RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9583
(866 letters)
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 726 bits (1876), Expect = 0.0
Identities = 217/479 (45%), Positives = 316/479 (65%), Gaps = 12/479 (2%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+ FDVIVIGAGPGGYVA+I+ AQLG KTA I+++K E ALGGTC NVGCIPSKALL
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLD 61
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+S+ F SF +GI+T V +++ M+ RK+ I++ G+ L K N + F GH
Sbjct: 62 SSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHG 121
Query: 509 IFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
++++ + + + + +I+A+GSK P D+++I+ + GAL+
Sbjct: 122 KLLAG-----KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDF 176
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
NVP KL +IGAGVIGLE+GS+W RLG+EVT+LE FL VDE++AK+A +L KQGL
Sbjct: 177 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGL 236
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I+L ++ ++ + V + + + FDKL++A+GR P T +L G
Sbjct: 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQA-----FDKLIVAVGRRPVTTDLLAADSG 291
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
+ ++E FI V+D C T++P +YAIGDVVRG MLAHKA EEG++VAE I+G K +N++
Sbjct: 292 VTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDL 351
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P VIYT PEIA VGKTEQ LK ++ NVG+FPF A+ RA +T+G VK+++D K+D
Sbjct: 352 IPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTD 411
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
+LG+H+IGP A+EL+ + IA+EF S+ED+ + HP+LSEA+ EAA+++ +I+
Sbjct: 412 RVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIH 470
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 720 bits (1860), Expect = 0.0
Identities = 210/488 (43%), Positives = 308/488 (63%), Gaps = 21/488 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+NK+ DV++IG GP GYVA+I+ AQLGF TAC+++ LGGTC NVGCIPSKAL
Sbjct: 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG------KLGGTCLNVGCIPSKAL 55
Query: 447 LQTSHSFENVKNSFFEYGINTQ-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
L SH F + + GI+ ++ +N+ + K++ +K+ GI LFKKNK+ ++
Sbjct: 56 LNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYK 115
Query: 506 GHAIFTGKIQNNFHEIQIIN--------KTKETITAKYIIIATGSKARSFPGVKFDENLI 557
G+ F + +I++ K + K II+ATGS+ FPG++ DE I
Sbjct: 116 GNGSFEDE-----TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI 170
Query: 558 LSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617
+S+ GAL + +PK+L IIG G+IGLE+GS++ RLGS+VT++E ++D E+AK
Sbjct: 171 VSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKAT 230
Query: 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677
L KQGL+ L+TK+ K N + ++ + T + + LL+A+GR P
Sbjct: 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTK-TNKQENLEAEVLLVAVGRRPYI 289
Query: 678 NNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737
L +KIGL+V++ ++++D + P+I +GDV GPMLAHKAEEEGI E +
Sbjct: 290 AGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKT 349
Query: 738 QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMV 797
+N+N +P V+Y+ PE+A VGKTE+ LK+ I Y +G FPF ANSRA+ +T G V
Sbjct: 350 GHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFV 409
Query: 798 KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
KIL D K++ ILG HIIGP A E+IAEA +A+E+ AS+ED+AR+CH HP+LSEA KEA M
Sbjct: 410 KILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANM 469
Query: 858 SIENRSIN 865
+ +++I+
Sbjct: 470 AAYDKAIH 477
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 719 bits (1858), Expect = 0.0
Identities = 219/481 (45%), Positives = 320/481 (66%), Gaps = 16/481 (3%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+ DV++IG GPGGYVA+I+ AQLGFKT CI++ ALGGTC NVGCIPSKAL
Sbjct: 3 GSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG------ALGGTCLNVGCIPSKAL 56
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +SH + K+SF +G+ NV ++L M+ +K+ + GI LFKKNK+ + G
Sbjct: 57 LHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKG 116
Query: 507 HAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
+ F EI + + K+IIIATGS +S PGV DE I+S+ GAL
Sbjct: 117 YGKFVSP-----SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGAL 171
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ +PKKL +IGAG IGLE+GS+W R+GSEVT++E +S + T+D EI K+ L KQ
Sbjct: 172 ALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQ 231
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ L TK+ + + + V + + +T I D +L++ GR P T+ LN+DK
Sbjct: 232 GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE---ADVVLVSAGRTPFTSGLNLDK 288
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
IG++ ++ I+VN+ TN+ +YAIGDV+ GPMLAHKAEE+G+ E+++G+ +++
Sbjct: 289 IGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDY 348
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
+ +P V+YT PE+ASVGKTE+ +K+ + Y VG FPF+ANSRA+ + G+VKI+++ +
Sbjct: 349 DKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKE 408
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+D+ILG+HI+ P A ELI EA IA+++ ASSEDIAR+CH HP++SEA+KEAAM+ ++ I
Sbjct: 409 TDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPI 468
Query: 865 N 865
+
Sbjct: 469 H 469
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 716 bits (1850), Expect = 0.0
Identities = 211/504 (41%), Positives = 309/504 (61%), Gaps = 18/504 (3%)
Query: 366 LSYDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDN 425
+ + H G + + F +D+IVIG+GPGGYV +I+ AQLG K A +++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRS-- 58
Query: 426 EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNII 485
GGTC NVGCIPSKALL S F ++ G+ N LNLQKM+ K+ +
Sbjct: 59 ----TYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQKMMAHKDATV 114
Query: 486 KKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSK 543
K N G+ FLFKKNKI F G G+ ++ + N+ ++ + AK ++IATGS
Sbjct: 115 KSNVDGVSFLFKKNKIDGFQGTGKVLGQ-----GKVSVTNEKGEEQVLEAKNVVIATGSD 169
Query: 544 ARSFPGVK--FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
PGV+ FDE I+S+ GAL + VP + ++G GVIGLE+GS+W RLG++VT++E
Sbjct: 170 VAGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEF 229
Query: 602 SSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT 661
L +D E+AK+ +L KQG++ L K+ + + + + T +
Sbjct: 230 LDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLD- 288
Query: 662 SIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLA 721
+ +LIA GR P+T+ L + K G+ ++ + ++ + +T+I +YAIGDVVRGPMLA
Sbjct: 289 --AEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLA 346
Query: 722 HKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF 781
HKAE+EG+ VAE I+GQ +N++ +P V+YT PE+ASVGKTE+ LK ++Y +G FPF
Sbjct: 347 HKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPF 406
Query: 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARI 841
AN RAR + +T G VKIL+D ++D +LG HIIG A E+I E + +EF SSED+ R
Sbjct: 407 TANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRT 466
Query: 842 CHVHPSLSEAMKEAAMSIENRSIN 865
CH HP++SEA+KEAA+S + I+
Sbjct: 467 CHAHPTMSEAVKEAALSTFFKPIH 490
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 708 bits (1830), Expect = 0.0
Identities = 198/475 (41%), Positives = 286/475 (60%), Gaps = 22/475 (4%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D++VIGAGPGGYVA+IR AQLG K +++ K ALGGTC VGCIPSKALL+T+
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEK------ALGGTCLRVGCIPSKALLETT 55
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
K G + V L+L ++ K+ +++ N G+ FLFKKN I G A F
Sbjct: 56 ERIYEAKKGLL--GAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARF 113
Query: 511 TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP 570
+ ++ + E + A+YI+IATGS P + D ++++ AL VP
Sbjct: 114 LSE-----RKVLVEET-GEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVP 167
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIIL 630
K+L ++G GVIGLE+G +W RLG+EV +LE L T+D E+++ A + KQGL I
Sbjct: 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRT 227
Query: 631 NTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690
++ + + + D++L+A+GR P T L+++ GL +
Sbjct: 228 GVRVTAVVPEAKGARVELEGGEVLE--------ADRVLVAVGRRPYTEGLSLENAGLSTD 279
Query: 691 ENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFV 750
E I V+++ T +P+IYAIGDVVRGPMLAHKA EEGI EH+ +++ A+P V
Sbjct: 280 ERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSV 339
Query: 751 IYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILG 810
+YT PEIA+VG TE+ LK I Y VG FP+ A+ RAR +GET G +K+L+ K+D ILG
Sbjct: 340 VYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILG 399
Query: 811 IHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
+H IG +++AEA +A+ F+AS+ED+ R H HPSLSE +KEAA++ R I+
Sbjct: 400 VHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAWERPIH 454
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 708 bits (1830), Expect = 0.0
Identities = 217/482 (45%), Positives = 312/482 (64%), Gaps = 20/482 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
+DV+VIG GPGGYVASI+ AQLG KTAC+++ ALGGTC NVGCIPSKALL
Sbjct: 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRG------ALGGTCLNVGCIPSKALLHA 55
Query: 450 SHSFENVKNSFFEYGINT-QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+H + + +F YG+ + VT++ KM ++K +K G+ +LFKKNK+ ++ G
Sbjct: 56 THLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEG 115
Query: 509 IFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F H I++ +E + K IIATGS+ P + FDE ++LS+ GAL +
Sbjct: 116 SFETA-----HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALAL 170
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK-QG 625
VPK + +IG GVIGLE+GS+W RLG+EVT++E + T+DE++ L K +
Sbjct: 171 PRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEK 230
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ + +TK+ N ++V + K N K E +T + LL+++GR P T L +DKI
Sbjct: 231 MKFMTSTKVVGGTNNGDSVSLEVEGK--NGKRETVT--CEALLVSVGRRPFTGGLGLDKI 286
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVAEHISGQKHSINF 744
+ NE F+ + D+ ET+IP++YAIGDVV +GPMLAHKAE+EG+ AE ++G+ +N+
Sbjct: 287 NVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNY 346
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
+P VIYT PE+ASVGK+E LKK ++Y VG FPF ANSRA+ + G VK+L D
Sbjct: 347 GVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKA 406
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+D ILG+HI+ A ELI EA +A+E+ ASSED+ R CH HP++SEA+KEA M++ ++I
Sbjct: 407 TDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALFAKTI 466
Query: 865 NY 866
N+
Sbjct: 467 NF 468
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 702 bits (1815), Expect = 0.0
Identities = 223/483 (46%), Positives = 308/483 (63%), Gaps = 20/483 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
+ DV VIG+GPGGYVA+I+ AQLGFKT CI++ + LGGTC NVGCIPSKALL
Sbjct: 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNE------TLGGTCLNVGCIPSKALLNN 59
Query: 450 SHSFENVKNSFF-EYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
SH + + F GI V LNL KM+E+K+ +K GI LFK+NK+ +G+
Sbjct: 60 SHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYG 119
Query: 509 IFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
TGK +++ + I K I+IATGS+ FPG+ DE+ I+S+ GAL +
Sbjct: 120 KITGK-----NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSL 174
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQG 625
VP+K+ +IGAGVIG+E+GS+W+RLG++VT +E + +D EI+K +L KQG
Sbjct: 175 KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234
Query: 626 LNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
LNTK+ + + ++ S I D LL+ IGR P T NL +++
Sbjct: 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVIT---CDVLLVCIGRRPFTKNLGLEE 291
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
+G++++ I VN +T IPNIYAIGDVV GPMLAHKAE+EGI+ E ++G I++
Sbjct: 292 LGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDY 351
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
N +P VIYT PE+A VGK+E+ LK+ I Y VG FPF ANSRA+ +T GMVKIL
Sbjct: 352 NCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKS 411
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI-ENRS 863
+D +LG HI+GP A E++ EA +A+E+ AS EDIAR+CH HP+LSEA +EA ++ +S
Sbjct: 412 TDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKS 471
Query: 864 INY 866
IN+
Sbjct: 472 INF 474
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 695 bits (1795), Expect = 0.0
Identities = 155/484 (32%), Positives = 241/484 (49%), Gaps = 19/484 (3%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+DV+V+G GPGGY A+ A G K A ++ +K LGG C NVGCIPSKALL
Sbjct: 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK------TLGGVCLNVGCIPSKALLH 58
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+ + V++ GI L++ + K+ ++ + G+ + K K+ G
Sbjct: 59 NAAVIDEVRH-LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDG 117
Query: 509 IFTGK-------IQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
F + +E K+ + K IIA GS+ P + D I+ +
Sbjct: 118 QFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPR-IIDSS 176
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
GAL + VP KL IIG G+IGLE+G+++ LGS + ++EM + D ++ K
Sbjct: 177 GALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQN 236
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
+ NI++NTK ++ ++ V + + +D +L+A GR PN ++
Sbjct: 237 EYRFDNIMVNTKTVAVEPKEDGVYVTFEGA----NAPKEPQRYDAVLVAAGRAPNGKLIS 292
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS 741
+K G+ V + FI V+ TN+P+IYAIGD+V PMLAHKA EG + AE+ +G K
Sbjct: 293 AEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAY 352
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
+ +P V YT PE+A VG+TE K FP+ A+ RA G K++
Sbjct: 353 FDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIF 412
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIEN 861
D ++ I+G I+GP ++I E +AIE + DI + H HP+L E++ AA
Sbjct: 413 DAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALG 472
Query: 862 RSIN 865
+
Sbjct: 473 TCTD 476
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 685 bits (1769), Expect = 0.0
Identities = 185/468 (39%), Positives = 273/468 (58%), Gaps = 20/468 (4%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+ +V+GAGPGGYVA+IR AQLG K +++ LGG C NVGCIPSKAL+ S
Sbjct: 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-------NLGGVCLNVGCIPSKALISAS 56
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
H +E K+ E GI +NVT++ K+ E K +++KK G+ L K NK++ G A F
Sbjct: 57 HRYEQAKH-SEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF 115
Query: 511 TGKIQNNFHEIQIINKT-KETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV 569
+ ++++N +T T K IIATGS+ P KF IL + GAL + V
Sbjct: 116 VDA-----NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNR-ILDSTGALNLGEV 169
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
PK L +IG G IG+E+G+ + G++VTILE + L+ ++++A L K+G+ ++
Sbjct: 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVV 229
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689
N + ++ V + Y +T+ I D +L+ +GR PNT+ L +++IG+K+
Sbjct: 230 TNALAKGAEEREDGVTVTYEANG---ETKTID--ADYVLVTVGRRPNTDELGLEQIGIKM 284
Query: 690 NENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPF 749
I V+ C T++PNI+AIGD+V GP LAHKA EG + AE I+G ++++ A+P
Sbjct: 285 TNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPA 344
Query: 750 VIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEIL 809
V+++ PE ASVG EQ K I FPF AN RA L +T G +K++ + I+
Sbjct: 345 VVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVII 404
Query: 810 GIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
G IIGP AS++IAE +AIE ++EDIA H HP+L E EAA
Sbjct: 405 GAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAE 452
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 683 bits (1765), Expect = 0.0
Identities = 182/484 (37%), Positives = 278/484 (57%), Gaps = 25/484 (5%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP 442
M+ K +D+IVIG GPGGY A+IR AQLG K ++ +GG C NVGCIP
Sbjct: 1 MT--PMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAG-------EVGGVCLNVGCIP 51
Query: 443 SKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
+KALL + + ++K +G+ L+L+K+ ++ ++KK G+ L K N ++
Sbjct: 52 TKALLHAAETLHHLKV-AEGFGL-KAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVE 109
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
G A G E+++ E AK +I+ATGS+ G F E+ + +
Sbjct: 110 LLRGFARLVGP-----KEVEV---GGERYGAKSLILATGSEPLELKGFPFGED-VWDSTR 160
Query: 563 ALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
AL++ +PK+L +IG G +GLE+G ++RRLG+EVT++E L D E A L
Sbjct: 161 ALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRAL 220
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
K+G+ + TK + K+ + + + E + DK+L+A+GR P T L
Sbjct: 221 EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGG-EGEEVV--VDKVLVAVGRKPRTEGLG 277
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS 741
++K G+KV+E FI VN ET++P +YAIGD R P+LAHKA EG++ AE+ +G+ +
Sbjct: 278 LEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKDSA 337
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
++ +P V+YT PE A VG TE+ K+ VG FP A+ RA LG GMVK++
Sbjct: 338 FDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVG 396
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIEN 861
D ++D +LG+ I+GP A ELIAEA +A+E A+ D+A H HP+LSE++ EAA +
Sbjct: 397 DEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEAFHK 456
Query: 862 RSIN 865
++I+
Sbjct: 457 QAIH 460
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 677 bits (1750), Expect = 0.0
Identities = 154/479 (32%), Positives = 252/479 (52%), Gaps = 27/479 (5%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+++IG GPGGYVA+IR QLG T + E ALGGTC N+GCIPSKAL+
Sbjct: 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLV-------EGQALGGTCLNIGCIPSKALIH 56
Query: 449 TSHSFENVKNS--FFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
+ F GI+ + L++ + + K+ I+ + +G+ L KK+ +K HG
Sbjct: 57 VAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHG 116
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A ++++ + I +++++ATGS + P + ++S+ AL
