RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9583
(866 letters)
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 740 bits (1913), Expect = 0.0
Identities = 270/479 (56%), Positives = 350/479 (73%), Gaps = 5/479 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+K FDV+VIGAGPGGYVA+IR AQLG K ACI+ WK+ + ALGGTC NVGCIPSKAL
Sbjct: 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +S FEN + F ++GI+ V +++ KM+ RK+ ++KK GI LFKKNKI G
Sbjct: 61 LASSEEFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F GK + +EI++ + + ITAK++IIATGS+ R PGV FD +IL N GAL
Sbjct: 121 RGSFVGK-TDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNF 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IGAGVIGLE+GS+WRRLG+EVTILE FL DE++AK+A KQGL
Sbjct: 180 TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+I L KI +IK + V + Y++ +T DKL+++IGR+PNT+ L ++ +G
Sbjct: 240 DIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLE----VDKLIVSIGRVPNTDGLGLEAVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E FI V+D+C TN+PN+YAIGDVVRGPMLAHKAEEEG+ VAE I+GQK I++N
Sbjct: 296 LKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK + Y G FPF+AN RA +GE G VKI++D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
EILG+H+IGP ASELIAEAV+A+EF+ASSEDIARICH HP+LSE EAA++++ R ++
Sbjct: 416 EILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRPLH 474
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 566 bits (1460), Expect = 0.0
Identities = 202/394 (51%), Positives = 273/394 (69%), Gaps = 17/394 (4%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
++E+K+P L ES++EAT+ WHKK G+ V R+E L++IETDKV+LE+PAP G++++I+
Sbjct: 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60
Query: 62 ITDGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNL-------------NTIVMPSAK 108
+G VT QV+ ID + ++ N + P+A+
Sbjct: 61 AEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAAR 120
Query: 109 KILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSR 168
K+ ++N L+ S + GTGK GR+ KEDVL L++ + +R
Sbjct: 121 KLAAENGLDASAV-KGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPA---AAPAPLGAR 176
Query: 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGF 228
EE VPM+RLR IAERLL++Q +A+LTTFNE++M ++DLR +YKD FEK+H VKLGF
Sbjct: 177 PEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGF 236
Query: 229 MSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIAD 288
MSFFVKAVV ALK+YP +NAS+DG++I+YH YYDIGIA+ + RGLVVP+LR+AD +S A+
Sbjct: 237 MSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAE 296
Query: 289 IEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKR 348
IEKKI E KA+D KL EE++GGTFTI+NGGVFGS++STPIINPPQSAILG+H IK+R
Sbjct: 297 IEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKER 356
Query: 349 VIVENNNVVIRPINYFALSYDHRIIDGREAVLSL 382
+ N +VIRP+ Y ALSYDHRIIDG+EAV L
Sbjct: 357 PVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFL 390
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 546 bits (1409), Expect = 0.0
Identities = 213/471 (45%), Positives = 295/471 (62%), Gaps = 18/471 (3%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M K +DV+VIGAGP GYVA+IR AQLG K A + E+ LGGTC NVGCIPSKAL
Sbjct: 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALV------EKGERLGGTCLNVGCIPSKAL 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L + E +++ EYGI+ + ++ +K+L RK+ +++ G+ L KKN + G
Sbjct: 55 LHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG 114
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A F H +++ + KETITA IIIATGS+ R PG D IL + AL +
Sbjct: 115 EARFVDP-----HTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFL 169
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+ +PK L I+G G IGLE S++ LGS+VT++E L D EI+K+ L K G+
Sbjct: 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGV 229
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I+LNTK+ ++ + VL+ + T D +L+AIGR PNT+ L ++ G
Sbjct: 230 KILLNTKVTAVEKKDDGVLVTLEDGEG------GTIEADAVLVAIGRKPNTDGLGLENAG 283
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-INFN 745
+++++ FI V+D TN+P IYAIGDV+ GPMLAH A EG + AE+I+G K + I++
Sbjct: 284 VELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYR 343
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V++T PEIASVG TE+ K+ I Y VG FPF AN RA +GET G VK++ D ++
Sbjct: 344 LIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKET 403
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
ILG HI+GP ASELI E +AIE A++ED+A H HP+LSEA+KEAA
Sbjct: 404 GRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 538 bits (1389), Expect = 0.0
Identities = 219/479 (45%), Positives = 315/479 (65%), Gaps = 22/479 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
+DVIVIG GPGGYVA+IR AQLG K A + E LGGTC NVGCIP+KALL +
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQLGLKVALV-------EKEYLGGTCLNVGCIPTKALLHS 53
Query: 450 SHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI 509
+ ++ +K+ + GI +NV+++ +KM +RKN ++KK G+ L KKNK+ G A
Sbjct: 54 AEVYDEIKH-AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAK 112
Query: 510 FTGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKARSFPG-VKFDENLILSNKGALEMI 567
F + + +ET+ AK IIIATGS+ RS PG FD +++++ GAL +
Sbjct: 113 FLDP-----GTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLE 167
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
VP+ L IIG GVIG+E SI+ LGS+VT++EM L D E++K L K+G+
Sbjct: 168 EVPESLVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVK 227
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
I+ NTK+ + K + + Y NK +TE +T +K+L+A+GR PNT L ++K+G+
Sbjct: 228 ILTNTKV--TAVEKNDDQVTYENK--GGETETLTG--EKVLVAVGRKPNTEGLGLEKLGV 281
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-INFNA 746
+++E I+V++ TN+P IYAIGDV+ GPMLAH A EGI+ AE+I+G++ + I+++A
Sbjct: 282 ELDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAHIDYDA 341
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P VIYT PE+ASVG TE+ K+ +G FPF AN +A LGET G VKI++D K+
Sbjct: 342 VPSVIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTG 401
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
EILG HIIGP A+ELI+EA +A+E + E++AR H HP+LSEA+KEAA++ + I+
Sbjct: 402 EILGAHIIGPHATELISEAALAMELEGTVEELARTIHPHPTLSEAIKEAALAALGKPIH 460
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 534 bits (1377), Expect = 0.0
Identities = 176/478 (36%), Positives = 266/478 (55%), Gaps = 15/478 (3%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M V+V+GAGP GY A+ R A LG +T C++ + LGG C NVGCIPSKAL
Sbjct: 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS------TLGGVCLNVGCIPSKAL 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L + E K + E+GI +++ KM RK ++K+ G+ + K K+ +G
Sbjct: 55 LHVAKVIEEAK-ALAEHGIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG 113
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
FTG N E+ + I IIA GS+ P + D+ I + ALE+
Sbjct: 114 LGKFTG---GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALEL 170
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPK+L ++G G+IGLE+G+++ RLGSEV ++EM + D++I K + KQ
Sbjct: 171 KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
NI+L TK+ ++ ++ + + K + + +D +L+A+GR+PN L+ +K G
Sbjct: 230 NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQR----YDAVLVAVGRVPNGKLLDAEKAG 285
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
++V+E FI V+ C TN+P+I+AIGD+V PMLAHK EG + AE I+G+KH +
Sbjct: 286 VEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKV 345
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P + YT PE+A VG TE+ K+ I Y FP+ A+ RA GM K++ D ++
Sbjct: 346 IPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETH 405
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+LG I+G A EL+ E +AIE +EDIA H HP+L E++ AA + E
Sbjct: 406 RVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGSIT 463
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 508 bits (1311), Expect = e-173
Identities = 203/472 (43%), Positives = 287/472 (60%), Gaps = 20/472 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+DVIVIGAGPGGYVA+IR AQLG K A ++ K+ LGGTC N GCIPSKAL
Sbjct: 1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE--KEK-----LGGTCLNRGCIPSKAL 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L + + ++S ++GI +NV ++ +K+ E KN ++ + G+ L KKNK+ G
Sbjct: 54 LHAAERADEARHSE-DFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG 112
Query: 507 HAIFTGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
A + ++++ ++T TAK II+ATGS+ R PG++ D +I ++ AL
Sbjct: 113 EAKLVDP-----NTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALN 167
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ VPK L +IG G IG+E S + LG+EVTI+E L D+EI+K A L K+G
Sbjct: 168 LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRG 227
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ I K ++ + V + + K E + D +L+A+GR PNT NL ++++
Sbjct: 228 IKIKTGAKAKKVEQTDDGVTVTLEDGG---KEETLE--ADYVLVAVGRRPNTENLGLEEL 282
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+K + FI V++ TN+PNIYAIGD+V GPMLAHKA EGI+ AE I+G H I++
Sbjct: 283 GVKT-DRGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYR 341
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V YT PE+ASVG TE K+ V FPF N +A LGET G VK++ D K
Sbjct: 342 GIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKD 401
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
E+LG H++G ASELI EA +AI + A+ ED+A H HP+LSEA+ EAA+
Sbjct: 402 GEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAAL 453
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 504 bits (1301), Expect = e-171
Identities = 175/479 (36%), Positives = 268/479 (55%), Gaps = 25/479 (5%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+ +DVIVIGAGP GYVA+ R A+LG K A I+ K LGGTC NVGCIPSKAL+
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE--KGP-----LGGTCLNVGCIPSKALIA 54
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGIL-FLFKKNKIKFFHGH 507
+ +F K+ E+GI+ ++ +K++ R + G++ L KK KI G
Sbjct: 55 AAEAFHEAKH-AEEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGT 113
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGV-KFDENLILSNKGALEM 566
A F + +++ E I AK I+IATGS+ PGV + +L++ A E+
Sbjct: 114 ARFVDP-----NTVEV---NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFEL 165
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+PK L +IG GVIGLE+G RLG +VT+ E L D E++K+A +L+K+
Sbjct: 166 DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-F 224
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I L K+ ++ + + + E D +L+A GR PNT+ L ++ G
Sbjct: 225 KIKLGAKVTSVEKSGDEKVEELEKGGKTETIE-----ADYVLVATGRRPNTDGLGLENTG 279
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHSINFN 745
++++E +V+++ +T++P IYA GDV P L H+A +EG + AE+ + ++
Sbjct: 280 IELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYH 339
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V++T P+IASVG TE+ LK I Y VG PF A RAR++G+ G VK+ +D K+
Sbjct: 340 PIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKT 399
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+LG HIIGP A LI A++ + ED+ R+ HP+LSE ++ A + ++ I
Sbjct: 400 GRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFSKLI 458
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 467 bits (1205), Expect = e-157
Identities = 188/484 (38%), Positives = 283/484 (58%), Gaps = 20/484 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M K +D+++IG GPGGYVA+IR QLG KTA + E LGGTC + GCIPSKAL
Sbjct: 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALV-------EKGKLGGTCLHKGCIPSKAL 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L ++ F+ K + +GI+ L+ K+ ERK+ I+ + G+ L KK KI FHG
Sbjct: 54 LHSAEVFQTAKKAS-PFGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG 112
Query: 507 HA-IFTGKIQNNFH---EIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
I I + ++ E I + ++IATGS+ PG+ FD ++S+
Sbjct: 113 IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDE 172
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
AL + +PK L I+G GVIGLE S+ G EVT++E + L T D E++K+ LL
Sbjct: 173 ALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLK 232
Query: 623 KQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
K G+ ++ K+ + + K+ VLI N + + + + DK+L+++GR PNT +
Sbjct: 233 KLGVRVVTGAKVLGLTLKKDGGVLIV---AEHNGEEKTLEA--DKVLVSVGRRPNTEGIG 287
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-H 740
++ + V E FI ++D C+T +IYAIGDV+ P LAH A EG M AEHI+G+K
Sbjct: 288 LENTDIDV-EGGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPR 346
Query: 741 SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKIL 800
++ A+P YT PE+ASVG TE+ K+ VG FPF AN +A GE+ G VK++
Sbjct: 347 PFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVV 406
Query: 801 SDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860
+D + +ILG+ +GP +ELI+E +A+E A ++A H HP+LSEA++EAA++ +
Sbjct: 407 ADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD 466
Query: 861 NRSI 864
++
Sbjct: 467 GHAL 470
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 458 bits (1181), Expect = e-154
Identities = 185/389 (47%), Positives = 276/389 (70%), Gaps = 19/389 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
IE+K+P+L+ESI+E T+ WHKK G+ V R+EN+++IETDKV+LE+P+P DG++ +I+
Sbjct: 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60
Query: 64 DGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNT-------------IVMPSAKKI 110
+G V S QV+A+++ ++ ++ + + P+A+++
Sbjct: 61 EGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRL 120
Query: 111 LSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSRLE 170
++ +++S + GTG GR+ KED++K + + + + N +R E
Sbjct: 121 AKEHGIDLSAVP-GTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAK-----APANFTRPE 174
Query: 171 ECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMS 230
E V M+RLR IAERL ++Q ++A+LTTFNE++M ++++LR +YK++FEK+H VKLGFMS
Sbjct: 175 ERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMS 234
Query: 231 FFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIE 290
FFVKAVV+ALK++P +NA +DG++I+Y YYDI +A+S+ RGLVVP++RNAD MS ADIE
Sbjct: 235 FFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIE 294
Query: 291 KKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVI 350
K+I + KA+D KL E+M+GGTFTI+NGGVFGS++STPIINPPQSAILG+H IK+R +
Sbjct: 295 KEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPV 354
Query: 351 VENNNVVIRPINYFALSYDHRIIDGREAV 379
N + IRP+ Y ALSYDHR+IDG+EAV
Sbjct: 355 AVNGQIEIRPMMYLALSYDHRLIDGKEAV 383
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 443 bits (1140), Expect = e-147
Identities = 204/479 (42%), Positives = 295/479 (61%), Gaps = 19/479 (3%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
++DV++IG GPGGY A+IR QLG K AC+ E LGGTC NVGC+PSKALL
Sbjct: 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACV------EGRSTLGGTCLNVGCMPSKALLH 55
Query: 449 TSHSFEN-VKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
S +E F GI + TLNL +M+++K+ ++ G+ FLF+KNK+ + G
Sbjct: 56 ASELYEAASGGEFAHLGIEVKP-TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW 114
Query: 508 AIF--TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
GK+ + ++ + AK I+IATGS+ PGV D I+ + GAL
Sbjct: 115 GRLDGVGKVVVKAED-----GSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALS 169
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ VPK L +IGAGVIGLE+GS+WRRLG++VT++E D E AK L KQG
Sbjct: 170 LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQG 229
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ L +K+ + V + + E + + D +L+AIGR P T L ++ +
Sbjct: 230 MKFKLGSKVTGATAGADGVSLTLE-PAAGGAAETLQA--DYVLVAIGRRPYTQGLGLETV 286
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
GL+ ++ ++ ND+ T++P ++ IGDV GPMLAHKAE+E + E I+G+ +N+
Sbjct: 287 GLETDKRG-MLANDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYG 345
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PE+A+VGKTE+ LK +Y VG FPF ANSRA+I ET G KIL+D ++
Sbjct: 346 LIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADART 405
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
DE+LG+H++GP SE+I E +A+EF AS+EDIA CH HP+ SEA+++AAM++E ++
Sbjct: 406 DEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGWAM 464
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 380 bits (977), Expect = e-124
Identities = 169/399 (42%), Positives = 252/399 (63%), Gaps = 23/399 (5%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
IE+K+P L E+++E T++ W KK G+ V + L+++ETDK +E+PAP G++ KI+
Sbjct: 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 62 ITDGSIVTSNQVIALIDTDISKLSSKTEI-------------KNKKDIKNLNTIVMPSAK 108
+ +G V VIA I+ + + + E + P+ +
Sbjct: 61 VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVR 120
Query: 109 KILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSR 168
++ + +++SK+ GTG GRI K+DV + E+ P + + + +
Sbjct: 121 RLAREAGIDLSKVK-GTGPGGRITKKDV------EAAVAEKAAAAAAPAPAAAAPASAAG 173
Query: 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGF 228
EE VPMSR+R IAER+++S+ LT FNE++M ++ LR K K++FEK+ VKL F
Sbjct: 174 EEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTF 232
Query: 229 MSFFVKAVVSALKQYPIINASVDGNN--IIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286
+SF VKAVV ALK++P +NAS+DG+ I+YHKY +IGIA+ + RGLVVP++R+AD S+
Sbjct: 233 LSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSL 292
Query: 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIK 346
A+I K+I + KA+D KL PEEM GGTFTISN G+FGS++ TPIINPPQ AILGV AI+
Sbjct: 293 AEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIE 352
Query: 347 KRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
+R +V +V+RP+ Y +LSYDHR+IDG EA L++
Sbjct: 353 ERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVAL 391
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 372 bits (957), Expect = e-121
Identities = 168/379 (44%), Positives = 227/379 (59%), Gaps = 26/379 (6%)
Query: 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDG 65
+K+P + +SISE T++ W KK G+ V +E + IETDKV +++ AP G+I KI +G
Sbjct: 47 IKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG 106
Query: 66 SIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGT 125
V ++ IDT P A + + K
Sbjct: 107 DTVEVGAPLSEIDTG----------------------GAPPAAAPAAAAAAKAEKTTPEK 144
Query: 126 GKDGRIIKEDVL--KVLSSIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIA 183
K E K E KP ++ + E VPMSR+R IA
Sbjct: 145 PKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARAD--PRETRVPMSRMRQRIA 202
Query: 184 ERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQY 243
ERL SQ A+LTTFNE +M ++++LR +YKD F+K+H VKLGFMS FVKA ALK+
Sbjct: 203 ERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKM 262
Query: 244 PIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDN 303
PI+NA +DG+ I+Y Y DI +A+++ GLVVP++RN + S A+IEK++ + KA++N
Sbjct: 263 PIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNN 322
Query: 304 KLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINY 363
KL E+M+GGTFTISNGGVFGS++ TPIINPPQSAILG+HAIKKR +V N +VIRPI Y
Sbjct: 323 KLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMY 382
Query: 364 FALSYDHRIIDGREAVLSL 382
AL+YDHR+IDGR+AV L
Sbjct: 383 LALTYDHRLIDGRDAVTFL 401
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 367 bits (945), Expect = e-119
Identities = 130/400 (32%), Positives = 216/400 (54%), Gaps = 36/400 (9%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E K+P L E ++E ++ W K G+ V + L ++ETDK +E+P+P G + K+++
