RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9582
(329 letters)
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 449 bits (1158), Expect = e-160
Identities = 199/329 (60%), Positives = 266/329 (80%), Gaps = 2/329 (0%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M K P+R+++TGAAGQI Y+++FRIANGD+LGKDQP+ILQLLE N+K+QKA++GV+MEI
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALN 120
+DC FPLL ++ H +P+TAFKDA++A+L+G+ PR MER +LL N+ IF QGKA++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 121 SVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSS 180
+VASR++KVLVVGNP NTN YI MKSAP L KNFTAMLRLDHNRA++++A+K +PVSS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 181 IKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRRGEEIISIRGA 240
I+K+FVWGNHS +MY DYRYA ++G ++DMIN+++ WN++ FLP + +RG II RG
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDA-WNRDTFLPTVGKRGAAIIDARGV 239
Query: 241 SSAASAASAAIDHIKDWIFGTEN-WVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
SSAASAA+AAIDHI DW+ GT W TMGIPSDGSY +P+ +IFGFPV +N +YKI+Q
Sbjct: 240 SSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQG 299
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHLI 328
L ID FS+++IN+++ EL E + HL+
Sbjct: 300 LSIDAFSQERINVTLNELLEEQNGVQHLL 328
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 433 bits (1116), Expect = e-154
Identities = 169/328 (51%), Positives = 243/328 (74%), Gaps = 6/328 (1%)
Query: 2 LKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIE 61
+K PVR+++TGAAGQIGY+++FRIA G++LGKDQP+ILQLLE ++ KA++GV+ME+E
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLE--IPQAMKALEGVVMELE 58
Query: 62 DCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNS 121
DC FPLL + ++P AFKDA+ A+L+G+ PRK+ MER +LL +N IF EQG+AL
Sbjct: 59 DCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118
Query: 122 VASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSI 181
VA +DVKVLVVGNP NTN I K+AP L+ +NFTAM RLDHNRA A+LA K V I
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRI 178
Query: 182 KKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRRGEEIISIRGAS 241
+++ VWGNHS +M+PD +A V+G ++++ W + VF+P +++RG II RGAS
Sbjct: 179 RRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME--WYEKVFIPTVAQRGAAIIQARGAS 236
Query: 242 SAASAASAAIDHIKDWIFGTE--NWVTMGIPSDGSYNVPKDIIFGFPVKIKNSKYKIIQN 299
SAASAA+AAI+HI+DW GT +WV+M +PS G Y +P+ I++ FPV K+ Y++++
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 300 LEIDKFSRKKINLSIEELKNEILSISHL 327
LEI++F+RK++ ++ +EL +E+ + L
Sbjct: 297 LEINEFARKRMEITAQELLDEMEQVKAL 324
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 419 bits (1078), Expect = e-147
Identities = 135/332 (40%), Positives = 208/332 (62%), Gaps = 7/332 (2%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
KK V I+++GAAG I +++F++A+G++ G+DQPI L+LL +++S +A++GV ME+
Sbjct: 28 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLG--SERSFQALEGVAMEL 85
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALN 120
ED ++PLL +VS+ +P F+D + A+LIG+ PR MER+ LL IN IF +QGKALN
Sbjct: 86 EDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALN 145
Query: 121 SVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSS 180
+VAS++VKVLVVGNP NTN I +K+APD+ KNF A+ RLD NRA +LA K
Sbjct: 146 AVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205
Query: 181 IKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRRGEEIISIRGA 240
+ V +WGNHS + PD+ A ++G ++++I W + F + +RG +I G
Sbjct: 206 VSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK-WLEEEFTITVQKRGGALIQKWGR 264
Query: 241 SSAASAASAAIDHIKDWIFGTE--NWVTMGIPSDGS-YNVPKDIIFGFPVKI-KNSKYKI 296
SSAAS A + D IK + T +W + G+ + G+ Y + +DI+F P + + Y++
Sbjct: 265 SSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYEL 324
Query: 297 IQNLEIDKFSRKKINLSIEELKNEILSISHLI 328
++ D F ++I S EL E ++HL
Sbjct: 325 ATDVSNDDFLWERIKKSEAELLAEKKCVAHLT 356
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 412 bits (1060), Expect = e-145
Identities = 149/332 (44%), Positives = 210/332 (63%), Gaps = 10/332 (3%)
Query: 4 KPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDC 63
+P+R+ +TGAAGQI Y++++ I NG + GKDQPIIL LL+ + GV+ME++DC
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLD--ITPMMGVLDGVLMELQDC 59
Query: 64 IFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
PLL DV + AFKD ++AIL+GS PR+ MER +LL N IF QG AL+ A
Sbjct: 60 ALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA 119
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
+ VKV+VVGNP NTN KSAP + +NF+ + RLDHNRA A++A KL +K
Sbjct: 120 KKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKN 179
Query: 184 VFVWGNHSLSMYPDYRYATVNG----VLIRDMINNNSFWNKNVFLPAISRRGEEIISIRG 239
V +WGNHS + YPD +A V V + + + ++S W K F+ + +RG +I R
Sbjct: 180 VIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDS-WLKGEFITTVQQRGAAVIKARK 238
Query: 240 ASSAASAASAAIDHIKDWIFGTEN--WVTMGIPSDG-SYNVPKDIIFGFPVKIKNSKYKI 296
SSA SAA A DH++D FGT +V+MGI SDG SY VP D+++ FPV IK+ +KI
Sbjct: 239 LSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKI 298
Query: 297 IQNLEIDKFSRKKINLSIEELKNEILSISHLI 328
++ L I+ FSR+K++L+ +EL E + +
Sbjct: 299 VEGLPINDFSREKMDLTAKELAEEKETAFEFL 330
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 319 bits (820), Expect = e-109
Identities = 76/327 (23%), Positives = 126/327 (38%), Gaps = 16/327 (4%)
Query: 4 KPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDC 63
+++I GAAG IG N+ A L + L L + ++GV EI C
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMMRL-TPN----LCLYDPF----AVGLEGVAEEIRHC 57
Query: 64 IFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVA 123
F L +++ + A DA + G PRK M R +LL N+ I + GK + S
Sbjct: 58 GFEGL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC 116
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKK 183
V+++ NP + +T+ + L T + LD R ++LA S +
Sbjct: 117 PDCKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTN 175
Query: 184 VFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNV--FLPAISRRGEEIISIRGAS 241
+G H M A VNG + D+I + N+ + + G II +RG S
Sbjct: 176 TRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRS 235
Query: 242 SAASAASAAIDHIKDWIFGTENWVTMGIPSDGSYNVPKDIIFGFPVKI-KNSKYKIIQNL 300
S S + +I+ I+ + G G + + I+ I K+ N
Sbjct: 236 SFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNV-PGF-EHIMMAMETTITKDGVKHSDINQ 293
Query: 301 EIDKFSRKKINLSIEELKNEILSISHL 327
++ R + S L + +
Sbjct: 294 LGNEAERAALKESYSHLAKLRDEVIAM 320
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 95.7 bits (239), Expect = 6e-23
Identities = 67/343 (19%), Positives = 136/343 (39%), Gaps = 51/343 (14%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
++++I GA+G++G +A + ++L K +G+ +I D +