Sbjct: 117 WAKVLDG-----KQVEV---DGQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAP 167
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+P+ L ++G G IGLE+G +R+LG++V+++E L T D E+ L K G+
Sbjct: 168 KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI 227
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ L + + L+ K ++ E D++L+A+GR P T N++ +
Sbjct: 228 ALHLGHSVEGYE---NGCLLANDGKGGQLRLE-----ADRVLVAVGRRPRTKGFNLECLD 279
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK+N I +++ C+T++ N++AIGDV PMLAH+A +G MVAE I+G+ A
Sbjct: 280 LKMNGA-AIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAA 338
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+ V +T PE+ VGKT + + + V FPF AN RA L SG V++++ +
Sbjct: 339 IAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNH 398
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
ILG +G SEL ++E A ED+A H HP+L EA++EAA+ +++
Sbjct: 399 LILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALH 457
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 670 bits (1732), Expect = 0.0
Identities = 164/480 (34%), Positives = 251/480 (52%), Gaps = 19/480 (3%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
++DV+V+GAGPGGYVA+IR AQLG TA + E GG C NVGCIPSKALL+
Sbjct: 2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIV-------EPKYWGGVCLNVGCIPSKALLR 54
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+ +GI + VT + +R + + +G+ FL KKNKI HG+
Sbjct: 55 NAELVHIFTKDAKAFGI-SGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYG 113
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMIN 568
F N + + + E++T IIATGS R PG N +++ + +
Sbjct: 114 TFADA---NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VVTYEEQILSRE 169
Query: 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628
+PK + I GAG IG+E G + + G +VTI+E L D +++K+ K G+ I
Sbjct: 170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTI 229
Query: 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
+ TK+ I V + + + + +K+L AIG PN +DK G+
Sbjct: 230 LTATKVESIADGGSQVTVTVTKDG---VAQELK--AEKVLQAIGFAPNVEGYGLDKAGVA 284
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSINFNA 746
+ + I V+D TN+ +IYAIGDV LAH AE +G++ AE I+G + +
Sbjct: 285 LTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRM 344
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
LP + P +AS G TEQ + V FPF AN++A +G+ SG VK+++D K
Sbjct: 345 LPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHG 404
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
E+LG H++G +EL+ E +A + ++ ++AR H HP++SEA++E + IN+
Sbjct: 405 ELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLVGHMINF 464
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 635 bits (1641), Expect = 0.0
Identities = 104/474 (21%), Positives = 210/474 (44%), Gaps = 17/474 (3%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
++++G GP GY A++ A +T + + +GG C+PSK + ++
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVI----DCDGIGGAAVLDDCVPSKTFIAST 58
Query: 451 HSFENVKNS-FFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI 509
++ + + I+ + ++L ++ R + ++ I ++ G
Sbjct: 59 GLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGE 118
Query: 510 FTG-KIQNNFHEIQII--NKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
H I+ + + A +++ATG+ R P + D IL+ + ++
Sbjct: 119 LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDL 178
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+P L ++G+GV G E + LG VT++ + L D + A ++G+
Sbjct: 179 DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGV 238
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ N + + VL+ ++ + L+ IG +PNT+ L ++++G
Sbjct: 239 RLFKNARAASVTRTGAGVLVTMTDG------RTVE--GSHALMTIGSVPNTSGLGLERVG 290
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFN 745
+++ N++ V+ T IYA GD LA A +G + H G+ I
Sbjct: 291 IQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLR 350
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+ ++T PEIA+VG + + +++ + P N+RA++ G VKI +
Sbjct: 351 TVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRST 410
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859
++G ++ P+ASELI +A++ R + ++A+ V+PSLS ++ EAA +
Sbjct: 411 GVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRL 464
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 632 bits (1633), Expect = 0.0
Identities = 116/486 (23%), Positives = 219/486 (45%), Gaps = 35/486 (7%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
N DV +IG G G A + K I E A G TC VGC+PSK L+
Sbjct: 7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLI-------EGGAYGTTCARVGCMPSKLLIA 59
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLER----KNNIIKKNNSGILFLFKKNKIKFF 504
+ + + +GI +++N + +++R ++ + + +++KI+
Sbjct: 60 AADASYHASQ-TDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIR-- 116
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
G A F + H +Q+ + AK I+IATGS+ + + +L+N
Sbjct: 117 -GFAKFLDE-----HTLQV--DDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLF 168
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
E+ ++PK + + G GVIGLE+G RLG V + S + N DEE+ + A N++
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE 228
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
++ ++ V + Y +KS TE F +L A GR N + L ++
Sbjct: 229 F-YFDAKARVISTIEKEDAVEVIYFDKSGQKTTES----FQYVLAATGRKANVDKLGLEN 283
Query: 685 IGLKVNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-- 741
+++++ N + ++ +T++ +I+ GD L H+A ++G + +
Sbjct: 284 TSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQ 343
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKH-----NISYNVGIFPFLANSRARILGETSGM 796
A V++T P++ASVG + + ++ +Y VG F R+R++G+ G+
Sbjct: 344 GQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGL 403
Query: 797 VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+ + +D S E LG + GP A + A + + + + + + HP + E ++ A
Sbjct: 404 LNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTAL 463
Query: 857 MSIENR 862
+ +
Sbjct: 464 RDAQQK 469
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 628 bits (1623), Expect = 0.0
Identities = 121/488 (24%), Positives = 221/488 (45%), Gaps = 36/488 (7%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+ +DV+VIGAG GY + RLA+ + D LGG C GC+PSK +
Sbjct: 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG------ELGGNCLYSGCVPSKTV 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIK-KNNSGILFLFKKNKIKFFH 505
+ + + I + L+ + +RK+ + + + + + + F+
Sbjct: 55 REVIQTAWRLT------NIANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYK 108
Query: 506 GHAIFTGKIQNNFHEIQI--INKTKETITAKYIIIATGSKARS--FPGVKFDENLILSNK 561
G+ + + + +Y+IIA+G++ PGV++
Sbjct: 109 GYVKIKDP-----THVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFG 163
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV-DEEIAKKAFHL 620
+P+ + IIGAG IGLEI SI+R +G + I+EM L T+ D++I L
Sbjct: 164 YKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNT---L 220
Query: 621 LNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679
L+ LNI N+ + ++K K++ + YS K + + I + +++A GR P
Sbjct: 221 LSILKLNIKFNSPVTEVKKIKDDEYEVIYSTK--DGSKKSIF--TNSVVLAAGRRPVIPE 276
Query: 680 LNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739
+IGL +++ I+V++ +TNIPN++A GD H A I A +I
Sbjct: 277 -GAREIGLSISKT-GIVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANG 334
Query: 740 HSINF---NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGM 796
+++ ++P IYT P ++ VG +K I + + A+I G+ G+
Sbjct: 335 MPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGV 394
Query: 797 VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+K++ + S ++G +IG + LI E +A+ + +++ +A HPS +E + A
Sbjct: 395 LKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTA 454
Query: 857 MSIENRSI 864
+
Sbjct: 455 RKVIEGHH 462
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 613 bits (1582), Expect = 0.0
Identities = 89/511 (17%), Positives = 190/511 (37%), Gaps = 39/511 (7%)
Query: 375 GREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
V+ + + +D I IG G G S L +G + +D W LGG+
Sbjct: 28 DGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP------FLGGS 81
Query: 435 CTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF 494
C + C+P + + +Y + K + + GI+
Sbjct: 82 CPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMN 141
Query: 495 LFKKNKI---KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVK 551
K ++ + A H ++ + AK +I+A G+ +
Sbjct: 142 FQSKEQLNLEYILNCPAKVIDN-----HTVEA---AGKVFKAKNLILAVGAGPGTLDVPG 193
Query: 552 FDENLIL-SNKGALEMINVP-KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV 609
+ + E+ P + ++G +E G + G +L +
Sbjct: 194 VNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK 253
Query: 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLI 669
D E + +QG+ II + + I+ + + + N + I D + +
Sbjct: 254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIE---TDFVFL 310
Query: 670 AIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGI 729
+G P + L +GL + ++VN+ +T++PN+YA+GD++ GPM KA + G
Sbjct: 311 GLGEQPRSAELA-KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGC 369
Query: 730 MVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF-------- 781
A ++ G+K S P ++T E++ +G E+ + P
Sbjct: 370 YAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNV 429
Query: 782 --------LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRA 833
+ + + SG KI+ D K+ ++LG H +G A + + I+
Sbjct: 430 ALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGL 489
Query: 834 SSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+ +++ + + + + ++ + + ++++
Sbjct: 490 TVDELGDMDELFLNPTHFIQLSRLRAGSKNL 520
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 608 bits (1570), Expect = 0.0
Identities = 120/476 (25%), Positives = 218/476 (45%), Gaps = 22/476 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M V VIG+G A+++ + G + I E +GGTC NVGC+PSK +
Sbjct: 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLI-------ERGTIGGTCVNVGCVPSKIM 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG--ILFLFKKNKIKFF 504
++ +H + S F+ GI T++ K+L ++ + + L I
Sbjct: 54 IRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVV 113
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
HG A F +++ + + ++ATG+ P E+ ++ AL
Sbjct: 114 HGEARFKDD---QSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEAL 170
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+P++L +IG+ V+ LE+ + RLGS+VT+L ++ D I + +
Sbjct: 171 ASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNT-LFFREDPAIGEAVTAAFRAE 229
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ ++ +T+ + ++ ++ DKLL+A GR PNT +L +D
Sbjct: 230 GIEVLEHTQASQVAHMDGEFVLTTTHG---------ELRADKLLVATGRTPNTRSLALDA 280
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
G+ VN I+++ T+ PNIYA GD P + A G A +++G +++
Sbjct: 281 AGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDL 340
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
A+P V++T P++A+VG +E I + RA +T G +K++ +
Sbjct: 341 TAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEG 400
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860
S ++G+ + P A ELI A +AI R + +++A + ++ E +K AA +
Sbjct: 401 SHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFN 456
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 478 bits (1233), Expect = e-161
Identities = 130/515 (25%), Positives = 239/515 (46%), Gaps = 71/515 (13%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D+IVIG G GG A+ R A+ K A +++ + LGGTC NVGC+P K + +
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-------LGGTCVNVGCVPKKIMFNAA 55
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
+ ++N YG +T + NL ++ER++ I++ N+ K+K+ + G A F
Sbjct: 56 SVHDILEN-SRHYGFDT-KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF 113
Query: 511 TGK------IQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
+ + + +E + + I+IA G+K FP VK EN I S+
Sbjct: 114 LSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV-FPPVKGIENTISSD-EFF 171
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ KK+ I+G+G I +E+ ++ +RLG + I + L DE + + + K
Sbjct: 172 NI-KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKN 230
Query: 625 GLNIILNTKIHDI-KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNID 683
+NI+ + +I K++ +N+ I+ S+ FD ++ +GR P+T NL ++
Sbjct: 231 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEH-------FDHVIYCVGRSPDTENLKLE 283
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGD------------------------------ 713
K+ ++ N NN+I+V++N T++ NIYA+GD
Sbjct: 284 KLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKEN 342
Query: 714 ----VVRGPMLAHKAEEEGIMVAEHISGQKHS-INFNALPFVIYTFPEIASVGKTEQYLK 768
+ L A G ++A+ + +K N+ +P VI++ P I ++G +E+
Sbjct: 343 VTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAI 402
Query: 769 ----KHNISYNVGIFPFL--ANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELI 822
K N+ F L + + +K++ K + I G+HIIG A E++
Sbjct: 403 QIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIV 462
Query: 823 AEAVIAIEFRASSEDIARICHVHPSLSEA---MKE 854
+A++ A+ +D +HP+ +E ++
Sbjct: 463 QGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQP 497
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 467 bits (1205), Expect = e-158
Identities = 127/411 (30%), Positives = 213/411 (51%), Gaps = 35/411 (8%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA E K+P + E I E ++ W K G+ V ++ L +++ DK ++E+P+P G + +I
Sbjct: 1 MA-FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEI 59
Query: 61 IITDGSIVTSNQVIALIDTD-----------------------------ISKLSSKTEIK 91
++ +G++ T Q + +D + ++
Sbjct: 60 LVPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAA 119
Query: 92 NKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK-VLSSIKNINEEK 150
+ N I MPS +K + ++I + GTGK+GR++KED+ + K
Sbjct: 120 EAEAGPNRRVIAMPSVRKYAREKGVDIRLVQ-GTGKNGRVLKEDIDAFLAGGAKPAPAAA 178
Query: 151 QEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDL 210
+EK P + E MS +R IA+ ++ S+ + +T +E ++ ++
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAH 238
Query: 211 RLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAIS 268
R K+K + +KL F+ + VKA+VSAL++YP++N S+D II YY+IGIA
Sbjct: 239 RKKFKAIAAE-KGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAAD 297
Query: 269 SSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLS 328
+ RGL+VP++++AD I + ++INE KA+D KL P EM G + TI+N G G
Sbjct: 298 TDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF 357
Query: 329 TPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
TP+IN P+ AILG+ I ++ IV + +V P+ +LS+DHR+IDG A
Sbjct: 358 TPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQ 408
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 427 bits (1100), Expect = e-141
Identities = 134/489 (27%), Positives = 230/489 (47%), Gaps = 23/489 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID--EWKDNEENFALGGTCTNVGCIPSK 444
++FD++VIG G GG + AQLG K A D E + LGGTC NVGCIP K
Sbjct: 3 GQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKK 62
Query: 445 ALLQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q + ++++ YG Q V N + M E N +K N G + K+K+
Sbjct: 63 LMHQAALLGGMIRDAH-HYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKY 121
Query: 504 FHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
F+ A F + H ++ ++K ++A++I+IATG + R VK +++
Sbjct: 122 FNIKASFVDE-----HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSD 176
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
+ P K ++GA + LE +G + T++ M S L D++++ +
Sbjct: 177 DIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVM-MRSIPLRGFDQQMSSLVTEHM 235
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
G + IK N L + K + T FD +L AIGR+P T LN
Sbjct: 236 ESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGT--FDTVLWAIGRVPETRTLN 293
Query: 682 IDKIGLKVNE-NNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISGQK 739
++K G+ N N IIV+ T++P+IYAIGDV G P L A + G ++A+ + G+
Sbjct: 294 LEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS 353
Query: 740 HS-INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETS---G 795
+ ++++ +P ++T E VG +E+ + +V ++ + +
Sbjct: 354 STLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQC 413
Query: 796 MVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
+K++ + + +LG+H +GP A E+ + I+ AS + + +HP+ SE +
Sbjct: 414 YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEV-- 471
Query: 855 AAMSIENRS 863
+ I RS
Sbjct: 472 VKLHISKRS 480
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 419 bits (1080), Expect = e-138
Identities = 112/479 (23%), Positives = 222/479 (46%), Gaps = 27/479 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+ +FD+ VIG+G GG A+ LG + A +E++ +GGTC GC+P K
Sbjct: 23 GSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-------IGGTCVIRGCVPKKLY 75
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
S + S +G + N +K++ KN I + + + + +
Sbjct: 76 FYASQYAQEFSKSI-GFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES 134
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A+F + H +++ E I+A+ I+IATG+K S +K + + SN ++
Sbjct: 135 RAVFVDE-----HTLELSVT-GERISAEKILIATGAKIVSNSAIKGSDLCLTSN-EIFDL 187
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+PK + I+G G IG+E +I+ LG + T+L L D ++ + + +G+
Sbjct: 188 EKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGI 247
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+II + ++ + + +N T D++++A GR+PNT L +++ G
Sbjct: 248 SIIYEATVSQVQSTENCYNVVLTNGQTIC--------ADRVMLATGRVPNTTGLGLERAG 299
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHSINFN 745
+KVNE ++V++ TN+ +I+A+GDV L A + + ++ + +++
Sbjct: 300 VKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYD 359
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+ +++ PEI +VG +E+ + F +K++ D +S
Sbjct: 360 LITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGES 419
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA---MKEAAMSIEN 861
++G H++G A E+ I+++ + + + + VHP++SE M + + EN
Sbjct: 420 RIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYKPSYVYEN 478
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 418 bits (1076), Expect = e-138
Identities = 127/469 (27%), Positives = 222/469 (47%), Gaps = 30/469 (6%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M K++D I IG G GG + R A G K A I+ + LGGTC NVGC+P K +