Sbjct: 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVE 62
Query: 64 DGSIVTSNQVIALIDTD-------------------------ISKLSSKTEIKNKKDIKN 98
+G +V VIA+I+ + + ++
Sbjct: 63 EGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAA 122
Query: 99 LNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYL 158
P+ +K+ + +++S + G+G GRI KEDV ++
Sbjct: 123 AAAKASPAVRKLARELGVDLSTVK-GSGPGGRITKEDVEAAAAA-----AAPAAAAAAAA 176
Query: 159 DSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKF 218
+ + EE VP+S +R IA+R+++S+ T +E+++ +++ LR K
Sbjct: 177 AAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALR-----KQ 231
Query: 219 EKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPIL 278
K VKL F +KAV ALK++P +NAS D + I+ KY +IGIA+++ GL+VP++
Sbjct: 232 LKAIGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVI 291
Query: 279 RNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSA 338
R+AD S+ ++ ++I + KA++ KL PEE+ GGTFTISN G+FG TPIINPP+ A
Sbjct: 292 RDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVA 351
Query: 339 ILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
ILGV AI +R +V + +V+R + +LS+DHR+IDG +A
Sbjct: 352 ILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADA 391
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 352 bits (906), Expect = e-113
Identities = 184/493 (37%), Positives = 270/493 (54%), Gaps = 40/493 (8%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE--WKDNEENFALGGTCTNVGCIPSK 444
M ++DV+V+GAGPGGYVA+IR AQLG KTA +++ W GG C NVGCIPSK
Sbjct: 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW---------GGVCLNVGCIPSK 51
Query: 445 ALLQTS---HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKI 501
ALL+ + H F +F GI+ + VT + +R + + G+ FL KKNKI
Sbjct: 52 ALLRNAELAHIFTKEAKTF---GISGE-VTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKI 107
Query: 502 KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENL----- 556
HG+ FT N E+ + + ET+T IIATGS R PG EN+
Sbjct: 108 TEIHGYGTFTD---ANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYEE 164
Query: 557 -ILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615
ILS +PK + I GAG IG+E + + G +VTI+E L D E++K
Sbjct: 165 QILSR-------ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSK 217
Query: 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675
+ K G+ I+ TK+ I N V + S K K + + + DK+L AIG P
Sbjct: 218 EIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDG--KAQELEA--DKVLQAIGFAP 273
Query: 676 NTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
++K G+ + + I ++D TN+P+IYAIGDV LAH AE +G++ AE I
Sbjct: 274 RVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETI 333
Query: 736 SG-QKHSI-NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGET 793
+G + + ++ +P + P++AS G TE+ ++ V FPF AN +A LG+
Sbjct: 334 AGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDP 393
Query: 794 SGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMK 853
+G VK+++D K E+LG H+IGP SEL+ E +A ++ ++E++AR H HP+LSEA+K
Sbjct: 394 TGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALK 453
Query: 854 EAAMSIENRSINY 866
EA + IN+
Sbjct: 454 EAFHGLAGHMINF 466
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 345 bits (887), Expect = e-110
Identities = 177/469 (37%), Positives = 265/469 (56%), Gaps = 24/469 (5%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
++VIG GP GYVA+I AQ G IDE LGGTC N GC+P+K+LL+++
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-------LGGTCLNEGCMPTKSLLESAEV 55
Query: 453 FENVKNSFFEYGI--NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
+ VK + +GI +++++ ++M RK+ I+ + GI +L KKNKIK G A F
Sbjct: 56 HDKVKKAN-HFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASF 114
Query: 511 TGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV 569
H +++ K E + A+ IIA GS+ P FD I+++K A+ + ++
Sbjct: 115 ETD-----HRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSI 169
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
P L I+G GVIG E SI+ RLG++VTI+EM+ L DE+IA L G+ I
Sbjct: 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIF 229
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689
+ + K+ L Y V E + L+++GR P LN++K G++
Sbjct: 230 TGAALKGLNSYKKQALFEYEGSIQEVNAEFV-------LVSVGRKPRVQQLNLEKAGVQF 282
Query: 690 NENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPF 749
+ N I VN++ +TN+P+IYA GDV+ G LAH A EG A H SG+ +N++A+P
Sbjct: 283 S-NKGISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPR 341
Query: 750 VIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEIL 809
IYT PEIASVG TE+ ++ +G FPF AN +A I+GE +G VK++ + K EI+
Sbjct: 342 CIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIV 401
Query: 810 GIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
GI IIGP A+ELI + + I +++ + HP+LSEA+ EA +
Sbjct: 402 GISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQ 450
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 325 bits (835), Expect = e-102
Identities = 146/477 (30%), Positives = 240/477 (50%), Gaps = 28/477 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+ +D IVIGAG G + R A LG K A I E LGGTC N GC+P+K L
Sbjct: 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALI-------ERGLLGGTCVNTGCVPTKTL 54
Query: 447 LQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFF 504
+ ++ + + + EYG++ V+++ + ++ RK I ++ G + + F
Sbjct: 55 IASARAAHLARRAA-EYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVF 113
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKG 562
GHA F + +++ ET+ AK I I TG++A PG+ DE L+N+
Sbjct: 114 RGHARFESP-----NTVRVGG---ETLRAKRIFINTGARAAIPPIPGL--DEVGYLTNET 163
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
+ +P+ L IIG G IGLE ++RR GSEVT++E L DE++A +L
Sbjct: 164 IFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILE 223
Query: 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682
++G+++ LN + ++ + + + + EI +L+A+GR+PNT++L +
Sbjct: 224 REGIDVRLNAECIRVERDGDGIAVGLD--CNGGAPEIT---GSHILVAVGRVPNTDDLGL 278
Query: 683 DKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHS 741
+ G++ + +I V+D T P IYA GD H A + +VA ++ G +
Sbjct: 279 EAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRK 338
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
++ +P+ YT P +A VG TE +K VG P RA GET G +K++
Sbjct: 339 VSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVV 398
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
D +D ILG I+G E+I E + A+ A ++R H+HP++SE + A +
Sbjct: 399 DADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQA 455
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 320 bits (821), Expect = e-100
Identities = 141/472 (29%), Positives = 251/472 (53%), Gaps = 26/472 (5%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D+++IG+G + A+I+ A+LG A + E LGGTC NVGC+PSK LL+ +
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMV-------ERGPLGGTCVNVGCVPSKMLLRAA 53
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKK-NNSGILFLFKKNKIKFFHGHAI 509
+ F G V ++ ++LE K ++++ + + + + G A
Sbjct: 54 EVAHYARKPPF--GGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRAR 111
Query: 510 FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKGALEMI 567
F +++ + +E AK +IATG++ PG+K E L+++ AL +
Sbjct: 112 FKDP-----KTVKV-DLGREVRGAKRFLIATGARPAIPPIPGLK--EAGYLTSEEALALD 163
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
+P+ L +IG G IG+E+ + RLGSEVTIL+ S L + EI+ L ++G+
Sbjct: 164 RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIE 223
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
++ + ++ + + +I + + D+LL+A GR PNT+ L ++K G+
Sbjct: 224 VVTSAQVKAVSVRGGGKIITVE---KPGGQGEVEA--DELLVATGRRPNTDGLGLEKAGV 278
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEH-ISGQKHSINFNA 746
K++E I+V++ T+ P IYA GDV G L + A +EG++ AE+ + G ++
Sbjct: 279 KLDERGGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLV 338
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P V++T P +ASVG TE +K I + P RARI +T G +K++++ +
Sbjct: 339 IPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTG 398
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
++LG+ ++ P A+E+I EA +AI + +D+ H P+++E +K AA +
Sbjct: 399 KVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQT 450
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 310 bits (797), Expect = 8e-97
Identities = 159/482 (32%), Positives = 260/482 (53%), Gaps = 36/482 (7%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
++D++VIG+GP G A+++ A+LG + A I E +GG CT+ G IPSKAL +
Sbjct: 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVI------ERYRNVGGGCTHTGTIPSKALREA 58
Query: 450 SHSFENV-KNSFF-EYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+N + Y + +T +L R +++I K +++N++ G
Sbjct: 59 VLRLIGFNQNPLYSSYRV-KLRITF--ADLLARADHVINKQVEVRRGQYERNRVDLIQGR 115
Query: 508 AIFTGKIQNNFHEIQII--NKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
A F H +++ + ET+TA I+IATGS+ P V FD I + L
Sbjct: 116 ARFVDP-----HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILS 170
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK-AFHLLNKQ 624
+ ++P+ L I GAGVIG E SI+ LG +VT++ L+ +D+EI+ ++HL +
Sbjct: 171 LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRD-S 229
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ I N ++ ++ + V+++ + +K D LL A GR NT+ LN++
Sbjct: 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKK-IKA-------DCLLYANGRTGNTDGLNLEN 281
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ--KHSI 742
GL+ + + VN+N +T +P+IYA+GDV+ P LA + ++G + A+H G+ H I
Sbjct: 282 AGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLI 341
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSD 802
+P IYT PEI+SVGKTEQ L + Y VG F +RA+I G+ GM+KIL
Sbjct: 342 ED--IPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFH 399
Query: 803 MKSDEILGIHIIGPMASEL--IAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860
++ EILG+H G A+E+ I +A+ +E + + E +P+++EA + AA+
Sbjct: 400 RETLEILGVHCFGERATEIIHIGQAI--MEQKGTIEYFVNTTFNYPTMAEAYRVAALDGL 457
Query: 861 NR 862
NR
Sbjct: 458 NR 459
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 297 bits (762), Expect = 6e-92
Identities = 161/385 (41%), Positives = 230/385 (59%), Gaps = 36/385 (9%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
+E +P + ESI++ TL + KK GE V +E + IETDKV +++ +P G+I + ++
Sbjct: 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVK 151
Query: 64 DGSIVTSNQVIALIDTD---ISKLSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISK 120
+G V +A+I S+++ +I D K PS
Sbjct: 152 EGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPK-------PSPP------------ 192
Query: 121 INNGTGKDGRIIKEDVLKVLSSIKNINEE---KQEKYKPYLDSISIKNNSRLEECVPMSR 177
+D + K + V K + KQ +P L E VPM+R
Sbjct: 193 -----AEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPP------KERERRVPMTR 241
Query: 178 LRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVV 237
LR +A RL SQ A+LTTFNE++M +++ LR +YKD F ++H VKLG MS F+KA V
Sbjct: 242 LRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAV 301
Query: 238 SALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFI 297
SAL+ P++NA +DG++IIY Y DI IA+ +S+GLVVP++R AD M+ A+IEK IN
Sbjct: 302 SALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLA 361
Query: 298 NKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVV 357
KA + + +EM+GG+FT+SNGGV+GS++STPIINPPQSAILG+H+I R +V +VV
Sbjct: 362 KKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVV 421
Query: 358 IRPINYFALSYDHRIIDGREAVLSL 382
RP+ Y AL+YDHR+IDGREAV L
Sbjct: 422 PRPMMYVALTYDHRLIDGREAVYFL 446
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 284 bits (730), Expect = 4e-86
Identities = 128/414 (30%), Positives = 213/414 (51%), Gaps = 40/414 (9%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
++EVK+P + E I+E ++ W K G+ V +++LI +ETDK +E+P+P G++ +I
Sbjct: 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176
Query: 62 ITDGSIVTSNQVIALIDTDI----SKLSSKTEIKNKKDIKNLN----------------- 100
+ G V+ ++ +I+ + +
Sbjct: 177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236
Query: 101 ------TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK----VLSSIKNINEEK 150
P+ +++ + +++S++ GTGK GRI KEDV +S+
Sbjct: 237 AAPGKAPHASPAVRRLARELGVDLSQVK-GTGKKGRITKEDVQAFVKGAMSAAAAAAAAA 295
Query: 151 QEKYKPYLDSISIK--NNSRLE--ECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQS 206
L + + S+ E P+SR++ A L +S +T F+E ++
Sbjct: 296 AAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD 355
Query: 207 IIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIG 264
+ LR + K + EK VKL + FF+KAVV+ALK++P+ NAS+D G+ + Y KY++IG
Sbjct: 356 LEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIG 414
Query: 265 IAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFG 324
A+ + GLVVP++++ D S+ +I ++I E KA+D KL P++M GG FTIS+ G G
Sbjct: 415 FAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIG 474
Query: 325 SMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
TPIIN P+ AILGV + + + + V R + +LSYDHR+IDG A
Sbjct: 475 GTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATA 528
Score = 67.5 bits (166), Expect = 1e-11
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA IE K+P + E + E ++ W KEG+ V ++ L+ +ETDK +E+P+P G++ +I
Sbjct: 1 MA-IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEI 58
Query: 61 IITDGSIVTSNQVIALIDTD 80
+ G V+ ++A+I+
Sbjct: 59 KVKVGDTVSVGGLLAVIEAA 78
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase
(catalytic domain). These proteins contain one to three
copies of a lipoyl binding domain followed by the
catalytic domain.
Length = 212
Score = 255 bits (655), Expect = 9e-80
Identities = 94/195 (48%), Positives = 137/195 (70%), Gaps = 2/195 (1%)
Query: 186 LLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPI 245
+ +S+ T +E+++ +++ LR K K+ +KE +KL F+ F VKAV ALK++P
Sbjct: 1 MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKEG-LKLTFLDFLVKAVALALKEFPE 59
Query: 246 INASVDGNN-IIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNK 304
+NAS DG+ I+Y KY +IGIA+++ GL+VP++RNAD S+ +I K+I + +A+D K
Sbjct: 60 LNASWDGDAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGK 119
Query: 305 LLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYF 364
L PE++ GGTFTISN G+FG TPIINPPQ AILGV AI+KR +V + +VIR +
Sbjct: 120 LKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVVVDGEIVIRKVMPL 179
Query: 365 ALSYDHRIIDGREAV 379
+LS+DHR+IDG EA
Sbjct: 180 SLSFDHRVIDGAEAA 194
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 246 bits (631), Expect = 5e-73
Identities = 133/476 (27%), Positives = 223/476 (46%), Gaps = 44/476 (9%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLA-QLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445
M K++D+IVIG G GG +AS A G K A I E LGGTC NVGC+P K
Sbjct: 1 MTKDYDLIVIGGGSGG-IASANRAAMYGAKVALI-------EAKRLGGTCVNVGCVPKKL 52
Query: 446 LLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
+ + E + YG + + K++ ++ I + + + N +
Sbjct: 53 MWYGAQIAEAFHDYAPGYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIE 112
Query: 506 GHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
G A F H +++ E TA +I+IATG + S P + E I S+ G
Sbjct: 113 GFARFVDA-----HTVEV---NGERYTADHILIATGGRP-SIPDIPGAEYGITSD-GFFA 162
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ +PK++ ++GAG I +E + LGSE + L D +I + + K+G
Sbjct: 163 LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKG 222
Query: 626 LNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
+ + N ++ N + L + + T D L+ AIGR PNT+ L ++
Sbjct: 223 IRLHTNAVPKAVEKNADGSLTLTLEDGETL--------TVDCLIWAIGREPNTDGLGLEN 274
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSI 742
G+K+NE +IIV++ TN+P IYA+GDV L A G ++E + K +
Sbjct: 275 AGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKL 334
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PF------LANSRARILGETS 794
+++ +P V+++ P I +VG TE+ ++ NV ++ F L R
Sbjct: 335 DYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC----- 389
Query: 795 GMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
++K++ K ++++G+H IG A E+I +AI+ A+ D +HP+ +E
Sbjct: 390 -LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 246 bits (629), Expect = 1e-71
Identities = 139/440 (31%), Positives = 223/440 (50%), Gaps = 64/440 (14%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
EVK+P+L ES++E T+ +W K G+ V +E L+++ TDKV E+P+P G + +I +
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187
Query: 65 GSIVTSNQVIALIDTDISKLSSKTEIKN--------------KKDIKNL----------- 99
V V+A+I + + E + +
Sbjct: 188 DDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAP 247
Query: 100 -----------------NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
V P +K+ D +++S + GTG GRI K+DVL +
Sbjct: 248 AKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVK-GTGVGGRIRKQDVLAAAKA 306
Query: 143 IKNINEEKQEKYKPYLDSISIKNNSRLEECVP-----------MSRLRLCIAERLLQSQA 191
+ E + P + + + P M+R+R A++ ++S
Sbjct: 307 AE---EARAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTIESLQ 363
Query: 192 NSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASV- 250
SA LT +E++M + LR + K+ F +++ V L F+ FFV+AV ALK +P +NAS
Sbjct: 364 TSAQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYN 423
Query: 251 -DGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEE 309
+ + YH +GIA+ + RGL+VP++ NA +S+ + K IN+ +A+DNKL P+E
Sbjct: 424 AETKEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDE 483
Query: 310 MSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKR--VIVE---NNNVVIRPINYF 364
+SGGTFTI+N G G++ TPI+NPPQ+AILG AI KR VI + ++ IR + Y
Sbjct: 484 LSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYL 543
Query: 365 ALSYDHRIIDGREAVLSLMS 384
L+YDHR++DG +A L +
Sbjct: 544 PLTYDHRLVDGADAGRFLTT 563
Score = 63.1 bits (153), Expect = 3e-10
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
VK+P L ES++E T+ +W K G+ V +E L+++ TDKV E+P+P G++ +I
Sbjct: 3 ESVKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAP 62
Query: 64 DGSIVTSNQVIALI 77
+ V V+A+I
Sbjct: 63 EDDTVEVGGVLAII 76
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 240 bits (614), Expect = 9e-69
Identities = 172/598 (28%), Positives = 265/598 (44%), Gaps = 93/598 (15%)
Query: 345 IKKRVIV-ENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF----IMN---KNFDVIVI 396
I E+ ++ + LS E L F MN + +DV +I
Sbjct: 66 ISLGASKQESPGILTPMPSSARLSSPQP---RSEKSLRANGFATSQSMNFSDEEYDVGII 122
Query: 397 GAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENV 456
G G GG+ A+I + G K D ++GGTC NVGCIPSKALL + + +
Sbjct: 123 GCGVGGHAAAINAMERGLKVIIFTGDDD-----SIGGTCVNVGCIPSKALLYATGKYREL 177
Query: 457 KN--SFFEYGINTQ------------------NVTLNLQKMLERKNNIIKKNNSGILFLF 496
KN + YGI T V +++ K+ E ++I K GI
Sbjct: 178 KNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGL 237
Query: 497 KKNKIKFFHGHAIFTGKIQNNFHEIQIIN--KTKETITAKYIIIATGSKARSFPGVKFDE 554
K K H + + + + I K+ + K IIIATGS ++ D+
Sbjct: 238 KSKKFCKNSEHVQVIYE-RGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQ 296
Query: 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIA 614
+ ++ A+++ + + I+G G+IGLE I+ LGSEV E S L +D ++A
Sbjct: 297 KSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVA 356
Query: 615 KKAFHLLNK-QGLNIILNTKIHDIKINKEN--VLINYSNKST-------NVKTEIITSIF 664
K + K + + + LNT I ++ K N V+I +S + T +I +
Sbjct: 357 KYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYV 416