Sbjct: 1 MKVTIIGASGRVGSATALLLAKEPFMKD---LVLIGR---EHSINKL-EGLREDIYDALA 53
Query: 66 PLLVDVSVH---ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSV 122
D +++ + + ++++ I+ PRK M R +L N+ I A
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIV--GKYAKKIA 111
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------AKL 170
D K+ V+ NPV+ TY + + + + N+ +
Sbjct: 112 EICDTKIFVITNPVDVMTYKALVDS------------KFERNQVFGLGTHLDSLRFKVAI 159
Query: 171 ASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR 230
A + + + + G H SM P ++ G+ I+ K + + I
Sbjct: 160 AKFFGVHIDEV-RTRIIGEHGDSMVPLLSATSIGGIPIQKFER-----FKELPIDEIIED 213
Query: 231 ----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGF 285
GE+II ++G S AA+ ++ I E + T+ DG ++ +D+ G
Sbjct: 214 VKTKGEQIIRLKGGSEFGPAAAIL--NVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGV 271
Query: 286 PVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
PVKI ++ +++ ++E+DK S E +K + +L
Sbjct: 272 PVKIGRDGIEEVV-SIELDKDEIIAFRKSAEIIKKYCEEVKNL 313
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 87.9 bits (219), Expect = 5e-20
Identities = 83/346 (23%), Positives = 141/346 (40%), Gaps = 57/346 (16%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIAN---GDLLGKDQPIILQLLEASNKKSQKAIKGVI 57
M K ++S+ GA G G F +A D++ D + KG
Sbjct: 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVD----------IPQLENPT-KGKA 51
Query: 58 MEIEDCIFPLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQG 116
+++ + D ++ + D+++ ++ RK M R +L+A NS I
Sbjct: 52 LDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSIT 111
Query: 117 KALNSVASRDVKVLVVGNPVNTNTYITMKSA--PDLSYKNFTAMLR-------LDHNRAI 167
+ + + + ++V+ NPV+ TY K A P K R LD R
Sbjct: 112 RDIAKHSP-NAIIVVLTNPVDAMTYSVFKEAGFP----KE-----RVIGQSGVLDTARFR 161
Query: 168 AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAI 227
+A +LN V I FV G H M P RY+ G+ + +I L AI
Sbjct: 162 TFIAQELNLSVKDI-TGFVLGGHGDDMVPLVRYSYAGGIPLETLIPKER-------LEAI 213
Query: 228 SRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS----DGSYNVPK 279
R G EI+ + G SA A +A++ + + I + V +P+ +G Y
Sbjct: 214 VERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRV---LPAIAYLEGEYGY-S 269
Query: 280 DIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSI 324
D+ G PV + N KII LE+ ++ ++ S+E ++N + +
Sbjct: 270 DLYLGVPVILGGNGIEKII-ELELLADEKEALDRSVESVRNVMKVL 314
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 87.6 bits (218), Expect = 6e-20
Identities = 59/265 (22%), Positives = 114/265 (43%), Gaps = 35/265 (13%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTY 141
+++++ I+ PRK M R +LL IN + G+ + + V+ + NP++
Sbjct: 72 ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCP-NAFVICITNPLDIMVN 130
Query: 142 ITMKSA--PDLSYKNFTAMLR-------LDHNRAIAKLASKLNEPVSSIKKVFVWGNHSL 192
+ K + P N + LD R LA +LN V + + +V G H
Sbjct: 131 MLQKFSGVP----DN-----KIVGMAGVLDSARFRTFLADELNVSVQQV-QAYVMGGHGD 180
Query: 193 SMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----GEEIISIRGASSAASAAS 248
+M P + + V GV + ++ + L AI R G EI+++ SA A +
Sbjct: 181 TMVPLTKMSNVAGVSLEQLVKEGKLKQER--LDAIVSRTRSGGGEIVALLKTGSAYYAPA 238
Query: 249 AAIDHIKDWIFGTENWVTMGIPS-----DGSYNVPKDIIFGFPVKIKNSKYKIIQNLEID 303
AA + + + + +P G Y + +D+ G P +I + + I +EI
Sbjct: 239 AAGIQMAESFLKDKKMI---LPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EVEIS 294
Query: 304 KFSRKKINLSIEELKNEILSISHLI 328
R+++ +SI +K+ + + ++
Sbjct: 295 DKEREQLQVSINAIKDLNKAAAEIL 319
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 87.6 bits (218), Expect = 8e-20
Identities = 69/349 (19%), Positives = 131/349 (37%), Gaps = 54/349 (15%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
+ +ISI GA GQIG I + DL + ++E +G +++
Sbjct: 10 TVIMRKKISIIGA-GQIGSTIALLLGQKDL---GDVYMFDIIEG------VP-QGKALDL 58
Query: 61 EDCIFPLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKAL 119
C+ + + EN +++++ I+ PRK NM RS+LL +N+ I + +
Sbjct: 59 NHCMALIGSPAKIFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENV 118
Query: 120 NSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------ 167
+ V+ + NP++ Y + + + N+
Sbjct: 119 GKYCP-NAFVICITNPLDAMVYYFKEKS------------GIPANKVCGMSGVLDSARFR 165
Query: 168 AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAI 227
L+ L S + V G H M P T+ G+L+ D + + + I
Sbjct: 166 CNLSRALGVKPSDVS-AIVVGGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQ--INEI 222
Query: 228 SRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS----DGSYNVPK 279
++ G EI+ + SA A +A+ + V + G YNV
Sbjct: 223 IKKTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSV---LVCSTYLTGQYNV-N 278
Query: 280 DIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
++ G PV I KN ++ + + + + S+E ++N + + L
Sbjct: 279 NLFVGVPVVIGKNGIEDVVI-VNLSDDEKSLFSKSVESIQNLVQDLKSL 326
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 86.4 bits (215), Expect = 2e-19
Identities = 74/341 (21%), Positives = 145/341 (42%), Gaps = 53/341 (15%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
+++++ GA G +G + +A D+ K+ + +++ + Q G +++ +
Sbjct: 1 MKVTVIGA-GNVGATVAECVARQDV-AKE----VVMVDIKDGMPQ----GKALDMRESSP 50
Query: 66 PLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVAS 124
D V N +D+++ I+ PR M R +LLA N+ I + +
Sbjct: 51 IHGFDTRVTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP 110
Query: 125 RDVKVLVVGNPVNTNTYITMKSA--PDLSYKNFTAMLR-------LDHNRAIAKLASKLN 175
D ++VV NP++ TY+ +++ P N R LD R + +A +L+
Sbjct: 111 -DSTIIVVANPLDVMTYVAYEASGFP----TN-----RVMGMAGVLDTGRFRSFIAEELD 160
Query: 176 EPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----G 231
V + + + G H +M P RY TV G+ + +I++ + I R G
Sbjct: 161 VSVRDV-QALLMGGHGDTMVPLPRYTTVGGIPVPQLIDDAR-------IEEIVERTKGAG 212
Query: 232 EEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS----DGSYNVPKDIIFGFPV 287
EI+ + G SA A AA + + I + +P DG Y + D+ G PV
Sbjct: 213 GEIVDLMGT-SAWYAPGAAAAEMTEAILKDNKRI---LPCAAYCDGEYGL-DDLFIGVPV 267
Query: 288 KI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
K+ ++I +++D + ++ S + + + + L
Sbjct: 268 KLGAGGVEEVI-EVDLDADEKAQLKTSAGHVHSNLDDLQRL 307
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 85.3 bits (212), Expect = 5e-19
Identities = 71/360 (19%), Positives = 134/360 (37%), Gaps = 70/360 (19%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIAN---GDLL------GKDQPIILQLLEASN-KKSQ 50
++++ ++++ G+ G IG + + A D++ G + L L ++ +
Sbjct: 5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTN 63
Query: 51 KAIKGVIMEIEDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNME-----RSELL 105
+++ A+ I+ + R++LL
Sbjct: 64 VSVRAEYSYEAAL------------------TGADCVIVTAGLTKVPGKPDSEWSRNDLL 105
Query: 106 AINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTYITMKSA--PDLSYKNFTAMLR--- 160
NS I E G+ + ++VV NP++ + +++ P N