Sbjct: 1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-------LGGTCVNVGCVPKKVM 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
+ E + +YG +T N + ++ + I + ++ + KN + G
Sbjct: 54 WHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG 113
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A F +++ ETITA +I+IATG + S P + E I S+ G +
Sbjct: 114 FARFVDA-----KTLEV---NGETITADHILIATGGRP-SHPDIPGVEYGIDSD-GFFAL 163
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+P+++ ++GAG IG+E+G + LG++ + EM L + D I++ ++N +G
Sbjct: 164 PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP 223
Query: 627 NIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ N + N + L + + + D L+ AIGR P +N+N++
Sbjct: 224 QLHTNAIPKAVVKNTDGSLTLELEDGRSET--------VDCLIWAIGREPANDNINLEAA 275
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS--IN 743
G+K NE +I+V+ TNI IYA+GD L A G ++E + K ++
Sbjct: 276 GVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 335
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PFLANSRARILGETSGMVKILS 801
++ +P V+++ P I +VG TE ++ V ++ F A A +K++
Sbjct: 336 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVC 395
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
++I+GIH IG E++ +A++ A+ +D +HP+ +E
Sbjct: 396 VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 L mixed
beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP:
c.43.1.1 PDB: 1e2o_A 1c4t_A
Length = 233
Score = 402 bits (1036), Expect = e-136
Identities = 130/216 (60%), Positives = 176/216 (81%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
+R E+ VPM+RLR +AERLL+++ ++A+LTTFNE+NM+ I+DLR +Y + FEK H ++L
Sbjct: 1 ARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRL 60
Query: 227 GFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286
GFMSF+VKAVV ALK+YP +NAS+DG++++YH Y+D+ +A+S+ RGLV P+LR+ DT+ +
Sbjct: 61 GFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGM 120
Query: 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIK 346
ADIEKKI E K +D KL E+++GG FTI+NGGVFGS++STPIINPPQSAILG+HAIK
Sbjct: 121 ADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIK 180
Query: 347 KRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSL 382
R + N V I P+ Y ALSYDHR+IDGRE+V L
Sbjct: 181 DRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFL 216
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 411 bits (1059), Expect = e-135
Identities = 112/483 (23%), Positives = 211/483 (43%), Gaps = 29/483 (6%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP 442
MS ++D+ VIG G GG + A LG K A +E++ GGTC GC+P
Sbjct: 1 MS---AFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-------YGGTCVIRGCVP 50
Query: 443 SKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
K + S E+ +++ +G + K++ K I + +
Sbjct: 51 KKLYVYASQFAEHFEDAA-GFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAE 109
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
A G + ++++ +T+TA+ I+IA G + E I SN
Sbjct: 110 ILDTRAELAGP-----NTVKLLAS-GKTVTAERIVIAVGGHPSPHDALPGHELCITSN-E 162
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
A ++ +P+ + I G G I +E +I+ LG + T++ L+ D+++ + +
Sbjct: 163 AFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAME 222
Query: 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682
++G+ I+ I + + + + + K + D++++A+GR+PNTN L +
Sbjct: 223 EKGIRILCEDIIQSVSADADGRRVATTMKHG-------EIVADQVMLALGRMPNTNGLGL 275
Query: 683 DKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHS 741
+ G++ NE IIV+ T+ P IYA+GDV L A E + E S
Sbjct: 276 EAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTS 335
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
+ + + +++ PEI +VG TE+ + V F + ++K++
Sbjct: 336 PDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVV 395
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA---MKEAAMS 858
+ +++G HI+G A E+ I++ + +D R VHP+ +E M + +
Sbjct: 396 NAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYR 455
Query: 859 IEN 861
+ N
Sbjct: 456 VRN 458
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 415 bits (1070), Expect = e-135
Identities = 122/493 (24%), Positives = 221/493 (44%), Gaps = 27/493 (5%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACID--EWKDNEENFALGGTCTNVGCIPSKA 445
++D+IVIG G GG A A+ G KTA +D E + LGGTC NVGCIP K
Sbjct: 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKL 164
Query: 446 LLQTSHSFENVKNSFFEYG--INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q ++++ +G ++ ++ N M+E + I N G + N++ +
Sbjct: 165 MHQAGLLSHALEDAE-HFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTY 223
Query: 504 FHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
+ HE+QI +K TIT II+ATG + +P + +++
Sbjct: 224 LNAKGRLISP-----HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYGITSD 277
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
+ P K +IGA + LE LG +VT++ + S L D+++A+K +
Sbjct: 278 DLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYM 336
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKT-----EIITSIFDKLLIAIGRIPN 676
G+ +IK K N VK + F+ ++ A+GR P
Sbjct: 337 ENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ 396
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI 735
+ + + +G+K+++N ++ D+ +T + N+YAIGD+ G P L A + G +A +
Sbjct: 397 LSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRL 456
Query: 736 -SGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGI----FPFLANSRARIL 790
+G +++ + ++T E + G +E+ + ++ + F L + A
Sbjct: 457 FAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHRE 516
Query: 791 GETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
M + + +LG+H++GP A E+ +AI+ A+ D R +HP+ SE
Sbjct: 517 DNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSE 576
Query: 851 AMKEAAMSIENRS 863
+ + +S
Sbjct: 577 TF--TTLHVTKKS 587
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 406 bits (1046), Expect = e-133
Identities = 123/471 (26%), Positives = 226/471 (47%), Gaps = 22/471 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
++D +VIG G GG ++ R A+LG + A ++ K LGGTC NVGC+P K +
Sbjct: 17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-------LGGTCVNVGCVPKKVM 69
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
T+ E + + +YG + N + + E+++ + + N+ K+ I+ G
Sbjct: 70 WNTAVHSEFMHDHA-DYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG 128
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFD--ENLILSNKGAL 564
HA FT + I + + TA +I+IATG + + I S+ G
Sbjct: 129 HAAFTSD-----PKPTI-EVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSD-GFF 181
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
++ +P + I+GAG I +E+ I LGS+ +++ L + D I+ L
Sbjct: 182 QLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENA 241
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNID 683
G+ ++ +++ ++K + ++ + D LL AIGR+PNT +L+++
Sbjct: 242 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLN 301
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-- 741
K+G++ ++ IIV++ TN+ IYA+GDV +L A G +A + K
Sbjct: 302 KLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSK 361
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PFLANSRARILGETSGMVKI 799
+++N +P V+++ P I +VG TE NV + F A +T ++K+
Sbjct: 362 LDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKM 421
Query: 800 LSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
+ K ++++GIH+ G E++ +A++ A+ D +HP+ SE
Sbjct: 422 VCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSE 472
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 406 bits (1046), Expect = e-133
Identities = 125/489 (25%), Positives = 225/489 (46%), Gaps = 28/489 (5%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK---DNEENFALGGTCTNVGCIPSK 444
+ ++D+IVIG G G + G + AC+D K + +GGTC NVGCIP K
Sbjct: 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 66
Query: 445 ALLQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q S E V + YG N + + K+++ N IK N + K+++
Sbjct: 67 LMHQASLLGEAVHEAA-AYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEY 125
Query: 504 FHGHAIFTGKIQNNFHEIQIINK-TKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
+G F H + K + TITA+ +IA G + R +P + +++
Sbjct: 126 INGLGSFVDS-----HTLLAKLKSGERTITAQTFVIAVGGRPR-YPDIPGAVEYGITSDD 179
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
+ P K ++GAG IGLE + LG E T++ + S L D+++A+ +
Sbjct: 180 LFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQMAELVAASME 238
Query: 623 KQGLNIILNTKIHDI-KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
++G+ + T + K + +L+ Y N T ++E + +D +L AIGR ++LN
Sbjct: 239 ERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDV---YDTVLWAIGRKGLVDDLN 295
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI-SGQK 739
+ G+ V + I V+ TN+ NIYA+GD++ G P L A G ++A + G
Sbjct: 296 LPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGST 354
Query: 740 HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGI----FPFLANSRARILGETSG 795
+++ + ++T E A VG +E+ K + + + + +
Sbjct: 355 QRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQ-KSVRYC 413
Query: 796 MVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
+K +++ D+ + G+H IGP+A E+I A++ + + +HP+ +E
Sbjct: 414 YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTR 473
Query: 855 AAMSIENRS 863
++I RS
Sbjct: 474 --LAITKRS 480
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 407 bits (1049), Expect = e-133
Identities = 121/492 (24%), Positives = 229/492 (46%), Gaps = 27/492 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID--EWKDNEENFALGGTCTNVGCIPSK 444
+ ++D+I+IG G GG A+ AQ G K +D + LGGTC NVGCIP K
Sbjct: 29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 88
Query: 445 ALLQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q + + +++S YG + V + +M+E N I N G ++ K+ +
Sbjct: 89 LMHQAALLGQALQDSR-NYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVY 147
Query: 504 FHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
+ + F G H I+ N ++ +A+ +IATG + R + G+ D+ +S+
Sbjct: 148 ENAYGQFIGP-----HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYCISSD 201
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
+ P K ++GA + LE +G +VT++ + S L D+++A K +
Sbjct: 202 DLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHM 260
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKT-EIITSIFDKLLIAIGRIPNTNNL 680
+ G+ I ++ + + + + EII ++ +++AIGR T +
Sbjct: 261 EEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKI 320
Query: 681 NIDKIGLKVNENN-FIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI-SG 737
++ +G+K+NE I V D +TN+P IYAIGD++ L A + G ++A+ + +G
Sbjct: 321 GLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380
Query: 738 QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF-----PFLANSRARILGE 792
++ +P ++T E + G +E+ + N+ ++ P +R
Sbjct: 381 STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DN 438
Query: 793 TSGMVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA 851
KI+ + K +E ++G H++GP A E+ A++ + + + +HP +E
Sbjct: 439 NKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 498
Query: 852 MKEAAMSIENRS 863
+S+ RS
Sbjct: 499 F--TTLSVTKRS 508
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 404 bits (1041), Expect = e-133
Identities = 127/494 (25%), Positives = 235/494 (47%), Gaps = 38/494 (7%)
Query: 380 LSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG 439
+ MS K++D +VIG G GG ++ R A G KT ++ LGGTC NVG
Sbjct: 2 VEFMS-TNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-------LGGTCVNVG 53
Query: 440 CIPSKALLQTSHSFENVKNSFFEYGIN------TQNVTLNLQKMLERKNNIIKKNNSGIL 493
C+P K + S V ++ EYG+ +++T N + ++++ + + N
Sbjct: 54 CVPKKVMWYASDLATRVSHAN-EYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQ 112
Query: 494 FLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVK 551
+K K+ G A F +++ + T E +A +I++ATG KA +
Sbjct: 113 KNLEKEKVDVVFGWARFNKD-----GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIP 167
Query: 552 FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDE 611
E S+ G + PKK+ ++GAG IG+E+ ++ LGSE ++ L DE
Sbjct: 168 GFELGTDSD-GFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDE 226
Query: 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAI 671
I K+G+N+ +KI ++ N E + + I D+L+ I
Sbjct: 227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDS---KSIDD--VDELIWTI 281
Query: 672 GRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMV 731
GR + + + +G+K+N ++ II ++ TN+PNIY++GDVV L A G +
Sbjct: 282 GRKSHLG-MGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKL 340
Query: 732 AEHISGQK----HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PFLANS 785
+ + G + +++ +P VI++ PE S+G +E+ + N+ ++ F A
Sbjct: 341 SNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMY 400
Query: 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVH 845
A + ++ KI+ +++++G+HI+G ++E++ +AI+ A+ D +H
Sbjct: 401 YAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIH 460
Query: 846 PSLSEA---MKEAA 856
P+ +E M+ +
Sbjct: 461 PTSAEELVTMRGSH 474
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 398 bits (1024), Expect = e-130
Identities = 122/481 (25%), Positives = 222/481 (46%), Gaps = 30/481 (6%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M ++FD+I IG G GG + + A G + A I+ LGGTC NVGC+P K +
Sbjct: 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-------LGGTCVNVGCVPKKVM 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
SH E V+++ +G+ TL+ +++ ++ I NS ++ I G
Sbjct: 54 WYASHLAEAVRDAP-GFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG 112
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
HA F H I++ + ++A +I+IATG + P + E I S+ G +
Sbjct: 113 HARFVDA-----HTIEV---EGQRLSADHIVIATGGRPI-VPRLPGAELGITSD-GFFAL 162
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
PK++ IIGAG IG+E+ + R GSEVT++ + L D ++ ++ QG+
Sbjct: 163 QQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGI 222
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
L + ++ + + + + + FD ++ A+GR PNT +L ++ G
Sbjct: 223 ETHLEFAVAALERDAQGTTLVAQDGTR-------LEGFDSVIWAVGRAPNTRDLGLEAAG 275
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHS-INF 744
++V N + + TN+P +YA+GD+ L A G +AE + GQ +++
Sbjct: 276 IEVQSNGMVPTDAYQNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDY 335
Query: 745 NALPFVIYTFPEIASVGKTE-QYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDM 803
+ +P V++ P ++ VG +E + ++ V F A +K++
Sbjct: 336 DNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAG 395
Query: 804 KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRS 863
++G+H+IG A E++ +A++ A+ D +HP +E + + R
Sbjct: 396 PEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEEL--VTLKEPVRR 453
Query: 864 I 864
Sbjct: 454 P 454
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 398 bits (1024), Expect = e-130
Identities = 127/498 (25%), Positives = 222/498 (44%), Gaps = 37/498 (7%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWK--DNEENFALGGTCTNVGCIPS 443
M+K FD++VIGAG GG A A L G + A +D ALGGTC NVGC+P
Sbjct: 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPK 63
Query: 444 KALLQTSHSFENVKNSFFEYG--INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK- 500
K ++ + ++++ S +G + +V N +K++ KN + N +F +
Sbjct: 64 KLMVTGAQYMDHLRESA-GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEG 122
Query: 501 IKFFHGHAIFTGKIQNNFHEIQI------INKTKETITAKYIIIATGSKARSFPGVKFDE 554
+ FF G K + + + + KE + A +I++ATGS + P + E
Sbjct: 123 LDFFLGWGSLESK-----NVVVVRETADPKSAVKERLQADHILLATGSWPQ-MPAIPGIE 176
Query: 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDE 611
+ I SN A + P+++ +G G I +E I+ G +VT+ ++ L DE
Sbjct: 177 HCISSN-EAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDE 235
Query: 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIA 670
I ++ L G+ I+ N + +N + + + + T D +++A
Sbjct: 236 TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLD--------VDVVMMA 287
Query: 671 IGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIM 730
IGRIP TN+L + +G+K+ + V++ TN+PNIYAIGD+ ML A EG
Sbjct: 288 IGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAA 347
Query: 731 VAEHI-SGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARI 789
+ + + + + + +++ P I + G E+ K V + F
Sbjct: 348 LVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNIS 407
Query: 790 LGETSGMV-KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSL 848
+ V KI+++ +LG+H++G A E+I + + A D VHP+
Sbjct: 408 GSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTS 467
Query: 849 SEA---MKEAAMSIENRS 863
+E M+ +
Sbjct: 468 AEELCSMRTPSYYYVKGE 485
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 392 bits (1009), Expect = e-128
Identities = 125/496 (25%), Positives = 221/496 (44%), Gaps = 39/496 (7%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWK--DNEENFALGGTCTNVGCIPSK 444
++ +D++VIGAG GG A A L + A ID K ALGGTC NVGC+P K
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60
Query: 445 ALLQTSHSFENVKNSFFEYG--INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK-I 501
++ ++ + ++ S +G ++ ++V N + ++ KN + N +F + +
Sbjct: 61 LMVTGANYMDTIRESA-GFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGL 119
Query: 502 KFFHGHAIFTGKIQNNFHEIQI------INKTKETITAKYIIIATGSKARSFPGVKFDEN 555
F G H + + + ET+ +YI++ATGS + G++ D+
Sbjct: 120 TFHQGFGALQDN-----HTVLVRESADPNSAVLETLDTEYILLATGSWPQ-HLGIEGDDL 173
Query: 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDEE 612
I SN A + PK+ +G G I +E I+ G +V + L D E
Sbjct: 174 CITSN-EAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE 232
Query: 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAI 671
+ K+ L G+N+ + + N + + + + + +D +++AI
Sbjct: 233 LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD--------YDVVMLAI 284
Query: 672 GRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMV 731
GR+P + L ++K G++V +N I V+ +TN+ NIYAIGDV ML A EG
Sbjct: 285 GRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAF 344
Query: 732 AEHI-SGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARIL 790
+ + + + + + + +++ P + G E+ K V F I
Sbjct: 345 VDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHN-IS 403
Query: 791 G--ETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSL 848
G MV+I+++ E+LG+H++G + E+I I ++ A D VHP+