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN------IPNIYAIGDVVRGP 718
D L+A GR PNTNNL +DK+ +++ F+ V+++ NI+ IGD
Sbjct: 417 DSCLVATGRKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ 475
Query: 719 MLAHKAEEEGIMVAEHISGQKHS-------------INFNALPFVIYTFPEIASVGKTEQ 765
MLAH A + + V + I G+ I + +P V YT PE+A +G TE+
Sbjct: 476 MLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEK 535
Query: 766 YLKKHNISYNVG--IFPFLANSRA----------------------RILGETSGMVKILS 801
K+ NVG I + ANS+ + T GMVKI+
Sbjct: 536 EAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVY 595
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859
+ EILG+ I+G AS LI E V+AI + S +D+A + H HP++SE + A +I
Sbjct: 596 LKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAI 653
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 221 bits (565), Expect = 6e-66
Identities = 95/331 (28%), Positives = 148/331 (44%), Gaps = 51/331 (15%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV++IG GP G A+IRLA+LG K A I+ GGTC N GC+P K LL+ +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIER---------EGGTCYNRGCLPKKLLLEVAE 51
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
E L + K+ G+ L + G
Sbjct: 52 GLELAIG-------------------LALPEEVYKEF--GVEVLLGTEVVDIDRGEKTVV 90
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGVKFDENLILSN-KGALEMIN 568
K +T IT +IIATG++ R PGV+ + + LE++
Sbjct: 91 LKD----------VETGREITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELLE 140
Query: 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628
+PK++ ++G G IGLE+ + +LG EVT++E L D+EI+ L K L +
Sbjct: 141 LPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGV 200
Query: 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
T + + + + E+ D +L+AIGR PNT L ++ G++
Sbjct: 201 ---TVLLVVVVVVKVGDGKVVEVKLGDGEELDA---DVVLVAIGRRPNTELL--EQAGVE 252
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPM 719
++E +I+V++ T++P IYA GDV G
Sbjct: 253 LDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 226 bits (579), Expect = 5e-64
Identities = 108/414 (26%), Positives = 194/414 (46%), Gaps = 41/414 (9%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
+ +V +P + E + K G+ V ++LI +E DK +E+PAP G + +I
Sbjct: 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 262
Query: 62 ITDGSIVTSNQVIALIDTDISKLSS--------------------------KTEIKNKKD 95
+ G V + +I + + + ++ K E K++
Sbjct: 263 VNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFA 322
Query: 96 IKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK-VLSSIKNINEEKQEKY 154
+ P +++ + + ++K+ GTG+ GRI+KEDV V ++K
Sbjct: 323 ENDAYVHATPLVRRLAREFGVNLAKVK-GTGRKGRILKEDVQAYVKDAVKRAEAAPAAAA 381
Query: 155 K----PYLDSISIKNNSRLEEC--VPMSRLRLCIAERLLQSQANSAILTTFNEINMQSII 208
P L + S+ E V + R++ L ++ +T F++ ++ +
Sbjct: 382 AGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441
Query: 209 DLRLKYKDK--FEKEHNVKLGFMSFFVKAVVSALKQYPIINASV--DGNNIIYHKYYDIG 264
R K ++ +++ VK+ + F +KAV +AL+Q P N+S+ DG + KY +IG
Sbjct: 442 AFR-KQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIG 500
Query: 265 IAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFG 324
IA+ + GLVVP+ ++ + I ++ +++ + KA+D KL +M GG FTIS+ G G
Sbjct: 501 IAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLG 560
Query: 325 SMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
+ TPI+N P+ AILGV + R + +LSYDHR+IDG +
Sbjct: 561 TTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDGADG 614
Score = 58.1 bits (141), Expect = 1e-08
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA IE+K+P + E + K G+ V ++LI +E DK +E+P+PQ G++ +I
Sbjct: 1 MA-IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEI 57
Query: 61 IITDGSIVTSNQVIALID 78
+ G V + +I + +
Sbjct: 58 KVKVGDKVETGALIMIFE 75
Score = 50.0 bits (120), Expect = 4e-06
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
A +V +P + E + K G+ V ++LI +E DK +E+PAP G + +I
Sbjct: 104 AAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 161
Query: 62 ITDGSIVTSNQVIALIDT 79
+ G V++ +I + +
Sbjct: 162 VNVGDKVSTGSLIMVFEV 179
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 219 bits (559), Expect = 4e-63
Identities = 124/427 (29%), Positives = 203/427 (47%), Gaps = 49/427 (11%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
++ +P LS +++ L W KKEG+ V + + +IETDK +E A ++G + KI++ +
Sbjct: 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60
Query: 65 GS-IVTSNQVIALIDTD---------------------------------ISKLSSKTEI 90
G+ V N+ IA++ + K S +
Sbjct: 61 GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120
Query: 91 KNKKDIKNLNTIVM---------PSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141
++ + P AKK+ + +++S + G+G +GRI+K+D+ +
Sbjct: 121 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA-GSGPNGRIVKKDIESFVP 179
Query: 142 SIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNE 201
++ P + ++ E VP+S +R IA+RLL+S+ E
Sbjct: 180 QSPASANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIE 239
Query: 202 INMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYY 261
N+ ++ LR + + KL F +KA AL++ P N+S N I +K
Sbjct: 240 CNVDKLLALRKELNAMASEV--YKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNV 297
Query: 262 DIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGG 321
DI +A+++ GL+ PI+RNAD ++ I +I + +A++NKL PEE GGTFTISN G
Sbjct: 298 DISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLG 357
Query: 322 VFGSMLSTPIINPPQSAILGVHAIKKRVIVEN---NNVVIRPINYFALSYDHRIIDGREA 378
+FG T IINPPQ+ IL V A++ +V+N + I LS DHR+IDG
Sbjct: 358 MFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVG 417
Query: 379 VLSLMSF 385
L SF
Sbjct: 418 AEFLKSF 424
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 213 bits (545), Expect = 4e-61
Identities = 135/470 (28%), Positives = 219/470 (46%), Gaps = 40/470 (8%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
++D+ VIGAG GG A+ A LG K A E F +GGTC GC+P K ++
Sbjct: 2 DYDLFVIGAGSGGVRAARLAAALGAKVAIA-------EEFRVGGTCVIRGCVPKKLMVYA 54
Query: 450 SH---SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
S FE+ YG + +K+L K+ I + + + G
Sbjct: 55 SQFAEHFEDAAG----YGWTVGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLDG 110
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKGAL 564
A G + ++++ K T TA+ I+IA G + + PG E I SN+ A
Sbjct: 111 RAELVGP-----NTVEVLASGK-TYTAEKILIAVGGRPPKPALPGH---ELGITSNE-AF 160
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ +PK + I G G I +E I+R LG + T++ L D+++ + L ++
Sbjct: 161 HLPTLPKSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEER 220
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ I+ I I + + L K+T K E I + D +L A GR PNTN L ++
Sbjct: 221 GIRILPEDSITSISKDDDGRL-----KATLSKHEEI--VADVVLFATGRSPNTNGLGLEA 273
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAE-HISGQKHSIN 743
G+++N+ I V++ T+ P+IYA+GDV L A E AE S +
Sbjct: 274 AGVRLNDLGAIAVDEYSRTSTPSIYAVGDVTDRINLTPVAIHEATCFAETEFGNNPTSFD 333
Query: 744 FNALPFVIYTFPEIASVGKTE-QYLKKHN--ISYNVGIFPFLANSRARILGETSGMVKIL 800
+ + +++ P I +VG TE + +K Y P A R + ++K++
Sbjct: 334 HDLIATAVFSQPPIGTVGLTEEEARRKFGDIEVYRAEFRPMKATFSGR---QEKTLMKLV 390
Query: 801 SDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
D K D++LG H++GP A+E+I IA++ A+ +D VHP+ +E
Sbjct: 391 VDAKDDKVLGAHMVGPDAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAE 440
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 211 bits (538), Expect = 3e-60
Identities = 131/468 (27%), Positives = 229/468 (48%), Gaps = 45/468 (9%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL-GGTCTNVGCIPSKALL 447
+D+IVIG G G + +LA G K A + EE+ A+ GGTC N+GCIP+K LL
Sbjct: 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALV------EESKAMYGGTCINIGCIPTKTLL 55
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+ KN FE + T+N + L KN + + + +
Sbjct: 56 VAAE-----KNLSFEQVMATKNTVTS---RLRGKNYAMLAGSG----------VDLYDAE 97
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP--GVKFDENLILSNKGALE 565
A F + N E+Q K +TA+ I+I TG+ + P G+ +++ S G
Sbjct: 98 AHF---VSNKVIEVQA-GDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDST-GIQS 152
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ +P++L IIG G IGLE ++ +LGS+VT+L+ +S L + +A A + + G
Sbjct: 153 LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDG 212
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ +LN ++K + + VL+ T +T FD LL A GR PNT L ++
Sbjct: 213 ITFLLNAHTTEVKNDGDQVLV-----VTEDETY----RFDALLYATGRKPNTEPLGLENT 263
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK---HSI 742
+++ E I V+D C+T++P ++A+GDV GP + + ++ +V +++G
Sbjct: 264 DIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLE- 322
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSD 802
+ +P ++ P ++ VG TE+ K+ + Y V A RA + + G K++ +
Sbjct: 323 DRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVN 382
Query: 803 MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
++ EILG + G + E+I +A++ + + HP+++E
Sbjct: 383 TETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAE 430
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 210 bits (535), Expect = 1e-59
Identities = 134/468 (28%), Positives = 228/468 (48%), Gaps = 30/468 (6%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
K++D +VIG G GG ++ R A+ G K ++ K LGGTC NVGC+P K +
Sbjct: 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-------LGGTCVNVGCVPKKVMWY 53
Query: 449 TSHSFENVKNSFFEYGINTQNV-TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
S E + ++ +YG T N ++ E+++ + + N +KNK+ GH
Sbjct: 54 ASDLAERMHDAA-DYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGH 112
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMI 567
A FT + TA +I+IATG K SFP L + G +
Sbjct: 113 ARFTKD--------GTVEVNGRDYTAPHILIATGGKP-SFPENIPGAELGTDSDGFFALE 163
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
+PK++ I+GAG I +E+ + LGSE ++ L + D I++ K+G+N
Sbjct: 164 ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGIN 223
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
+ +K ++ E L+ + I D+L+ AIGR PNT L ++ +G+
Sbjct: 224 VHKLSKPVKVEKTVEGKLVIHFEDGK----SIDDV--DELIWAIGRKPNTKGLGLENVGI 277
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS--INFN 745
K+NE IIV++ TN+P IYA+GDVV L A G ++E + K +++N
Sbjct: 278 KLNEKGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYN 337
Query: 746 ALPFVIYTFPEIASVGKTE-QYLKKHNISYNVGIF--PFLANSRARILGETSGMVKILSD 802
+P V+++ P I ++G TE + ++K+ N+ ++ F A + +K++
Sbjct: 338 NVPTVVFSHPPIGTIGLTEKEAIEKYGKE-NIKVYNSSFTPMYYAMTSEKQKCRMKLVCA 396
Query: 803 MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
K ++++G+H IG E++ +AI+ A+ D +HP+ SE
Sbjct: 397 GKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 204 bits (520), Expect = 2e-57
Identities = 127/489 (25%), Positives = 235/489 (48%), Gaps = 32/489 (6%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEE--NFALGGTCTNVGCIPSKALL 447
++D+IVIG G GG A+ A G K +D + +GGTC NVGCIP K +
Sbjct: 2 DYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMH 61
Query: 448 QTSHSFENVKNSFFEYGINTQN-VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
Q + + +K+S YG + V + ++++E N I N G ++ K+K+ +
Sbjct: 62 QAALLGQALKDSR-NYGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENA 120
Query: 507 HAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
+A F K H I+ NK ++ +A+ +IATG + R +PG+ + L +++
Sbjct: 121 YAEFVDK-----HRIKATNKKGKEKIYSAERFLIATGERPR-YPGIPGAKELCITSDDLF 174
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ P K ++GA + LE +G +VT++ + S L D++ A K + +
Sbjct: 175 SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDCANKVGEHMEEH 233
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ ++ + VL+ +++ T I +D +L+AIGR T LN++
Sbjct: 234 GVKFKRQFVPIKVEQIEAKVLVEFTDS-----TNGIEEEYDTVLLAIGRDACTRKLNLEN 288
Query: 685 IGLKVNE-NNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI-SGQKHS 741
+G+K+N+ I ++ +TN+P IYA+GD++ P L A + G ++A+ + G
Sbjct: 289 VGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVI 348
Query: 742 INFNALPFVIYTFPEIASVGKTEQ-YLKKHNISYNVGIF-----PFLANSRARILGETSG 795
++ +P ++T E + G +E+ ++K NV +F P +R
Sbjct: 349 CDYENVPTTVFTPLEYGACGLSEEKAVEKFGEE-NVEVFHSYFWPLEWTIPSRDNHNKC- 406
Query: 796 MVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
K++ + K +E ++G H++GP A E+ A+ + +D+ +HP +E
Sbjct: 407 YAKLVCNKKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVF-- 464
Query: 855 AAMSIENRS 863
+S+ RS
Sbjct: 465 TTLSVTKRS 473
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 200 bits (510), Expect = 4e-56
Identities = 122/471 (25%), Positives = 237/471 (50%), Gaps = 23/471 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
N + VIG+G A+++ + G + I E +GGTC N+GC+PSK +++
Sbjct: 6 NLHIAVIGSGGSAMAAALKATERGARVTLI-------ERGTIGGTCVNIGCVPSKIMIRA 58
Query: 450 SHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKK-NNSGILFLFKKNK-IKFFHGH 507
+H + S F+ G++ Q ++ +L ++ +++ S + ++N I +G
Sbjct: 59 AHIAHLRRESPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGE 118
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMI 567
A F + + + + ++T+ I TG++ P E L++ ALE+
Sbjct: 119 ARF---VDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELD 175
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
++P++L +IGA V+ LE+ + RLGS VT+L S L+ D + + ++G+
Sbjct: 176 HIPERLLVIGASVVALELAQAFARLGSRVTVLA-RSRVLSQEDPAVGEAIEAAFRREGIE 234
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
++ T+ + ++Y+ + ++T T ++LL+A GR PNT NLN++ IG+
Sbjct: 235 VLKQTQASE---------VDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGV 285
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNAL 747
+ E I ++++ +T + IYA GD P + A G A +++G S++ +A+
Sbjct: 286 E-TERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAM 344
Query: 748 PFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDE 807
P VI+T P++A+VG +E + + RA + +T G +K++++ S
Sbjct: 345 PEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGR 404
Query: 808 ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
+LG+ ++ A ELI AV+A+ R + +IA + ++ E +K A +
Sbjct: 405 LLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQT 455
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 196 bits (501), Expect = 5e-54
Identities = 131/480 (27%), Positives = 226/480 (47%), Gaps = 50/480 (10%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
V VIG+G A+++ + G + I E +GGTC NVGC+PSK +++ +H
Sbjct: 101 VAVIGSGGAAMAAALKAVEQGARVTLI-------ERGTIGGTCVNVGCVPSKIMIRAAHI 153
Query: 453 FENVKNSFFEYGINTQNVTLNLQKMLER-----------KNNIIKKNNSGILFLFKKNKI 501
+ S F+ GI T++ ++L + K I N I L
Sbjct: 154 AHLRRESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVL------ 207
Query: 502 KFFHGHAIFTGKIQNNFHE--IQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLI 557
HG A F + +++ + + + +IATG+ PG+K E
Sbjct: 208 ---HGEARF-----KDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK--ETPY 257
Query: 558 LSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617
++ AL +P++L +IG+ V+ LE+ + RLGS+VTIL S+ F D I +
Sbjct: 258 WTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRE-DPAIGEAV 316
Query: 618 FHLLNKQGLNIILNTKIHDIK-INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
+G+ ++ +T+ + ++ E VL T E+ DKLL+A GR PN
Sbjct: 317 TAAFRAEGIEVLEHTQASQVAHVDGEFVL-------TTGHGELRA---DKLLVATGRAPN 366
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736
T +L +D G+ VN I+++ T++P+IYA GD P + A G A +++
Sbjct: 367 TRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMT 426
Query: 737 GQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGM 796
G +++ A+P V++T P++A+VG +E I + RA +T G
Sbjct: 427 GGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF 486
Query: 797 VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+K++ + S ++G+ + P A ELI A +AI R + +++A + ++ E +K AA
Sbjct: 487 IKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAA 546
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 191 bits (487), Expect = 4e-53
Identities = 125/478 (26%), Positives = 226/478 (47%), Gaps = 47/478 (9%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D+I+IG G G + R A + A +++ GGTC NVGCIP+K + +
Sbjct: 2 YDLIIIGTGSGNSILDERFADK--RIAIVEKG-------TFGGTCLNVGCIPTKMFVYAA 52
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERK-NNIIKKNNSGILFLFKKN-KIKFFHGHA 508
++ + G++ + + ++ R I G + + I + GHA
Sbjct: 53 DVARTIREAA-RLGVDAELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHA 111
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP-----GVKFDENLILSNKGA 563
F G ++ E ITA ++IA GS+ P GV++ ++
Sbjct: 112 RFIGP-----KTLRT--GDGEEITADQVVIAAGSRPVIPPVIADSGVRYH-----TSDTI 159
Query: 564 LEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623
+ + +P+ L I+G G I E ++ LG VT++ S L +D++I+++ F L
Sbjct: 160 MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISER-FTELAS 218
Query: 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNID 683
+ ++ L + + + V + + ST + + D LL+A GR+PN + L+
Sbjct: 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGST------VEA--DVLLVATGRVPNGDLLDAA 270
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAE---HISGQKH 740
G+ V+E+ ++V++ T+ ++A+GDV L H A E +V H
Sbjct: 271 AAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIA 330
Query: 741 SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF--LANSRARILGETSGMVK 798
S + +P ++T P+IASVG TE + + V + + +A A + +T+G VK
Sbjct: 331 S-DHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWA--MEDTTGFVK 387
Query: 799 ILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICH-VHPSLSEAMKEA 855
+++D + +LG HIIGP AS LI + A+ F + ++AR + +HP+L E ++ A
Sbjct: 388 LIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENA 445
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 186 bits (473), Expect = 5e-51
Identities = 124/481 (25%), Positives = 220/481 (45%), Gaps = 40/481 (8%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL-- 446
V +IG+G + A+I+ A+ G + I E +GG C NVGC+PSK L
Sbjct: 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTII------EGADVIGGCCVNVGCVPSKILIR 68
Query: 447 ------LQTSHSFENVKN--SFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKK 498
Q S+ F+ V+ + G+ ++++ K I N + L
Sbjct: 69 AAQLAHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLL--- 125
Query: 499 NKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVK-FDENLI 557
G+A F N +++ + + + A +IATGS + P + +
Sbjct: 126 ------KGYARFKDG---NTLVVRLHDGGERVLAADRCLIATGSTP-TIPPIPGLMDTPY 175
Query: 558 LSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617
++ AL +P L +IG+ V+ EI + RLGS VTIL S+ L D + +
Sbjct: 176 WTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLFREDPLLGETL 234
Query: 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677
K+G+ ++ NT+ L+ + + + T +KLLI+ GR NT
Sbjct: 235 TACFEKEGIEVLNNTQA---------SLVEHDDNGFVLTTGHGELRAEKLLISTGRHANT 285
Query: 678 NNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737
++LN++ +G+ + + I+VN ET+ P+IYA GD P + A G +++G
Sbjct: 286 HDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG 345
Query: 738 QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMV 797
+++ +A+P VI+T P++A+VG +E I + RA ET G +
Sbjct: 346 GNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFI 405
Query: 798 KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
K++++ + +++G I+ ELI A +AI R + E++A + ++ E +K A
Sbjct: 406 KLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ 465
Query: 858 S 858
+
Sbjct: 466 T 466
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed.