Sbjct: 106 PFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDCMVKVMCEASGVP----TN-----MICG 155
Query: 161 ----LDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNS 216
LD R +A L+ ++ V G H M P RY TVNG I+ I +
Sbjct: 156 MACMLDSGRFRRYVADALSVSPRDVQ-ATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGV 214
Query: 217 FWNKNVFLPAISRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS- 271
K L I+ G EI+ G SA A +A+ + E V IP
Sbjct: 215 VTEKQ--LEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRV---IPCS 269
Query: 272 ---DGSYNVPKDIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
+G Y + KD+ G P I ++I LE+++ +K+ S++++ +++ L
Sbjct: 270 VYCNGEYGL-KDMFIGLPAVIGGAGIERVI-ELELNEEEKKQFQKSVDDVMALNKAVAAL 327
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 85.2 bits (212), Expect = 5e-19
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 36/264 (13%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTY 141
+ A++ I+ PRK M R +LL IN + + G + A + V+ + NP++ +
Sbjct: 74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP-EAFVICITNPLDAMVW 132
Query: 142 ITMKSA--PDLSYKNFTAMLR-------LDHNRAIAKLASKLNEPVSSIKKVFVWGNHSL 192
K + P + + LD R L+ + N V + VFV G H
Sbjct: 133 ALQKFSGLP----AH-----KVVGMAGVLDSARFRYFLSEEFNVSVEDVT-VFVLGGHGD 182
Query: 193 SMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----GEEIISIRGASSAASAAS 248
SM P RY+TV G+ + D++ W L I +R G EI+ + SA A +
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMG--WTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPA 240
Query: 249 AAIDHIKDWIFGTENWVTMGIPS----DGSYNVPKDIIFGFPVKI-KNSKYKIIQNLEID 303
A+ + + + V +P G Y V KD+ G P I N +II +++D
Sbjct: 241 ASAIQMAESYLKDKKRV---LPVAAQLSGQYGV-KDMYVGVPTVIGANGVERII-EIDLD 295
Query: 304 KFSRKKINLSIEELKNEILSISHL 327
K + + + S+ + + +
Sbjct: 296 KDEKAQFDKSVASVAGLCEACIGI 319
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 84.9 bits (211), Expect = 5e-19
Identities = 76/349 (21%), Positives = 141/349 (40%), Gaps = 62/349 (17%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIAN---GDLLGKDQPIILQLLEASNKKSQKAIKGVI 57
M KK ISI GA G +G +A GD++ LL+ Q G
Sbjct: 1 MRKK---ISIIGA-GFVGSTTAHWLAAKELGDIV---------LLDIVEGVPQ----GKA 43
Query: 58 MEIEDCIFPLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQG 116
+++ + DV V N ++++ ++ PRK M R +L+ +N+ I
Sbjct: 44 LDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACI 103
Query: 117 KALNSVASRDVKVLVVGNPVNTNTYITMKSA--PDLSYKNFTAMLR-------LDHNRAI 167
++ + +++V NP++ TY+ + + P K R LD R
Sbjct: 104 SQAAPLSP-NAVIIMVNNPLDAMTYLAAEVSGFP----KE-----RVIGQAGVLDAARYR 153
Query: 168 AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAI 227
+A + V ++ + G H M P R++ ++G+ + + I + L I
Sbjct: 154 TFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFSCISGIPVSEFIAPDR-------LAQI 205
Query: 228 SRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS----DGSYNVPK 279
R G EI+++ SA A +AA + + + + V +P G Y +
Sbjct: 206 VERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRV---MPVAAYLTGQYGL-N 261
Query: 280 DIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
DI FG PV + KI+ L +++ +N S + ++ + ++ L
Sbjct: 262 DIYFGVPVILGAGGVEKIL-ELPLNEEEMALLNASAKAVRATLDTLKSL 309
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 84.1 bits (209), Expect = 9e-19
Identities = 76/342 (22%), Positives = 137/342 (40%), Gaps = 52/342 (15%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
++I++ GA G +G FR+A L ++ L LL+ Q G +++ +
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQL-ARE----LVLLDVVEGIPQ----GKALDMYESGP 50
Query: 66 PLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVAS 124
L D V N +++I I+ PRK M R +LL N+ I E + +
Sbjct: 51 VGLFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK 110
Query: 125 RDVKVLVVGNPVNTNTYITMKSA--PDLSYKNFTAMLR-------LDHNRAIAKLASKLN 175
+ ++VV NP++ T++ + P K R LD R + +A +L
Sbjct: 111 -NPIIIVVSNPLDIMTHVAWVRSGLP----KE-----RVIGMAGVLDAARFRSFIAMELG 160
Query: 176 EPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----G 231
+ I V G H +M P +Y TV G+ I D++ + + + R G
Sbjct: 161 VSMQDIN-ACVLGGHGDAMVPVVKYTTVAGIPISDLLPAET-------IDKLVERTRNGG 212
Query: 232 EEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS----DGSYNVPKDIIFGFPV 287
EI+ SA A ++++ + + I V +P +G Y + G PV
Sbjct: 213 AEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRV---LPCAVGLEGQYGI-DKTFVGVPV 268
Query: 288 KI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHLI 328
K+ +N +I + +D+ + S + + + I
Sbjct: 269 KLGRNGVEQIY-EINLDQADLDLLQKSAKIVDENCKMLESTI 309
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 83.4 bits (207), Expect = 2e-18
Identities = 70/330 (21%), Positives = 123/330 (37%), Gaps = 43/330 (13%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
++++ GA+G IG + + N L+ + L L + ++ GV ++
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSR-----LTLYDIAH------TPGVAADLSHIETR 50
Query: 67 LLVDVSVHENPI-TAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASR 125
V + + K ++ ++ PRK M R +L N++I A
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP- 109
Query: 126 DVKVLVVGNPVNTNTYIT---MKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIK 182
D + ++ NPVN+ IT K + + LD RA A +A + +
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARV- 168
Query: 183 KVFVWGNHS-LSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----GEEII-S 236
V V G H+ ++ P T +D ++ ++ R G E++ +
Sbjct: 169 SVPVIGGHAGKTIIPLISQCTPKVDFPQDQLS------------TLTGRIQEAGTEVVKA 216
Query: 237 IRGASSA----ASAASAAIDHIKDWIFGTENWVTMGIPSDGSYNVPKDIIFGFPVKI-KN 291
GA SA A A + + + D + G E V + P F P+ + K
Sbjct: 217 KAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCP---YFSTPLLLGKK 273
Query: 292 SKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
K + +I F K I +I ELK I
Sbjct: 274 GIEKNLGIGKISPFEEKMIAEAIPELKASI 303
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 82.9 bits (206), Expect = 3e-18
Identities = 68/346 (19%), Positives = 123/346 (35%), Gaps = 55/346 (15%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIAN---GDLLGKDQPIILQLLEASNKKSQKAIKGVI 57
M+++ +I++ G+ GQIG NI + + D++ L + + Q G
Sbjct: 1 MIERR-KIAVIGS-GQIGGNIAYIVGKDNLADVV---------LFDIAEGIPQ----GKA 45
Query: 58 MEIEDCIFPLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQG 116
++I + V + +++ I+ S P + +RSELL N+ I
Sbjct: 46 LDITHSMVMFGSTSKVIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVA 105
Query: 117 KALNSVASRDVKVLVVGNPVNTNTYITMKSA--PDLSYKNFTAMLR-------LDHNRAI 167
+ + + V+ + NP++ K + P N + LD +R
Sbjct: 106 EGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLP----HN-----KVCGMAGVLDSSRFR 155
Query: 168 AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAI 227
+A S + V G H M P +V GV + I + + I
Sbjct: 156 TFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQ--IDEI 212