Sbjct: 404 GSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTS 463
Query: 849 SEA---MKEAAMSIEN 861
+E M+ A E
Sbjct: 464 AEELCSMRTPAYFYEK 479
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 382 bits (983), Expect = e-127
Identities = 80/216 (37%), Positives = 130/216 (60%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
+ ++ +P++ +R IA+ + S+ E++ ++ R KD F+KE L
Sbjct: 15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSL 74
Query: 227 GFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286
+ +FF+KAV ALK++P +N++ G+ II H +I IAI++ L VP+++NAD SI
Sbjct: 75 TYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSI 134
Query: 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIK 346
I ++I+E KA++ KL +M GGTFT+++ G FGS+ S IIN PQ+AIL V +I
Sbjct: 135 KGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIV 194
Query: 347 KRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSL 382
KR ++ ++ + +R + LS DHRI+DG A L
Sbjct: 195 KRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFL 230
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 336 bits (863), Expect = e-110
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
EE + M LR I +++ +++ T E+++ S++ + K N K+
Sbjct: 3 PGREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-----ARNRKV 57
Query: 227 GFMSFFVKAVVSALKQYPIINASVDGNN--IIYHKYYDIGIAISSSRGLVVPILRNADTM 284
F + V S LKQYP +NA D I KYY+IGIA+ + GL V ++++AD
Sbjct: 58 TVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRK 117
Query: 285 SIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHA 344
S+ +I +I++ ++A++NKL +E+ TFTI+N G G ++STPIIN P+ AILGVH
Sbjct: 118 SMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHR 177
Query: 345 IKKRVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
I +R R Y +LS DHR+IDG A
Sbjct: 178 ILER--------EGRKYMYLSLSCDHRLIDGAVAT 204
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 324 bits (833), Expect = e-105
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229
+ P+ + +AE++ S E+ ++ LR ++ ++
Sbjct: 14 PDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAA-----PEITPF 68
Query: 230 SFFVKAVVSALKQYPIINASVD----GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMS 285
+ ++ +V ALK I+N++ G + H+ +G ++ RGL+VP++ +A +
Sbjct: 69 ALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKN 128
Query: 286 IADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAI 345
++ ++ E I A++ L P E+ G TFT+SN G G P+IN P++AILG+ AI
Sbjct: 129 TRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAI 188
Query: 346 KKRVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
K R +V VV RP +DHR++DG +
Sbjct: 189 KPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVA 222
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 282 bits (723), Expect = 2e-89
Identities = 73/212 (34%), Positives = 106/212 (50%), Gaps = 3/212 (1%)
Query: 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229
E VPM+RL A L +S N +T F ++ + R+ K EK VKL +
Sbjct: 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKA-GVKLTVL 73
Query: 230 SFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIA 287
+KA LK+ P N+S+ G +I KY IG A+ + GL+VP++RN D S+
Sbjct: 74 PLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLL 133
Query: 288 DIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKK 347
+ + E KA+ KL + M G FTIS+ G G TPI+N P+ AILGV
Sbjct: 134 QLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASM 193
Query: 348 RVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
+ + + R + +LSYD R+I+G A
Sbjct: 194 QPVWDGKAFQPRLMLPLSLSYDCRVINGAAAA 225
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 282 bits (724), Expect = 3e-89
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 5/213 (2%)
Query: 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229
+ P+ + + + + +E+++ ++ LR + K +KL FM
Sbjct: 31 DRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAFA-RGIKLSFM 88
Query: 230 SFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIA 287
FF+KA L Q+PI+NASVD NI Y ++IGIA+ + +GL+VP ++N SI
Sbjct: 89 PFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIF 148
Query: 288 DIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKK 347
+I ++N +L ++ GGTFT+SN G G + P+I PP+ AI + IK
Sbjct: 149 EIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKA 208
Query: 348 R-VIVENNNVVIRPINYFALSYDHRIIDGREAV 379
E V I + S DHRIIDG
Sbjct: 209 LPRFNEKGEVCKAQIMNVSWSADHRIIDGATVS 241
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 260 bits (666), Expect = 3e-81
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 4/215 (1%)
Query: 173 VPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFF 232
+P+S +R IA+RL+QS+ ++NM ++ +R + E K+ F
Sbjct: 15 IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFI 72
Query: 233 VKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKK 292
+KA A + P N+S I + D+ +A+S+ GL+ PI+ NA + I
Sbjct: 73 IKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAND 132
Query: 293 INEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVE 352
+ KA++ KL P E GGTFTISN G+FG + IINPPQ+ IL + A + +++
Sbjct: 133 VVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPA 192
Query: 353 NNN--VVIRPINYFALSYDHRIIDGREAVLSLMSF 385
+N + + LS DHR++DG L F
Sbjct: 193 DNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEF 227
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 144 bits (365), Expect = 3e-36
Identities = 86/358 (24%), Positives = 155/358 (43%), Gaps = 52/358 (14%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDEN-LILSN-- 560
E+ INK ++TIT K +I++ G+K S PG++ + L N
Sbjct: 114 SEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVP 173
Query: 561 -----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615
K ++ P+ +IG G IG+E+ R G EVT++EM++ + +D E+A
Sbjct: 174 DTDRIKAYIDEKK-PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAA 232
Query: 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675
+ + ++ + + + ++ + S ++T+++ ++AIG P
Sbjct: 233 YVHEHMKNHDVELVFEDGV--DALEENGAVVRLKSGSV-IQTDML-------ILAIGVQP 282
Query: 676 NTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAE 725
++ GL + I VN+ +T+ P+IYAIGD + LA A
Sbjct: 283 ESSLAK--GAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPAN 340
Query: 726 EEGIMVAEHISGQKHSINFNAL-PFVIYTFP-EIASVGKTEQYLKKHNISYNVGIFPFLA 783
+G M+A+ I G S+ L V F +A+ G E+ LK+ NI Y V A
Sbjct: 341 RQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQ--A 398
Query: 784 NSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIA 839
NS A + + +K++ + S +I G +G + + AI+ + D+
Sbjct: 399 NSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLP 456
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 140 bits (356), Expect = 1e-35
Identities = 71/368 (19%), Positives = 139/368 (37%), Gaps = 73/368 (19%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
HE+ ++ K+ + A+ ++IATG + + G +L
Sbjct: 114 HEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPD 173
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK 616
LE + + IIG G IGLE+ + LG +V ++E + + D ++A+
Sbjct: 174 AERILKTLETNK-VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEY 232
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
+ +K + I+ N + K N + V+T+ T D +L+++G PN
Sbjct: 233 IYKEADKHHIEILTNENVKAFKGN---------ERVEAVETDKGTYKADLVLVSVGVKPN 283
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEE 726
T+ L + ++ N I VN +TN+ ++YA GD + A +
Sbjct: 284 TDFL--EGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANK 341
Query: 727 EGIMVAEHISGQKHSINFNALPFVIYTFP-------------EIASVGKTEQYLKKHNIS 773
+G + ++ ++ F +A G E+ K +I
Sbjct: 342 QGRLAGLNMLDKRR------------AFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIP 389
Query: 774 YNVGIFPFLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEF 831
Y + + A + +K+L + ++LG +IG + I +A+
Sbjct: 390 YKTVKVD--STNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFN 447
Query: 832 RASSEDIA 839
+ S D+
Sbjct: 448 KMSIHDLE 455
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 138 bits (350), Expect = 5e-35
Identities = 71/357 (19%), Positives = 137/357 (38%), Gaps = 52/357 (14%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
H++ ++ +TI K +I+ TGSK PG+ + N
Sbjct: 79 HQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYND 138
Query: 561 -KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NTVDEEIAKKAF 618
K E K + IIG+G IG E+ + V +++ L D+E
Sbjct: 139 AKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILA 198
Query: 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678
G+N++L +K+ + + ++ + +K++I ++ IG PNT
Sbjct: 199 KDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKE-IKSDIA-------ILCIGFRPNTE 250
Query: 679 NLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEG 728
L K + + +N II ++ ++ +I+A GD LA A +G
Sbjct: 251 LL---KGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQG 307
Query: 729 IMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784
+V +++ K + + + L T S G K +N+ + I N
Sbjct: 308 RLVGLNLTEDKVKDMGTQSSSGLKLYGRT---YVSTGINTALAKANNLKVSEVIIA--DN 362
Query: 785 SRAR-ILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIA 839
R +L ++ ++ D K+ ILG + S+ + I+ + + +D+A
Sbjct: 363 YRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLA 419
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 131 bits (330), Expect = 2e-34
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 31/216 (14%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
I++ +P LS ++ E ++ W KKEGE V + L +IETDK ++ L A DGI+ KI++
Sbjct: 4 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVE 63
Query: 64 DGS-IVTSNQVIALI---DTDISKLSSKTEIKNKKDIK---------------------- 97
+GS + +I LI D + ++ +
Sbjct: 64 EGSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHI 123
Query: 98 --NLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKN--INEEKQEK 153
L + P+A+ IL ++L+ S+ TG G KED LK++ + I E +
Sbjct: 124 PGTLRFRLSPAARNILEKHSLDASQG-TATGPRGIFTKEDALKLVQLKQTGKITESRPTP 182
Query: 154 YKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQS 189
+ + P + +
Sbjct: 183 APTATPTAPSPLQATSGPSYPRPVIPPVSTPGQPNA 218
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 138 bits (351), Expect = 2e-34
Identities = 78/370 (21%), Positives = 139/370 (37%), Gaps = 57/370 (15%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
HE+ I++ + +T + ++++ G+ PGV L N
Sbjct: 79 HEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPD 138
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK 616
++M N + ++G G IGLE+ LG + T+LE++ + VD E+A
Sbjct: 139 MDRILQTIQMNN-VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGF 197
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-----------FD 665
A + QG+++ L T + ++ + + + + I + D
Sbjct: 198 AHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD 257
Query: 666 KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGP 718
L++AIG P T GL + E I VN +T+ P IYA+GD V
Sbjct: 258 LLIMAIGVRPETQLAR--DAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQA 315
Query: 719 M---LAHKAEEEGIMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHN 771
LA A +G M A+++ G++ + + + GK E+ LK+
Sbjct: 316 CLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLA---VGATGKNEKQLKQAG 372
Query: 772 ISYNVGIFPFLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAI 829
I++ S A + K+L D I G +G + I +A
Sbjct: 373 IAFEKVYVH--TASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQ 430
Query: 830 EFRASSEDIA 839
+ E +
Sbjct: 431 RAGMTVEQLQ 440
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 136 bits (346), Expect = 2e-34
Identities = 66/363 (18%), Positives = 136/363 (37%), Gaps = 58/363 (15%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
I++ T+ + +++A GSKA G+ ++N
Sbjct: 87 TRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDE 146
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIG-SIWRRLGSEVTILEMSSNFLNT-VDEEIA 614
+ A+ K I+G G IGLE+ S+ G + T++E++ + + ++
Sbjct: 147 AEFVQHAISAGE-VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLS 205
Query: 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674
+ H L K + + K+ ++ V ++K T + +++ ++A G
Sbjct: 206 QMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRT-LDADLV-------ILAAGVS 257
Query: 675 PNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKA 724
PNT GL+++ IIV+ T+ P+I+A GD V P L A
Sbjct: 258 PNTQLAR--DAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMA 315
Query: 725 EEEGIMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP 780
+G ++ +++ ++ A+ + + G T + +
Sbjct: 316 NRQGRVIGTNLADGDATFPGAVGSWAVKLFEGS---ASGAGLTVEGALREGYDAVNVHVE 372
Query: 781 FLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPMASEL---IAEAVIAIEFRASSE 836
RA E + M ++++ D + +LGI + L I + + + E
Sbjct: 373 --QFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVE 430
Query: 837 DIA 839
DI+
Sbjct: 431 DIS 433
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 134 bits (341), Expect = 6e-34
Identities = 65/369 (17%), Positives = 129/369 (34%), Gaps = 75/369 (20%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKARS--FPGVKFDENLILSN--- 560
EI I + +T K +II+ G+ PG D ++
Sbjct: 77 TEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQW 136
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAK 615
K + +IG+G IG+E + + G +VT++++ L +D+E
Sbjct: 137 AIKLKQKTVDPE-VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTD 195
Query: 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675
+ + I + + + + V T+ D +++A+G P
Sbjct: 196 VLTEEMEANNITIATGETVERYEGD---------GRVQKVVTDKNAYDADLVVVAVGVRP 246
Query: 676 NTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAE 725
NT L K L+++ N I ++ T+ P+++A+GD + LA A
Sbjct: 247 NTAWL---KGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAR 303
Query: 726 EEGIMVAEHISGQKHSINFNALPFVIYTFP-------------EIASVGKTEQYLKKHNI 772
++G +++ FP + AS G E +K
Sbjct: 304 KQGRFAVKNLEEPVK------------PFPGVQGSSGLAVFDYKFASTGINEVMAQKLGK 351
Query: 773 SYNVGIFPFLANSRAR-ILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIE 830
+ + K++ D ++ +ILG ++ + I +AI+
Sbjct: 352 ETKAVTVV--EDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQ 409
Query: 831 FRASSEDIA 839
+ + ED+A
Sbjct: 410 AKMTIEDLA 418
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 134 bits (340), Expect = 1e-33
Identities = 65/355 (18%), Positives = 130/355 (36%), Gaps = 53/355 (14%)
Query: 519 HEIQIINKTKETITAK-----------YIIIATGSKARS--FPGVKFDENLILSN----K 561
E+ ++ + I +I+ATG+ S G + ++ L
Sbjct: 79 REVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGAL 138
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHL 620
A+ ++ + + +IGAG IG+E ++ V + E N L D+E+ +
Sbjct: 139 AAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKS 198
Query: 621 LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL 680
L KQ + + I+ N ++ +++ + + + A+ P L
Sbjct: 199 LEKQAVIFHFEETVLGIE-ETANGIVLETSEQE-ISCDSG-------IFALNLHPQLAYL 249
Query: 681 NIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEGIM 730
++ N + I V+ +T++PN++AIGD + L + A G++
Sbjct: 250 ---DKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLV 306
Query: 731 VAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSR 786
VA ++ + H S+ Y +AS G TE + I
Sbjct: 307 VANNLEEKTHRFIGSLRTMGTKVGDYY---LASTGLTETEGLFFPQTLASIIV----RQP 359
Query: 787 ARI-LGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIA 839
A T + K++ D + +LG + E I ++I+ + D+
Sbjct: 360 APPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLL 414
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 132 bits (334), Expect = 4e-33
Identities = 76/361 (21%), Positives = 138/361 (38%), Gaps = 66/361 (18%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKARSFPGVKFDENLILSN----- 560
HE+ IN ++T++ +I++ G+ A G + D L N
Sbjct: 79 HEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN-SLGFESDITFTLRNLEDTD 137
Query: 561 --KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF 618
++ K+ ++GAG + LE+ G T++ S +D ++ +
Sbjct: 138 AIDQFIKANQ-VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPIL 196
Query: 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678
L+K+ + LN +I IN + D ++ +G PN+
Sbjct: 197 DELDKREIPYRLNEEI--NAINGNEIT-------FKSGKVEHY---DMIIEGVGTHPNSK 244
Query: 679 NLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEG 728
+ +K++ FI VND ETN+PNIYAIGD+ P LA A
Sbjct: 245 FIE--SSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAA 302
Query: 729 IMVAEHISGQKHSINFNALPF-------VIYTFP-EIASVGKTEQYLKKHNISYNVGIFP 780
+VAE I+G + + F ++ F ASVG LK+ +
Sbjct: 303 SIVAEQIAGN------DTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVE---- 352
Query: 781 FLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDI 838
+ A S + +++ D + +IL +G A + I +A+ + + +++
Sbjct: 353 VTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDEL 412
Query: 839 A 839
Sbjct: 413 T 413
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 132 bits (335), Expect = 5e-33
Identities = 63/341 (18%), Positives = 130/341 (38%), Gaps = 45/341 (13%)
Query: 526 KTKETITAKY--IIIATGSKAR--SFPGVKFDENLILSN-------KGALEMINVPKKLC 574
+ + ++ ++ A G+ + + GV + +E + +
Sbjct: 94 ENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYK-VENVV 152
Query: 575 IIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTK 633
IIG G IG+E+ + G VT++ L + D+E+ L K+ +N+ L
Sbjct: 153 IIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL-KKHVNLRLQEI 211
Query: 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693
I+ +E V ++ K E++ ++A G PN ++G+++ E
Sbjct: 212 TMKIE-GEERVEKVVTDAGE-YKAELV-------ILATGIKPNIELAK--QLGVRIGETG 260
Query: 694 FIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEGIMVAEHISGQKH--- 740
I N+ +T++ N+YA GDV + LA + G + +I+G++
Sbjct: 261 AIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFP 320
Query: 741 -SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGM-VK 798
+ F+ I G TE K A++R + +K
Sbjct: 321 GVLGTAVTKFMDVE---IGKTGLTEMEALKEGYDVRTAFIK--ASTRPHYYPGGREIWLK 375
Query: 799 ILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIA 839
+ D +++ +LG+ ++G I A + +++D
Sbjct: 376 GVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAF 416
Score = 34.8 bits (81), Expect = 0.11
