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDM 211
++ G H S + V GV ++++
Sbjct: 188 -WILGEHGDSSVAVWSGVNVAGVSLQEL 214
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 84 ANIAILIGSF---PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNT 138
+++ I+ F P KS+ E R +LL +N+ I IE G + + ++VV NPV+
Sbjct: 73 SDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDV 131
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDY 198
+ + + K LD +R ++ KLN + + G H M
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMVLLK 190
Query: 199 RYATVNGVLIRDMINN 214
RY TV G+ +++ INN
Sbjct: 191 RYITVGGIPLQEFINN 206
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 94 PRKSNME--RSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLS 151
P KS+ E R++LL N+ I E + + V+VV NP++ A L
Sbjct: 90 PGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF-VIVVTNPLDCMVK-CFHEASGLP 147
Query: 152 YKNFTAMLR-LDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRD 210
M LD R +A +L I+ V G H M P RY TVNG +R+
Sbjct: 148 KNMVCGMANVLDSARFRRFIADQLEISPRDIQAT-VIGTHGDHMLPLARYVTVNGFPLRE 206
Query: 211 MINNN 215
I
Sbjct: 207 FIKKG 211
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 20/196 (10%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPII--LQLLEASNKKSQKAIKGVIMEIEDCI 64
+++I GAAG IG + +L K P++ L L + N GV +I
Sbjct: 10 KVAILGAAGGIGQPLA-------MLMKMNPLVSVLHLYDVVNAP------GVTADISHMD 56
Query: 65 FPLLVDVSVHENPI-TAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
+V + + + A ++ I+ PRK M R +L IN+ I + +
Sbjct: 57 TGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC 116
Query: 124 SRDVKVLVVGNPVNTNTYIT---MKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSS 180
R + V ++ NPVN+ I K A K + LD RA +A L
Sbjct: 117 PRAI-VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRD 175
Query: 181 IKKVFVWGNHSLSMYP 196
+ V G+ +++ P
Sbjct: 176 VDVPVVGGHAGVTILP 191
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 20/196 (10%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPII--LQLLEASNKKSQKAIKGVIMEIEDCI 64
+++I GAAG IG + +L K P++ L L + N GV +I
Sbjct: 46 KVAILGAAGGIGQPLA-------MLMKMNPLVSVLHLYDVVNAP------GVTADISHMD 92
Query: 65 FPLLVDVSVHENPI-TAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
+V + + + A ++ I+ PRK M R +L IN+ I + +
Sbjct: 93 TGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC 152
Query: 124 SRDVKVLVVGNPVNTNTYIT---MKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSS 180
R + V ++ NPVN+ I K A K + LD RA +A L
Sbjct: 153 PRAI-VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRD 211
Query: 181 IKKVFVWGNHSLSMYP 196
+ V G+ +++ P
Sbjct: 212 VDVPVVGGHAGVTILP 227
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
S D K++VV NPV+ TY+ K + + + LD R + KL +S
Sbjct: 127 SPDCKIIVVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHG 186
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDM 211
+V G H S P + V GV ++ +
Sbjct: 187 -WVLGEHGDSSVPIWSGVNVAGVTLKSL 213
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLN-EPVSSIK 182
S + K+LVV NPV+ TY+ K + + + LD R + +L P+S
Sbjct: 128 SPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSC-- 185
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDM 211
++ G H S P + V GV ++++
Sbjct: 186 HGWILGEHGDSSVPVWSGVNVAGVSLKNL 214
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLN-EPVSSIK 182
S K+L+V NPV+ TY+ K + + + LD R + +L P+S
Sbjct: 127 SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSC-- 184
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDM 211
+V G H S P + V GV ++ +
Sbjct: 185 HGWVLGEHGDSSVPVWSGVNVAGVSLKSL 213
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 18/208 (8%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
+I++ G GQ+G I LGK L L++ K +KG +M+++
Sbjct: 23 KITVVGV-GQVGMACAISI-----LGKSLTDELALVDVLEDK----LKGEMMDLQHGSLF 72
Query: 67 LLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSVA 123
L V + ++ I ++ ++ R L+ N ++F I Q
Sbjct: 73 LQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY---- 128
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
S + ++VV NPV+ TY+ K + ++ + LD R + KL SS
Sbjct: 129 SPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHG 188
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDM 211
++ G H S + V GV+++ +
Sbjct: 189 -WILGEHGDSSVAVWSGVNVAGVVLQQL 215
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLN-EPVSSIK 182
S K+L+V NPV+ TY+ K + + + LD R + +L P+S
Sbjct: 128 SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSC-- 185
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDM 211
+V G H S P + V GV ++ +
Sbjct: 186 HGWVLGEHGDSSVPVWSGVNVAGVSLKSL 214
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLN-EPVSSIK 182