Query: 228 SRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS----DGSYNVPK 279
+E+ +A A +AA + + + V +P Y V K
Sbjct: 213 VCHTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAV---VPCSAFCSNHYGV-K 268
Query: 280 DIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSI 324
I G P I KN I+ L++ +K + SI E+ +
Sbjct: 269 GIYMGVPTIIGKNGVEDIL-ELDLTPLEQKLLGESINEVNTISKVL 313
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 82.6 bits (205), Expect = 3e-18
Identities = 62/333 (18%), Positives = 127/333 (38%), Gaps = 47/333 (14%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
+++++ GAAG IG + + G + L L + + GV +++
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAP-----VTPGVAVDLSHIPT 51
Query: 66 PLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASR 125
+ + E+ A + A++ ++ RK M+RS+L +N+ I + +
Sbjct: 52 AVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP- 110
Query: 126 DVKVLVVGNPVNTNTYI---TMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIK 182
+ ++ NPVNT I +K A + LD R+ +A + +
Sbjct: 111 KACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV- 169
Query: 183 KVFVWGNHS-LSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----GEEIISI 237
+V V G HS +++ P + V GV + + +++R G E++
Sbjct: 170 EVPVIGGHSGVTILP--LLSQVPGVSFTEQE-----------VADLTKRIQNAGTEVVEA 216
Query: 238 R-GASSA----ASAASAAIDHIKDWIFGTENWVTMGIPSDGSY---NVPKDIIFGFPVKI 289
+ G SA AA+ + + G + V + +Y + F P+ +
Sbjct: 217 KAGGGSATLSMGQAAARFGLSLVRALQGEQGVV------ECAYVEGDGQYARFFSQPLLL 270
Query: 290 -KNSKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
KN + + F + + ++ LK +I
Sbjct: 271 GKNGVEERKSIGTLSAFEQNALEGMLDTLKKDI 303
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 82.6 bits (205), Expect = 4e-18
Identities = 52/269 (19%), Positives = 103/269 (38%), Gaps = 48/269 (17%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTY 141
+ ++I ++ RK M R +LL N++ + + + + A D V++ NPV+ TY
Sbjct: 66 RGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAK-DAIVVITTNPVDAMTY 124
Query: 142 ITMKSAPDLSYKNFTAMLRLDHNRAI------------AKLASKLNEPVSSIKKVFVWGN 189
+ K R I ++ KL S+ V G
Sbjct: 125 VMYKKT------------GFPRERVIGFSGILDSARMAYYISQKLGVSFKSV-NAIVLGM 171
Query: 190 HSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----GEEIISIRGASSAAS 245
H M+P R ++V GV + +++ + + G +I +RG S+
Sbjct: 172 HGQKMFPVPRLSSVGGVPLEHLMSKEE-------IEEVVSETVNAGAKITELRG-YSSNY 223
Query: 246 AASAAIDHIKDWIFGTENWVTMGIPS----DGSYNVPKDIIFGFPVKI-KNSKYKIIQNL 300
+A + + I + P G Y DI+ P I K+ +II L
Sbjct: 224 GPAAGLVLTVEAIKRDSKRI---YPYSLYLQGEYGY-NDIVAEVPAVIGKSGIERII-EL 278
Query: 301 EIDKFSRKKINLSIEELKNEILSISHLIR 329
+ + ++K + +++ +K + ++ +R
Sbjct: 279 PLTEDEKRKFDEAVQAVKKLVETLPPQLR 307
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 81.0 bits (201), Expect = 1e-17
Identities = 71/356 (19%), Positives = 126/356 (35%), Gaps = 68/356 (19%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIAN---GDLLGKDQPIILQLLEASNKKSQKAIKGVI 57
M K +I + G+ G IG + I GD++ L + G
Sbjct: 1 MAPKA-KIVLVGS-GMIGGVMATLIVQKNLGDVV---------LFDIVKNMPH----GKA 45
Query: 58 MEIEDCIFPLLVDVSVH-ENPITAFKDANIAILIGSFPRKSNM-----ERSELLAINSSI 111
++ + V N A++ I+ F + R +LL +N+ I
Sbjct: 46 LDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKI 105
Query: 112 FIEQGKALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI---- 167
IE G + + ++VV NPV+ + + + + N+ I
Sbjct: 106 MIEIGGHIKK-NCPNAFIIVVTNPVDVMVQLLHQHS------------GVPKNKIIGLGG 152
Query: 168 --------AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWN 219
++ KLN + + G H M RY TV G+ +++ INN
Sbjct: 153 VLDTSRLKYYISQKLNVCPRDVN-AHIVGAHGNKMVLLKRYITVGGIPLQEFINNK--LI 209
Query: 220 KNVFLPAISRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPS---- 271
+ L AI R EI+++ + A AA+ + + V +
Sbjct: 210 SDAELEAIFDRTVNTALEIVNLHASPYVAPAAAII--EMAESYLKDLKKV---LICSTLL 264
Query: 272 DGSYNVPKDIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISH 326
+G Y DI G PV + N ++I+ L+++ + K + +I E K H
Sbjct: 265 EGQYGH-SDIFGGTPVVLGANGVEQVIE-LQLNSEEKAKFDEAIAETKRMKALAHH 318
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 78.7 bits (195), Expect = 6e-17
Identities = 54/340 (15%), Positives = 116/340 (34%), Gaps = 59/340 (17%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
++S+ GAAG +G + IA D+ D+ + + + + + G + I
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIA--DEVVFVDIPDKEDD-----TVGQAADTNHGI-A 53
Query: 67 LLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSVA 123
+ V + +++ ++ PR+ R +L N+ I
Sbjct: 54 YDSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDE----H 109
Query: 124 SRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------AKLA 171
+ D L NPV+ + + I L+
Sbjct: 110 NDDYISLTTSNPVDLLNRHLYE----AG--------DRSREQVIGFGGRLDSARFRYVLS 157
Query: 172 SKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR- 230
+ + PV ++ + + G H + P + +V+G + +
Sbjct: 158 EEFDAPVQNV-EGTILGEHGDAQVPVFSKVSVDGTDPEFSGDE---------KEQLLGDL 207
Query: 231 ---GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGFP 286
++I +GA+ A A H+ + I V + +G + +D FG P
Sbjct: 208 QESAMDVIERKGATEWGPARGVA--HMVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVP 264
Query: 287 VKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSIS 325
V + N +I+ ++D + + + + E+L ++ IS
Sbjct: 265 VSLGSNGVEEIV-EWDLDDYEQDLMADAAEKLSDQYDKIS 303
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 76.4 bits (189), Expect = 5e-16
Identities = 68/348 (19%), Positives = 131/348 (37%), Gaps = 53/348 (15%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M+K +++I GA G +G + F +A + L L++ +K+ G M+I
Sbjct: 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTANE-----LVLIDVFKEKA----IGEAMDI 52
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGK 117
+ P + +S++ + KD ++ ++ RK R +L N I +
Sbjct: 53 NHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIM 111
Query: 118 ALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI---------- 167
+LVV NPV+ TY+ K S L + I
Sbjct: 112 K----YYNHGVILVVSNPVDIITYMIQK----WS--------GLPVGKVIGSGTVLDSIR 155
Query: 168 --AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLP 225
L+ KL V ++ ++ G H S P + + G I + I++
Sbjct: 156 FRYLLSEKLGVDVKNVH-GYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKK 214
Query: 226 AISRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKD 280
I+ G II +GA+ A S I + + +N + T+G +G Y + +D
Sbjct: 215 KIAEDVKTAGATIIKNKGATYYGIAVSIN--TIVETLLKNQNTIRTVGTVINGMYGI-ED 271
Query: 281 IIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
+ P + +++ + + + S E++K + + +L
Sbjct: 272 VAISLPSIVNSEGVQEVL-QFNLTPEEEEALRFSAEQVKKVLNEVKNL 318
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 76.4 bits (189), Expect = 5e-16