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSN--FLN-----------TVDEEIAK 615
KK+ IIG G G+ S +RL +V + E + T D+ +
Sbjct: 4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYY 63
Query: 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKT-EIITSIFDKLLIAIGRI 674
+ K+G+++ LN ++ I+++ V + + +D L+ A G
Sbjct: 64 PPEVFIKKRGIDLHLNAEV--IEVDTGYV--------RVRENGGEKSYEWDYLVFANGAS 113
Query: 675 PN 676
P
Sbjct: 114 PQ 115
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 132 bits (334), Expect = 9e-33
Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 65/369 (17%)
Query: 519 HEIQIINKTKETITAK-----------YIIIATGSKARS--FPGV---KFDENLILSNKG 562
+Q I+ +T+TA +I ATGS+ G + + +
Sbjct: 113 SPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLEN 172
Query: 563 ALEMINV--------------PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT 608
+ K++ ++GAG IG+E+ ++R G EV ++++ L
Sbjct: 173 LQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG 232
Query: 609 V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKL 667
D ++ + + G+ + + ++ V ++K+ +++
Sbjct: 233 YYDRDLTDLMAKNMEEHGIQLAFGETVKEVA-GNGKVEKIITDKNE-YDVDMV------- 283
Query: 668 LIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM- 719
++A+G PNT + + N +VN ET+IP +YAIGD R
Sbjct: 284 ILAVGFRPNTTLG---NGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNY 340
Query: 720 --LAHKAEEEGIMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNIS 773
LA A GI+ A + G N + + S G T + K+
Sbjct: 341 IALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLH---MVSTGLTLEKAKRLGFD 397
Query: 774 YNVGIFPFLANSRARI--LGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIE 830
V + N + G +KI+ D S ILG + S I +AI+
Sbjct: 398 AAVTEYT--DNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQ 455
Query: 831 FRASSEDIA 839
+ E +A
Sbjct: 456 EGVTIEKLA 464
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 116 bits (293), Expect = 2e-31
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
I++K P ESI++ T+ WHKK GE V R+E ++DIETDKV++E+ A DG+I +I+
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 64 DGSIVTSNQVIALIDT 79
+G V S +++ +
Sbjct: 62 EGDTVLSGELLGKLTE 77
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 115 bits (291), Expect = 4e-31
Identities = 34/77 (44%), Positives = 58/77 (75%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
+ +++ +P L ES+++AT+ WHKK G+ VVR+E L++IETDKV+LE+PA DGI++ ++
Sbjct: 1 SSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
Query: 62 ITDGSIVTSNQVIALID 78
+G+ VTS Q++ +
Sbjct: 61 EDEGTTVTSRQILGRLR 77
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 106 bits (268), Expect = 1e-24
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 33/242 (13%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI--------LSNKGAL-EMINVPKKLCIIGAG 579
+ +++ATG + R P L + + + +L +IG G
Sbjct: 99 RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGG 158
Query: 580 VIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638
IGLE+ + + VT+L+ ++ L ++ HL + G++I T++ +
Sbjct: 159 YIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFE 218
Query: 639 INKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV 697
++ + K T V E T + D ++ IG IPN GL+V +N I++
Sbjct: 219 MSTDQ------QKVTAVLCEDGTRLPADLVIAGIGLIPNCELA--SAAGLQV--DNGIVI 268
Query: 698 NDNCETNIPNIYAIGDVVRGPMLAHK----------AEEEGIMVAEHISGQKHSINFNAL 747
N++ +T+ P I A+GD R + A E+ +A + G+ A
Sbjct: 269 NEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVPR--DEAA 326
Query: 748 PF 749
P+
Sbjct: 327 PW 328
Score = 29.9 bits (68), Expect = 3.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGF 414
MN N +V+++G G G + L G+
Sbjct: 1 MNANDNVVIVGTGLAGVEVAFGLRASGW 28
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 105 bits (264), Expect = 3e-24
Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 34/241 (14%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI-----LSNKGAL--EMINVPKKLCIIGAGVI 581
I +I ATG R V D + + L E+ K +IG G I
Sbjct: 104 SAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYI 163
Query: 582 GLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN 640
GLE ++ + G VT+LE L E +++ G+++ + I+ +
Sbjct: 164 GLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD 223
Query: 641 KENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699
V T V+ + + I D +++ IG +P L G N + V++
Sbjct: 224 GTKV--------TGVRMQDGSVIPADIVIVGIGIVPCVGAL--ISAGASG--GNGVDVDE 271
Query: 700 NCETNIPNIYAIGDVVRGPMLAHK-----------AEEEGIMVAEHISGQKHSINFNALP 748
C T++ ++YAIGD A + A+ I G + A P
Sbjct: 272 FCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVP--YKATP 329
Query: 749 F 749
+
Sbjct: 330 W 330
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 104 bits (262), Expect = 5e-24
Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSN-------------KGALEMINVPKKLCI 575
I ++++ATG++ R L + + + K + +
Sbjct: 95 TAIEYGHLVLATGARNRMLDVPNAS----LPDVLYLRTLDESEVLRQRMP---DKKHVVV 147
Query: 576 IGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKI 634
IGAG IGLE + R G EV ++E++ + V EI+ + G+ + +
Sbjct: 148 IGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRA 207
Query: 635 HDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693
+I + V T V ++ D +++ +G IPN GL
Sbjct: 208 TEIAAEGDRV--------TGVVLSDGNTLPCDLVVVGVGVIPNVEIA--AAAGLPT--AA 255
Query: 694 FIIVNDNCETNIPNIYAIGDVVRGPMLAHK----------AEEEGIMVAEHISGQKHSIN 743
IIV+ T+ P+I AIGD + A ++ VA ++G
Sbjct: 256 GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAKP-- 313
Query: 744 FNALPF 749
++ P+
Sbjct: 314 YDGYPW 319
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 102 bits (257), Expect = 3e-23
Identities = 59/238 (24%), Positives = 91/238 (38%), Gaps = 32/238 (13%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI-----LSNKGAL-EMINVPKKLCIIGAGVIG 582
T++A I+IATGS+AR+ + + L + +L I+G G+IG
Sbjct: 96 TTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIG 155
Query: 583 LEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK 641
E+ + R+LG VTILE L + I LL + G+ + L T +
Sbjct: 156 CEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE- 214
Query: 642 ENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700
+ V S D LI +G P + GL + +IV+
Sbjct: 215 --------GQLEQVMASDGRSFVADSALICVGAEPADQLA--RQAGLAC--DRGVIVDHC 262
Query: 701 CETNIPNIYAIGDVVRGPMLAHK---------AEEEGIMVAEHISGQKHSINFNALPF 749
T ++A+GDV P+ A A+ + VA I G+ S LP
Sbjct: 263 GATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNVS--APQLPV 318
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid;
HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB:
1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Length = 219
Score = 98.2 bits (244), Expect = 3e-23
Identities = 19/179 (10%), Positives = 47/179 (26%), Gaps = 6/179 (3%)
Query: 208 IDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAI 267
++L + K F F+ + + +P ++ ++ +
Sbjct: 35 QTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTV 94
Query: 268 SSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNK-LLPEEMSGGTFTISNGGVFGSM 326
+ L + ++ + +N P+ F +S
Sbjct: 95 FHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFT 154
Query: 327 LSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
+ + V + K + V+ P+ A+ H + DG L
Sbjct: 155 SFDLNVANMDNFFAPVFTMGK--YYTQGDKVLMPL---AIQVHHAVCDGFHVGRMLNEL 208
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 102 bits (257), Expect = 5e-23
Identities = 61/400 (15%), Positives = 124/400 (31%), Gaps = 87/400 (21%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG---CIP--- 442
+ ++IG G + A+ + V +P
Sbjct: 10 SHVPFLLIGGGTAAFAAARSIRARDPG-----------------ARVLIVSEDPELPYMR 52
Query: 443 ---SKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKN 499
SK L + F ++ +++ ++ N G+ L
Sbjct: 53 PPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLT--- 109
Query: 500 KIKFFHGHAIFTGKIQNNFHEIQIINKT-----KETITAKYIIIATGSKARSFPGVKFDE 554
G + ++ + + IT + +IATG RS +
Sbjct: 110 ------GKKV---------VQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 154
Query: 555 NLILSNKGAL----------EMINVPKKLCIIGAGVIGLEI----GSIWRRLGSEVTILE 600
+ S ++ K + IIG G +G E+ G R LG+EV L
Sbjct: 155 AEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLF 214
Query: 601 MSS-NFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEI 659
N + E ++ + ++G+ ++ N + + ++ +LI + ++
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKD-----GRKV 269
Query: 660 ITSIFDKLLIAIGRIPNTNNLNIDKIGLKV-NENNFIIVNDNCETNIPNIYAIGDVVRGP 718
T D ++ A+G PN GL++ ++ VN + NI+ GD
Sbjct: 270 ET---DHIVAAVGLEPNVELA--KTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFY 323
Query: 719 MLAHK---------AEEEGIMVAEHISGQKHSINFNALPF 749
+ A G + E+++G +
Sbjct: 324 DIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP--YWHQSM 361
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 101 bits (253), Expect = 8e-23
Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 36/239 (15%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI-----LSNKGAL-EMINVPKKLCIIGAGVIG 582
T+ +++ATG+ R+ P ++ + L + + + +L I+G GVIG
Sbjct: 98 RTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIG 157
Query: 583 LEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK 641
LE+ + R G V+++E ++ +A QG+++ +
Sbjct: 158 LELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGS---- 213
Query: 642 ENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700
V + T I D +++ IG + N GL ++ I V+
Sbjct: 214 ---------VDGVVLLDDGTRIAADMVVVGIGVLANDALA--RAAGLAC--DDGIFVDAY 260
Query: 701 CETNIPNIYAIGDVVRGPMLAHK----------AEEEGIMVAEHISGQKHSINFNALPF 749
T P++YA+GDV R A+ +GI VA H+ + LP+
Sbjct: 261 GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAP-GYAELPW 318
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 98.4 bits (246), Expect = 4e-22
Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 45/242 (18%)
Query: 519 HEIQIINKTKETITAK-------YIIIATGSKAR--SFPGVK--F------DENLILSNK 561
E ++I++ ++ + + +++ATG++AR G + D + I
Sbjct: 81 EEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIK--- 137
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
E I + IIG G IGLE+ G V ++ + FL +DEE++ +L
Sbjct: 138 ---ESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDML 193
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
+ G+ LN+++ ++ N+E VL N I + AIG +PN +
Sbjct: 194 EETGVKFFLNSEL--LEANEEGVLTN--------SGFIEG---KVKICAIGIVPNVDLAR 240
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV--RGPM--LAHKAEEEGIMVAEHISG 737
+ G+ I+++DN T+ ++YAIGD G + A A E+ ++A+ + G
Sbjct: 241 --RSGIHTGRG--ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 296
Query: 738 QK 739
+
Sbjct: 297 EP 298
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 97.8 bits (244), Expect = 2e-21
Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 81/363 (22%)
Query: 373 IDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG 432
+D + + +DV+++G+GP G A++ A+ G +T + E G
Sbjct: 195 VDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--------RFG 246
Query: 433 GTCTNVGCI---PSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNN 489
G + I S + +K +Y ++ + + + ++
Sbjct: 247 GQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVID--------SQSASKLVPAAT 298
Query: 490 SGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549
G L QI + + A+ IIIATG+K R+
Sbjct: 299 EGGLH---------------------------QIETASGAVLKARSIIIATGAKWRNM-N 330
Query: 550 VKFDENLILSNKGALEMINV------------PKKLCIIGAGVIGLEIGSIWRRLGSEVT 597
V ++ KG V K++ +IG G G+E + VT
Sbjct: 331 VPGEDQY--RTKG------VTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVT 382
Query: 598 ILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVK 656
+LE + D+ + K L N ++IILN + ++K + V+ + Y ++ +
Sbjct: 383 LLEFAPEM--KADQVLQDKVRSLKN---VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDI 437
Query: 657 TEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
+ + IF + IG +PNT+ L + L+ N II++ CET++ ++A GD
Sbjct: 438 HSVALAGIF----VQIGLLPNTHWL---EGALERNRMGEIIIDAKCETSVKGVFAAGDCT 490
Query: 716 RGP 718
P
Sbjct: 491 TVP 493
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 86.9 bits (216), Expect = 4e-21
Identities = 26/77 (33%), Positives = 50/77 (64%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ E K+P + E ++E ++ W KEG++V ++++L+++ TDKV +++P+P G I KI+
Sbjct: 1 MYEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILY 60
Query: 63 TDGSIVTSNQVIALIDT 79
+G +V + IDT
Sbjct: 61 REGQVVPVGSTLLQIDT 77
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 94.6 bits (236), Expect = 7e-21
Identities = 48/219 (21%), Positives = 79/219 (36%), Gaps = 48/219 (21%)
Query: 537 IIATGSKAR--SFPGVK--F------DENLILSNKGALEMINVPKKLCIIGAGVIGLEIG 586
IIA+GS A P F D I + K IIG G++G+E+
Sbjct: 109 IIASGSIANKIKVPHADEIFSLYSYDDALKIK------DECKNKGKAFIIGGGILGIELA 162
Query: 587 SIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL 645
G+ +I + L +D + L++ G+ I N+
Sbjct: 163 QAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF----------- 211
Query: 646 INYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704
E+ I ++ A+G PN + + + I+VND+ ET+
Sbjct: 212 -----------EEMGDLIRSSCVITAVGVKPNLDFIK--DTEIASK--RGILVNDHMETS 256
Query: 705 IPNIYAIGDVV--RGPMLAH--KAEEEGIMVAEHISGQK 739
I +IYA GDV G A ++G + + G+
Sbjct: 257 IKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase;
lipoyl acid bearing, human BCKD, experimental DATA,
average structure, transferase; NMR {Homo sapiens}
SCOP: b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 83.1 bits (206), Expect = 2e-19
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
+++ K+ + E I E T+ W+ KEG+ V + +++ ++++DK + + + DG+I K+
Sbjct: 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
Query: 61 IITDGSIVTSNQVIALIDTD 80
I + + I+T+
Sbjct: 62 YYNLDDIAYVGKPLVDIETE 81
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 85.5 bits (211), Expect = 6e-19
Identities = 15/163 (9%), Positives = 43/163 (26%), Gaps = 7/163 (4%)
Query: 218 FEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPI 277
+ + F + + A+ Q+ + ++ + +I D +
Sbjct: 40 KKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSA 99
Query: 278 LRNADTMSIADIEKKINEFINKAQDNKLL--PEEMSGGTFTISNGGVFGSMLSTPIINPP 335
L + I + + + + L IS +
Sbjct: 100 LSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANF 159
Query: 336 QSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
+ + K + + ++ P+ ++ H + DG
Sbjct: 160 TDYFAPIITMAK--YQQEGDRLLLPL---SVQVHHAVCDGFHV 197
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 88.8 bits (221), Expect = 6e-19
Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 23/223 (10%)
Query: 537 IIATGSKAR--SFPGVKFDENLILSN----KGALEMINVPKKLCIIGAGVIGLEIGSIWR 590
++A G++ G D +++ + +++ ++GAG+IG E +
Sbjct: 106 VLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLS 165
Query: 591 RLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYS 649
G ++ ++ + + AK L G+ L + +K E + + S
Sbjct: 166 SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLS 225
Query: 650 NKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIY 709
+ I D ++ A+G P T L GL VN I+V+ + T+ NIY
Sbjct: 226 DG-----EVIPC---DLVVSAVGLRPRTE-L-AFAAGLAVNRG--IVVDRSLRTSHANIY 273
Query: 710 AIGDV--VRGPMLAHKA--EEEGIMVAEHISGQKHSINFNALP 748
A+GD V G L + +A+ ++G + + +P
Sbjct: 274 ALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMP 316
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 88.0 bits (219), Expect = 7e-18
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 197 TTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINAS---VDGN 253
T+ I + +ID R+ + ++ K+ F A+V A+K++P +N VDG
Sbjct: 12 TSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGK 71
Query: 254 -NIIYHKYYDIGIAI-----SSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLP 307
I + ++G+AI +R LVV ++ +TM + + +A+D KL
Sbjct: 72 PTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTA 131
Query: 308 EEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALS 367
E+ SG T +++N G G++ S P + Q AI+G A++ E I +
Sbjct: 132 EDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYP--AEFQGASEERIADLGIG 189
Query: 368 --------YDHRIIDGREA 378
YDHRII G E+
Sbjct: 190 KLITLTSTYDHRIIQGAES 208
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 83.0 bits (206), Expect = 3e-17
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 39/215 (18%)
Query: 520 EIQIINKTKETITAKYIIIATGSKARS--FPGVKFDENLILSNKGALEMINVP------- 570
I +T AKY+II TG+ + G E+ KG
Sbjct: 102 GGFDIETNDDTYHAKYVIITTGTTHKHLGVKG----ES-EYFGKG------TSYCSTCDG 150
Query: 571 -----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
K++ IG G G VTI+E + + ++ + K+
Sbjct: 151 YLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY--MCENAYVQE----IKKRN 204
Query: 626 LNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITS-IFDKLLIAIGRIPNTNNLNID 683
+ I+N ++ +I + + V + Y +++T + I T +F I +G IP T+ L
Sbjct: 205 IPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVF----IYVGLIPQTSFLK-- 258
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
G+K++E +I+V+ T++P +YA GDV G
Sbjct: 259 DSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGN 293
Score = 40.6 bits (96), Expect = 0.002
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
++FDV+++GAG G+ A++ A+ GF A +D+
Sbjct: 14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK 47
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 81.5 bits (202), Expect = 1e-16
Identities = 61/355 (17%), Positives = 112/355 (31%), Gaps = 91/355 (25%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT--------- 436
+ + DV+++GAGP G A + G +D + GG T
Sbjct: 1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE------PGGQLTALYPEKYIY 54
Query: 437 NVGCIPS-------KALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNN 489
+V P K L++ F +L ER + ++ +
Sbjct: 55 DVAGFPKVYAKDLVKGLVEQVAPFN-------------PVYSLG-----ERAETLEREGD 96
Query: 490 SGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF-- 547
F ++ TAK +IIA G +F
Sbjct: 97 L---FKVTTSQ---------------------------GNAYTAKAVIIAAG--VGAFEP 124
Query: 548 --PGVKFDENLILSNKGALEMINVP-----KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
G + +G + K++ I+G G ++ +T++
Sbjct: 125 RRIGAPGEREF--EGRGVYYAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIH 182