Length = 306
Score = 179 bits (455), Expect = 3e-50
Identities = 96/285 (33%), Positives = 154/285 (54%), Gaps = 15/285 (5%)
Query: 102 IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLD-- 159
+ P A+ + ++IS + G+G+DG+I+ EDV + S+K+ +
Sbjct: 3 LATPIARALAKKLGIDISLLK-GSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQA 61
Query: 160 -------SISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRL 212
+ K + E+ P +R IA + S +N A + NEI+M + DLR
Sbjct: 62 AKTAAPAAAPPKLEGKREKVAP---IRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRK 118
Query: 213 KYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNN--IIYHKYYDIGIAISSS 270
KD K VKL F+ F KA++ ALK++PI A D ++Y ++GIA+ +
Sbjct: 119 SVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTE 178
Query: 271 RGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTP 330
GL+VP+++NA +SI +I K+I+ A++ K+ P+EM GG+FTI+N G GS+ P
Sbjct: 179 AGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVP 238
Query: 331 IINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDG 375
+IN P+ AI GV AI + IV+N +V + + ++ DHR IDG
Sbjct: 239 VINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDG 283
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 182 bits (463), Expect = 4e-49
Identities = 126/415 (30%), Positives = 197/415 (47%), Gaps = 55/415 (13%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
E+ +P LS +++E + W KKEG+ V E L ++ETDK +E+ ++G + KI+ D
Sbjct: 114 EIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173
Query: 65 GSI-VTSNQVIALI---DTDISKL-----------------SSKTEIKNKKDIKNLNT-- 101
G+ + +VIA+ + DI K S K ++ K ++
Sbjct: 174 GAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPE 233
Query: 102 ----------------IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVL-SSIK 144
P A+K+ DNN+ +S I GTG DGRI+K D+ L S K
Sbjct: 234 PKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIK-GTGPDGRIVKADIEDYLASGGK 292
Query: 145 NINEEKQEKYK-PYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEIN 203
K P LD I P +++R A RLLQS+ +
Sbjct: 293 GATAPPSTDSKAPALDYTDI----------PNTQIRKVTASRLLQSKQTIPHYYLTVDTR 342
Query: 204 MQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDI 263
+ ++ LR + E K+ +KA AL++ P N+S + I + +I
Sbjct: 343 VDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNI 402
Query: 264 GIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISN-GGV 322
+A+ + GL VP++++AD ++ I +++ + KA++N L PE+ GGTFT+SN GG
Sbjct: 403 NVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGP 462
Query: 323 FGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFA--LSYDHRIIDG 375
FG IINPPQSAIL V + +KRVI + ++ + LS DHR+IDG
Sbjct: 463 FGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDG 517
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 178 bits (454), Expect = 5e-49
Identities = 102/398 (25%), Positives = 199/398 (50%), Gaps = 49/398 (12%)
Query: 13 ESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQ 72
E I+E LL W KEG+ V + L ++++DK +E+ + G + +I + G IV +
Sbjct: 8 EGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGE 67
Query: 73 V---IALIDTDISKLSSKTEIKNKKDIKNL-----------NTIVMPSAKKILSDNNLEI 118
I + D+ + S + +I +L + P+ + + +++
Sbjct: 68 TLLKIMVEDSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDL 127
Query: 119 SKINNGTGKDGRIIKEDVLKVLSSIKNI------------NEEKQEKYKPYLDSISIKNN 166
+ I GTGKDGR++KEDVLK + + +E+
Sbjct: 128 NDIL-GTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTE-----Q 181
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTF---NEINMQSIIDLRLKYKDKFEKEHN 223
S ++ +P+ + + ++ +A + F EIN+ ++++L+ +++ +
Sbjct: 182 SYEDKTIPLRGFQRAMV----KTMTAAAKVPHFHYVEEINVDALVELKASFQEN-NTDPT 236
Query: 224 VKLGFMSFFVKAVVSALKQYPIINASVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNA 281
VK F+ F +K++ AL +YP++N+ + + I ++IG+A+++ GLVVP ++N
Sbjct: 237 VKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNV 296
Query: 282 DTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILG 341
++S+ +I K+++ + A +NKL PE+++GGT T+SN G G +P++N P+ AI+
Sbjct: 297 QSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIA 356
Query: 342 VHAIKKRV-IVENNNVV---IRPINYFALSYDHRIIDG 375
+ I+K V++ NV I + A DHR++DG
Sbjct: 357 LGRIQKVPRFVDDGNVYPASIMTVTIGA---DHRVLDG 391
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 178 bits (454), Expect = 1e-48
Identities = 133/481 (27%), Positives = 238/481 (49%), Gaps = 47/481 (9%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+++D+I+IG G G + R A K I E GGTC NVGCIP+K +
Sbjct: 1 RHYDLIIIGTGSGNSIPDPRFAD---KRIAI------VEKGTFGGTCLNVGCIPTKMFVY 51
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLER--KNNIIKKNNSGILFLF--KKNKIKFF 504
+ +++ S GI+ + ++ ++ R + I G + + I +
Sbjct: 52 AAEVAQSIGESA-RLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVY 110
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP-----GVKFDENLILS 559
GHA F G ++ E IT I+IA GS+ P GV++ +
Sbjct: 111 DGHARFVGP-----RTLRT--GDGEEITGDQIVIAAGSRPYIPPAIADSGVRYH-----T 158
Query: 560 NKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619
N+ + + +P+ L I+G G I E ++ LG+ VTI+ S+ L +DE+I+ + F
Sbjct: 159 NEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDR-FT 217
Query: 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679
+ K+ +I L + ++ + + V + + ST +T+ D LL+A GR+PN +
Sbjct: 218 EIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGST------VTA--DVLLVATGRVPNGDL 269
Query: 680 LNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739
L+ + G++V+E+ I V++ T+ ++A+GDV L H A E +V ++
Sbjct: 270 LDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPN 329
Query: 740 HSINFN--ALPFVIYTFPEIASVGKTEQYLKK--HNISYNVGIFPFLANSRARILGETSG 795
+P ++T P+IA+VG TEQ ++ H+I+ + + +A A + +T+G
Sbjct: 330 DLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWA--MEDTTG 387
Query: 796 MVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICH-VHPSLSEAMKE 854
K+++D + ++LG HIIGP AS LI + A+ F + ++AR + +HP+L E ++
Sbjct: 388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVEN 447
Query: 855 A 855
A
Sbjct: 448 A 448
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 179 bits (454), Expect = 2e-48
Identities = 132/486 (27%), Positives = 230/486 (47%), Gaps = 40/486 (8%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWKDNEENF--ALGGTCTNVGCIPSK 444
+K FD++VIGAG GG A A L + A +D + F ALGGTC NVGC+P K
Sbjct: 1 SKAFDLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQTHHGPPFYAALGGTCVNVGCVPKK 60
Query: 445 ALLQTSHSFENVKNSF-FEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK-IK 502
++ + + ++ S F + + +V N + ++ KN + N +F + +
Sbjct: 61 LMVTGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT 120
Query: 503 FFHGHAIFTGKIQNNFHEIQI------INKTKETITAKYIIIATGSKARSFPGVKFDENL 556
FF G G +++ + + + + KE + A++I++ATGS + G+ E+
Sbjct: 121 FFLGW----GALEDK-NVVLVRESADPKSAVKERLQAEHILLATGSWPQ-MLGIPGIEHC 174
Query: 557 ILSNKGALEMINVPKKLCIIGAGVIGLEIGSI---WRRLGSEVTILEMSSNFLNTVDEEI 613
I SN+ A + P+++ +G G I +E I ++ G +VT+ ++ L D +
Sbjct: 175 ISSNE-AFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTL 233
Query: 614 AKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEI-ITSIFDKLLIAIG 672
K+ L G+NI+ N + +N ++ S +V E T D +++AIG
Sbjct: 234 RKELTKQLRANGINIMTNENPAKVTLN--------ADGSKHVTFESGKTLDVDVVMMAIG 285
Query: 673 RIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVA 732
R+P T L +DK+G+++ + I V++ TN+PNIYAIGDV ML A EG
Sbjct: 286 RVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFV 345
Query: 733 EHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKK---HNISYNVGIFPFLANSRAR 788
+ + G K + + +++ P I + G E+ K Y P + N
Sbjct: 346 DTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHN---- 401
Query: 789 ILGETSG--MVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHP 846
I G + KI+++ +LG+H++G + E+I I ++ A D VHP
Sbjct: 402 ISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHP 461
Query: 847 SLSEAM 852
+ +E +
Sbjct: 462 TSAEEL 467
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 174 bits (444), Expect = 4e-47
Identities = 122/474 (25%), Positives = 227/474 (47%), Gaps = 31/474 (6%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
+++IG GPGGY A++ AQLG I E LGG C+PSK L+ T+
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGADVTVI-------ERDGLGGAAVLTDCVPSKTLIATA-- 54
Query: 453 FENVKNSFF---EYGINTQN---VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
V+ E GI + ++L + R + ++ I ++ ++ G
Sbjct: 55 --EVRTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAG 112
Query: 507 HAIFTGKIQNNFHEIQII--NKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
H +++ + +ET+ A ++IATG+ R P + D IL+ +
Sbjct: 113 RGRLIDPGLGP-HRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLY 171
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
++ +P+ L ++G+GV G E S + LG +VT++ L D + A+ + ++
Sbjct: 172 DLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR 231
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ ++ ++ ++ + V++ ++ T + S L+A+G +PNT L +++
Sbjct: 232 GMTVLKRSRAESVERTGDGVVVTLTDGRT-----VEGS---HALMAVGSVPNTAGLGLEE 283
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEG-IMVAEHISGQKHS-I 742
G+++ + I V+ T++P IYA GD LA A +G I + H G+ S +
Sbjct: 284 AGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMY-HALGEAVSPL 342
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSD 802
+ ++T PEIA+VG ++ + + + P N RA++ G G VK+
Sbjct: 343 RLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCR 402
Query: 803 MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+ ++G ++ P ASELI +A++ R + +D+A+ V+PSLS ++ EAA
Sbjct: 403 PGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAA 456
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 174 bits (443), Expect = 9e-47
Identities = 138/488 (28%), Positives = 232/488 (47%), Gaps = 47/488 (9%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEE--NFALGGTCTNVGCIPSKALLQ 448
+D++VIG G GG A+ A G K A D K + + + LGGTC NVGC+P K +
Sbjct: 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHY 65
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
++ + YG T + + N K++ N I+ N + +K+++ +G A
Sbjct: 66 AANIGSIFHHDSQMYGWKTSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLA 124
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK---ARSFPGVKFDENLILSNKGALE 565
+ ++ + N +ETITAKYI+IATG + PG K +++
Sbjct: 125 KLKDEHTVSYGD----NSQEETITAKYILIATGGRPSIPEDVPGAK---EYSITSDDIFS 177
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ P K I+GA IGLE LG +VT+ + S L D + ++K + +QG
Sbjct: 178 LSKDPGKTLIVGASYIGLETAGFLNELGFDVTV-AVRSIPLRGFDRQCSEKVVEYMKEQG 236
Query: 626 LNIILNTKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNID 683
+ + I I K + + + +S+ +T +FD +L A GR P+ LN++
Sbjct: 237 --TLFLEGVVPINIEKMDDKIKVLFSDGTT--------ELFDTVLYATGRKPDIKGLNLN 286
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISGQ-KHS 741
IG+ VN++N II ++C TNIPNI+A+GDVV G P L A + GI++A + Q
Sbjct: 287 AIGVHVNKSNKIIAPNDC-TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEF 345
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS------------RARI 789
I++ +P I+T E + G + + ++ + N+ RAR
Sbjct: 346 IDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARK 405
Query: 790 ----LGETSGMVKILSDMKS--DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICH 843
+S + L +KS ++++G H +GP A E+ +A++ A D +
Sbjct: 406 DEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIG 465
Query: 844 VHPSLSEA 851
+HP+ +E
Sbjct: 466 IHPTDAEV 473
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 172 bits (438), Expect = 1e-46
Identities = 135/475 (28%), Positives = 226/475 (47%), Gaps = 47/475 (9%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
MNK + ++IG G G ++ LA+ G++ A I++ N GGTC N+GCIP+K L
Sbjct: 1 MNK-YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ-----SNAMYGGTCINIGCIPTKTL 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKN--NIIKKNNSGILFLFKKNKIKFF 504
+ + +++ F I +N +N L KN N+ N I
Sbjct: 55 VHDAQ-----QHTDFVRAIQRKNEVVNF---LRNKNFHNLADMPN-----------IDVI 95
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKE-TITAKYIIIATGSKA--RSFPGVKFDENLILSNK 561
G A F N H +++ I + I I TG++ PG+ + +
Sbjct: 96 DGQAEFI-----NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDST 149
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
G L + +P L I+G G IG+E S++ GS+VTILE +S FL D +IA +L
Sbjct: 150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATIL 209
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
QG++IILN + I + EN V +E D LLIA GR P T +L+
Sbjct: 210 RDQGVDIILNAHVERIS-HHEN--------QVQVHSEHAQLAVDALLIASGRQPATASLH 260
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI--SGQK 739
+ G+ VNE I+V+ T NI+A+GDV G + + ++ +V + + G++
Sbjct: 261 PENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKR 320
Query: 740 HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKI 799
+ + +P+ ++ P ++ VG TE+ ++ V P A RAR++ +T G++K
Sbjct: 321 STDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKA 380
Query: 800 LSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
+ D K+ ILG ++ + E+I + ++ + HPS+SE++ +
Sbjct: 381 IVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLND 435
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase;
Provisional.
Length = 347
Score = 169 bits (429), Expect = 2e-46
Identities = 98/292 (33%), Positives = 157/292 (53%), Gaps = 6/292 (2%)
Query: 87 KTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNI 146
K +++ KD + + P AK+I ++N+ +I GTG G+I+K+DVL +L
Sbjct: 37 KEDVETYKDTNVVR--ISPLAKRIALEHNIAWQEIQ-GTGHRGKIMKKDVLALLPENIEN 93
Query: 147 NEEKQEKYKPYLDSISIKNNSRLE-ECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQ 205
+ K ++ + E E +PM+ +R IA+R+++S + T E++M
Sbjct: 94 DSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMT 153
Query: 206 SIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASV--DGNNIIYHKYYDI 263
++ LR K + + K AVV L ++P INAS+ DG II H Y ++
Sbjct: 154 EMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNL 213
Query: 264 GIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVF 323
+A+ GL+ P++ NA+ MS++++ + I + D KL P E+ TFTISN G+F
Sbjct: 214 AMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMF 273
Query: 324 GSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDG 375
G PIIN P SAILGV + ++ +V N +VIRPI L+ DHR++DG
Sbjct: 274 GVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDG 325
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 172 bits (438), Expect = 4e-46
Identities = 134/475 (28%), Positives = 233/475 (49%), Gaps = 36/475 (7%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK----DNEENFALGGTCTNVGCIPSKA 445
+FD+ VIGAG GG A+ A G K I E +E +GGTC GC+P K
Sbjct: 25 DFDLFVIGAGSGGVRAARFSANFGAKVG-ICELPFHPISSESIGGVGGTCVIRGCVPKKI 83
Query: 446 LLQTSH---SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
L+ + FE+ KN + + IN + V N +K+L++K + I + N L +K
Sbjct: 84 LVYGATFGGEFEDAKN--YGWEIN-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK 140
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSN 560
+ G G N E+ ++ TK TAK+I+IATGS+A+ + PG + L +++
Sbjct: 141 LYEGEGKIVGP---NEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPG----KELAITS 193
Query: 561 KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHL 620
AL + +PK+ ++G G I +E SIWR +G+ V + L D+E+
Sbjct: 194 DEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN 253
Query: 621 LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL 680
L +G+N+ T + + + + + T+ E + D +L A GR PNT L
Sbjct: 254 LEGRGINLHPRTNLTQLTKTEGGIKV-----ITDHGEEFVA---DVVLFATGRAPNTKRL 305
Query: 681 NIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQK 739
N++ +G+++++ + V++ TNIP+I+AIGDV L A EG A+ + GQ
Sbjct: 306 NLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQP 365
Query: 740 HSINFNALPFVIYTFPEIASVGKTE-QYLKKHN---ISYNVGIFPFLANSRARILGETSG 795
++ + ++ P ++ VG +E + +++ + + P R E +
Sbjct: 366 TKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQ--EKTV 423
Query: 796 MVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
M K++ D ++D++LG + GP A E++ +A++ A+ +HPS +E
Sbjct: 424 M-KLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 173 bits (440), Expect = 4e-46
Identities = 113/416 (27%), Positives = 196/416 (47%), Gaps = 44/416 (10%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ EV +P + I + T++ K G+ V +++LI +E+DK +E+PAP G++ + +
Sbjct: 116 VQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKV 174
Query: 63 TDGSIVTSNQVIALIDTDIS------------------------------KLSSKTEIKN 92
G V + +I + S ++
Sbjct: 175 KVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQ 234
Query: 93 KKDIKNLNTI--VMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK-VLSSIKNINEE 149
+ +N + P+ +++ + +++S + GTG GRI++EDV + V
Sbjct: 235 QAGTQNPAKVDHAAPAVRRLAREFGVDLSAVK-GTGIKGRILREDVQRFVKEPSVRAQAA 293
Query: 150 KQEKYKPYLDSISIKNNS-----RLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINM 204
++ N +EE V MSR+R L ++ +T F++ ++
Sbjct: 294 AASAAGGAPGALPWPNVDFSKFGEVEE-VDMSRIRKISGANLTRNWTMIPHVTHFDKADI 352
Query: 205 QSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYD 262
+ R + EKE VKL + +KAV +ALK++P NAS+D G +I KY +
Sbjct: 353 TEMEAFRKQQNAAVEKE-GVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVN 411
Query: 263 IGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGV 322
IG+A+ + GL+VP++++ D I ++ ++++ KA+D KL P+EM G FTIS+ G
Sbjct: 412 IGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGG 471
Query: 323 FGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
G TPI+N P+ AILGV + R + +LSYDHR+IDG +A
Sbjct: 472 IGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGADA 527
Score = 46.8 bits (111), Expect = 4e-05
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E+K+P + ++ E ++ K G+ V ++LI +E+DK +E+P+ GII +I +
Sbjct: 1 TEIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVK 59
Query: 64 DGSIVTSNQVIALID 78
G + VIA ++
Sbjct: 60 VGDTLPVGGVIATLE 74
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 165 bits (418), Expect = 4e-43
Identities = 136/533 (25%), Positives = 231/533 (43%), Gaps = 97/533 (18%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
+D+IVIG G GG A+ R A+ K A + E LGGTC NVGC+P K +
Sbjct: 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALV-------EKDYLGGTCVNVGCVPKKIMF 98
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+ + ++NS YG +TQ NL ++ER++ I++ N KK+ +++F G
Sbjct: 99 NAASIHDILENSR-HYGFDTQFS-FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGK 156
Query: 508 AIFTG-------KIQNNFHEIQIINKTKET--------------ITAKYIIIATGSKARS 546
K+ E + + T I K I+IA G+K
Sbjct: 157 GSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKP-I 215
Query: 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606
FP VK E I S+ I K++ I G+G I +E+ ++ RLG+E I + L
Sbjct: 216 FPDVKGKEFTISSD--DFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273
Query: 607 NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666
DE I + + + K +NII + + +I+ KE L Y + + FD
Sbjct: 274 RKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEH------FDY 327
Query: 667 LLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV---------RG 717
++ +GR PNT +LN+ + +K +I V+DN T++ +IYA+GD
Sbjct: 328 VIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDL 386
Query: 718 PMLAHKAEEEGIMVAEHISGQ--------------------------KHSINFNALPFVI 751
+L EE + E+ SG+ + N+ +P VI
Sbjct: 387 NLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVI 446
Query: 752 YTFPEIASVGKTEQ-----YLKKH---------NISYNVGIFPFLANSRARILGETSGMV 797
++ P I ++G +EQ Y K++ N+ + ++ + + +
Sbjct: 447 FSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFF--SVYDMDPAQKEKTY------L 498
Query: 798 KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
K++ K + I G+HI+G A E++ +A++ A+ D +HP+ +E
Sbjct: 499 KLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAE 551
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 145 bits (367), Expect = 8e-41
Identities = 59/109 (54%), Positives = 74/109 (67%)
Query: 748 PFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDE 807
P V++T PEIASVG TE+ KK VG FPF AN RA GET G VK+++D ++
Sbjct: 2 PSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGR 61
Query: 808 ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
ILG HI+GP A ELI EA +AI+ A+ ED+A H HP+LSEA+ EAA
Sbjct: 62 ILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEAA 110
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 148 bits (374), Expect = 2e-37
Identities = 135/504 (26%), Positives = 233/504 (46%), Gaps = 70/504 (13%)
Query: 390 NFDVIVIGAGPGG---------YVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGC 440
+FD+ IGAG GG + AS + +L F T D +GGTC GC
Sbjct: 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLG------GVGGTCVLRGC 132
Query: 441 IPSKALL---QTSHSFENVKNSFFEYGINTQ--------NVTLNLQKMLERKNNIIKKNN 489
+P K L+ + SH FE + ++Y + N LQ++ NI+ N
Sbjct: 133 VPKKLLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNIL--KN 190
Query: 490 SGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549
+G+ + + KI + H + + K TA+ I+IA G + P
Sbjct: 191 AGVTLIEGRGKIV--------------DPHTVDVDGKL---YTARNILIAVGGRP-FIPD 232
Query: 550 VKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV 609
+ E+ I S+ AL++ + P+K+ I+G G I LE I+ L S+V + L
Sbjct: 233 IPGIEHAIDSD-AALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF 291
Query: 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT-SIFDKLL 668
DEE+ ++ +G I +T+ I K + S ++KT T F ++
Sbjct: 292 DEEVRDFVAEQMSLRG--IEFHTEESPQAIIKSA------DGSLSLKTNKGTVEGFSHVM 343
Query: 669 IAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEG 728
A GR PNT NL ++++G+K+++N I V++ T++P+I+A+GDV L A EG
Sbjct: 344 FATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEG 403
Query: 729 IMVAEHISGQKHS-INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRA 787
+A+ + G + + ++ A+P +++ P I VG TE+ + +V F AN R
Sbjct: 404 GALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDV----FTANFRP 459
Query: 788 RILGETSGM-----VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARIC 842