Identities = 69/341 (20%), Positives = 133/341 (39%), Gaps = 54/341 (15%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
++I I G G++G + F + + +++ + + +A +G +++
Sbjct: 1 MKIGIVGL-GRVGSSTAFALLMKGFA--REMVLIDVDKK------RA-EGDALDLIHGT- 49
Query: 66 PLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSV 122
P +++ K +++ I+ P+K R +LL N+ +
Sbjct: 50 PFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSK---- 105
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------AKL 170
+ D V+VV NPV+ TY +K S +D + +
Sbjct: 106 YAPDSIVIVVTNPVDVLTYFFLK----ES--------GMDPRKVFGSGTVLDTARLRTLI 153
Query: 171 ASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR 230
A S+ V+V G H S P + A + G+ +++M + + L + +
Sbjct: 154 AQHCGFSPRSVH-VYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKI-LENFAEK 211
Query: 231 ----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGF 285
EII +GA+ A A + A I + IF E V T+ + + V KD+
Sbjct: 212 TKRAAYEIIERKGATHYAIALAVA--DIVESIFFDEKRVLTLSVYLEDYLGV-KDLCISV 268
Query: 286 PVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSIS 325
PV + K+ +I+ L +++ + S LKN I I+
Sbjct: 269 PVTLGKHGVERIL-ELNLNEEELEAFRKSASILKNAINEIT 308
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 76.4 bits (189), Expect = 6e-16
Identities = 47/264 (17%), Positives = 90/264 (34%), Gaps = 41/264 (15%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSVASRDVKVLVVGNPVNT 138
++ + I+ ++ R L+ N +IF I S K+L+V NPV+
Sbjct: 86 ANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVK----YSPQCKLLIVSNPVDI 141
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAI------------AKLASKLNEPVSSIKKVFV 186
TY+ K +S NR I + +L S +V
Sbjct: 142 LTYVAWK----IS--------GFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSC-HGWV 188
Query: 187 WGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----GEEIISIRGASS 242
G H S P + V GV ++ + + ++ E+I ++G +S
Sbjct: 189 LGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTS 248
Query: 243 AASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGFPVKI-KNSKYKIIQNL 300
A S A + + I V + G Y + +D+ P + +N ++ +
Sbjct: 249 WAIGLSVA--DLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVV-KV 305
Query: 301 EIDKFSRKKINLSIEELKNEILSI 324
+ ++ S + L +
Sbjct: 306 TLTPDEEARLKKSADTLWGIQKEL 329
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 75.7 bits (187), Expect = 8e-16
Identities = 64/337 (18%), Positives = 123/337 (36%), Gaps = 49/337 (14%)
Query: 3 KKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIED 62
+++I GAAG IG + + L+ + ++ A GV +I
Sbjct: 6 APGFKVAILGAAGGIGQPLAMLMKMNPLV--SVLHLYDVVNA---------PGVTADISH 54
Query: 63 CIFPLLVDVSVHENPIT-AFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNS 121
+V + + + A ++ I+ PRK M R +L IN+ I + +
Sbjct: 55 MDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK 114
Query: 122 VASRDVKVLVVGNPVNTNTYIT---MKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPV 178
V ++ NPVN+ I K A K + LD RA +A L
Sbjct: 115 CCP-RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP 173
Query: 179 SSIKKVFVWGNHS-LSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----GEE 233
+ V V G H+ +++ P ++ I+ ++ R G E
Sbjct: 174 RDVD-VPVVGGHAGVTILPLLSQVKPPSSFTQEEIS------------YLTDRIQNGGTE 220
Query: 234 IISIR-GASSA--ASAASAA--IDHIKDWIFGTENWVTMGIPSDGSY---NVPKDIIFGF 285
++ + GA SA + A +A D + G + + ++ V + F
Sbjct: 221 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVI------ECAFVSSQVTELPFFAS 274
Query: 286 PVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
V++ +N ++ ++++ R + + +EL I
Sbjct: 275 KVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSI 311
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 74.9 bits (185), Expect = 2e-15
Identities = 67/342 (19%), Positives = 131/342 (38%), Gaps = 54/342 (15%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
K ++ + G G +G + + + + + I+ + + K KG +++
Sbjct: 5 TDKDHQKVILVGD-GAVGSSYAYAMVLQGIA--QEIGIVDIFKD------KT-KGDAIDL 54
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGK 117
+ + P ++ + KDA++ ++ P+K R +L+ N I ++
Sbjct: 55 SNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIV 113
Query: 118 ALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI---------- 167
+ + LV NPV+ TY T K LS NR +
Sbjct: 114 D----SGFNGIFLVAANPVDILTYATWK----LS--------GFPKNRVVGSGTSLDTAR 157
Query: 168 --AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLP 225
+A +N S+ ++ G H + +P + +A + GV I + + + ++ L
Sbjct: 158 FRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDK-LV 215
Query: 226 AISRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKD 280
+ EII ++GA+ A + A I I EN V + + DG Y + D
Sbjct: 216 KMFEDVRDAAYEIIKLKGATFYGIATALA--RISKAILNDENAVLPLSVYMDGQYGL-ND 272
Query: 281 IIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
I G P I +N I+ + + + + S +LK +
Sbjct: 273 IYIGTPAVINRNGIQNIL-EIPLTDHEEESMQKSASQLKKVL 313
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 74.5 bits (184), Expect = 2e-15
Identities = 75/342 (21%), Positives = 127/342 (37%), Gaps = 53/342 (15%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M K ++++ GA G +G + F + N + D+ +++ + + KA G +M++
Sbjct: 1 MNKHVNKVALIGA-GFVGSSYAFALINQGIT--DELVVIDVNKE------KA-MGDVMDL 50
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGK 117
V KDA+I + +K R EL+ N IF + +
Sbjct: 51 NHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVM 110
Query: 118 ALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI---------- 167
A + D LV NPV+ TY T K S L R I
Sbjct: 111 A----SGFDGIFLVATNPVDILTYATWK----FS--------GLPKERVIGSGTTLDSAR 154
Query: 168 --AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLP 225
L+ ++ + G H + P + +A V GV + +++ N + + L
Sbjct: 155 FRFMLSEYFGAAPQNV-CAHIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEE-LD 212
Query: 226 AISRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKD 280
I II +GA+ A S A I I EN + T+ DG Y D
Sbjct: 213 QIVDDVKNAAYHIIEKKGATYYGVAMSLA--RITKAILHNENSILTVSTYLDGQYGA-DD 269
Query: 281 IIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
+ G P + + I L +++ +++ S LKN +
Sbjct: 270 VYIGVPAVVNRGGIAGIT-ELNLNEKEKEQFLHSAGVLKNIL 310
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 74.5 bits (184), Expect = 3e-15
Identities = 58/340 (17%), Positives = 107/340 (31%), Gaps = 53/340 (15%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
+++ I G+ G +G + +A + + + L++ K + + +I
Sbjct: 1 MKVGIVGS-GMVGSATAYALALLGVARE-----VVLVDLDRKLA----QAHAEDILHAT- 49
Query: 66 PLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSV 122
P V V + A +L ++ R +LL N+ +F + +
Sbjct: 50 PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLE---- 105
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------AKL 170
A+ + +LV NPV+ T + + L R + A L