Query: 601 MSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEII 660
F E K+ + L ++ ++ ++ ++ + T + +
Sbjct: 183 RRPQF--RAHEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALE 240
Query: 661 TSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
D +LI G I + GL + E N I V+ T+IP +YA GD+V
Sbjct: 241 V---DAVLILAGYITKLGP--LANWGLAL-EKNKIKVDTTMATSIPGVYACGDIV 289
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 80.6 bits (200), Expect = 1e-16
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 521 IQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP---------- 570
QI + + A+ II+ATG+K R+ V ++ KG V
Sbjct: 92 HQIETASGAVLKARSIIVATGAKWRNM-NVPGEDQY--RTKG------VTYCPHCDGPLF 142
Query: 571 --KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628
K++ +IG G G+E + VT+LE + D+ + K L N ++I
Sbjct: 143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM--KADQVLQDKLRSLKN---VDI 197
Query: 629 ILNTKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIG 686
ILN + ++K + V+ + Y ++ + I + IF + IG +PNTN L +
Sbjct: 198 ILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIF----VQIGLLPNTNWL---EGA 250
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVV 715
++ N II++ CETN+ ++A GD
Sbjct: 251 VERNRMGEIIIDAKCETNVKGVFAAGDCT 279
Score = 39.4 bits (93), Expect = 0.003
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
+DV+++G+GP G A+I A+ G +T + E
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE 32
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 80.3 bits (199), Expect = 2e-16
Identities = 38/220 (17%), Positives = 65/220 (29%), Gaps = 42/220 (19%)
Query: 529 ETITAKYIIIATGSKARSFPGVK-FDENLILSNKGAL--------EMINVPKKLCIIGAG 579
TA +I+A G P + E E+ K+ +I A
Sbjct: 97 RRETAGRLILAMGVTDE-LPEIAGLRE---RWGSAVFHCPYCHGYELDQ--GKIGVIAAS 150
Query: 580 VIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639
+ + + G N + D + L +G+ + T+I +I
Sbjct: 151 PMAIHHALMLPDWGETTFFT----NGIVEPDADQHAL----LAARGVRVE-TTRIREIAG 201
Query: 640 NKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENN---FI 695
+ +V SI L + + +K+G V E I
Sbjct: 202 HA------------DVVLADGRSIALAGLFTQPKLRITVDWI--EKLGCAVEEGPMGSTI 247
Query: 696 IVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+ + +T I+A GDV R A +G M
Sbjct: 248 VTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAA 287
Score = 39.1 bits (92), Expect = 0.004
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
FDVI+IG G A+++L + +D
Sbjct: 3 FDVIIIGGSYAGLSAALQLGRARKNILLVD 32
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 79.9 bits (198), Expect = 2e-16
Identities = 32/211 (15%), Positives = 70/211 (33%), Gaps = 36/211 (17%)
Query: 520 EIQIINKTKETITAKYIIIATGSKARSFPGVK-FDENLILSNKGAL--------EMINVP 570
+I+ K A+ +++ATG + FP + E K E+ +
Sbjct: 93 LFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVRE---YYGKSLFSCPYCDGWELKD-- 146
Query: 571 KKLCIIGAGVIG-LEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
+ L II L + + +++ I T E+++ L+ + + +I
Sbjct: 147 QPLIIISENEDHTLHMTKLVYNWSTDLVIA--------TNGNELSQTIMDELSNKNIPVI 198
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLK 688
I ++ + V+ I I + +++G +
Sbjct: 199 -TESIRTLQGEGGYL--------KKVEFHSGLRIERAGGFIVPTFFRPNQFI--EQLGCE 247
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPM 719
+ N +++D T+ NIY G+
Sbjct: 248 LQSNGTFVIDDFGRTSEKNIYLAGETTTQGP 278
Score = 42.9 bits (102), Expect = 3e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
K D VIGAGP G AS+ L + + A D
Sbjct: 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDN 37
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 73.6 bits (181), Expect = 8e-16
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
++V +P LS +++ T+ W KK GE + + L +IETDK + ++G + KI++
Sbjct: 28 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVP 87
Query: 64 DGSI-VTSNQVIALI---DTDISKLSSKT 88
+G+ V + +I + DIS +
Sbjct: 88 EGTRDVPLGTPLCIIVEKEADISAFADYR 116
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 78.9 bits (195), Expect = 9e-16
Identities = 57/356 (16%), Positives = 113/356 (31%), Gaps = 93/356 (26%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT---------N 437
+ D+ +IG GP G A+ + I+ LGG +
Sbjct: 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQ------LGGQLAALYPEKHIYD 64
Query: 438 VGCIPS-------KALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNS 490
V P ++L + + +V LN E K ++
Sbjct: 65 VAGFPEVPAIDLVESLWAQAERYN-------------PDVVLN-----ETVTKYTKLDDG 106
Query: 491 GILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA---RSF 547
F + N ++ ++IA G A R
Sbjct: 107 --TFETRTNT---------------------------GNVYRSRAVLIAAGLGAFEPRKL 137
Query: 548 PGVKFDENLILSNKGALEMINVP-----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602
P + ++L + K++ I+G G L+ + + VT++
Sbjct: 138 PQLGNIDHLT--GSSVYYAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRG 195
Query: 603 SNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK---ENVLINYSNKSTNVKTEI 659
F + A + +++ L T++ I+ + V + +
Sbjct: 196 HEF--QGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLR------SSDGSK 247
Query: 660 ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
T D+LLI IG N + + L++ N ++V+ + +T++ +YA GD+
Sbjct: 248 WTVEADRLLILIGFKSNLG--PLARWDLEL-YENALVVDSHMKTSVDGLYAAGDIA 300
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 71.2 bits (175), Expect = 3e-15
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
I++ +P LS ++ E ++ W KKEGE V + L +IETDK ++ L A DGI+ KI++
Sbjct: 8 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVE 67
Query: 64 DGSI-VTSNQVIALI---DTDISKLSSKT 88
+GS + +I LI D +S +
Sbjct: 68 EGSKNIRLGSLIGLIVEEGEDWKHVSGPS 96
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI-
protein structure initiative, midwest center for
structural genomics; 2.30A {Bacteroides
thetaiotaomicron}
Length = 217
Score = 73.6 bits (180), Expect = 7e-15
Identities = 22/170 (12%), Positives = 45/170 (26%), Gaps = 15/170 (8%)
Query: 217 KFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNN-IIYHKYYDIGIAISSSRGLVV 275
+ K F ++ AV+ A + P +D + ++ + D+ I
Sbjct: 43 QRAKAAGQS--FFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKENGKF 100
Query: 276 PILRNADTMSIADIEKKINEFINKAQD-------NKLLPEEMSGGTFTISNGGVFGSMLS 328
R ++ I+ + + G +S
Sbjct: 101 FTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSI 160
Query: 329 TPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
T + K + ++ PI A++ H IDG
Sbjct: 161 TGTQEKRSGNNYPLLNAGK--AIIREGRLVMPI---AMTIHHGFIDGHHL 205
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; lipoyl domain, lipoic acid,
2-oxoacid dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 70.1 bits (172), Expect = 8e-15
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
+V +P LS ++ T+ W KKEG+ + + + ++ETDK + + ++ + KI++
Sbjct: 8 QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 64 DGSI-VTSNQVIALI---DTDISKLSSKTE 89
+G+ V +I + DI + T
Sbjct: 68 EGTRDVPIGAIICITVGKPEDIEAFKNYTL 97
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 75.7 bits (187), Expect = 9e-15
Identities = 58/359 (16%), Positives = 113/359 (31%), Gaps = 107/359 (29%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT---------NV 438
K +D+ +IG GP G + I E LGG + +V
Sbjct: 5 TKVYDITIIGGGPVGLFTAFYGGMRQASVKII------ESLPQLGGQLSALYPEKYIYDV 58
Query: 439 GCIPS-------KALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
P L + F+ Q + L + ++ K+ +
Sbjct: 59 AGFPKIRAQELINNLKEQMAKFD-------------QTICLE-----QAVESVEKQADGV 100
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF---- 547
+ +ET +K +II G +F
Sbjct: 101 F------------------------------KLVTNEETHYSKTVIITAG--NGAFKPRK 128
Query: 548 PGVKFDENLILSNKGALEMINVP-----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602
++ E K ++ +++ I+G G ++ + + EV+I+
Sbjct: 129 LELENAEQY--EGKNLHYFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRR 186
Query: 603 SNF---LNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK--ENVLINYSNKSTNVKT 657
F ++V+ L+ +N++ ++ E +++ VK
Sbjct: 187 DKFRAHEHSVEN---------LHASKVNVLTPFVPAELIGEDKIEQLVL------EEVKG 231
Query: 658 EIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
+ + D L++ G + + I GL + E N I+V ETNI +A GD+
Sbjct: 232 DRKEILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKSTMETNIEGFFAAGDIC 287
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex,...; pyruvate dehydrogenase
kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A
{Homo sapiens} PDB: 3crl_C*
Length = 87
Score = 65.1 bits (159), Expect = 3e-13
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
++V +P LS +++ T+ W KK GE + + L +IETD + ++G + KI++
Sbjct: 6 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVP 65
Query: 64 DGSI-VTSNQVIALIDTD 80
+G+ V + +I
Sbjct: 66 EGTRDVPLGTPLCIIVEK 83
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 67.9 bits (167), Expect = 2e-12
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 523 IINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------P 570
+ K K A +I+ G K R GV ++ + +G +
Sbjct: 104 VKTKRKGEFKADSVILGIGVKRRKL-GVPGEQEF--AGRG------ISYCSVADAPLFKN 154
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIIL 630
+ + +IG G LE I ++V ++ F + K + +L
Sbjct: 155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF--KAQPIYVETVK---KKPNVEFVL 209
Query: 631 NTKIHDIKINK--ENVLINYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
N+ + +IK +K + V++ N T E+ + +F I IG P T+ G+
Sbjct: 210 NSVVKEIKGDKVVKQVVVE--NLKTGEIKELNVNGVF----IEIGFDPPTDFAK--SNGI 261
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVV 715
+ + N +I V++ T++P ++A GD
Sbjct: 262 ETDTNGYIKVDEWMRTSVPGVFAAGDCT 289
Score = 36.7 bits (86), Expect = 0.027
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ FDVI++G GP Y A++ A+ KT I
Sbjct: 13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIG 45
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 67.4 bits (165), Expect = 1e-11
Identities = 70/434 (16%), Positives = 123/434 (28%), Gaps = 107/434 (24%)
Query: 375 GREAVLSLMSFIMNKNFD---VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL 431
G E + + V+++GAGP G A+ L + G+ D + +
Sbjct: 371 GEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--TAEK----I 424
Query: 432 GGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
GG V +P + +Y + + + + K N
Sbjct: 425 GGHLNQVAALPGLGEW----------SYHRDY----------RETQITK----LLKKNKE 460
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK--TKETITA-KY--IIIATGSKARS 546
++ + K T + + +IIATG++ +
Sbjct: 461 S---------------------------QLALGQKPMTADDVLQYGADKVIIATGARWNT 493
Query: 547 FPGVKFDENLILSNKGALEMI-----------NVPKKLCIIGAG--VIGLEIGSIWRRLG 593
+ I +L + K++ I+ A + + G
Sbjct: 494 DGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAG 553
Query: 594 SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKST 653
EVTI+ L++ + + + I+ + + + + S
Sbjct: 554 HEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSK 613
Query: 654 NVKTEIITSI-----------FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702
S FD L++ GR N LK E+ + E
Sbjct: 614 RTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARESEW------AE 663
Query: 703 TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGK 762
+I IY IGD P L A G VA I A+P+ E + G
Sbjct: 664 NDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEANPQ---IAIPYK----RETIAWGT 715
Query: 763 TEQYLKKHNISYNV 776
I Y V
Sbjct: 716 PHMPGGNFKIEYKV 729
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 62.9 bits (154), Expect = 1e-10
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 44/208 (21%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCII 576
+T AK +IIATG + G+K + KG V K++ ++
Sbjct: 99 KTFEAKSVIIATGGSPKRT-GIKGESEY--WGKG------VSTCATCDGFFYKNKEVAVL 149
Query: 577 GAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV---DEEIAKKAF--HLLNKQGLNIILN 631
G G +E + +V + + D H N + +
Sbjct: 150 GGGDTAVEEAIYLANICKKVYL----------IHRRDGFRCAPITLEHAKNNDKIEFLTP 199
Query: 632 TKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLN--IDKIGL 687
+ +IK + V ++ N +TN K E+ + F I +G N L + +
Sbjct: 200 YVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFF----IFVGYDVNNAVLKQEDNSMLC 255
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVV 715
K +E I+V+ + +TN+ ++A GD+
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
Score = 32.5 bits (75), Expect = 0.58
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 391 FDVIVIGAGPGGYVASI 407
D +IG GP G A +
Sbjct: 2 IDCAIIGGGPAGLSAGL 18
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 61.4 bits (150), Expect = 3e-10
Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 43/213 (20%)
Query: 523 IINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------P 570
I + +T AK +I+ TGS + G K ++ KG V
Sbjct: 97 IKLEGGKTELAKAVIVCTGSAPKKA-GFKGEDEF--FGKG------VSTCATCDGFFYKN 147
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV---DEEIAKKAF--HLLNKQG 625
K++ ++G G LE + S++ + + DE A + + +
Sbjct: 148 KEVAVLGGGDTALEEALYLANICSKIYL----------IHRRDEFRAAPSTVEKVKKNEK 197
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLN--I 682
+ +I + + ++ +K V ++ + IF +G L
Sbjct: 198 IELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIF----TFVGLNVRNEILKQDD 253
Query: 683 DKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
K + E + V+ +T++ ++A GD+
Sbjct: 254 SKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLR 286
Score = 34.0 bits (79), Expect = 0.19
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
N DV +IG GP G A + + G K + E
Sbjct: 2 NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFE 35
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex,
oxidoreductase; HET: FAD NAD; 1.80A {Thermus
thermophilus}
Length = 40
Score = 52.6 bits (127), Expect = 2e-09
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 102 IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVL 140
+ MP+A++++ + + +++ GTG GRI+KEDV++ L
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQ-GTGLGGRILKEDVMRHL 38
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 59.1 bits (144), Expect = 2e-09
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 46/207 (22%)
Query: 528 KETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCI 575
AK +I+ATG+ R G+ ++N KG V KK+ +
Sbjct: 107 NGEYRAKAVILATGADPRKL-GIPGEDNF--WGKG------VSTCATCDGFFYKGKKVVV 157
Query: 576 IGAGVIGLEIGSIWRRLGSEVTIL----EMSSNFLNTVDEEI-AKKAFHLLNKQGLNIIL 630
IG G +E G + EVT++ + + ++ +AF + I
Sbjct: 158 IGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------NKVAQARAF---ANPKMKFIW 207
Query: 631 NTKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
+T + +I ++V + N T +E+ +F I IG +PNT K +
Sbjct: 208 DTAVEEI-QGADSVSGVKLRNLKTGEVSELATDGVF----IFIGHVPNTA---FVKDTVS 259
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVV 715
+ ++ ++ V D TNIP ++A GDV
Sbjct: 260 LRDDGYVDVRDEIYTNIPMLFAAGDVS 286
Score = 35.6 bits (83), Expect = 0.060
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASI 407
M+ ++DV++IG GP G A+I
Sbjct: 1 MTAPTAHDYDVVIIGGGPAGLTAAI 25
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 53.9 bits (130), Expect = 2e-09
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
L + ++G V + ++E K+I+ L + G + K I G+++ + V+A ++
Sbjct: 15 KLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARLE 73
Query: 79 TD 80
D
Sbjct: 74 LD 75
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex,...; protein-protein interaction,
redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB:
1zwv_A
Length = 58
Score = 53.0 bits (128), Expect = 2e-09
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 95 DIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQE 152
+IK T+ P+ + + +NN+++S++ G+GKDGRI+KED+L L +
Sbjct: 2 EIKGRKTLATPAVRNLAMENNIKLSEVV-GSGKDGRILKEDILNYLEKQTLEHHHHHH 58
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 59.4 bits (144), Expect = 3e-09
Identities = 41/285 (14%), Positives = 80/285 (28%), Gaps = 57/285 (20%)
Query: 495 LFKKNKIKFFHGHAIFTGKI--QNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGV 550
++ I F A +I + I T+ Y++IATG K PG
Sbjct: 68 YVERKGIHFIAQSAE---QIDAEAQ----NITLADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 551 KFDENLILSNKGAL----------EMINVPKKLCIIGAGVIG---------LEIGSIWRR 591
E + S ++ P + I + + S ++
Sbjct: 121 DPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKK 180
Query: 592 LG-----SEVTILEMSSNFLNTVDEEIAKKAFHL---LNKQGLNIILNTKIHDIKINKEN 643
G T + + + + L L ++G+ N K+ ++ NK
Sbjct: 181 RGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMY 240
Query: 644 VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE- 702
V T + + + I + + N F++V+++
Sbjct: 241 VTQVDEKGETIKEMVLP---VK-FGMMIP--AFKGVPAVAGVEGLCNPGGFVLVDEHQRS 294
Query: 703 TNIPNIYAIGDVV------------RGPMLAHKAEEEGIMVAEHI 735
NI+A G + P + E +I
Sbjct: 295 KKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNI 339
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia
coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A
2btg_A 2bth_A 2cyu_A
Length = 51
Score = 52.3 bits (126), Expect = 3e-09
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 100 NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
N + P+ +++L+++NL+ S I GTG GR+ +EDV K L+
Sbjct: 9 NDALSPAIRRLLAEHNLDASAIK-GTGVGGRLTREDVEKHLAK 50
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme,
transcarboxylase, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 52.1 bits (125), Expect = 2e-08
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 14 SISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQV 73
S S L + ++G V + ++E K+I+ L + G + K I G+++ + V
Sbjct: 22 SPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCV 80
Query: 74 IALIDTD 80
+A ++ D
Sbjct: 81 VARLELD 87
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 55.9 bits (136), Expect = 3e-08
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 42/187 (22%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG--------GTC--T 436
M++ + I+IGAG G + +LA+LG + +G G C T
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVF------DNGKKIGRKILMSGGGFCNFT 54
Query: 437 NVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF-- 494
N+ P+ L Q H F VK++ Y T ++L + + + G LF
Sbjct: 55 NLEVTPAHYLSQNPH-F--VKSALARY---TNWDFISL---VAEQGITYHEKELGQLFCD 105