+ SG+ +K++ K++++LG+H+ G A E+I +A++ + D
Sbjct: 460 -LKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV 518
Query: 843 HVHPSLSE---AMKEAAMSIENRS 863
+HP+ +E M+ I S
Sbjct: 519 GIHPTAAEEFVTMRTPTRKIRKDS 542
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 107 bits (270), Expect = 8e-25
Identities = 90/336 (26%), Positives = 142/336 (42%), Gaps = 58/336 (17%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSNKGA 563
HE+ +N ++T+ + Y+I++ G+ + G+ D L N
Sbjct: 65 HEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLED 124
Query: 564 LEMI------NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKK 616
+ I N + + IIG G IG+E+ R G VT++ S LN DEE+ +
Sbjct: 125 TDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQI 184
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
L K +N+ LN ++ I E + +++ D +++A G PN
Sbjct: 185 VEEELKKHEINLRLNEEV--DSIEGEERVKVFTSGGVYQ--------ADMVILATGIKPN 234
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDV-------VRGPM---LAHKAEE 726
+ GLK+ E I VN+ +T++PNIYA GDV + P LA A +
Sbjct: 235 SEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANK 292
Query: 727 EGIMVAEHISGQKHSINF------NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP 780
G + E+I+G + I F N F T IAS G TE KK NI Y
Sbjct: 293 MGRIAGENIAG--NDIEFKGVLGTNITKFFDLT---IASTGVTENEAKKLNIDYKTVFVK 347
Query: 781 FLANSRARIL-GETSGMVKILSDMKSDEILGIHIIG 815
A + A G + +K++ + + ILG +G
Sbjct: 348 --AKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVG 381
Score = 30.9 bits (70), Expect = 3.1
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG---RIPNTNN 679
K+G+++ N ++ I++N E + N TN E +D L+++ G +PN
Sbjct: 56 KRGIDVKTNHEV--IEVNDERQTVVVRNNKTN---ETYEESYDYLILSPGASPIVPNIEG 110
Query: 680 LNIDKI 685
+N+D +
Sbjct: 111 INLDIV 116
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 95.5 bits (239), Expect = 6e-24
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E+K+P L ES++E T++ W KEG+ V + L ++ETDK +E+ AP G++ KI++
Sbjct: 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60
Query: 64 DGSIVTSNQVIALI 77
+G V QVIA+I
Sbjct: 61 EGDTVPVGQVIAVI 74
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 98.5 bits (246), Expect = 2e-22
Identities = 80/332 (24%), Positives = 128/332 (38%), Gaps = 61/332 (18%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+DVI+IG GP G A+I A+ G K I E GG L +
Sbjct: 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLIL------EGGEPGG------------QLTKT 45
Query: 451 HSFENVKNSFFEYGINTQNVTLNL-QKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI 509
EN G + L ++M E F ++
Sbjct: 46 TDVENYP------GFPGGILGPELMEQMKE------------QAEKFG---VEIVEDEVE 84
Query: 510 FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKGALEMI 567
F + K T AK +IIATG+ AR PG + E +S +
Sbjct: 85 KVELEGGPF----KVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGF 140
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
K + +IG G +E ++ +VT++ F +E + ++ +
Sbjct: 141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF--RAEEILVERLK---KNVKIE 195
Query: 628 IILNTKIHDIKINK-ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
++ NT + +I + E V++ NVK E D + IAIG +PNT + K
Sbjct: 196 VLTNTVVKEILGDDVEGVVLK------NVKGEEKELPVDGVFIAIGHLPNTE---LLKGL 246
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
++EN +I+V++ ET++P I+A GDV
Sbjct: 247 GVLDENGYIVVDEEMETSVPGIFAAGDVADKN 278
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 97.7 bits (243), Expect = 2e-21
Identities = 69/290 (23%), Positives = 114/290 (39%), Gaps = 35/290 (12%)
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDE 554
+ I G + + +N + I Y+++ATG++ R P E
Sbjct: 62 FNRATGIDVRTGTEVTSIDPENKVVLLD-----DGEIEYDYLVLATGARPRPPPIS-DWE 115
Query: 555 NLI-LSNKGALEMIN----VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV 609
++ L + E + PK + ++GAG IGLE + G +VT++E + +
Sbjct: 116 GVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175
Query: 610 -DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKL 667
D E+A++ LL K G+ ++L TK+ ++ + V I D +
Sbjct: 176 LDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTL------VVERVVGIDGEEIKADLV 229
Query: 668 LIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDVVRGPM------- 719
+I G PN L D + ++V++ T P++YA GDV P
Sbjct: 230 IIGPGERPNV-VLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGG 288
Query: 720 ---LAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFP--EIASVGKTE 764
L A G + AE+I+G L VI AS G TE
Sbjct: 289 RIALWAIAVAAGRIAAENIAGALR--IPGLLGTVISDVGDLCAASTGLTE 336
Score = 31.8 bits (72), Expect = 1.7
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 28/124 (22%)
Query: 575 IIGAGVIGLEIGSIWRRLGS--EVTILEMSSNF------LNTV------DEEIAKKAFHL 620
I+G G GL + RRL E+T++ + L+ E +
Sbjct: 3 IVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRF 62
Query: 621 LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG---RIPNT 677
G+++ T++ I+ EN ++ + +D L++A G R P
Sbjct: 63 NRATGIDVRTGTEV--TSIDPENKVVLLDDGEI---------EYDYLVLATGARPRPPPI 111
Query: 678 NNLN 681
++
Sbjct: 112 SDWE 115
Score = 29.9 bits (67), Expect = 7.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFK 415
++++G G G A+ L +L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLA 23
Score = 29.5 bits (66), Expect = 9.4
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 29/124 (23%)
Query: 327 LSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFA---------LSYDHRII---- 373
+ I + + V V I+ + YD+ ++
Sbjct: 46 VGGGIASLEDLRYPPRFNRATGIDVRTGTEVTS-IDPENKVVLLDDGEIEYDYLVLATGA 104
Query: 374 -------DGREAVLSLMSFIMNKNF--------DVIVIGAGPGGYVASIRLAQLGFKTAC 418
E V++L + DV+V+GAGP G A+ A+ G K
Sbjct: 105 RPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTL 164
Query: 419 IDEW 422
I+
Sbjct: 165 IEAA 168
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 91.9 bits (229), Expect = 3e-20
Identities = 85/352 (24%), Positives = 139/352 (39%), Gaps = 71/352 (20%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DVI+IGAGP G A+I A+ K I E GG L T+
Sbjct: 1 DVIIIGAGPAGLTAAIYAARANLKPLLI-------EGGEPGG------------QLTTTT 41
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
EN F GI+ + +++ + F + + I
Sbjct: 42 EVENYPG--FPEGISGPELMEKMKEQAVK---------------FG---AEIIYEEVIKV 81
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG--ALEMINV 569
K F + + TAK +IIATG+ AR G+ ++ +G +
Sbjct: 82 DKSGRPFK---VYTGDGKEYTAKAVIIATGASARKL-GIPGEDEFW--GRGVSYCATCDG 135
Query: 570 P----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNK 623
P K++ ++G G +E R+ +VT++ F A+K L
Sbjct: 136 PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------AEKILLDRLKKN 188
Query: 624 QGLNIILNTKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
+ + N+ + +I + E V I N T + E+ D + IAIG PNT L
Sbjct: 189 PKIEFLWNSTVKEIVGDNKVEGVKI--KNTVTGEEEELEV---DGVFIAIGHEPNTELL- 242
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVA 732
K L+++EN +I+ ++ T++P ++A GDV +G A A +G + A
Sbjct: 243 --KGLLELDENGYIVTDEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAA 292
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 93.3 bits (232), Expect = 7e-20
Identities = 82/286 (28%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 518 FHEIQIIN-----------KTKETITAKY--IIIATGSKARSFPGVKFDENLILSNKGAL 564
+HE+ IN KT E Y +I++ G+ A S G + D L N
Sbjct: 78 YHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGFESDITFTLRNLEDT 136
Query: 565 EMI------NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF 618
+ I N K ++GAG I LE+ G T++ S +D ++ +
Sbjct: 137 DAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPIL 196
Query: 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678
L+K+ + LN +I I N + + KS V+ +D ++ +G PN+
Sbjct: 197 DELDKREIPYRLNEEIDAINGN----EVTF--KSGKVEH------YDMIIEGVGTHPNSK 244
Query: 679 NLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPM----------LAHKAEEEG 728
I+ +K+++ FI VND ETN+PNIYAIGD++ LA A
Sbjct: 245 F--IESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAA 302
Query: 729 IMVAEHISGQKHSINF------NALPFVIYTFPEIASVGKTEQYLK 768
+VAE I+G +I F N + F YTF ASVG LK
Sbjct: 303 SIVAEQIAG-NDTIEFKGFLGNNIVKFFDYTF---ASVGVKPNELK 344
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 90.7 bits (226), Expect = 2e-18
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 235 AVVSALKQYPIINAS---VDGN-NIIYHKYYDIGIAI-----SSSRGLVVPILRNADTMS 285
A+V ALK +P +N VDG ++ + ++G+AI SR LVVP ++ A+TM
Sbjct: 179 ALVQALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMD 238
Query: 286 IADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAI 345
A + + +A+D KL ++ G T +++N G G++ S P + Q AI+GV A+
Sbjct: 239 FAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAM 298
Query: 346 K---------KRVIVENNNVVIRPINYFALSYDHRIIDGRE 377
+ + + E I + +YDHRII G E
Sbjct: 299 EYPAEFQGASEERLAELG---ISKVMTLTSTYDHRIIQGAE 336
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 88.6 bits (220), Expect = 2e-18
Identities = 95/349 (27%), Positives = 149/349 (42%), Gaps = 49/349 (14%)
Query: 496 FKKNKIKFFHGHAIFTGKIQNNFHEIQIIN-KTKETITAKY--IIIATGSKA--RSFPGV 550
F K+ I H + +N I + N KT Y ++IATG++ +
Sbjct: 66 FIKSGIDVKTEHEVVKVDAKNK--TITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNI 123
Query: 551 K---------FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
++ L L E I K + IIGAG IGLE + LG V I+++
Sbjct: 124 NLENVYTLKSMEDGLALKELLKDEEI---KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180
Query: 602 SSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEII 660
L + D+EI L + G+ + LN + + I ++ V ++K + +++
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSL-IGEDKVEGVVTDKG-EYEADVV 238
Query: 661 TSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGD------- 713
++A G PNT L GLK +N IIV++ ET+I NIYA GD
Sbjct: 239 -------IVATGVKPNTEFLEDT--GLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNI 289
Query: 714 VVRGPM---LAHKAEEEGIMVAEHISGQ----KHSINFNALPFVIYTFPEIASVGKTEQY 766
V + LA A + G MV E+++G+ K ++ + + E A G TE+
Sbjct: 290 VSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDL---EAARTGLTEEE 346
Query: 767 LKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIG 815
KK I Y +F N G+ VK++ + + ILG IIG
Sbjct: 347 AKKLGIDYKT-VFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIG 394
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 74.2 bits (183), Expect = 3e-16
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
++ ++G G IGLE S +LGS+VT++E L DEEIAK L K G+ ++LN
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 632 TKIHDIKINKENVLINYSNKS 652
T + +I+ N + V++
Sbjct: 61 TTVEEIEGNGDGVVVKLKTGD 81
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine
residue binds biotin in one group and lipoic acid in
the other. Note that the HMM does not currently
recognise the Glycine cleavage system H proteins.
Length = 73
Score = 66.1 bits (162), Expect = 1e-13
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E+K P + ES+ E T W K G+ V + L ++E K+ +E+PAP G++ +I++
Sbjct: 1 TEIKSPMIGESVKEGTA-EWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59
Query: 64 DGSIVTSNQVIALI 77
+G V +A I
Sbjct: 60 EGDTVEVGDPLAKI 73
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 72.4 bits (178), Expect = 5e-13
Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 88/347 (25%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+DV+V+G GP G A+I A+ G +TA + E +GG ++ +
Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--------RIGGQ------------VKDT 252
Query: 451 HSFENVKNSFFEYGINTQNVT-----LNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
EN+ I+ T NL++ + ++ I N + ++ +
Sbjct: 253 VGIENL--------ISVPYTTGSQLAANLEEHI-KQYPIDLMENQRAKKIETEDGL---- 299
Query: 506 GHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGVKFDENLILSNKGA 563
I + ++ E + AK +I+ATG++ R PG K E + KG
Sbjct: 300 ---------------IVVTLESGEVLKAKSVIVATGARWRKLGVPGEK--EYI---GKG- 338
Query: 564 LEMINVP---------KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV--DEE 612
+ P K + +IG G G+E + VT+LE F + + D+
Sbjct: 339 --VAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLE----FADELKADKV 392
Query: 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAI 671
+ K L N ++I+ + + +I + + V I Y ++++ E D + + I
Sbjct: 393 LQDKLKSLPN---VDILTSAQTTEIVGDGDKVTGIRYQDRNSG---EEKQLDLDGVFVQI 446
Query: 672 GRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
G +PNT L K +++N I++++ T++P I+A GDV P
Sbjct: 447 GLVPNTEWL---KDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVP 490
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 70.0 bits (172), Expect = 3e-12
Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 39/263 (14%)
Query: 496 FKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF----PGVK 551
+++N I + G + IQ + + T++ +IIATGS F PG
Sbjct: 69 YEENGITLYTGEKV----IQIDRANKVVTTDAGRTVSYDKLIIATGSYP--FILPIPGSD 122
Query: 552 FDENLILSN-KGALEMIN---VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
+ M++ KK +IG G++GLE + LG EVT++ ++ +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM- 181
Query: 608 TVDEEIAKKAFHLL----NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663
+ ++ + A LL G+ ++L K I +K V+ T I
Sbjct: 182 --ERQLDRTAGRLLRRKLEDLGIKVLLE---------KNTEEIVGEDKVEGVRFADGTEI 230
Query: 664 F-DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV--RG--P 718
D +++A+G PN + GL VN I+VND +T+ P+IYA+G+ RG
Sbjct: 231 PADLVVMAVGIRPNDEL--AKEAGLAVNRG--IVVNDYMQTSDPDIYAVGECAEHRGKVY 286
Query: 719 MLAHKAEEEGIMVAEHISGQKHS 741
L E+ ++A+H+ G +
Sbjct: 287 GLVAPLYEQAKVLADHLCGGEAE 309
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 68.9 bits (169), Expect = 8e-12
Identities = 84/417 (20%), Positives = 147/417 (35%), Gaps = 126/417 (30%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP----SKALLQ 448
V VIGAGP G A+ LA+ G + E ++N GG N+ IP L+Q
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHP-VTVFEREEN-----AGGVVKNI--IPQFRIPAELIQ 593
Query: 449 TSHSFENVKNS--FFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
H E VK FE+G + L +++ L +
Sbjct: 594 --HDIEFVKAHGVKFEFGCS---PDLTVEQ------------------LKNEG------- 623
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLIL-------S 559
Y+++A G+ ++ ++
Sbjct: 624 --------------------------YDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEE 657
Query: 560 NKGALEMINVPKKLCIIGAG------------VIGLEIGSI-WRRLGSEVTILEMSSNFL 606
K + + K + ++G G V G+E ++ +RR T EM +
Sbjct: 658 YKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR-----TKQEMPA--- 709
Query: 607 NTVDEEIAKKAFH-------LLNKQGLNIILNTKIHDIKINKENVLINY--SNKSTNVKT 657
E ++A LLN + + + + + L S + V+T
Sbjct: 710 ---WREEYEEALEDGVEFKELLNPESFD--ADGTL----TCRVMKLGEPDESGRRRPVET 760
Query: 658 -EIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR 716
E +T D ++ AIG +T L G+ +++ + +V+ N ET++ N+Y IGDV R
Sbjct: 761 GETVTLEADTVITAIGEQVDTELL--KANGIPLDKKGWPVVDANGETSLTNVYMIGDVQR 818
Query: 717 GPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNIS 773
GP A + A+ I ++ + + +V E Y +K +S
Sbjct: 819 GPSTIVAAIADARRAADAILSREGIRS----HQNDKYWN---NVEPAEIYQRKGILS 868
Score = 33.8 bits (78), Expect = 0.51
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV----------DEEIAKKAFHL 620
KK+ +IGAG GL R G VT+ E N V E I
Sbjct: 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHD-IEF 598
Query: 621 LNKQGLNIILN 631
+ G+
Sbjct: 599 VKAHGVKFEFG 609
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 67.2 bits (165), Expect = 2e-11
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA IE+ +P LS ++ E TL W KKEG+ V + + +IETDK +E+ A +G + KI
Sbjct: 1 MA-IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKI 59
Query: 61 IITDGSI-VTSNQVIALIDTD 80
++ +G+ V N IA++ +
Sbjct: 60 LVPEGTEGVKVNTPIAVLLEE 80
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 65.7 bits (161), Expect = 3e-11
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
+ +PK S++E + W +EG+ V + + L+D+ETDK+ E+ AP G + + + +
Sbjct: 4 PITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQE 63
Query: 65 GSIVTSNQVIALI 77
G + ++A++
Sbjct: 64 GETLPVGALLAVV 76
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 64.6 bits (158), Expect = 8e-11
Identities = 45/194 (23%), Positives = 95/194 (48%), Gaps = 23/194 (11%)
Query: 537 IIATGSKARSF-PGVKFDENLILSN-----KGALEMINVPKKLCIIGAGVIGLEIGSIWR 590
++ATG+ A F P + E ++ N + A + +++ ++G G+IG E+
Sbjct: 104 VLATGASA--FVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC 161
Query: 591 RLGSEVTILEMSSNFL-NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYS 649
R G VT+++ +++ L + + E++ + H L + G++++L +++ ++ +
Sbjct: 162 RAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLD 221
Query: 650 NKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIY 709
+ + D ++ A G PNT + GL VN I+V+ +T+ P+IY
Sbjct: 222 SGRS--------IEVDAVIAAAGLRPNTALAR--RAGLAVNRG--IVVDSYLQTSAPDIY 269
Query: 710 AIGDV--VRGPMLA 721
A+GD + G +L
Sbjct: 270 ALGDCAEINGQVLP 283
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent
carboxylases/decarboxylases, the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine
cleavage system (GCS). These domains transport CO2,
acyl, or methylamine, respectively, between components
of the complex/protein via a biotinyl or lipoyl group,
which is covalently attached to a highly conserved
lysine residue.
Length = 73
Score = 57.8 bits (140), Expect = 1e-10
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
+ IP L++ + + T++ W KK G+ V + + L +IE K ++ AP+ G + K+++ +
Sbjct: 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60
Query: 65 GSIVTSNQ 72
G+ V +
Sbjct: 61 GTKVEGDT 68
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 63.0 bits (153), Expect = 2e-10
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 536 IIIATGSKARSFPGV-KFDENLI----LSNKGAL-EMINVPKKLCIIGAGVIGLEIGSIW 589
+ IATG+ AR P + E + L E++ + + I+GAG IGLE+ +
Sbjct: 104 LFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASA 163
Query: 590 RRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK---QGLNIILNTKIHDIKINKENVLI 646
+ +VT++E+++ + ++ +LL + G+ I+LN I + ++ L
Sbjct: 164 TQRRCKVTVIELAATVMGRNAPPPVQR--YLLQRHQQAGVRILLNNAIEHVVDGEKVELT 221
Query: 647 NYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN--ENNFIIVNDNCETN 704
S + T D ++ IG N D++ + N N I++++ C T
Sbjct: 222 LQSGE---------TLQADVVIYGIGISAN------DQLAREANLDTANGIVIDEACRTC 266
Query: 705 IPNIYAIGDV 714
P I+A GDV
Sbjct: 267 DPAIFAGGDV 276
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 63.7 bits (155), Expect = 3e-10
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 39/253 (15%)
Query: 505 HGHAIFTGK--IQNNFHEIQIINKTKETITAKYIIIATGS-------KARSFPGVKF--- 552
HG ++TG+ IQ + + Q+I T++ +I+ATGS GV
Sbjct: 67 HGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRT 126
Query: 553 --DENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NTV 609
D + I++ M KK +IG G++GLE + LG +V+++ + + +
Sbjct: 127 IEDLDAIMA------MAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQL 180
Query: 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLL 668
D+ + L ++GL +L K+ V I + K+ ++ + +S+ D ++
Sbjct: 181 DQTAGRLLQRELEQKGLTFLLE---------KDTVEIVGATKADRIRFKDGSSLEADLIV 231
Query: 669 IAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV----RGPMLAHKA 724
+A G PN L + G+KVN IIVND+ +T+ P+IYA+G+ R L
Sbjct: 232 MAAGIRPNDE-LAVSA-GIKVNRG--IIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPL 287
Query: 725 EEEGIMVAEHISG 737
E+ ++A+HI G
Sbjct: 288 YEQAKVLADHICG 300
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 62.8 bits (153), Expect = 4e-10
Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 73/359 (20%)
Query: 373 IDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG 432
ID A F +DV+V+G GP G A+I A+ G +T + E F G
Sbjct: 194 IDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV------AERF--G 245
Query: 433 GTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVT-LNLQKMLERKNNIIKKNNSG 491
G +L T EN I+ L LE +K+ +
Sbjct: 246 GQ-----------VLDTM-GIENF--------ISVPETEGPKLAAALEAH---VKQYDVD 282
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF--PG 549
++ L + +K++ ++ E+++ N + A+ +I+ATG++ R+ PG
Sbjct: 283 VMNLQRASKLE--------PAAVEGGLIEVELANGA--VLKARTVILATGARWRNMNVPG 332
Query: 550 VKFDENLILSNKGALEMINVP---------KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
DE NKG + P K++ +IG G G+E + VT+LE
Sbjct: 333 E--DE---YRNKG---VAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 384
Query: 601 MSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEI 659
+ D + K L N + II N + ++K + + V + Y ++ + E
Sbjct: 385 FAPEL--KADAVLQDKLRSLPN---VTIITNAQTTEVKGDGDKVTGLEYRDRVSG---EE 436
Query: 660 ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
+ + + IG +PNT L K +++N IIV+ ETN+P ++A GD P
Sbjct: 437 HHLELEGVFVQIGLLPNTEWL---KGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 58.8 bits (143), Expect = 4e-09
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 50/246 (20%)
Query: 529 ETITAKY--IIIATGS-KARSF--PGVKFDENL------------ILSNK-GALEMINVP 570
E + KY ++IATG+ K+R PG E+L I + K G L VP
Sbjct: 113 EELVKKYDAVLIATGTWKSRKLGIPG----EDLPGVYSALEYLFRIRAAKLGYLPWEKVP 168
Query: 571 ----KKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFLNTVDEEIA-KKAFHLLNKQ 624
KK+ ++GAG+ ++ LG+E V + + T++E A K L +
Sbjct: 169 PVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLA-----YRRTINEAPAGKYEIERLIAR 223
Query: 625 G---------LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-----FDKLLIA 670
G + II ++ +++ K + + ++S + I D ++ A
Sbjct: 224 GVEFLELVTPVRIIGEGRVEGVELAK--MRLGEPDESGRPRPVPIPGSEFVLEADTVVFA 281
Query: 671 IGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIM 730
IG IP T + +G+++N I+V++ T+ ++A GDVV GP KA + G+
Sbjct: 282 IGEIP-TPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLR 340
Query: 731 VAEHIS 736
A+ I
Sbjct: 341 AAQSIH 346
>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain. This family represents a
small domain of the E2 subunit of 2-oxo-acid
dehydrogenases responsible for the binding of the E3
subunit.