Sbjct: 106 AAPEAVLLVATNPVDVMTQVAYA------------LSGLPPGRVVGSGTILDTARFRALL 153
Query: 171 ASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR 230
A L S+ +V G H S + A V GV + + I
Sbjct: 154 AEYLRVAPQSV-HAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEG 212
Query: 231 ----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGF 285
II +GA+ A A + I E V T+ + V ++
Sbjct: 213 VRRAAYRIIEGKGATYYGIGAGLA--RLVRAILTDEKGVYTVSAFTPEVAGV-LEVSLSL 269
Query: 286 PVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSI 324
P + + + R + S E LK ++
Sbjct: 270 PRILGAGGVAGTV-YPSLSPEERAALRRSAEILKEAAFAL 308
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 71.4 bits (176), Expect = 3e-14
Identities = 69/342 (20%), Positives = 126/342 (36%), Gaps = 53/342 (15%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
R+ + GA G +G + +F + N + D+ +++ E+ KA G M+
Sbjct: 2 KNNGGARVVVIGA-GFVGASYVFALMNQGIA--DEIVLIDANES------KA-IGDAMDF 51
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGK 117
V + +DA++ ++ +K R +L+ N +IF +E
Sbjct: 52 NHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVM 111
Query: 118 ALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI---------- 167
A + LV NPV+ TY T K L H R I
Sbjct: 112 A----SGFQGLFLVATNPVDILTYATWK------------FSGLPHERVIGSGTILDTAR 155
Query: 168 --AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLP 225
L + ++ ++ G H + P + A + + IR ++ + L
Sbjct: 156 FRFLLGEYFSVAPQNV-HAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKG-EEAQKDLE 213
Query: 226 AISRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKD 280
I +II +GA+ A A + I EN + T+ DG Y +D
Sbjct: 214 RIFVNVRDAAYQIIEKKGATYYGIAMGLA--RVTRAILHNENAILTVSAYLDGLYGE-RD 270
Query: 281 IIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
+ G P I +N ++I +E++ + + + S LK+ +
Sbjct: 271 VYIGVPAVINRNGIREVI-EIELNDDEKNRFHHSAATLKSVL 311
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 71.4 bits (176), Expect = 3e-14
Identities = 67/346 (19%), Positives = 129/346 (37%), Gaps = 54/346 (15%)
Query: 3 KKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIED 62
K ++ + G G +G + F + N ++ D+ +I+ L K +G +M+++
Sbjct: 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIV--DELVIIDLDTE------KV-RGDVMDLKH 53
Query: 63 CIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKAL 119
V V + DA++ ++ +K R +L++ N IF + + A
Sbjct: 54 ATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMA- 112
Query: 120 NSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------ 167
+ D LV NPV+ Y T K L R I
Sbjct: 113 ---SKFDGIFLVATNPVDILAYATWK------------FSGLPKERVIGSGTILDSARFR 157
Query: 168 AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAI 227
L+ + S+ + G H + P + +A + G ++ ++ + I
Sbjct: 158 LLLSEAFDVAPRSV-DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQ--IEQI 214
Query: 228 SRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDII 282
+ +II +GA+ A A I + IF E+ V T+ +G Y +D+
Sbjct: 215 FVQTRDAAYDIIQAKGATYYGVAMGLA--RITEAIFRNEDAVLTVSALLEGEYEE-EDVY 271
Query: 283 FGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
G P I +N ++ + ++ + K S + LK+ + L
Sbjct: 272 IGVPAVINRNGIRNVV-EIPLNDEEQSKFAHSAKTLKDIMAEAEEL 316
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 69.8 bits (172), Expect = 8e-14
Identities = 52/330 (15%), Positives = 121/330 (36%), Gaps = 55/330 (16%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
+++ GA G++G F + + + L++ + + G M++
Sbjct: 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE-----IALVDIAEDLAV----GEAMDLAHAAA 50
Query: 66 PLLVDVSV-HENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNS 121
+ + + K + I ++ RK M R +L N+ I ++
Sbjct: 51 GIDKYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVE--- 107
Query: 122 VASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI--------AKLASK 173
+ + K+LVV NP++ TYI K + N +L +
Sbjct: 108 -NAPESKILVVTNPMDVMTYIMWKES------------GKPRNEVFGMGNQLDSQRLKER 154
Query: 174 L-NEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRRGE 232
L N +I++ ++ G H SM+ A +G + + + N+ +
Sbjct: 155 LYNAGARNIRRAWIIGEHGDSMFVAKSLADFDGEVDWEAVEND-----------VRFVAA 203
Query: 233 EIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGFPVKIKN 291
E+I +GA+ A + + + + + G Y + +++ G P K+
Sbjct: 204 EVIKRKGATIFGPAVAIY--RMVKAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGK 260
Query: 292 SKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
+ ++ ++++ +K+ S + L+ +
Sbjct: 261 NGAEVA-DIKLSDEEIEKLRNSAKILRERL 289
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 69.1 bits (170), Expect = 2e-13
Identities = 69/340 (20%), Positives = 124/340 (36%), Gaps = 55/340 (16%)
Query: 3 KKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIED 62
++ + G G +G + F +A + ++ +I+ +++ + KG +++ED
Sbjct: 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIA--EEFVIVDVVKD------RT-KGDALDLED 52
Query: 63 CIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKAL 119
++ + KDA++ ++ P+K R +L+ N +I ++
Sbjct: 53 AQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD- 110
Query: 120 NSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------ 167
+ D LV NPV+ TY T K S R I
Sbjct: 111 ---SGFDGIFLVAANPVDILTYATWK----FS--------GFPKERVIGSGTSLDSSRLR 155
Query: 168 AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAI 227
L + N S+ ++ G H S + Y AT+ +RD+ + L +
Sbjct: 156 VALGKQFNVDPRSV-DAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ--GVSDDDLAKL 212
Query: 228 SRR----GEEIISIRGASSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDII 282
+II+++GA+ + I I EN V +G DG Y + DI
Sbjct: 213 EDGVRNKAYDIINLKGATFYGIGTALM--RISKAILRDENAVLPVGAYMDGQYGL-NDIY 269
Query: 283 FGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEI 321
G P I +II + KK+ S LK +
Sbjct: 270 IGTPAIIGGTGLKQII-ESPLSADELKKMQDSAATLKKVL 308
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 68.3 bits (168), Expect = 2e-13
Identities = 49/259 (18%), Positives = 85/259 (32%), Gaps = 39/259 (15%)
Query: 6 VRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIF 65
+++ + G G +G F + + L L++ ++ + +I
Sbjct: 1 MKVGVVGT-GFVGSTAAFALVLRGSCSE-----LVLVDRDEDRA----QAEAEDIAHAA- 49
Query: 66 PLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSV 122
P+ V + DA + IL +K R +LL N+ IF + Q
Sbjct: 50 PVSHGTRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITR---- 105
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLR-------LDHNRAIAKLASKLN 175
A+ D +LV NPV+ T + + AP LD R +A
Sbjct: 106 AAPDAVLLVTSNPVDLLTDLATQLAP----GQ-----PVIGSGTVLDSARFRHLMAQHAG 156
Query: 176 EPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR----G 231
+ +V G H S + A V G+ + D + + I
Sbjct: 157 VDGTHA-HGYVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAA 215
Query: 232 EEIISIRGASSAASAASAA 250
II + A+ A+ A