Query: 495 ------------LFKKNKIKFFHGHAIFT-GKIQNNFHEIQIINKTKETITAKYIIIATG 541
K K + +IQN+ ++ K +I+ATG
Sbjct: 106 EGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG 165
Query: 542 SKARSFP 548
S P
Sbjct: 166 GL--SMP 170
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 56.4 bits (136), Expect = 4e-08
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 664 FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN-DNCETNIPNIYAIGDVVRGPMLAH 722
D ++ A G + + +K N + V+ + +T+ P ++A GD+V
Sbjct: 431 ADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTV 490
Query: 723 KAEEEGIMVAEHI 735
++ +G + +I
Sbjct: 491 ESVNDGKQASWYI 503
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 55.8 bits (135), Expect = 5e-08
Identities = 58/395 (14%), Positives = 115/395 (29%), Gaps = 105/395 (26%)
Query: 375 GREAVLSLMSFIMNKNFD---VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL 431
G E + V+V+GAGP G A+ L G+ + + L
Sbjct: 373 GEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAE--AGRD----L 426
Query: 432 GGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
GG T +P + V + +L N+
Sbjct: 427 GGRVTQESALPGLSAWG--------------------RVKEYREAVLAELPNV------- 459
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAK---YIIIATGSKARSFP 548
+I + T + I ++I ATG+ R+
Sbjct: 460 --------EIYR--ESPM-----------------TGDDIVEFGFEHVITATGATWRTDG 492
Query: 549 GVKFDENLILSNKG-----ALEMIN----VPKKLCIIGAG--VIGLEIGSIWRRLGSEVT 597
+F + +G ++ KK+ + +G + + + G EV+
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552
Query: 598 ILEMSSNFLNTVDEEIAKKAFHL---LNKQGLNIILNTKIHDIKINKENVLINYSNKSTN 654
I+ + + + + L + G+ + + + + V + + +
Sbjct: 553 IVTPGAQVSS--WTNNTFEVNRIQRRLIENGVARVTDHAVV--AVGAGGVTV--RDTYAS 606
Query: 655 VKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDV 714
++ E+ D +++ R+P E +V I ++ IGD
Sbjct: 607 IEREL---ECDAVVMVTARLPR-------------EELYLDLVARRDAGEIASVRGIGDA 650
Query: 715 VRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPF 749
P A G AE S + +PF
Sbjct: 651 WA-PGTIAAAVWSGRRAAEEFDAVLPSN--DEVPF 682
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; E3_binding domain; NMR {Homo
sapiens}
Length = 70
Score = 49.4 bits (118), Expect = 6e-08
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 93 KKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
++IK T+ P+ +++ +NN+++S++ G+GKDGRI+KED+L L
Sbjct: 8 HQEIKGRKTLATPAVRRLAMENNIKLSEVV-GSGKDGRILKEDILNYLEK 56
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; misfolded dimer,
acyltransferase, glycolysis; NMR {Escherichia coli}
Length = 85
Score = 49.6 bits (119), Expect = 7e-08
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ EV +P + E K G+ V ++LI +E DK +E+PAP G++ ++ +
Sbjct: 2 VKEVNVPDIVEVTE------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 55
Query: 63 TDGSIVTSNQVIALIDTDISKLSSKTEIK 91
G V + +I + + + + ++ +
Sbjct: 56 NVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 1e-07
Identities = 57/385 (14%), Positives = 116/385 (30%), Gaps = 138/385 (35%)
Query: 160 SISIKNNSRLEECVPMSRLRLCIAERLLQS-----QANSAILTTFNEINMQSIIDLRLKY 214
+++ + S LE + + IA +L + + +E + +L K+
Sbjct: 8 PLTLSHGS-LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP--TTPAELVGKF 64
Query: 215 KDKFEKEHNVKLGFMSFFVKAVVSALKQY-PIINASVD--------GNNIIYHKYYDIGI 265
LG++S V+ S + Q+ ++N + GN+I H
Sbjct: 65 -----------LGYVSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDI--H------- 102
Query: 266 AISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGS 325
L +L+ DT ++ ++ I +I A+
Sbjct: 103 ------ALAAKLLQENDT-TLVKTKELIKNYI-TAR-----------------------I 131
Query: 326 MLSTPIINPPQSAIL-GVHAIKKRVIVE-----NNNVVIRPINYFA-LS--YD------H 370
M P SA+ V +++ N + +YF L Y
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD------DYFEELRDLYQTYHVLVG 185
Query: 371 RIIDGREAVLSLMS-------FIMNKNFDVIVIGAGPG-----GYVAS-------IRLAQ 411
+I LS + + + +++ P Y+ S I + Q
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 412 LG-FKTAC-IDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469
L + + + E L G + + + + + S+E SFF
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE----SFFV------- 294
Query: 470 VTLNLQKMLERKNNIIKKNNSGILF 494
+++K + +LF
Sbjct: 295 ---SVRKAIT------------VLF 304
Score = 46.6 bits (110), Expect = 4e-05
Identities = 59/327 (18%), Positives = 106/327 (32%), Gaps = 123/327 (37%)
Query: 105 PSAKKIL--SDNNLE------ISKI--NNGT-------GKDGRIIKEDVLKVLSSIKNIN 147
+A+ + +DN+ + I I NN G+ G+ I+E+ ++
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 148 EEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANS--AILTTFNEINMQ 205
+ K EK ++ S R E+ L +Q + A+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEK------------GLLSATQ-FTQPALTL-------- 1738
Query: 206 SIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPII--NASVDGNNIIYHKYYDI 263
M KA LK +I +A+ G H
Sbjct: 1739 -----------------------ME---KAAFEDLKSKGLIPADATFAG-----H----- 1762
Query: 264 GIAISSSRG----LVVPILRNADTMSIADIEKKIN---EFINKAQDNKLLPEEMSGGTFT 316
S G L AD MSI + + + + A +P + G
Sbjct: 1763 ------SLGEYAALASL----ADVMSIESLVEVVFYRGMTMQVA-----VPRDELGR--- 1804
Query: 317 ISNGGVFGSMLSTPIINPPQ-SAILGVHAIKKRV--IVENNNVVIRPINY------FALS 367
SN G+ INP + +A A++ V + + ++ +NY + +
Sbjct: 1805 -SNYGMIA-------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 368 YDHRIIDGREAVLSLMSFIMNKNFDVI 394
D R +D V ++++FI + D+I
Sbjct: 1857 GDLRALD---TVTNVLNFIKLQKIDII 1880
Score = 45.0 bits (106), Expect = 1e-04
Identities = 54/339 (15%), Positives = 99/339 (29%), Gaps = 105/339 (30%)
Query: 444 KALLQTSHS----FENVKNSFFE-YGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKK 498
L +TS + + N F + YG + + I+ N + F
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILD--------------IVINNPVNLTIHFGG 1678
Query: 499 NKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS--FPGVKFDENL 556
K K +I+ N+ + + + I + S F ++ L
Sbjct: 1679 EKGK----------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS---EKGL 1725
Query: 557 I-----------LSNKGALEMI----NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
+ L K A E + +P A G S LG E L
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPA-----DATFAGH---S----LG-EYAALAS 1772
Query: 602 SSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT 661
++ ++ ++ +G+ + E NY + N +
Sbjct: 1773 LADVMSIES------LVEVVFYRGM------TMQVAVPRDELGRSNYGMIAINP-GRVAA 1819
Query: 662 SIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI--IVNDNCETNIPNIYAI-GDVVRGP 718
S + L + ++++G ++ IVN N E Y GD+
Sbjct: 1820 SFSQEALQYV----------VERVG---KRTGWLVEIVNYNVE---NQQYVAAGDL---- 1859
Query: 719 MLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEI 757
+A + V I QK I+ L + E+
Sbjct: 1860 ----RALDTVTNVLNFIKLQK--IDIIELQ-KSLSLEEV 1891
Score = 40.8 bits (95), Expect = 0.002
Identities = 61/354 (17%), Positives = 112/354 (31%), Gaps = 104/354 (29%)
Query: 76 LIDTDI----SKL---SSKTEIKNKKDIKN----LNTIVMPSAKKILS-------DNNLE 117
L DI +KL + T +K K+ IKN P KK S + N +
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 118 ISKINNGTGKDGRIIKEDVLKVLSSIKNIN---EEKQEKYKPYLDSISIKNNSRLEECVP 174
+ I G G N + EE ++ Y+ Y + + + +
Sbjct: 156 LVAIFGGQG------------------NTDDYFEELRDLYQTY--------HVLVGDLIK 189
Query: 175 MSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLR--LKYKDKFEKEHNVKLGFMSFF 232
S L L+++ ++ + F +++ L+ + +
Sbjct: 190 FSAETL---SELIRTTLDAEKV--F-----TQGLNILEWLENPSNTPDK--------DYL 231
Query: 233 VKAVVS-------ALKQYPIINASVDGNNIIYHKYYDIGIAISS-SRGLVVPILRNADTM 284
+ +S L Y ++ A + G + + S+GLV + A+T
Sbjct: 232 LSIPISCPLIGVIQLAHY-VVTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAI-AETD 287
Query: 285 SIADIEKKINEFIN-------KAQD---NKLLPEEMSGGTFTISNG-GVFGSMLSTPIIN 333
S + + I + + N LP + ++ N GV MLS I N
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSPMLS--ISN 343
Query: 334 PPQSAILGVHAIKK--RVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
Q + + K + V I +N + ++ G SL
Sbjct: 344 LTQEQVQD--YVNKTNSHLPAGKQVEISLVN----GAKNLVVSG--PPQSLYGL 389
Score = 33.1 bits (75), Expect = 0.52
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 35/115 (30%)
Query: 1 MALIEVKIPKLSESISEATLLNW----HKKEGELV-VRNENLIDIETDKVILELPAPQDG 55
+I + +++ S S+ L K+ G LV + N N+ Q
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV------------ENQQ-- 1852
Query: 56 IINKIIITDGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNTIVMPSAKKI 110
V + + AL DT + L+ IK +K I + S +++
Sbjct: 1853 -----------YVAAGDLRAL-DTVTNVLN---FIKLQK-IDIIELQKSLSLEEV 1891
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 52.5 bits (126), Expect = 4e-07
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 387 MNKN-FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M + DV+VIGAGP G VA+ + + GFK ++
Sbjct: 1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVE 35
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 51.6 bits (124), Expect = 9e-07
Identities = 63/407 (15%), Positives = 116/407 (28%), Gaps = 141/407 (34%)
Query: 375 GREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
E + ++ + KN + V+GAGP G +I A G + D +E +GG
Sbjct: 360 CHETKMPILPAVQKKN--LAVVGAGPAGLAFAINAAARGHQVTLFD--AHSE----IGGQ 411
Query: 435 CTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF 494
IP K Y ++M+E +K N
Sbjct: 412 FNIAKQIPGKEEFY----------ETLRY----------YRRMIEVTGVTLKLN------ 445
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITA-KYIIIATGSKAR--SFPGVK 551
H + T + + A I+A+G R G+
Sbjct: 446 ------------------------HTV-----TADQLQAFDETILASGIVPRTPPIDGI- 475
Query: 552 FDENLILSNKGALEMIN----VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
D +LS L+++ V K+ IIG G IG + + G +
Sbjct: 476 -DHPKVLS---YLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEW 531
Query: 608 TVDEEIAKKAF--------------------------------------HLLNKQGLNII 629
+D + + L +G+ +I
Sbjct: 532 GIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMI 591
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689
KI+ + + + + ++ + D ++I G+ PN
Sbjct: 592 PGVSY--QKIDDDGLHVVINGETQVLA-------VDNVVICAGQEPNRA----------- 631
Query: 690 NENNFIIVNDNCETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHI 735
+ + ++ IG + A +A +G +A I
Sbjct: 632 -------LAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671
Score = 33.5 bits (77), Expect = 0.40
Identities = 51/268 (19%), Positives = 90/268 (33%), Gaps = 58/268 (21%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF---LNTVDEEIAKKAFHLLNKQGL 626
K L ++GAG GL G +VT+ + S N IAK+ K+
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN-----IAKQIPG---KEEF 424
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
L I+ V + + V + + + FD+ ++A G +P T ID I
Sbjct: 425 YETLRYYRRMIE--VTGVTLKL---NHTVTADQLQA-FDETILASGIVPRT--PPIDGID 476
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHK------AEEEGIMVAEHISGQKH 740
P + + DV+R G A ++S
Sbjct: 477 H------------------PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGE 518
Query: 741 SINFNALPFVI---YTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGM- 796
S + N F + G + Q ++ + + A+ + LG+T+G
Sbjct: 519 STSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWI 578
Query: 797 ---------VKILSDMKSDEIL--GIHI 813
VK++ + +I G+H+
Sbjct: 579 HRTTLLSRGVKMIPGVSYQKIDDDGLHV 606
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 51.1 bits (122), Expect = 1e-06
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 387 MN---KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M+ + FD+IVIG GPGG + +A G + ++
Sbjct: 1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLE 37
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 50.9 bits (122), Expect = 1e-06
Identities = 48/286 (16%), Positives = 91/286 (31%), Gaps = 64/286 (22%)
Query: 495 LFKKNKIKFFHGHAIFTGKI--QNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGV 550
+ I+F G KI +++ + + Y+I+ G+ + G
Sbjct: 65 ALPEKGIQFQEGTVE---KIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGW 121
Query: 551 ---------------------KFDENLILSNKGALEMINVPKKL------------CIIG 577
F I G + PK C
Sbjct: 122 DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGP 181
Query: 578 AGVIGLEIGSIWRRLG----SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTK 633
+ L + +++ G VT+ +L+ + K + N+ G+ ++ N K
Sbjct: 182 VFEMSLMLHGYFKKKGMLDKVHVTVFS-PGEYLSDLSPNSRKAVASIYNQLGIKLVHNFK 240
Query: 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV-NEN 692
I +I + + + K I D + I + P T N + + ++
Sbjct: 241 I--KEIREHEI--------VDEKGNTIP--AD-ITILLP--PYTGNPALKNSTPDLVDDG 285
Query: 693 NFIIVNDNCE-TNIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHI 735
FI + N N+YA+GD P L + A G + A+H+
Sbjct: 286 GFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHL 331
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 51.0 bits (123), Expect = 1e-06
Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 48/210 (22%)
Query: 366 LSYDHRIIDGREAVLSLMSF--IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423
+ + H G + + F ++ + DV++IGAG G + +I + G + I
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVI---- 56
Query: 424 DNEENFALG--------GTC--TNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLN 473
+ A G G C TN+ P L H F K++ Y +
Sbjct: 57 --DHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPH-F--CKSALARY---RPQDFVA 108
Query: 474 LQKMLERKNNIIKKNNSGILF--------------LFKKNKIKFFHGHAIFT-GKIQNNF 518
L +ER + G LF K+ ++ +I + + F
Sbjct: 109 L---VERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGF 165
Query: 519 HEIQIINKTKETITAKYIIIATGSKARSFP 548
+ + T+ A +++A+G K S P
Sbjct: 166 ----RVTTSAGTVDAASLVVASGGK--SIP 189
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 46.1 bits (110), Expect = 1e-06
Identities = 17/79 (21%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
AL+E+K+P + ++ G+ + ++ LI +ETDK +++PA G++ ++
Sbjct: 1 ALVELKVPDIGGH-ENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK 59
Query: 62 ITDGSIVTSNQVIALIDTD 80
+ G ++ +I +++ +
Sbjct: 60 VKVGDKISEGGLIVVVEAE 78
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 50.2 bits (121), Expect = 1e-06
Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 28/202 (13%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNK-----------GALEMINVPKKLCIIG 577
+ I A +I+A G+ A+ ++ GA + K L +IG
Sbjct: 109 KAILADAVILAIGAVAKRL-SFVGSGEVLGGFWNRGISACAVCDGAAPIFR-NKPLAVIG 166
Query: 578 AGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNKQGLNIILNTKIH 635
G +E + + GS+V I+ D A K L+ +++I N+ +
Sbjct: 167 GGDSAMEEANFLTKYGSKVYIIHRR-------DAFRASKIMQQRALSNPKIDVIWNSSVV 219
Query: 636 DIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNF 694
+ + E ++ K NV T ++ + L AIG P T G++++ + +
Sbjct: 220 EAYGDGERDVLG-GLKVKNVVTGDVSDLKVSGLFFAIGHEPATK---FLDGGVELDSDGY 275
Query: 695 IIVN-DNCETNIPNIYAIGDVV 715
++ +T++P ++A GDV
Sbjct: 276 VVTKPGTTQTSVPGVFAAGDVQ 297
Score = 32.9 bits (76), Expect = 0.40
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLA 410
M+ + N + ++G+GP + A+I A
Sbjct: 1 MNGLETHNTRLCIVGSGPAAHTAAIYAA 28
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 50.6 bits (121), Expect = 1e-06
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 387 MNK-NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445
M + +DV++IG G G A+ +L++ G K +D N C +
Sbjct: 2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS---KPWNRIGDKPCG--DAVSKAH 56
Query: 446 L 446
Sbjct: 57 F 57
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 45.3 bits (108), Expect = 2e-06
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ EV +P + E + K G+ V ++LI +E DK +E+PAP G++ ++ +
Sbjct: 2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59
Query: 63 TDGSIVTSNQVIALIDTD 80
G V + +I + + +
Sbjct: 60 NVGDKVKTGSLIMIFEVE 77
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 49.5 bits (119), Expect = 2e-06
Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 34/202 (16%)
Query: 529 ETITAKYIIIATGSKAR--SFPGVKFDENLILSNKG--------ALEMINVPKKLCIIGA 578
E +T II+ATG+ A+ PG E KG I K L +IG
Sbjct: 127 EPVTTDAIILATGASAKRMHLPG----EE-TYWQKGISACAVCDGAVPIFRNKPLAVIGG 181
Query: 579 GVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNKQGLNIILNTKIHD 636
G E + GS+V +L D A + + I+ NT +
Sbjct: 182 GDSACEEAQFLTKYGSKVFMLVRK-------DHLRASTIMQKRAEKNEKIEILYNTVALE 234
Query: 637 IKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNF 694
K + + + + N N +T++ ++ +F AIG P T I + +E +
Sbjct: 235 AKGDGKLLNALRIKNTKKNEETDLPVSGLF----YAIGHTPATK---IVAGQVDTDEAGY 287
Query: 695 IIVN-DNCETNIPNIYAIGDVV 715
I + T++P +A GDV
Sbjct: 288 IKTVPGSSLTSVPGFFAAGDVQ 309
Score = 29.8 bits (68), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 376 REAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLA 410
++ S + NK V +IG+GP + A+I LA
Sbjct: 11 SSGLVPRGSHVHNK---VTIIGSGPAAHTAAIYLA 42
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 49.8 bits (119), Expect = 2e-06
Identities = 30/232 (12%), Positives = 78/232 (33%), Gaps = 38/232 (16%)
Query: 527 TKETITAKYIIIATGSKAR----SFPGV---KFDENLILSNKGALEMINVPKKLCIIGAG 579
T ET A YI +ATG G+ + ++ + + +IG
Sbjct: 126 TTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKG----------QYVVIGGN 175
Query: 580 VIGLEIGSIWRRLGSEVTILEMSSNFLN-------TVDEEIAKKAFHLLNK-QGLNIILN 631
G + + GS++ + ++ + + ++ +++ + + + ++
Sbjct: 176 ESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVH 235
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
+ DI N I++ + + + + + +L I +
Sbjct: 236 YTVKDIDFNNGQYHISFDSG------QSVHTPHEPILATGFDATKNP---IVQQLFVTTN 286
Query: 692 NNFIIVNDNCETNIPNIYAIGDVVRGPMLA----HKAEEEGIMVAEHISGQK 739
+ + + T PNI+ IG V +K ++A ++ ++
Sbjct: 287 QDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQRE 338
Score = 43.6 bits (103), Expect = 2e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
++ V +IGAG G +I L G I E
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILE 35
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 49.6 bits (119), Expect = 2e-06
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
+ +DV+V+G GPGG A+ A+ G KT I++
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEK 35
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 49.4 bits (117), Expect = 3e-06
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIP 442