Length = 39
Score = 52.0 bits (126), Expect = 5e-09
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 101 TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK 138
P+A+K+ ++ +++S++ GTG GRI KEDVL
Sbjct: 3 VFASPAARKLAAEKGIDLSQVK-GTGPGGRITKEDVLA 39
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 58.6 bits (142), Expect = 7e-09
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 36/209 (17%)
Query: 574 CIIGAGVIGLEIGS--------IWRRLGSE------VTILEMSSNFLNTVDEEIAKKAFH 619
++G G G+E + R L E VT+LE S L + D+ + K
Sbjct: 177 VVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQR 236
Query: 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679
L + G++I T + ++ +KE VL + T + ++ S +G P T
Sbjct: 237 RLRRLGVDIRTKTAVKEVL-DKEVVLKDGEVIPTGL---VVWS------TGVGPGPLTKQ 286
Query: 680 LNIDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDV-----VRGPMLAHKAEEEGIMVAE 733
L +DK I V+D+ IPN++A+GD P LA A ++G+ +A+
Sbjct: 287 LKVDK-----TSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAK 341
Query: 734 HISGQKHSINFNALPFVIYTFPEIASVGK 762
+ + + PFV + +A +G
Sbjct: 342 EFNNEL-KGKPMSKPFVYRSLGSLAYLGN 369
Score = 30.9 bits (70), Expect = 3.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL 680
L ++D+ ++ V +KS N + +DKL++A G PNT N+
Sbjct: 80 LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNI 130
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 57.3 bits (139), Expect = 2e-08
Identities = 54/284 (19%), Positives = 99/284 (34%), Gaps = 53/284 (18%)
Query: 517 NFHEIQIINKTKETITAKYIIIATGSKARSF--PGVK-----FDE--------NLILSNK 561
+ ++ I+ Y+++A GS+ F PG +L
Sbjct: 84 DRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAF 143
Query: 562 GALEMINVPKKLC---IIGAGVIGLE-----------IGSIWRRLGSE--VTILEMSSNF 605
+ L I+G G G+E + +R SE V ++E
Sbjct: 144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203
Query: 606 LNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665
L +++K A L K G+ ++L T + ++ + V + + D
Sbjct: 204 LPMFPPKLSKYAERALEKLGVEVLLGTPV--TEVTPDGV--TLKDGEEEIPA-------D 252
Query: 666 KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE-TNIPNIYAIGDVVRG------P 718
++ A G + L D GL+ + ++VN + P+I+A GD P
Sbjct: 253 TVVWAAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVP 310
Query: 719 MLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGK 762
A A ++G A++I + PF +AS+G
Sbjct: 311 PTAQAAHQQGEYAAKNI--KARLKGKPLKPFKYKDKGTLASLGD 352
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 55.3 bits (133), Expect = 9e-08
Identities = 58/268 (21%), Positives = 102/268 (38%), Gaps = 45/268 (16%)
Query: 497 KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKY--IIIATGS---KARSFPGVK 551
KK + F + GK T E + ++Y + I TG+ K + PG +
Sbjct: 194 KKLGVTFRMNFLV--GK-----------TATLEELFSQYDAVFIGTGAGLPKLMNIPGEE 240
Query: 552 FDE-----------NLILSNKGALE--MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
NL+ + + + K + +IG G ++ RLG+EV
Sbjct: 241 LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHC 300
Query: 599 LEMSSNFLNTVDEEIAKKA------FHLLNKQGLNIILNTK--IHDIKINKENVLINYSN 650
L + T E A FH L Q + II + + + +K K + +
Sbjct: 301 LYRRTREDMTARVEEIAHAEEEGVKFHFLC-QPVEIIGDEEGNVRAVKFRKMDCQEQIDS 359
Query: 651 KSTN---VKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707
D +++AIG N + + LK +E I+V+++ T+IP
Sbjct: 360 GERRFLPCGDAECKLEADAVIVAIGNGSNP--IMAETTRLKTSERGTIVVDEDQRTSIPG 417
Query: 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
++A GD++ G +A +G A+ I
Sbjct: 418 VFAGGDIILGAATVIRAMGQGKRAAKSI 445
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 54.0 bits (130), Expect = 3e-07
Identities = 83/401 (20%), Positives = 149/401 (37%), Gaps = 92/401 (22%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
V VIGAGP G A LA+ G ++ +E GG N+ IP
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEK----KEK--PGGVVKNI--IP---------- 581
Query: 453 FENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTG 512
E+ I+ +++ +++ L K + ++F +G
Sbjct: 582 ---------EFRISAESIQKDIE-------------------LVKFHGVEFKYG------ 607
Query: 513 KIQNNFHEIQIINKTKETITAKYIIIATGSKA-----------RSFPGVKFDENLILSNK 561
+ ++ N+ KY+I+A G+ R ++F K
Sbjct: 608 -CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRA----FK 657
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLNTVDEEIAKKAFH 619
+ + K + ++G G ++ R+ +VT++ + E ++A
Sbjct: 658 EGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE 717
Query: 620 --LLNKQGLNIILNTKIHDIKINKENVLI---NYSNKSTNVKT-EIITSIFDKLLIAIGR 673
+ K+ L+ D + E + + + S + V T E + D ++ A+G
Sbjct: 718 DGVDFKELLSPE---SFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGE 774
Query: 674 IPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVA 732
+T+ L K G+ ++E + +VN ETNI N++ IGD RGP +A +G A
Sbjct: 775 QVDTDLLQ--KNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAA 832
Query: 733 EHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNIS 773
I + +N V FP V E Y KK +
Sbjct: 833 NAIL-SREGLN----SDVDKVFPINEEVRLAEVYQKKGILV 868
Score = 33.2 bits (76), Expect = 0.82
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVD---------EEIAKKAFHLLN 622
K+ +IGAG GL G R G VT+ E V E +K L+
Sbjct: 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVK 598
Query: 623 KQGLNI 628
G+
Sbjct: 599 FHGVEF 604
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 52.9 bits (127), Expect = 5e-07
Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 66/338 (19%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M + +D+I+IG GP G A I + T I+ KD+ GG
Sbjct: 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE--KDD-----FGG------------- 40
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
Q + + E V GI +Q+M ++ + +KF
Sbjct: 41 -QITITSEVVNYP----GILNTTGPELMQEMRQQA---------------QDFGVKFLQA 80
Query: 507 HAI---FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS--FPG-VKFDENLILSN 560
+ F G I+ I + ++IATG+ R FPG +F +
Sbjct: 81 EVLDVDFDGDIKT-------IKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYC 133
Query: 561 KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHL 620
+ +IG G E R S+VT++ +F T + IA+K
Sbjct: 134 ATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF--TCAKLIAEKV--- 188
Query: 621 LNKQGLNIILNTKIH----DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
N + + NT++ D + + N + + T K F + + +G P+
Sbjct: 189 KNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFG-VFVFVGYAPS 247
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDV 714
+ + K +++++ +I N++ ETN+P +YA GD+
Sbjct: 248 SE---LFKGVVELDKRGYIPTNEDMETNVPGVYAAGDL 282
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 52.8 bits (127), Expect = 6e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+DV+VIGAG G A+ LA+ G K ++
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLE 33
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 51.6 bits (124), Expect = 7e-07
Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 22/163 (13%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+DV+V+GAGP G A+ RLA G + ++ +++F C G + +AL +
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLE-----KKSFPRYKPCG--GALSPRALEELD 53
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKN-----NIIKKNNSGILFLF---KKNKIK 502
E + N + +E +I ++ L ++ +
Sbjct: 54 LPGELIVNL-----VRGARFFSPNGDSVEIPIETELAYVIDRDAFD-EQLAERAQEAGAE 107
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545
G + ++ + I+ ++ T+TAK +I A GS++
Sbjct: 108 LRLGTRV-LDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSI 149
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 51.9 bits (125), Expect = 9e-07
Identities = 59/278 (21%), Positives = 104/278 (37%), Gaps = 50/278 (17%)
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKY--IIIATGS--------KA 544
L +++ ++F + G+ + T E + +Y + +ATG+
Sbjct: 182 LLERSGVEFKLNVRV--GR-----------DITLEELLKEYDAVFLATGAGKPRPLDIPG 228
Query: 545 RSFPGVKF-DENLILSNKGALEMIN-------VPKKLCIIGAGVIGLEIGSIWRRLG-SE 595
GV F + L NK L K++ +IG G ++ RLG
Sbjct: 229 EDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKS 288
Query: 596 VTIL-------EMSSNFLNTVDEEI--AKKAFH--LLNKQGLNIILNT--KIHDIKINKE 642
VT E + E+ A + L Q I N ++ +K +
Sbjct: 289 VTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRV 348
Query: 643 NVLINYSNKSTNVKTEIITSIF----DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN 698
+I + D +++AIG + + + + GLK+++ I V+
Sbjct: 349 EPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVD 408
Query: 699 DN-CETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+N +T+IP ++A GD VRG L A EG A+ I
Sbjct: 409 ENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAI 446
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 51.1 bits (123), Expect = 1e-06
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 384 SFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
S + ++ D+ VIG GP G A+I LA+ G A +
Sbjct: 1 SLMEKEHTDIAVIGGGPAGLAAAIALARAGASVALVA 37
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 50.6 bits (122), Expect = 2e-06
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 536 IIIATG-SKAR-------SFPGVKFDEN--LILSN-KGALEMINVPKKLCIIGAGVIGLE 584
+ I TG R + GV + L N A + V K++ +IG G ++
Sbjct: 229 VFIGTGAGLPRFLGIPGENLGGV-YSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMD 287
Query: 585 IGSIWRRLGSE-VTIL------EMSSNFLNTVDE-EIAKKA---FHLLNKQGLNIILNTK 633
+RLG+E VTI+ EM + + +E E AK+ F L + I+ +
Sbjct: 288 AARTAKRLGAESVTIVYRRGREEMPA----SEEEVEHAKEEGVEFEWL-AAPVEILGDEG 342
Query: 634 IHD-IKINKENVLINYSNKSTNVKTEIITSIF----DKLLIAIGRIPNTNNLNIDKIGLK 688
++ + + + S + I S F D ++ AIG+ PN L+ GL+
Sbjct: 343 RVTGVEF--VRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTP-GLE 399
Query: 689 VNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+N II +D T++P ++A GD+V G A +G AE I
Sbjct: 400 LNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAI 447
Score = 32.1 bits (74), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFK 415
V VIGAGP G A+ RLA+ G+
Sbjct: 143 VAVIGAGPAGLTAAHRLARKGYD 165
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 49.0 bits (118), Expect = 8e-06
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 53/209 (25%)
Query: 529 ETITAKYIIIATGSKARSF--PGVKFDENLILSNKGALEMINV--------P----KKLC 574
+ AK +I+ATG++ R+ PG DE NKG V P K++
Sbjct: 307 AVLKAKTVILATGARWRNMNVPGE--DEYR---NKG------VAYCPHCDGPLFKGKRVA 355
Query: 575 IIGAGVIGLE--I---GSIWRRLGSEVTILEMSSNFLNTV--DEEIAKKAFHLLNKQGLN 627
+IG G G+E I G + VT+LE F + D+ + K L N +
Sbjct: 356 VIGGGNSGVEAAIDLAG-----IVKHVTVLE----FAPELKADQVLQDKLRSLPN---VT 403
Query: 628 IILNTKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKI 685
II N + ++ + + V + Y +++T + + + +F + IG +PNT L K
Sbjct: 404 IITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVF----VQIGLVPNTEWL---KG 456
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDV 714
+++N IIV+ T++P ++A GD
Sbjct: 457 TVELNRRGEIIVDARGATSVPGVFAAGDC 485
Score = 34.4 bits (80), Expect = 0.32
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
+DV+V+G GP G A+I A+ G +T + E
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 46.0 bits (110), Expect = 3e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 382 LMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
L+ ++ DV ++GAGP G A+ LA+ G K A E + GG
Sbjct: 20 LLDYL---EVDVAIVGAGPSGLTAAYYLAKAGLKVAVF------ERKLSFGG 62
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 46.1 bits (110), Expect = 6e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
DV+VIG+G G A++ A+ G K A ++
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVE 29
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 45.9 bits (109), Expect = 7e-05
Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 35/170 (20%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP-SKALLQT 449
+DV+++GAGP G A+ RLA+ G ++ K +E G P L +
Sbjct: 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLE--KGSE-----------PGAKPCCGGGL-S 49
Query: 450 SHSFENV---KNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
+ E + + E + + K I G + K K+
Sbjct: 50 PRALEELIPDFDEEIERKVTGARIYF-----PGEKVAIEVPVGEGYIVDRAKF-DKWLAE 103
Query: 507 HAIFTGK-----------IQNNFHEIQIINKTKETITAKYIIIATGSKAR 545
A G I+ + + + + + AK +I A G +
Sbjct: 104 RAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 45.2 bits (108), Expect = 1e-04
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
DVIVIG G G A++ A++G K I T + C PS +
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLITH---------NTDTIAELSCNPSIGGI 47
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase,
geranyl-CoA carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing
carboxylation, decarboxylation, or transcarboxylation.
During this process, biotin is covalently attached to a
specific lysine.
Length = 67
Score = 40.9 bits (97), Expect = 1e-04
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
T++ KEG+ V + L +E K+ E+ AP G++ +I++ +G V + Q++ +I
Sbjct: 9 TVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 45.0 bits (107), Expect = 1e-04
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTIL------EMSSNFLNTVDEEI--AKKA- 617
I V KK+ ++G G + ++ RLG+EV I+ E+ + EE+ AK+
Sbjct: 278 IKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARV-----EEVHHAKEEG 332
Query: 618 --FHLLNKQGLNIILNTK-----IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIA 670
F LL + I+ + + IK+ + + ++ D ++++
Sbjct: 333 VIFDLLT-NPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMS 391
Query: 671 IGRIPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRG------PMLAHK 723
+G PN + K GLK+N+ I+ ++ T+ ++A GD V G M A K
Sbjct: 392 LGTSPNPLISSTTK-GLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGK 450
Query: 724 AEEEGIMVAEHISGQK 739
+ I E++S +
Sbjct: 451 KAAKAI--DEYLSKKW 464
Score = 29.6 bits (67), Expect = 8.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 376 REAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFK 415
RE + L K V VIG+GP G + LA++G+
Sbjct: 126 RENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYD 165
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 44.5 bits (106), Expect = 2e-04
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 35/181 (19%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL--GGTC--TNVGCIPSKAL 446
+DVIVIG G G +A+I A+ G + ID+ K + GG C TN +
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLGRKILISGGGRCNVTN--SVEPDEF 58
Query: 447 LQTSHSFEN---VKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF--------- 494
L S N +K++ + + E +K+ + G LF
Sbjct: 59 L--SRYPGNPHFLKSALSRFT------PWDFIAFFEELGVPLKEEDHGRLFPVSDKASDI 110
Query: 495 ---LF---KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548
L K+ +K + +++ ++ E + A +++ATG S+P
Sbjct: 111 VDALLNELKELGVKIRTRTRV-LSVEKDDDGRFRVDTDGGEELEADSLVLATGGL--SWP 167
Query: 549 G 549
Sbjct: 168 K 168
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 44.7 bits (106), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ FDV+VIG G G A+I A+ G K A +
Sbjct: 1 VMTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLS 36
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 44.4 bits (105), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+ + DV +IGAG G A+ L Q G I
Sbjct: 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVI 37
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 43.7 bits (104), Expect = 3e-04
Identities = 36/171 (21%), Positives = 52/171 (30%), Gaps = 49/171 (28%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN--VGCI-PSKALLQ 448
DV+V+G GP G A+I A+LG K + E LGG T+ VG + Q
Sbjct: 1 DVVVVGGGPAGVAAAIAAARLGAKVLLV------ERRGWLGGMATSGLVGTDDGNYDRGQ 54
Query: 449 TSHSF------ENVKNSFFEYGINTQNVTLN-------LQKMLERKNNIIKKNNSGILFL 495
+ + L +ML
Sbjct: 55 VIGGIAREFLRRLRARGGPLGNRTSGPWPFDPEVAKLVLDEMLAEAG------------- 101
Query: 496 FKKNKIKFFHGH----AIFTGKIQNNFHEIQIINKTKE-TITAKYIIIATG 541
+ + G+I + + NK+ TI AK I ATG
Sbjct: 102 -----VTVLLHTRVVGVVKEGRIT----GVTVENKSGRLTIRAKVFIDATG 143
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 41.6 bits (98), Expect = 3e-04
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
+ G+ V + L IE K+ E+ AP DG++ +I++ +G V +A+I
Sbjct: 87 EVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 43.3 bits (102), Expect = 5e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
I++ +D +V+GAG G A+I L++ GF TACI
Sbjct: 46 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACI 79
>gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 43.0 bits (102), Expect = 6e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
I++ +DV+V+GAG G A++ +A+ G KTACI
Sbjct: 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACI 41
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 42.8 bits (102), Expect = 6e-04
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRGPMLAHK 723
D +L+A+G L + + G++++E + DN +T+ P ++A GD+ RG L
Sbjct: 390 DLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVW 448
Query: 724 AEEEGIMVAEHI 735
A EG A I
Sbjct: 449 AIAEGRQAARAI 460
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 42.8 bits (101), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+++ +D +V+GAG G A++ L +LG+KTACI
Sbjct: 25 VIDHTYDAVVVGAGGAGLRAALGLVELGYKTACI 58
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 41.9 bits (99), Expect = 7e-04
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
DVI++GAGP G A+ LA+ G K A E + GG
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIF------ERKLSFGG 67
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 42.3 bits (100), Expect = 8e-04
Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 49/181 (27%)
Query: 570 PKKLCIIGAGVIGLEI-GSIWRRLGS-----EVTILEMSSNFLNTVDEEIAKKAFHLLNK 623
K+L ++G G G+EI ++ RRL +VT L ++ L ++ + LL +
Sbjct: 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVT-LIAGASLLPGFPAKVRRLVLRLLAR 203
Query: 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP-----NTN 678
+G+ + + +++ + T D +L A G +
Sbjct: 204 RGIEVHEGA--PVTRGPDGALILA----------DGRTLPADAILWATGARAPPWLAES- 250
Query: 679 NLNIDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDV---------------VR-GPMLA 721
GL ++E+ F+ V+ ++ + P+++A GD VR P+LA
Sbjct: 251 -------GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILA 303
Query: 722 H 722
Sbjct: 304 A 304
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 42.4 bits (100), Expect = 0.001
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG 717
D +++++G PN + GL++N I+V++ +++IP IYA GD+VRG
Sbjct: 676 DLVIVSVGVSPNPLVPSSIP-GLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 42.1 bits (100), Expect = 0.001
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTA 417
FDV+VIG G G A++ A+ G + A
Sbjct: 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVA 29
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 41.8 bits (99), Expect = 0.001
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
FDVI+IG GP G +A+I A+ G + ID
Sbjct: 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLID 33
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 41.4 bits (98), Expect = 0.002
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
M + DVIV+GAG G VA+ LA G + +D+ +NE N LGG
Sbjct: 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ--ENEAN--LGG 43
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 41.4 bits (98), Expect = 0.002
Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 42/226 (18%)
Query: 532 TAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRR 591
K + I A V F L G E + K++ +IG G ++ RR
Sbjct: 234 LGKRLPIPGEDAAGVLDAVDF-----LRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR 288
Query: 592 LG-SEVTIL------EMSSNFLNTVDEEI--------------AKKAFHLLNKQGLNIIL 630
LG EVTI+ +M ++ DEEI ++ G +
Sbjct: 289 LGAEEVTIVYRRTREDMPAH-----DEEIEEALREGVEINWLRTPVEI-EGDENGATGLR 342
Query: 631 NTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690
+ ++++++ + + V E T D +++AIG+ + ++ ++ +
Sbjct: 343 VITVEKMELDEDG-------RPSPVTGEEETLEADLVVLAIGQ--DIDSAGLESVPGVEV 393
Query: 691 ENNFIIVNDNCE-TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+ V+ N T P ++A GD+V GP A G A +I
Sbjct: 394 GRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI 439
Score = 29.8 bits (68), Expect = 6.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 393 VIVIGAGPGGYVASIRLAQLG 413
V VIG GP G A+ L ++G
Sbjct: 140 VAVIGGGPAGLSAAYHLRRMG 160
Score = 29.8 bits (68), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
K++ +IG G GL RR+G VTI E
Sbjct: 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA 168
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 40.8 bits (96), Expect = 0.002
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
P K+ ++G GV+G I LG++VTIL+++ + L +D+ + H L NI
Sbjct: 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRV-HTLYSTPSNIE 226
Query: 630 LNTKIHDIKINKENVLI 646
K D+ I VLI
Sbjct: 227 EAVKKADLVIGA--VLI 241
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 40.8 bits (96), Expect = 0.002
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACI 419
FDVI+IG G G ++RLA+ G K A I
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAII 29
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 39.1 bits (91), Expect = 0.003
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQ 72
+EG+ V + L+ +E K+ E+PAP+DG++ KI++ +G V + Q
Sbjct: 101 REGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQ 147
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 40.5 bits (95), Expect = 0.003
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
K DV ++GAGP G ++ LA+ G ++
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLE 32
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 40.7 bits (96), Expect = 0.003
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424
+ DV+++GAGP G + L Q G + ++ W
Sbjct: 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 40.6 bits (95), Expect = 0.004
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK-KAFHLLNKQGLNI- 628
K++ +IG G ++ +RLG VTI+ + T E A+ + H ++G+N+
Sbjct: 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIV-----YRRTKSEMPARVEELHHALEEGINLA 502
Query: 629 ILNTKIHDIKINKENVLI------------NYSNKSTNVKT-EIITSIFDKLLIAIGRIP 675
+L I + + + + S + + T EI D +++A+G
Sbjct: 503 VLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALG--- 559
Query: 676 NTNN--LNIDKIGLKVNENNFIIVN-DNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVA 732
NT N + + GLK N+ I V + T+I +Y+ GD RG A +A +G A
Sbjct: 560 NTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAA 619
Query: 733 EHISGQKHSINFNA 746
+ I G I F
Sbjct: 620 KEIVG---EIPFTP 630
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 38.9 bits (91), Expect = 0.010
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDE-----WKDN 425
D++V+G GP G + ++++ G CID W +N
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNN 68
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 38.7 bits (90), Expect = 0.013
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 379 VLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+ ++ + + + FDV+++GAG G AS++LA+ G A +
Sbjct: 1 MAAIKTSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVL 41
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism].