Sbjct: 216 ASIIEGKRATYYGIGAALA 234
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 67.2 bits (165), Expect = 7e-13
Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 43/265 (16%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIF---IEQGKALNSVASRDVKVLVVGNPVNT 138
+DA++ ++ +K R EL+ +I + + + +++ NPV+
Sbjct: 74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVK----VAPNAIYMLITNPVDI 129
Query: 139 NTYITMKSAPDLSYKNFTAMLRLDHNRAI------------AKLASKLNEPVSSIKKVFV 186
T++ K L+ L N+ +A + V ++ ++
Sbjct: 130 ATHVAQK----LT--------GLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNV-HAYI 176
Query: 187 WGNHSLSMYPDYRYATVNGVLIRDMI-NNNSFWNKNVFLPAISRR----GEEIISIRGAS 241
G H S P + AT+ GV + D I + +II+ +GA+
Sbjct: 177 AGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGAT 236
Query: 242 SAASAASAAIDHIKDWIFGTENWV-TMGIPSDGSYNVPKDIIFGFPVKI-KNSKYKIIQN 299
+ A S I + + N + + + + DI P + + I N
Sbjct: 237 NYAIGMSGV--DIIEAVLHDTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTI-N 292
Query: 300 LEIDKFSRKKINLSIEELKNEILSI 324
+ + S E LK
Sbjct: 293 TPVSDKELAALKRSAETLKETAAQF 317
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 59.6 bits (145), Expect = 3e-10
Identities = 45/352 (12%), Positives = 102/352 (28%), Gaps = 72/352 (20%)
Query: 3 KKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIED 62
+ +I++ G +G + DL D+ ++ ++E K KG +M++E
Sbjct: 19 RSYNKITVVGC-DAVGMADAISVLMKDLA--DEVALVDVMED------KL-KGEMMDLEH 68
Query: 63 CIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSV 122
L V + + + ++ ++ R L+ N +IF +
Sbjct: 69 GSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH 128
Query: 123 ASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAI------------AKL 170
S D + K + L +R I +
Sbjct: 129 -SPDCLKELHPELGTDKNKQDWKLS------------GLPMHRIIGSGCNLDSARFRYLM 175
Query: 171 ASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRR 230
+L + +V G H S+ + + K+V A
Sbjct: 176 GERLGVHSCLV-IGWVIGQHGDSVPSVWSGMWDAKLH------------KDVVDSA---- 218
Query: 231 GEEIISIRGA---------------SSAASAASAAIDHIKDWIFGTENWV-TMGIPSDGS 274
E+I ++G + + ++ + I V +
Sbjct: 219 -YEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDF 277
Query: 275 YNVPKDIIFGFPVKIKN--SKYKIIQNLEIDKFSRKKINLSIEELKNEILSI 324
Y + ++ P + N S I+ +++ +++ S L + +
Sbjct: 278 YGIKDNVFLSLPCVLNNGISHCNIV-KMKLKPDEEQQLQKSATTLWDIQKDL 328
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 3e-10
Identities = 32/236 (13%), Positives = 80/236 (33%), Gaps = 70/236 (29%)
Query: 122 VASRDVK-VLVVGNPVNTNTYI--TMKSAPDLSYKNFT-AMLRLDHNRAIAKLASKLNEP 177
++ ++ +++ + V+ + T+ S + + F +LR+++ ++ + ++ +P
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 178 VSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINNNSFWNKN-VFLPAISRRGEEIIS 236
S + + MY + R + +N N VF R + +
Sbjct: 106 -SMMTR----------MYIEQR---------------DRLYNDNQVFAKYNVSRLQPYLK 139
Query: 237 IR--------------------GASS-AASAASAA--IDHIKDWIFGTENWVTMGIPSDG 273
+R G + A + + IF W+ +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----WLNLK----- 190
Query: 274 SYNVPKDIIFGFPVKIKNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHLIR 329
+ N P+ ++ ++ Y+I N I L I ++ E + L++
Sbjct: 191 NCNSPETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLK 239
Score = 38.3 bits (88), Expect = 0.004
Identities = 28/215 (13%), Positives = 72/215 (33%), Gaps = 54/215 (25%)
Query: 117 KALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNE 176
K L + +R +V + T T+I++ T + + L L+
Sbjct: 267 KIL--LTTRFKQVTDFLSAATT-THISLDHHS----MTLT------PDEVKSLLLKYLDC 313
Query: 177 PVSSIKKVFVWGN-HSLSMYPDYRYATVNGVLIRDMINNNSFWNKNVFLPAISRRGEEII 235
+ + + N LS+ IRD + W K+V ++ II
Sbjct: 314 RPQDLPREVLTTNPRRLSII---------AESIRDGLATWDNW-KHVNCDKLTT----II 359
Query: 236 SIRGASSAASAASAAIDHIKDWIFGTENWVTMGI-PSDGSYNVPKDIIFGFPVKI--KNS 292
++++ ++ + + + + + P ++P ++ + +
Sbjct: 360 ------------ESSLNVLEPAEY-RKMFDRLSVFPPS--AHIPTILL-----SLIWFDV 399
Query: 293 KYKIIQNLEIDKFSRKKINLSIEELKNEILSISHL 327
+ + ++K + L ++ K +SI +
Sbjct: 400 IKSDVMVV-VNKLHKYS--LVEKQPKESTISIPSI 431
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 54.5 bits (132), Expect = 1e-08
Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 32/239 (13%)
Query: 82 KDANIAILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTY 141
+ + I S+ +++ N +F AL S+ +LV PV TY
Sbjct: 76 AHSKVVI-FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTY 133
Query: 142 ITMKSAPDLSYKNFTAMLRLDHNRAIAKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYA 201
+T K + + + LD R + + L S +V+V G +
Sbjct: 134 VTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGK-EVWVIGEQGEDKVLTWSGQ 192
Query: 202 TVNGVLIRDMINNNSFWNKNVFLPAISRRGEEIISIRGASSAASAASAAIDHIKDWIFGT 261
+ +S R E++ ++G S + S A + D I
Sbjct: 193 EEVV--------------SHTSQVQLSNRAMELLRVKGQRSWSVGLSVA--DMVDSIVNN 236
Query: 262 ENWV-TMGIPSDGSYNVPKDIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELK 318
+ V ++ + G Y++ ++ P + N ++I K L + +
Sbjct: 237 KKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVI-----------KTTLKEDTVT 284
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 52.1 bits (126), Expect = 6e-08
Identities = 41/295 (13%), Positives = 92/295 (31%), Gaps = 45/295 (15%)
Query: 54 KGVIMEIEDCIFPLLVDVSVHENPITAFKDANIAIL----IGSFPRKSNMERSELLAINS 109
K ++ +D + L ++ N A DA++ I I +R L S
Sbjct: 40 KADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTS 99
Query: 110 SIF---IEQGKALNSVASRDVKVLVVGNPVNTNTYITMKSAPDLSYKNFTAMLRLDHNRA 166
S+ K + ++V+ NPV+ T + + ++
Sbjct: 100 SMVQSVGTNLKE----SGFHGVLVVISNPVDVITALFQH------------VTGFPAHKV 143
Query: 167 I------------AKLASKLNEPVSSIKKVFVWGNHSLSMYPDYRYATVNGVLIRDMINN 214
I + + S+ + G H S + + V G I + +
Sbjct: 144 IGTGTLLDTARMQRAVGEAFDLDPRSVS-GYNLGEHGNSQFVAWSTVRVMGQPIVTLADA 202
Query: 215 NSFWNKNVFLPAISRRGEEIISIRGASSAASAASAAIDHIKDWIFGTENWVTMGIPSDGS 274
+ A + G +++ +G +S A SA I + + +
Sbjct: 203 GDIDLAAIEEEAR-KGGFTVLNGKGYTSYGVATSAI--RIAKAVMADAHAE---LVVSNR 256
Query: 275 YNVPKDIIFGFPVKI-KNSKYKIIQNLEIDKFSRKKINLSIEELKNEILSISHLI 328
+ + +P I ++ L++ ++K+ S + ++ I +
Sbjct: 257 RDD-MGMYLSYPAIIGRDGVLAETT-LDLTTDEQEKLLQSRDYIQQRFDEIVDTL 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 5e-07
Identities = 61/341 (17%), Positives = 113/341 (33%), Gaps = 126/341 (36%)
Query: 32 GKDQPIILQLLEASNKKSQKAIKGVIMEIEDCI-----FPLLVDVSVHENPITAFKDANI 86
G D L + S KA + V ++ F +L D+ V NP+ +
Sbjct: 1632 GMD------LYKTS-----KAAQDVWNRADNHFKDTYGFSIL-DI-VINNPVN------L 1672
Query: 87 AILIGSFPRKSNMERSELLAINSSIFIEQGKALNSVASRDVKVLVVGNPVNTNTYITMKS 146
I G E+ + + N S I + + + + +N ++
Sbjct: 1673 TIHFGG-------EKGKRIRENYSAMIFETIVDGKLKTEKIF-----KEINEHSTSYTFR 1720
Query: 147 APD--LSYKNFT--AMLRLDHNRAIAK-LASKLNEPVSSIKKVFVWGNHSL--SMYPDYR 199
+ LS FT A+ + +A + L SK P + F G HSL