S + K+L+V NPV+ TY+ K + + + LD R + +L P+S
Sbjct: 127 SPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSC-- 184
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDM 211
+V G H S P + V GV ++ +
Sbjct: 185 HGWVLGEHGDSSVPVWSGMNVAGVSLKTL 213
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLN-EPVSSIK 182
S + K+L+V NPV+ TY+ K + + + LD R + +L P+S
Sbjct: 127 SPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSC-- 184
Query: 183 KVFVWGNHSLSMYPDYRYATVNGVLIRDM 211
+V G H S P + V GV ++ +
Sbjct: 185 HGWVLGEHGDSSVPVWSGMNVAGVSLKTL 213
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 44/222 (19%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
+I++ G+ GQIG NI + ++GKD + L + + Q K + + +F
Sbjct: 6 KIAVIGS-GQIGGNIAY------IVGKDNLADVVLFDIAEGIPQG--KALDITHSMVMFG 56
Query: 67 LLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRD 126
V + N +++ I+ S P + +RSELL N+ I L+SVA
Sbjct: 57 STSKV-IGTNDYADISGSDVVIITASIPGRPKDDRSELLFGNARI-------LDSVAEGV 108
Query: 127 VKVLVVGNPVNTNTYITMKSAP-DLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVF 185
K N ++ + P D+ +F + L HN+ + +A L+ SS + F
Sbjct: 109 KKYC-------PNAFVICITNPLDVMVSHFQKVSGLPHNK-VCGMAGVLD---SSRFRTF 157
Query: 186 ---------------VWGNHSLSMYPDYRYATVNGVLIRDMI 212
V G H M P +V GV + I
Sbjct: 158 IAQHFGVNASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFI 199
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 129 VLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWG 188
++VV NPV+ TY+ K + ++ + LD R + KL+ SS V G
Sbjct: 132 LMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIV-G 190
Query: 189 NHSLSMYPDYRYATVNGVLIRDM 211
H S P + V GV ++ +
Sbjct: 191 EHGDSSVPVWSGVNVAGVSLQGL 213
>pdb|3KWV|C Chain C, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|F Chain F, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
Length = 263
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 302 IDKFSRKKINLSIEELKNE 320
+DKF+ ++INLS+EELK++
Sbjct: 244 MDKFNEQEINLSLEELKDQ 262
>pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
pdb|1PWP|A Chain A, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWP|B Chain B, Crystal Structure Of The Anthrax Lethal Factor Complexed
With Small Molecule Inhibitor Nsc 12155
pdb|1PWQ|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWQ|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
Thioacetyl-Tyr-Pro-Met-Amide, A Metal-Chelating Peptidyl
Small Molecule Inhibitor
pdb|1PWV|A Chain A, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1PWV|B Chain B, Crystal Structure Of Anthrax Lethal Factor Wild-Type
Protein Complexed With An Optimised Peptide Substrate.
pdb|1ZXV|A Chain A, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid.
pdb|1ZXV|B Chain B, X-Ray Crystal Structure Of The Anthrax Lethal Factor Bound
To A Small Molecule Inhibitor, Bi-Mfm3,
3-{5-[5-(4-Chloro-
Phenyl)-Furan-2-Ylmethylene]-4-Oxo-2-Thioxo-Thiazolidin-
3- Yl}-Propionic Acid
Length = 776
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 302 IDKFSRKKINLSIEELKNE 320
+DKF+ ++INLS+EELK++
Sbjct: 244 MDKFNEQEINLSLEELKDQ 262
>pdb|1PWU|A Chain A, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWU|B Chain B, Crystal Structure Of Anthrax Lethal Factor Complexed With
(3-(n-hydroxycarboxamido)-2-isobutylpropanoyl-trp-
Methylamide), A Known Small Molecule Inhibitor Of Matrix
Metalloproteases.
pdb|1PWW|A Chain A, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc.
pdb|1PWW|B Chain B, Crystal Structure Of Anthrax Lethal Factor Active Site
Mutant Protein Complexed With An Optimised Peptide
Substrate In The Presence Of Zinc
Length = 776
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 302 IDKFSRKKINLSIEELKNE 320
+DKF+ ++INLS+EELK++
Sbjct: 244 MDKFNEQEINLSLEELKDQ 262
>pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At2g19940
pdb|1XYG|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At2g19940
pdb|1XYG|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At2g19940
pdb|1XYG|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At2g19940
pdb|2Q49|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
Length = 359
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 3 KKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIED 62
+K +RI + GA+G G I+ +AN P L +++K+ ++++ V +
Sbjct: 14 EKDIRIGLLGASGYTGAEIVRLLAN-------HPHFQVTLMTADRKAGQSMESVFPHLRA 66
Query: 63 CIFPLLVDV 71
P LV V
Sbjct: 67 QKLPTLVSV 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,555,557
Number of Sequences: 62578
Number of extensions: 311058
Number of successful extensions: 942
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 83
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)