Length = 421
Score = 38.6 bits (90), Expect = 0.013
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
NFDV +IG G G + L Q G + A +
Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIV 31
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 38.2 bits (89), Expect = 0.016
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDN 425
+DV VIG GP G A+ LA+ G +T ++ N
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSN 35
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 38.3 bits (89), Expect = 0.016
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
DVIV+GAG G VA+ LA G + +D+ + E+N LGG
Sbjct: 7 DVIVVGAGLAGLVAAAELADAGKRVLILDQ--EGEQN--LGG 44
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 36.3 bits (85), Expect = 0.018
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
P K+ +IGAGV+GL + + LG+EVT+L++ L ++ + + F L Q +
Sbjct: 20 PAKVVVIGAGVVGLGAAATAKGLGAEVTVLDVRPARLRQLESLLGAR-FTTLYSQAELLE 78
Query: 630 LNTKIHDIKINKENVLI 646
K D+ I VLI
Sbjct: 79 EAVKEADLVIG--AVLI 93
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 38.1 bits (90), Expect = 0.021
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
M + +DVIV+G G G A++ A++G KT +
Sbjct: 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLL 33
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 37.9 bits (89), Expect = 0.024
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
M K +DVIVIG G G A++ A++G KT +
Sbjct: 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|129609 TIGR00518, alaDH, alanine dehydrogenase. The family of known
L-alanine dehydrogenases includes representatives from
the Proteobacteria, Firmicutes, and Cyanobacteria, all
with about 50 % identity or better. An outlier to this
group in both sequence and gap pattern is the homolog
from Helicobacter pylori, an epsilon division
Proteobacteria, which must be considered a putative
alanine dehydrogenase. Related proteins include
saccharopine dehydrogenase and the N-terminal half of
the NAD(P) transhydrogenase alpha subunit. All of these
related proteins bind NAD and/or NADP [Energy
metabolism, Amino acids and amines].
Length = 370
Score = 37.6 bits (87), Expect = 0.025
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEE 612
P + IIG GV+G + LG+ VTIL+++ + L +D E
Sbjct: 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE 209
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 37.5 bits (87), Expect = 0.030
Identities = 84/490 (17%), Positives = 153/490 (31%), Gaps = 140/490 (28%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID-EWKDNEENFALGGTCTNVGCIPSKALLQT 449
DV+VIG+G G A++ LA G + +A GG + L +T
Sbjct: 3 CDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGI--------AAVLAET 54
Query: 450 ----SHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
SH + + GI E ++ S + +L
Sbjct: 55 DSIDSHVEDTLAAG---AGICD----------REAVEFVVSDARSAVQWLVD-------Q 94
Query: 506 GHAIFTGKIQNNFHEIQIINKTKETI------TAKYIIIATGSKARSFPGVKFDEN---- 555
G +F Q ++ + + I T + +I KA + P ++ E
Sbjct: 95 G-VLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL 153
Query: 556 -----------LILSNKGALEMINVPKKLCIIG------------AGVIGLEIGSIWRRL 592
+ + N+ +E + + G G I WR
Sbjct: 154 DLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRA- 212
Query: 593 GSEVTILEM------------SSNFLNTVDEEIAKKAFHLLNKQGLNI------------ 628
G V LE + FL + E + + +L+++ G
Sbjct: 213 GVRVRDLEFNQFHPTALYKPRARYFL--ITEAVRGEGAYLVDRDGTRFMADFHPRGELAP 270
Query: 629 --ILNTKIHD--IKINKENVLINYSNKSTNVKTEI--ITSIFDKLLIAIGR--IPNTNNL 680
I+ I + + V ++ S + I + I R IP
Sbjct: 271 RDIVARAIDHEMKRGGADCVFLDASGIE-AFRQRFPTIYAKCLGAGIDPTREPIPVVPAA 329
Query: 681 NIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPM-----LAHKAEEEGIM----V 731
+ G I V+D+ T +P +YAIG+V + LA + E ++
Sbjct: 330 HYTCGG--------ISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSA 381
Query: 732 AEHISGQK---HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRAR 788
AE IS + I+ + + E S ++ + +HN+S
Sbjct: 382 AEDISRRPPYASDISTSP------PWDEPRSENPDDRVVLQHNMS-----------ELRS 424
Query: 789 ILGETSGMVK 798
+ + +G+V+
Sbjct: 425 FMWDYAGIVR 434
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 37.4 bits (87), Expect = 0.032
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 686 GLKVNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
G+ + N + V+ +T++ ++A GD V G +A A E+G A I
Sbjct: 446 GIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI 496
Score = 32.4 bits (74), Expect = 1.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
KK+ IIGAG GL R G +VTI +
Sbjct: 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFD 223
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea [Central intermediary
metabolism, Nitrogen metabolism].
Length = 1201
Score = 37.3 bits (87), Expect = 0.038
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 27 EGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
G+ V + L+ +E K+ + + AP G + KI+ G +V + ++A+++
Sbjct: 1150 VGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 36.5 bits (85), Expect = 0.053
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ D++V+GAGP G + LA G K I+
Sbjct: 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIE 33
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 36.0 bits (84), Expect = 0.068
Identities = 58/265 (21%), Positives = 103/265 (38%), Gaps = 91/265 (34%)
Query: 513 KIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP-- 570
K F + K T AK +I+ATG +D + N ++NVP
Sbjct: 98 KTDGGFE----VTTEKGTYQAKNVIVATGY---------YD----IPN-----LLNVPGE 135
Query: 571 -----------------KKLCIIGAG---VI-GLEIGSIWRRLGSEVTIL----EMSS-- 603
+K+ ++G V LE+ +R+ G+EVT++ E+SS
Sbjct: 136 DLPKVSHYYKEAHPYFGQKVVVVGGSNSAVDAALEL---YRK-GAEVTMVHRGDEVSSSV 191
Query: 604 ------NFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKT 657
+ N + E K F N+++ +I +++V +
Sbjct: 192 KYWVRPDIENRIKEGSIKAYF------------NSRVK--EITEDSVTLE------TPDG 231
Query: 658 EIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND--NCETNIPNIYAIGDVV 715
E+ T D + G P+ L + +G++++E+ I V + ETN+P +Y G V+
Sbjct: 232 EVHTIPNDFVFALTGYRPDFEFL--ESLGVELDEDTGIPVYNPETMETNVPGLYLAG-VI 288
Query: 716 RGPMLAHKA-----EEEGIMVAEHI 735
M +K ++AEHI
Sbjct: 289 AAGMDTNKIFIENGRFHAPLIAEHI 313
Score = 30.6 bits (70), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
DVI+IGAGP G +I + G I+
Sbjct: 1 DVIIIGAGPCGLACAIEAQKAGLSYLIIE 29
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 36.3 bits (84), Expect = 0.074
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
D+ VIG GP G ++ LA+ G + I+
Sbjct: 1 DLAVIGGGPAGLAIALELARPGLRVQLIE 29
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 36.4 bits (85), Expect = 0.078
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
KEG+ V + ++ +E K+ E+ AP DG + +I++ +G V V+ I
Sbjct: 539 KEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEI 590
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 35.8 bits (83), Expect = 0.078
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422
DV+++G GP G + ++ LA+ G + ++
Sbjct: 3 DVLIVGGGPAGLMLALLLARAGVRVVLVERH 33
>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional.
Length = 321
Score = 35.8 bits (82), Expect = 0.084
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 532 TAKYIIIATGSKARSFPGVKFDENLILSNKGALEMIN----VPKKLCIIGAGVIGLEIGS 587
T +IIATG+ AR + G+ +E A + +K+ +IG G +E
Sbjct: 105 TCDALIIATGASAR-YLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEAL 163
Query: 588 IWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK-QGLNIILNT-----KIHDIKINK 641
+ SEV ++ F E+I K L++K + NIIL+T ++ ++
Sbjct: 164 YLSNIASEVHLIHRRDGFRA---EKILIK--RLMDKVENGNIILHTNRTLEEVTGDQMGV 218
Query: 642 ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT----NNLNIDKIGLKVNENNFIIV 697
V + + S N+++ + +F +AIG PNT L ++ +KV I
Sbjct: 219 TGVRLRDTQNSDNIESLDVAGLF----VAIGHSPNTAIFEGQLELENGYIKVQSG---IH 271
Query: 698 NDNCETNIPNIYAIGDVV 715
+ +T+IP ++A GDV+
Sbjct: 272 GNATQTSIPGVFAAGDVM 289
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 36.2 bits (84), Expect = 0.088
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
M+ + ++DV+VIGAG G A+I + G + A +
Sbjct: 1 MTEVERHSYDVVVIGAGGAGLRAAIEARERGLRVAVV 37
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 35.2 bits (81), Expect = 0.10
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
DVI++GAGP G A+ LA+ G K + E + A GG
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVL------ERSLAFGG 58
>gnl|CDD|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. This family now also contains the lysine
2-oxoglutarate reductases.
Length = 150
Score = 34.1 bits (79), Expect = 0.10
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
P K+ +IG GV+GL + + LG+ VTIL++
Sbjct: 20 PAKVVVIGGGVVGLGAAATAKGLGAPVTILDV 51
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 35.6 bits (83), Expect = 0.10
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 393 VIVIGAGPGGYVASIRLAQLG 413
V+V+GAGP G +I LAQ G
Sbjct: 26 VVVVGAGPVGLALAIDLAQQG 46
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 35.1 bits (81), Expect = 0.11
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
DV+++GAGP G A+ LA+ G K A I E + + GG
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAII------ERSLSPGG 54
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 35.5 bits (82), Expect = 0.13
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVI 74
+++ EG+ V E L+ +E K+ E+ A G + +I++ G V+ QV+
Sbjct: 527 SIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 35.5 bits (82), Expect = 0.13
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGD 713
GL V I++ND+C+T+ P+IYAIG+
Sbjct: 254 GLAVAPRGGIVINDSCQTSDPDIYAIGE 281
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 32.1 bits (74), Expect = 0.13
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 395 VIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436
++GAG G VA+ LA+ G ++ K + +GG
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLE--KRDR----IGGNAY 36
Score = 29.0 bits (66), Expect = 1.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 575 IIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605
I+GAG+ GL + + G +V +LE
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 35.5 bits (82), Expect = 0.14
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFK 415
+ FDVIVIGAG G A++ A G K
Sbjct: 14 DAEFDVIVIGAGAAGMSAALFAAIAGLK 41
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 35.5 bits (82), Expect = 0.15
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 30/197 (15%)
Query: 561 KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGS--------EVTILEMSSNFLNTVDEE 612
+G +P+ L +IG G + ++I RL +VT LE + + EE
Sbjct: 409 RGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEE 468
Query: 613 IAKKAFHLLNKQGLNI----------ILNTKIHDIKINKENVLINYSNKSTNVK---TEI 659
I + ++G+ I I N K+ +K K+ V + N K ++
Sbjct: 469 IEEGL-----EEGVVIYPGWGPMEVVIENDKVKGVKF-KKCVEVFDEEGRFNPKFDESDQ 522
Query: 660 ITSIFDKLLIAIGRIPNTNNLNID-KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
I D ++ AIG+ P+ + L + K L+ I+ N+ +T+IP ++A GD+V GP
Sbjct: 523 IIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGR-ILTNEYGQTSIPWLFAGGDIVHGP 581
Query: 719 MLAHKAEEEGIMVAEHI 735
+ H +G AE I
Sbjct: 582 DIIH-GVADGYWAAEGI 597
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 35.1 bits (81), Expect = 0.19
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQ 411
M +D +++G+G G V + RL+
Sbjct: 4 MKMEYDYVIVGSGSAGSVLAARLSD 28
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 34.8 bits (80), Expect = 0.19
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN-DNCETNIPNIYAIGDVVRGPMLAHK 723
D +L+A+G + + +D G+K I D+ T+IP ++A GD RG L
Sbjct: 404 DLVLLAMGFV-GPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVW 462
Query: 724 AEEEGIMVA 732
A EG A
Sbjct: 463 AINEGRKAA 471
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 34.6 bits (80), Expect = 0.20
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
N+ D+ ++G G G ++ LAQ GF A ++
Sbjct: 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLE 35
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 34.6 bits (80), Expect = 0.25
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKT 416
+VIGAG GG +IRLA G
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPV 24
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 34.2 bits (79), Expect = 0.28
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 695 IIVNDNCETNIPNIYAIGDV----VRGP-MLAHKAEEEGIM----VAEHI 735
+ N + ET+IP +YAIG+V V G LA + EG++ AEHI
Sbjct: 335 VKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHI 384
>gnl|CDD|205711 pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like.
Length = 50
Score = 30.5 bits (70), Expect = 0.28
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 51 APQDGIINKIIITDGSIVTSNQVIALIDTDISKL 84
P G + + + +G V V+ +D++ +
Sbjct: 7 PPVSGRVVAVNVKEGQSVKKGDVLFTLDSEELQA 40
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 33.4 bits (77), Expect = 0.30
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 41/201 (20%)
Query: 394 IVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSF 453
+V+GAG G + L LG I + GG L Q S F
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVII-----VDRGAQPGGHWRKWYPFVR--LHQPS-FF 52
Query: 454 ENVKNSFF----------EYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
++ + + ++ ++ ++ I + ++
Sbjct: 53 YGDFGMPDLNALSIDTSPKWDGKAELAS--GAEIAAYLEDLARRYGLPIRLSTRVTAVER 110
Query: 504 FHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATG----SKARSFPGVKFDENLILS 559
F + ET+ A Y++ ATG K FPG D +
Sbjct: 111 ----------DGGRFV---VRLTDGETVRADYVVDATGAFSVPKPPGFPG--ADAEGVHL 155
Query: 560 NKGALEMINV-PKKLCIIGAG 579
LE I++ K + +IG G
Sbjct: 156 VD-VLERIDLKGKTVAVIGGG 175
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 34.0 bits (78), Expect = 0.41
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
V+VIG G G A++ LA +GFK + E+ ++GG
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLV------EKEPSIGGR 162
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 33.6 bits (77), Expect = 0.43
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422
+D IVIG+G GG V + +LA G K ++ +
Sbjct: 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERY 32
>gnl|CDD|221723 pfam12700, HlyD_2, HlyD family secretion protein. This family is
related to pfam00529.
Length = 328
Score = 33.6 bits (77), Expect = 0.47
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 30 LVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID-TDISKLSSKT 88
LV+RNE ++ A G I + +G V QV+A ID + + + +
Sbjct: 16 LVIRNEAVVT-----------AEVSGYIK-YYVKEGEKVKKGQVLATIDSSGLDQQLLEA 63
Query: 89 EIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINE 148
+ L + I L N K ++ L+ N +
Sbjct: 64 LAALDQAEAELEELKSEEQSSISDILQLFSESRNKKLFSAVYDSKNELEAALNKYSNASG 123
Query: 149 EKQE 152
+
Sbjct: 124 QLSG 127
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 33.6 bits (78), Expect = 0.48
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 572 KLCIIGAGVIGLEIGSIWR--RLGSEVTILE 600
++ ++G+GVIG + S W + G EVT+++
Sbjct: 2 RVVVLGSGVIG--VTSAWYLAQAGHEVTVID 30
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears to
be present in all complete eubacterial genomes so far,
as well as Saccharomyces cerevisiae. A subset of these
organisms have a closely related protein. GidA is absent
in the Archaea. It appears to act with MnmE, in an
alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34 in
certain tRNAs. The shorter, related protein, previously
called gid or gidA(S), is now called TrmFO (see model
TIGR00137) [Protein synthesis, tRNA and rRNA base
modification].
Length = 617
Score = 33.5 bits (77), Expect = 0.48
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKT 416
FDVIVIG G G A++ A++G KT
Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKT 26
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 33.5 bits (77), Expect = 0.50
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+ FD +VIGAG G A+++++Q G A +
Sbjct: 6 REFDAVVIGAGGAGMRAALQISQSGQSCALL 36
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 33.6 bits (77), Expect = 0.60
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
+N + DV+V+GAGP G A++ A+ G + +D E GG+
Sbjct: 160 VNAHCDVLVVGAGPAGLAAALAAARAGARVILVD------EQPEAGGS 201
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 32.9 bits (75), Expect = 0.62
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 387 MNKNFDVIVIGAGPGGYV---ASIRLAQLGFKTACIDEW 422
M+ DV++IG GG V A+ LA+ G ++
Sbjct: 1 MSMKMDVVIIG---GGIVGLSAAYYLAERGADVTVLEAG 36
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 32.9 bits (75), Expect = 0.71
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 686 GLKVNENNFIIVNDNC----ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
G+ ++ II D +T P I+A GD VRG L A EG A+ I
Sbjct: 408 GITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGI 461
>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase.
Members of this family are the enzyme 4-hydroxybenzoate
3-monooxygenase, also called p-hydroxybenzoate
hydroxylase. It converts 4-hydroxybenzoate + NADPH +
molecular oxygen to protocatechuate + NADPH + water. It
contains monooxygenase (pfam01360) and FAD binding
(pfam01494) domains. Pathways that contain this enzyme
include the protocatechuate 4,5-degradation pathway
[Energy metabolism, Other].