Sbjct: 1721 SEKGLLSATQFTQPALTLM--EKAAFEDLKSKGLIPADA---TFA-G-HSLGE------- 1766
Query: 200 Y---ATVNGVL-IRDMINNNSFWNKNVFLPAISRRGE----------------EIISIRG 239
Y A++ V+ I ++ + VF RG +I+I
Sbjct: 1767 YAALASLADVMSIESLV-------EVVFY-----RGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 240 ASSAASAASAAIDHIKDWIFGTENWVTMGIPSDGS---YNVPKDIIFGFPVKIKNSKYKI 296
AAS + A+ ++ + + W+ YNV N +Y
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLV-------EIVNYNVE------------NQQYVA 1855
Query: 297 ---IQNLE-----IDKFSRKKINL-------SIEELKNEIL 322
++ L+ ++ +KI++ S+EE++ +
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 36.6 bits (84), Expect = 0.014
Identities = 42/266 (15%), Positives = 75/266 (28%), Gaps = 114/266 (42%)
Query: 1 MLKKPVRISI--TGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIM 58
++ PV ++I G G+ RI +I + + K++K K +
Sbjct: 1665 VINNPVNLTIHFGGEKGK-------RIRENYS-----AMIFETIVDGKLKTEKIFKEINE 1712
Query: 59 EIEDCIFPLLVDVSVHENP-----ITAFKDANIAILI------------GSFPRKSNM-- 99
F + T F A+ + G P +
Sbjct: 1713 HSTSYTF---------RSEKGLLSATQF--TQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 100 ----ERSELLAINSSIFIEQ--------GKALNSVASRD--------------------- 126
E + L ++ + IE G + RD
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 127 ----VKVLV--VGN-------PVNTNT----YITMKSAPDLSYKNFTAMLRLDHNRAIAK 169
++ +V VG VN N Y+ +A DL RA+
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYV---AAGDL--------------RALDT 1864
Query: 170 LASKLNEPVSSIKKV-FVWGNHSLSM 194
+ + LN ++K+ + SLS+
Sbjct: 1865 VTNVLNF--IKLQKIDIIELQKSLSL 1888
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 30.7 bits (70), Expect = 0.68
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1 MLKKPVRISITGAAGQIGYNI 21
+ +P ITG AG IG N+
Sbjct: 23 LPAQPKVWLITGVAGFIGSNL 43
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 29.9 bits (68), Expect = 0.92
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 RISITGAAGQIGYNII 22
+I I GA GQIG +
Sbjct: 4 KILIIGACGQIGTELT 19
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 30.3 bits (69), Expect = 0.95
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPII 38
++ P ITG AG IG N++ + LL +Q +I
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEK-----LLKLNQVVI 53
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.9 bits (67), Expect = 1.3
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 7 RISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIEDCIFP 66
I ITGA G +G N+ + + D I + ++ + A+ D I
Sbjct: 2 NIVITGAKGFVGKNLKADLTS----TTDHHIFEVHRQTKEEELESALLKA-----DFIV- 51
Query: 67 LLVDVSVHENPITAFKDANI 86
L V+ E+ F N+
Sbjct: 52 HLAGVNRPEHDK-EFSLGNV 70
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 29.3 bits (66), Expect = 1.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 7 RISITGAAGQIG 18
I+I GAAG +G
Sbjct: 16 HIAIIGAAGMVG 27
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 7 RISITGAAGQIGYNIIFR-IANGD 29
++ ITG GQIG +I + GD
Sbjct: 23 KVFITGICGQIGSHIAELLLERGD 46
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 28.7 bits (65), Expect = 2.1
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M +R++I GA G++G +I + + + LE + G +
Sbjct: 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGV-----QLGAALEREGSSLLGSDAGELAGA 55
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAI 88
V+V + D ++ I
Sbjct: 56 GKT------GVTVQSSLDAVKDDFDVFI 77
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 28.8 bits (65), Expect = 2.5
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 8 ISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEIE------ 61
I +TG++GQIG ++ +A + +I + + K I + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAE---KYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAV 58
Query: 62 -----DCIFPL--LVDVSVHENPITAFKDANI 86
D IF L ++ ++P A+ N+
Sbjct: 59 EKYSIDAIFHLAGILSAKGEKDPALAY-KVNM 89
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 27.9 bits (63), Expect = 4.3
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 7 RISITGAAGQIGYNIIFR-IANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI--EDC 63
+I++TG G +G ++ +G + PIIL K+ + + + ED
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDG-----NTPIILTRS--IGNKAINDYEYRVSDYTLEDL 56
Query: 64 IFPLL-VDVSVHE 75
I L VD VH
Sbjct: 57 INQLNDVDAVVHL 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.3
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 165 RAIAKLAS--KLNEPVS----SIK 182
+A+ KL + KL S +IK
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK 43
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 28.2 bits (62), Expect = 4.3
Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 25/170 (14%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQL-LEASNKKSQKAIKGVIME 59
M KK I I G I+ L ++ I +L L ++K+ Q I G
Sbjct: 24 MKKKSFSIVIAGGGSTFTPGIVL----MLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV 79
Query: 60 IEDCIFPLLVDVSVHENPITAFKDANIAILIGSFPRKSNMERSELLAINSSIFIEQ---- 115
++ + +P AF D + + + + E + + + ++
Sbjct: 80 FIRE-KAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGP 138
Query: 116 ---GKALNSV------------ASRDVKVLVVGNPVNTNTYITMKSAPDL 150
+ S+ S D +L NP T + P+
Sbjct: 139 GGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 188
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 27.7 bits (62), Expect = 4.4
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
M K R+ +TGAAGQ+G + + L I+ + + + V ++
Sbjct: 1 MAMK--RLLVTGAAGQLGRVMR------ERLAPMAEILRLADLSPLDPAGPNEECVQCDL 52
Query: 61 ED--CIFPLL--VDVSVH------ENPITAFKDANI 86
D + ++ D VH E P NI
Sbjct: 53 ADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGNI 88
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 27.3 bits (61), Expect = 7.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 4 KPVRISITGAAGQIGYNIIFR 24
+ I ITG AG +G N+ F
Sbjct: 9 ENQTILITGGAGFVGSNLAFH 29
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 26.9 bits (60), Expect = 8.1
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 1 MLKKPVRISITGAAGQIGYNI 21
ML R+ +TGAAG +G I
Sbjct: 1 MLN---RLLVTGAAGGVGSAI 18
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 26.8 bits (60), Expect = 8.8
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 1 MLKKPVRISITGAAGQIGYNIIFRIANGDLLGKDQPIILQLLEASNKKSQKAIKGVIMEI 60
+R+++ GA G++G +I I + + +L +++
Sbjct: 17 QGPGSMRLTVVGANGRMGRELITAIQRRKDV-----ELCAVLVRKGSSFVDKDASILIGS 71
Query: 61 EDCIFPLLVDVSVHENPITAFKDANIAI 88
+ V + ++P +AF + +
Sbjct: 72 DFL------GVRITDDPESAFSNTEGIL 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.381
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,948,458
Number of extensions: 296894
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 75
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)