Length = 390
Score = 32.8 bits (75), Expect = 0.75
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603
++ IIGAG GL +G + + G + ILE S
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 32.7 bits (75), Expect = 0.79
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 392 DVIVIGAGP-GGYVA-SIRLAQLGFKTACID 420
D++++GAG G +A +R A+ G + ID
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLID 31
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 32.9 bits (76), Expect = 0.79
Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 43/177 (24%)
Query: 394 IVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG--------GTC--TNVGCIPS 443
I+IG G G +A+I A+ G + E+N +G G C TN P
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLL------EKNKKIGKKLLISGGGRCNLTNSCPTPE 54
Query: 444 ------------KALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNN---IIKKN 488
++ L S +++ + F G+ ++ ++ ++
Sbjct: 55 FVAYYPRNGKFLRSALSR-FSNKDLIDFFESLGLEL--KVEEDGRVFPCSDSAADVL--- 108
Query: 489 NSGILFLFKKNKIKFFHGHAIFT-GKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544
+L K+ ++ + + K F + + A +IIATG +
Sbjct: 109 -DALLNELKELGVEILTNSKVKSIKKDDGGFG----VETSGGEYEADKVIIATGGLS 160
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 32.9 bits (76), Expect = 0.85
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
M V++IGAGP G A+ L + G+ ++
Sbjct: 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEA 35
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 32.6 bits (75), Expect = 0.96
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 695 IIVNDNCETNIPNIYAIGDV 714
I V+ N T+IP +YAIG+V
Sbjct: 344 IAVDANGRTSIPGLYAIGEV 363
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 32.5 bits (75), Expect = 0.97
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACI---DEWK 423
V+++G G GG A+I L + G + EW+
Sbjct: 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWR 40
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 32.5 bits (74), Expect = 1.1
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422
FDVIV+GAG G A+ LA+ G KT ++++
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 32.3 bits (74), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 8/32 (25%)
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRG 717
G+++NE+ CETNIP ++A G+V G
Sbjct: 350 GIRINED--------CETNIPGLFACGEVAGG 373
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 32.1 bits (73), Expect = 1.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
M+ M +DV+V+G+G GG A++ A G K +++
Sbjct: 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK 39
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 32.1 bits (73), Expect = 1.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
MNK +D+ V+G G G ++ A+ G A I+
Sbjct: 1 MNK-YDIAVVGGGMVGAATALGFAKQGRSVAVIE 33
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 31.5 bits (72), Expect = 1.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 572 KLCIIGAGVIGLEIGSIWRRL---GSEVTILEM 601
+ +IG G++GL S L G VT+LE
Sbjct: 1 DVVVIGGGIVGL---STAYELARRGLSVTLLER 30
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp. strain
PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria, where
myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed to
myxoxanthophyll [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 492
Score = 32.0 bits (73), Expect = 1.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
V+VIGAG G A+ LA+ G++ + E++ GG
Sbjct: 4 VVVIGAGIAGLTAAALLAKRGYRVTLL------EQHAQPGG 38
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 32.0 bits (73), Expect = 1.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424
++VI+IG GP G + + LA G KT I+ K+
Sbjct: 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36
>gnl|CDD|165324 PHA03026, PHA03026, hypothetical protein; Provisional.
Length = 421
Score = 31.9 bits (72), Expect = 1.8
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 37 LIDIETDKVIL---ELPAPQDGIINKI---IITDGSIVTSNQVIALIDTDISKLSSKTEI 90
L D T K+I ++ P D I I I+ D ++ N L+DTDI +I
Sbjct: 275 LKDPHTQKIICDNADIDLPFDETIKDINSKILDDEEFISLNIFNELLDTDIGH--KLLQI 332
Query: 91 KNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTG-KDGRIIKEDVLKVLSSIK 144
+ K + ++ I+ + +K + + LE +N G KDG I+ VL+ L +IK
Sbjct: 333 FSGKSPEEISGIIFGAEEKANNGDILE----DNSFGFKDGDIVLISVLECLDAIK 383
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 31.5 bits (72), Expect = 1.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ FDV+V+G G G ++ LAQ G + A +
Sbjct: 2 YHMKFDVVVVGGGLVGASLALALAQSGLRVALLA 35
>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related
dehydrogenases. Alanine dehydrogenase/Transhydrogenase,
such as the hexameric L-alanine dehydrogenase of
Phormidium lapideum, contain 2 Rossmann fold-like
domains linked by an alpha helical region. Related
proteins include Saccharopine Dehydrogenase (SDH),
bifunctional lysine ketoglutarate reductase
/saccharopine dehydrogenase enzyme,
N(5)-(carboxyethyl)ornithine synthase, and Rubrum
transdehydrogenase. Alanine dehydrogenase (L-AlaDH)
catalyzes the NAD-dependent conversion of pyrucate to
L-alanine via reductive amination. Transhydrogenases
found in bacterial and inner mitochondrial membranes
link NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matirx side. DI contains 2
domains with Rossmann folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with one dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
classical Rossmann domains.
Length = 317
Score = 31.6 bits (72), Expect = 1.9
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
P K+ IIGAGV+GL I ++LG+ V + ++
Sbjct: 162 PAKVLIIGAGVVGLGAAKIAKKLGANVLVYDI 193
>gnl|CDD|181526 PRK08659, PRK08659, 2-oxoglutarate ferredoxin oxidoreductase
subunit alpha; Validated.
Length = 376
Score = 31.4 bits (72), Expect = 2.0
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 513 KIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546
KI+ N +I + + A+ +++A GS ARS
Sbjct: 255 KIEKNRDDIVLY-EEYMLEDAEVVVVAYGSVARS 287
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 31.5 bits (72), Expect = 2.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 695 IIVNDNCETNIPNIYAIGD---VVRGPMLAHKAEEEGIMVAEHI 735
I V+++ T+I +Y GD + RG + A +GI AE I
Sbjct: 439 IKVDEDLSTSIKGLYPAGDGAGLARGIV---SAAADGIKAAEGI 479
Score = 30.8 bits (70), Expect = 3.6
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAI 671
++ K L G I NT++ DI+I VL K ++ D +++A
Sbjct: 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIE-------ADYVVLAP 226
Query: 672 GRI-PNTNNLNIDKIGLKVNENNFII 696
GR + + K+G+K+ F I
Sbjct: 227 GRSGRDWFEMLHKKLGVKMRAKPFDI 252
Score = 30.4 bits (69), Expect = 5.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQL-----GFKTACIDEWKDNEEN 428
MN DV+++GAGP G A+ L+ K +D D E+
Sbjct: 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR 61
>gnl|CDD|185750 cd09237, V_ScBro1_like, Protein-interacting V-domain of
Saccharomyces cerevisiae Bro1 and related domains. This
family contains the V-shaped (V) domain of Saccharomyces
cerevisiae Bro1, and related domains. It belongs to the
V_Alix_like superfamily which also includes the V-domain
of Saccharomyces cerevisiae Rim20 (also known as PalA),
mammalian Alix (apoptosis-linked gene-2 interacting
protein X), His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23), and related
domains. Bro1 interacts with the ESCRT (Endosomal
Sorting Complexes Required for Transport) system, and
participates in endosomal trafficking. The mammalian
Alix V-domain (belonging to a different family) contains
a binding site, partially conserved in the superfamily,
for the retroviral late assembly (L) domain YPXnL motif.
The Alix V-domain is also a dimerization domain. Bro1
also has an N-terminal Bro1-like domain, which binds
Snf7, a component of the ESCRT-III complex, and a
C-terminal proline-rich region (PRR). The C-terminal
portion (V-domain and PRR) of S. cerevisiae Bro1
interacts with Doa4, a ubiquitin thiolesterase needed to
remove ubiquitin from MVB cargoes. It interacts with a
YPxL motif in the Doa4s catalytic domain to stimulate
its deubiquitination activity.
Length = 356
Score = 31.5 bits (72), Expect = 2.0
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 69 TSNQVIALIDTDISKLSSKTE--IKNKKDI-KNLNTIVMPSAKKILSD-----NNLEISK 120
+ + +L+D D S+ IK +++ ++LN I +++L D +N +IS
Sbjct: 177 SGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIK-EERQRVLKDLKQKIHNDDISD 235
Query: 121 --INNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPY 157
I N K ++ K + E+ EK+KP
Sbjct: 236 ILILN------SKSKSEIEKQ------LFPEELEKFKPL 262
>gnl|CDD|222128 pfam13437, HlyD_3, HlyD family secretion protein. This is a
family of largely bacterial haemolysin translocator
HlyD proteins.
Length = 102
Score = 29.3 bits (66), Expect = 2.4
Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 51 APQDGIINKIIITDGSIVTSNQVIA-LIDTD 80
AP DG++ ++ + +G +V + +A ++D D
Sbjct: 4 APIDGVVAELDVEEGQVVAAGDPLAEIVDPD 34
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 31.0 bits (71), Expect = 2.5
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 575 IIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
++GAG IGL + + + G+ V ++++ L E A ++ +
Sbjct: 165 VVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGD 212
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 31.2 bits (71), Expect = 2.8
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 695 IIVNDNCETNIPNIYAIGDV 714
++ + N +T+IP +YA+G+
Sbjct: 350 VVTDLNNQTSIPGLYAVGET 369
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 31.1 bits (71), Expect = 2.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424
DV+++G GP G + +L+ T I E K
Sbjct: 34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 31.3 bits (71), Expect = 3.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 701 CETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+T+ P I+A GD VRG L A EG A+ I
Sbjct: 613 YQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGI 647
>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 291
Score = 30.6 bits (69), Expect = 3.2
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
K + ++G+GV+G I ++ R G +VTI+++S L E I + L N
Sbjct: 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRN 55
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 30.8 bits (70), Expect = 3.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFK 415
M K V+++G G GG A++ LA+ G K
Sbjct: 1 MTKVTPVLIVGGGIGGLAAALALARQGIK 29
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 31.0 bits (71), Expect = 3.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFK 415
D +IG G G ++ LA+ G++
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQ 285
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.7 bits (70), Expect = 3.6
Identities = 19/126 (15%), Positives = 30/126 (23%), Gaps = 17/126 (13%)
Query: 9 PKLSESISEATLLNWHK--KEGELVVRNEN-------------LIDIETDKVILELPAPQ 53
KL++ I+ +L W + K E ++N L ++
Sbjct: 317 CKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSAFISEIANASAPAN 376
Query: 54 DGIINKIIITDGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNTIVMPS--AKKIL 111
I S T S +K + P A
Sbjct: 377 PTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAP 436
Query: 112 SDNNLE 117
NLE
Sbjct: 437 PSLNLE 442
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 30.8 bits (69), Expect = 3.8
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 18 ATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
+++ H G+ V + ++ IE K+ E+ AP +G++ +I+ G VT QV+ +
Sbjct: 534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRV 593
Query: 78 D 78
+
Sbjct: 594 E 594
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 30.6 bits (70), Expect = 3.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 388 NK-NFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
NK FDVIV+G G G A+ L +LG+
Sbjct: 32 NKRKFDVIVVGTGLAGASAAATLGELGYNVKVF 64
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 30.8 bits (70), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKT 416
+DV+V+G+G G VA++ A G T
Sbjct: 7 EYDVVVVGSGAAGMVAALTAAHRGLST 33
>gnl|CDD|182654 PRK10695, PRK10695, hypothetical protein; Provisional.
Length = 859
Score = 30.6 bits (70), Expect = 4.2
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 9 PKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDG 65
P+ + L+W + G+L+V +L+LP ++ I+DG
Sbjct: 214 PQEPSPLD--AELSWQGQSGQLIVTARG-----NPDPLLDLPWQFTR--QQLTISDG 261
>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 288
Score = 30.1 bits (68), Expect = 4.3
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615
+KL ++GAGV+G I ++ G + T++++ L + +EIA
Sbjct: 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIAS 46
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 130
Score = 29.0 bits (65), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 49 LPAPQDGIINKIIITDGSIVTSNQ 72
+P+P G I K+++ G VT NQ
Sbjct: 64 MPSPMPGTILKVLVAVGDQVTENQ 87
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 30.4 bits (69), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 697 VNDNCETNIPNIYAIGDVVRGP---MLA 721
VN+ ET +P +YA GD+ P ML
Sbjct: 361 VNEKAETTVPGLYAAGDMASVPHNYMLG 388
>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
Length = 392
Score = 30.2 bits (69), Expect = 4.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 574 CIIGAGVIGLEIGSIWRRLGSEVTILE 600
IIGAG GL +G + G + +LE
Sbjct: 6 AIIGAGPAGLLLGQLLHLAGIDSVVLE 32
>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family
oxidoreductase 2. The yeast protein called old yellow
enzyme and FadH from Escherichia coli (2,4-dienoyl CoA
reductase) are enzymes with 4Fe-4S, FMN, and FAD
prosthetic groups, and interact with NADPH as well as
substrate. Members of this related protein family occur
in the vicinity of the putative mycofactocin
biosynthesis operon in a number of Actinobacteria such
as Frankia sp. and Rhodococcus sp., in Pelotomaculum
thermopropionicum SI (Firmicutes), and in Geobacter
uraniireducens Rf4 (Deltaproteobacteria). The function
of this oxidoreductase is unknown.
Length = 645
Score = 30.4 bits (69), Expect = 4.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
L K++ ++G G GLE + R G VT+ E
Sbjct: 371 VTLPPPRRRKRVLVVGGGPAGLEAAATAARRGHRVTLFE 409
>gnl|CDD|224996 COG2085, COG2085, Predicted dinucleotide-binding enzymes [General
function prediction only].
Length = 211
Score = 29.6 bits (67), Expect = 5.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
+ IIG G IG + + G EV I
Sbjct: 1 MMIIAIIGTGNIGSALALRLAKAGHEVII 29
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 30.3 bits (69), Expect = 5.2
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 30 LVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDISKLSSK 87
+ + + + IE++ +I + P ++ ++ + V S QVIA I S L+ K
Sbjct: 379 FLCKIDLYVTIESEDIIHNVNIPPKSLL---LVQNDQYVESEQVIAEIRAGTSTLNFK 433
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 30.4 bits (69), Expect = 5.3
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+ +DV+++GAG G A+I +TA +
Sbjct: 1 MQQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVL 33
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 30.0 bits (68), Expect = 5.5
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 781 FLANSRARILGETSGMVKILSDMKSDEILGIHII-----GPMAS---ELIAEAVIAIEFR 832
+L +SRAR+L + + ++L + H+I GP A +LIA A +E
Sbjct: 97 YLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIATAAEELEAA 156
Query: 833 ASS-EDIA 839
A+S +D+A
Sbjct: 157 ATSADDMA 164
>gnl|CDD|233308 TIGR01198, pgl, 6-phosphogluconolactonase. This enzyme of the
pentose phosphate pathway is often found as a part of a
multifunctional protein with [Energy metabolism, Pentose
phosphate pathway].
Length = 233
Score = 29.6 bits (67), Expect = 5.6
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 365 ALSYDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASI 407
A Y+ + A I+ FD++++G GP G+ AS+
Sbjct: 108 AELYEQEL---AAAFQP----IVFPVFDLLLLGMGPDGHTASL 143
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 29.9 bits (68), Expect = 5.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGF-KTACID 420
D++++G GP G ++ LA+ G K A I+
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIE 30
>gnl|CDD|180970 PRK07417, PRK07417, arogenate dehydrogenase; Reviewed.
Length = 279
Score = 29.9 bits (68), Expect = 5.7
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 575 IIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH-------LLNKQGLN 627
I+G G+IG +G R LG V + S +T + I + LL L
Sbjct: 5 IVGLGLIGGSLGLDLRSLGHTVYGV---SRRESTCERAIERGLVDEASTDLSLLKDCDL- 60
Query: 628 IILNTKIHDIKINKENVLINYSNKST------NVKTEII 660
+IL I + + LI +VK I+
Sbjct: 61 VILALPIGLL-LPPSEQLIPALPPEAIVTDVGSVKAPIV 98
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 30.3 bits (69), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQ 411
M+ DV++IG+G G ++RLA+
Sbjct: 1 MNTSPEHQCDVLIIGSGAAGLSLALRLAE 29
>gnl|CDD|188426 TIGR03911, pyrrolys_PylD, pyrrolysine biosynthesis protein PylD.
This protein is PylD, part of a three-gene cassette that
is sufficient to direct the biosynthesis of pyrrolysine,
the twenty-second amino acid, incorporated in some
species at a UAG canonical stop codon [Amino acid
biosynthesis, Other].
Length = 266
Score = 29.8 bits (67), Expect = 5.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
DV+VIG GP G A+ L GF D
Sbjct: 147 DVLVIGLGPVGRAAAFHLVDKGFHVYVYD 175
>gnl|CDD|223795 COG0723, QcrA, Rieske Fe-S protein [Energy production and
conversion].
Length = 177
Score = 29.4 bits (66), Expect = 5.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 423 KDNEENFALGGTCTNVGCIPS 443
N+E A CT++GC
Sbjct: 96 VGNKEIVAYSAICTHLGCTVP 116
>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific
2-hydroxy acid dehydrogenases and related
dehydrogenases. The formate/glycerate dehydrogenase
like family contains a diverse group of enzymes such as
formate dehydrogenase (FDH), glycerate dehydrogenase
(GDH), D-lactate dehydrogenase, L-alanine dehydrogenase,
and S-Adenosylhomocysteine hydrolase, that share a
common 2-domain structure. Despite often low sequence
identity, these proteins typically have a characteristic
arrangement of 2 similar domains of the alpha/beta
Rossmann fold NAD+ binding form. The NAD(P) binding
domain is inserted within the linear sequence of the
mostly N-terminal catalytic domain. Structurally, these
domains are connected by extended alpha helices and
create a cleft in which NAD(P) is bound, primarily to
the C-terminal portion of the 2nd (internal) domain.
While many members of this family are dimeric, alanine
DH is hexameric and phosphoglycerate DH is tetrameric.
2-hydroxyacid dehydrogenases are enzymes that catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate dehydrogenase (FDH) catalyzes the NAD+-dependent
oxidation of formate ion to carbon dioxide with the
concomitant reduction of NAD+ to NADH. FDHs of this
family contain no metal ions or prosthetic groups.
Catalysis occurs though direct transfer of a hydride ion
to NAD+ without the stages of acid-base catalysis
typically found in related dehydrogenases.
Length = 310
Score = 29.9 bits (67), Expect = 6.1
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN--KQGLN 627
K + ++GAGV+G E + R LG++V I +++ L ++E K L +
Sbjct: 160 GKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADV 219
Query: 628 IILNTKIHDI 637
I+ T +
Sbjct: 220 IVTTTLLPGK 229
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 30.0 bits (68), Expect = 6.4
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
KEG+ V + L+ +E K+ L AP+DG++ K+ + +G V V+ +
Sbjct: 592 KEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system
(GCS) found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of
4 different components (P-, H-, T- and L-proteins)
which catalyzes the oxidative cleavage of glycine. The
H-protein shuttles the methylamine group of glycine
from the P-protein (glycine dehydrogenase) to the
T-protein (aminomethyltransferase) via a lipoyl group,
attached to a completely conserved lysine residue.
Length = 96
Score = 27.9 bits (63), Expect = 6.7
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 25 KKEGELVVRNENLIDIETDKVILELPAPQDGII 57
+ G V + + +E+ K +L +P G +
Sbjct: 37 PEVGTEVKKGDPFGSVESVKAASDLYSPVSGEV 69
>gnl|CDD|233547 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer
membrane [Transport and binding proteins, Unknown
substrate].
Length = 322
Score = 29.6 bits (67), Expect = 7.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 48 ELPAPQDGIINKIIITDGSIVTSNQVIALIDTDISKLS 85
+L A G I KI + +G V QV+A +D D +L+
Sbjct: 28 DLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLA 65
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 29.5 bits (66), Expect = 7.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
FD I++GAG G VA++ LA+ G + I+
Sbjct: 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIE 35
>gnl|CDD|237550 PRK13899, PRK13899, type IV secretion system protein VirB3;
Provisional.
Length = 97
Score = 27.8 bits (62), Expect = 8.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 359 RPINYFALSYDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPG----GYVAS 406
RP F +SY ++ ++S+M FI +F ++ I A PG GY+
Sbjct: 16 RPPMIFGVSYKFAALN---MIISMMVFIWTNDFRILFI-AAPGIHGIGYIIC 63
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 29.5 bits (67), Expect = 9.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 24 HKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVI 74
EG+ V + L+ +E K+ E+ A Q G + I + +G V +
Sbjct: 539 IVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTL 589
>gnl|CDD|106077 PRK13040, PRK13040, superantigen-like protein; Reviewed.
Length = 231
Score = 28.9 bits (64), Expect = 9.3
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 126 GKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAER 185
GKD + + I EE + + +S N+ + V + R +
Sbjct: 85 GKDIEKYPQGEHDKQDAFLVIEEETVNGRQYSIGGLSKTNSKEFSKEVDVKVTRK--IDE 142
Query: 186 LLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNV 224
+ +S T EI+++ +L K + K +E +
Sbjct: 143 SSEKSKDSKFKITKEEISLK---ELDFKLRKKLMEEEKL 178
>gnl|CDD|150812 pfam10190, Tmemb_170, Putative transmembrane protein 170. Tmem170
is a family of putative transmembrane proteins conserved
from nematodes to humans. The protein is only of
approximately 130 amino acids in length. The function is
unknown.
Length = 105
Score = 27.7 bits (62), Expect = 9.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 808 ILGIHIIGPMASELIAEAVIAIEFRASSEDIARI 841
IL + ++ P+ +I A IA +RA+ + ++ I
Sbjct: 47 ILVMGVLSPLTGGVITSAAIAGVYRAAGKPMSPI 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,141,220
Number of extensions: 4567466
Number of successful extensions: 5942
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5648
Number of HSP's successfully gapped: 350
Length of query: 866
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 761
Effective length of database: 6,280,432
Effective search space: 4779408752
Effective search space used: 4779408752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.9 bits)