DVI++GAG G A+ +A+ K I E + A GG G +
Sbjct: 60 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII------ESSVAPGGGSWLGGQLF 113
Query: 443 SKALLQT 449
S +++
Sbjct: 114 SAMVMRK 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 3e-06
Identities = 71/461 (15%), Positives = 143/461 (31%), Gaps = 155/461 (33%)
Query: 448 QTSHSFENVKNSF---FEYGINTQNVTLNLQKMLERK--NNIIKKNN--SGILFLF---- 496
+ + ++++ + F F + ++V + +L ++ ++II + SG L LF
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 497 --KKNKIKFFHGHAIFTGKIQNNF----HEIQIINKTKETITAKYI--IIATGSKARSFP 548
++ ++ F ++ N+ I+ + +T YI + + F
Sbjct: 73 SKQEEMVQKF-----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 549 GVKFD---ENLILSNKGALEMINVPKKLCI---IGAG--VIGLEI------------GSI 588
K++ L + AL + K + I +G+G + L++
Sbjct: 128 --KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 589 WRRLG---SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL 645
W L S T+LEM L +D + + NI L IH I+ +L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLR--IHSIQAELRRLL 238
Query: 646 INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705
+ ++ LL+ + N N F N +C+ +
Sbjct: 239 KSKPYENC-------------LLV----LLNVQNAKA----WNA----F---NLSCKILL 270
Query: 706 PNIYA-IGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTE 764
+ + D + HIS HS+ T
Sbjct: 271 TTRFKQVTDFLSAA------------TTTHISLDHHSMTL------------------TP 300
Query: 765 QYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAE 824
+K + + L D+ E+L + P +IAE
Sbjct: 301 DEVK--------SLL-------LKYLDCR------PQDLPR-EVLTTN---PRRLSIIAE 335
Query: 825 AVIAIEFRASSEDIARI---CHV-HPSLSEAMKEAAMSIEN 861
++ + +A HV L+ ++ S+
Sbjct: 336 SI--------RDGLATWDNWKHVNCDKLTTIIE---SSLNV 365
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate; dehydrogenase, multienzyme complex,
oxidoreductase; HET: TDP; 2.0A {Geobacillus
stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A
1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Length = 49
Score = 43.7 bits (104), Expect = 4e-06
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 104 MPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
MPS +K + ++I + GTGK+GR++KED+ L+
Sbjct: 10 MPSVRKYAREKGVDIRLVQ-GTGKNGRVLKEDIDAFLAG 47
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding
domain, ultrafast folding, homologues,; NMR {Pyrobaculum
aerophilum} PDB: 1w4j_A 1w4k_A
Length = 62
Score = 43.9 bits (104), Expect = 4e-06
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 104 MPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK 138
MP+A+++ + +++SK+ GTG G I EDV +
Sbjct: 8 MPAARRLAKELGIDLSKVK-GTGPGGVITVEDVKR 41
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 48.7 bits (117), Expect = 4e-06
Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 39/203 (19%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCII 576
+T A+ +I+A G+ AR + V ++ L +G V + + +I
Sbjct: 111 QTHRARAVILAMGAAAR-YLQVPGEQEL--LGRG------VSSCATCDGFFFRDQDIAVI 161
Query: 577 GAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNKQGLNIILNTKI 634
G G +E + R VT++ DE A K N + + N +
Sbjct: 162 GGGDSAMEEATFLTRFARSVTLVHRR-------DEFRASKIMLDRARNNDKIRFLTNHTV 214
Query: 635 HDIKINKENVLINYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693
+ + + + +T +T + +T +F +AIG P + + + + V+ +
Sbjct: 215 VAVDGDTTVTGLRVRDTNTGAETTLPVTGVF----VAIGHEPRSG---LVREAIDVDPDG 267
Query: 694 FIIVNDN-CETNIPNIYAIGDVV 715
+++V T++P ++A GD+V
Sbjct: 268 YVLVQGRTTSTSLPGVFAAGDLV 290
Score = 29.4 bits (67), Expect = 5.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 392 DVIVIGAGPGGYVASIRLA 410
DVIVIG+GP GY A++ A
Sbjct: 16 DVIVIGSGPAGYTAALYAA 34
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 48.8 bits (116), Expect = 6e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
V +IG GP G VA + L +LG +
Sbjct: 20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYE 53
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1
PDB: 1iyv_A
Length = 79
Score = 43.4 bits (103), Expect = 1e-05
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80
K G+L+ + L+ +E+ K +E+P+P+ G++ + + G + I ++
Sbjct: 21 KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 47.7 bits (113), Expect = 1e-05
Identities = 54/344 (15%), Positives = 93/344 (27%), Gaps = 81/344 (23%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV +IG GP G A++ L Q A I+ E LGG +
Sbjct: 110 DVAIIGGGPAGIGAALELQQ-YLTVALIE------ERGWLGGD-----------MWLKGI 151
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
E + + + N + L +F K +
Sbjct: 152 KQEGFNKDSRKVVEEL---------VGKLNENTKIYLETSALGVFDKGEYFLVPVV---- 198
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPK 571
I AK +++ATG+ + D + ALE++N
Sbjct: 199 ------------RGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMN--- 243
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
+ +E+ ++
Sbjct: 244 ----------------------VWEVAPGRKVAVTGSKADEVIQELERWGIDY------- 274
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
I ++K + N + N + ++ D L+ A GR P+ N + L+
Sbjct: 275 VHIPNVKRVEGNEKVERVIDMNNHEYKV-----DALIFADGRRPDINPITQAGGKLRFRR 329
Query: 692 NNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+ V D IY G + EG +V +I
Sbjct: 330 GYYSPVLDEYHRIKDGIYVAGS-AVSIKPHYANYLEGKLVGAYI 372
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 47.5 bits (112), Expect = 1e-05
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID---EWKDNEEN 428
+VIG+G GG VA++RL Q G T ++ W +
Sbjct: 12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSD 52
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 47.1 bits (111), Expect = 2e-05
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M+ +DV+++G+GP G + L G+K A D
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 47.0 bits (111), Expect = 2e-05
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID---EWKDNEEN 428
+VIG G G V+++RL + G +T ++ W +
Sbjct: 6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPD 46
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 45.6 bits (109), Expect = 4e-05
Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 45/210 (21%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCII 576
T +IIATG+ AR G+ +E +G V +K+ +I
Sbjct: 101 GEYTCDALIIATGASARYL-GLPSEEAFK--GRG------VSACATSDGFFYRNQKVAVI 151
Query: 577 GAGVIGLEIGSIWRRLGSEVTIL----EMSSNFLNTVDEEI-AKKAFHLLNKQGLNIILN 631
G G +E + SEV ++ + E+I K+ + + + N
Sbjct: 152 GGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------EKILIKRLMDKVENGNIILHTN 204
Query: 632 TKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690
+ ++ ++ V + + + E + L +AIG PNT + ++ L+
Sbjct: 205 RTLEEVTGDQMGVTGVRLRDTQNSDNIESLD--VAGLFVAIGHSPNTA-IFEGQLELE-- 259
Query: 691 ENNFIIVN-----DNCETNIPNIYAIGDVV 715
N +I V + +T+IP ++A GDV+
Sbjct: 260 -NGYIKVQSGIHGNATQTSIPGVFAAGDVM 288
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 44.9 bits (107), Expect = 7e-05
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ + DV++ G G GG + + L + G + ++
Sbjct: 3 TDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVE 36
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 45.0 bits (105), Expect = 9e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604
PK++ I+GAG+ GL G + R G +VTILE ++N
Sbjct: 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANAN 78
Score = 32.6 bits (73), Expect = 0.47
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFK 415
++++GAG G VA L + G
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAGHD 69
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 44.6 bits (105), Expect = 1e-04
Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 40/188 (21%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEE-NFALGGTCTNVGCIP---- 442
N IVIG GP G A + LAQ+GF ++ K+ E G P
Sbjct: 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNV 164
Query: 443 ----------SKALLQTSHSFEN-----VKNSFFEYGINTQ--------NVTLNLQKMLE 479
S L + N V F E G + T L M+E
Sbjct: 165 QFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIE 224
Query: 480 RKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIA 539
+ I + I F + + + G + E I ++++++A
Sbjct: 225 KMRATIIELGGEIRFSTRVDDLHMEDGQITG------------VTLSNGEEIKSRHVVLA 272
Query: 540 TGSKARSF 547
G AR
Sbjct: 273 VGHSARDT 280
Score = 28.8 bits (64), Expect = 9.8
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 695 IIVNDNCET-NIPNIYAIGD---VVRGPMLAHKAEEEGIMVAEHI 735
I + ++ N+ Y G+ G + A +GI VAE +
Sbjct: 497 IKRGKDFQSVNLKGFYPAGEGAGYAGGIL---SAGIDGIKVAEAV 538
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 44.3 bits (105), Expect = 1e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
+ DV+V+G+G G+ A+I G K I E+ +GG
Sbjct: 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILI------EKEPVIGG 163
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 44.1 bits (103), Expect = 2e-04
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M++ +DVIV+G G + S ++ G K +D
Sbjct: 1 HHMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMD 36
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 43.9 bits (104), Expect = 2e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKT 416
+V+GAG GG +A LA+ G +
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEI 26
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 44.1 bits (105), Expect = 2e-04
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 369 DHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEEN 428
+D R + DV+V+GAG G A RL +LG I+ D
Sbjct: 3 GQTTVDSRRQP--------PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD---- 50
Query: 429 FALGGT 434
+GG
Sbjct: 51 --VGGV 54
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 43.5 bits (103), Expect = 2e-04
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M+ DV+VIG G G A L + G +D
Sbjct: 1 MDS-VDVVVIGGGQSGLSAGYFLRRSGLSYVILD 33
Score = 31.6 bits (72), Expect = 1.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 574 CIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603
+IG G GL G RR G IL+ +
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEA 36
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding
protein, E3BD, protein binding; 1.55A {Homo sapiens}
PDB: 2f5z_K
Length = 64
Score = 39.0 bits (90), Expect = 2e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 105 PSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
P+A+ IL ++L+ S+ TG G KED LK++
Sbjct: 14 PAARNILEKHSLDASQGT-ATGPRGIFTKEDALKLVQL 50
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 43.1 bits (102), Expect = 3e-04
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKT 416
+VIGAG GG +++ RL++ G +
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEV 26
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 43.2 bits (101), Expect = 3e-04
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 381 SLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG---TCTN 437
+ +K FD +++GAG G V + RLA G + +D + +GG C +
Sbjct: 20 TTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVD--RRPH----IGGNAYDCYD 73
Query: 438 VGCI 441
+
Sbjct: 74 DAGV 77
Score = 29.7 bits (66), Expect = 4.0
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 543 KARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602
P +E +N + + I+GAG G + G V I++
Sbjct: 2 PMTDLPSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRR 61
Query: 603 S 603
Sbjct: 62 P 62
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 42.8 bits (100), Expect = 3e-04
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWKDNEENFALGGTCTNVGCIPS 443
I DV+V+GAG G A+ +++ + A I E++ + GG G + S
Sbjct: 34 MITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAII------EQSVSPGGGAWLGGQLFS 87
Query: 444 KALLQ 448
+++
Sbjct: 88 AMIVR 92
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 43.2 bits (102), Expect = 3e-04
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ + DV++IG+G G A++ G K ++
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLE 156
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 43.3 bits (103), Expect = 3e-04
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
++DV+V+GAG G A R G + +GG
Sbjct: 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG------VGGV 59
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 43.3 bits (103), Expect = 3e-04
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
+ D +VIGAG G + + Q G K I+ +D +GGT
Sbjct: 7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED------VGGT 47
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 42.9 bits (102), Expect = 3e-04
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRG 717
D ++ A+G P D+ LKV ++V+ TN+ ++A GD+VRG
Sbjct: 368 DLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRG 421
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 42.5 bits (101), Expect = 5e-04
Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG--------GTC--T 436
++DVIVIG GP G +A+I A+ G + ++ LG G C T
Sbjct: 23 NAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLL------DKGNKLGRKLAISGGGRCNVT 76
Query: 437 NVGCIP--SKALLQTSH----SFENVKN----SFFE-YGINTQNVTLNLQKMLERKNN-- 483
N + K + +F N +FFE G+ + +M N
Sbjct: 77 NRLPLDEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKL--KEEDHGRMFPVSNKAQ 134
Query: 484 -IIKKNNSGILFLF--KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIAT 540
++ L K +K + T + +N +I +T E + +++IA
Sbjct: 135 SVVD------ALLTRLKDLGVKIRTNTPVETIEYENG-QTKAVILQTGEVLETNHVVIAV 187
Query: 541 GSKARSFPG 549
G K S P
Sbjct: 188 GGK--SVPQ 194
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 42.7 bits (100), Expect = 5e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQL-----GFKTACID 420
M+ DV+++GAGP G +A+ L++ K ID
Sbjct: 1 MTKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 43
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 42.3 bits (100), Expect = 6e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+++ FD +V+GAG G A+ L++ GF TAC+
Sbjct: 14 VVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACV 47
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 42.3 bits (100), Expect = 7e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACI 419
D +VIG G G A++ Q G T +
Sbjct: 6 CDSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 41.7 bits (97), Expect = 8e-04
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 23/140 (16%)
Query: 327 LSTPIINPPQSAILGVHAIKKRV-----IVENNNVVIRPINYFALSYD---HRIIDGREA 378
+S ++ P L +K + + + +P+ + RE+
Sbjct: 1 MSPSVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAFTFSPIRES 60
Query: 379 VLS-------LMSFIMNKNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENF 429
+S + D++++GAG G A+ L+ L + + E
Sbjct: 61 TVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIV------EAGV 114
Query: 430 ALGGTCTNVGCIPSKALLQT 449
A GG G + S +++
Sbjct: 115 APGGGAWLGGQLFSAMVMRK 134
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 1.94A {Thermus thermophilus}
Length = 40
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 105 PSAKKILSDNNLEISKINNGTGKDGRIIKEDV 136
PS +++ + ++++++ GTG GRI +EDV
Sbjct: 4 PSIRRLARELGVDLTRLR-GTGLAGRITEEDV 34
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 41.4 bits (96), Expect = 0.001
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP 442
M+ ++ +++IGAGP G A++RL +LG+K + E ++ GG
Sbjct: 4 MAELLTP--KIVIIGAGPTGLGAAVRLTELGYKNWHLYE-CNDT----PGGLS------- 49
Query: 443 SKALLQTSHSFENVKNSFFEYGINT 467
SF + ++ G +
Sbjct: 50 --------RSFLDENGFTWDLGGHV 66
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 41.2 bits (97), Expect = 0.001
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
G+ V + +I IE K + + A + G + KI+ +G +V + ++A+I
Sbjct: 1184 AVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 40.9 bits (96), Expect = 0.002
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 387 MNKNFDVIVIGAGPGGYVASI--RLAQLGFKTACID 420
M +++DV+V+G GP G + ++A+ G + ++
Sbjct: 1 MTESYDVVVVGGGPVG--LATAWQVAERGHRVLVLE 34
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
M + + FD +VIGAG G A+++++Q G A +
Sbjct: 1 MKLPVRE-FDAVVIGAGGAGMRAALQISQSGQTCALL 36
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 40.6 bits (95), Expect = 0.002
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKT 416
MS ++K+ + +IGAGP G A + L Q GF
Sbjct: 1 MS--ISKDSRIAIIGAGPAGLAAGMYLEQAGFHD 32
Score = 31.8 bits (72), Expect = 1.00
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRL----GSEVTILEMSS 603
I+ ++ IIGAG GL + L + TILE +
Sbjct: 3 ISKDSRIAIIGAGPAGL---AAGMYLEQAGFHDYTILERTD 40
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 40.7 bits (94), Expect = 0.002
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 366 LSYDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ + H GRE + +++DVI++G G + S L+ G K +D
Sbjct: 1 MHHHHHHSSGREN-----LYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLD 50
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 40.6 bits (96), Expect = 0.002
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRL-AQLGFKTACIDEWKDNEENFALGGT 434
M+ D +VIGAG GG A +L +LG T D+ GGT
Sbjct: 1 MTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG------PGGT 47
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 2.09A {Thermus thermophilus}
Length = 41
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 104 MPSAKKILSDNNLEISKINNGTGKDGRIIKEDV 136
+P+A+K+ + + I ++ G+G GR+ EDV
Sbjct: 4 VPAARKLARELGIPIEEVP-GSGPLGRVRVEDV 35
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 39.1 bits (92), Expect = 0.003
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+ V+++GAG G + LAQ G + +
Sbjct: 2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLL 32
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 40.2 bits (93), Expect = 0.003
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
M+ + VI+IGAG G A+ L Q G + + E
Sbjct: 1 MNTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLE 39
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 39.7 bits (91), Expect = 0.004
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 384 SFIMNKNFDVIVIGAGPGGYVASIRLAQLG 413
+ FD++VIGAG G + L QL
Sbjct: 30 QHFTEEAFDIVVIGAGRMGAACAFYLRQLA 59
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 39.4 bits (92), Expect = 0.004
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 686 GLKVNENNFIIVNDN-CETNIPNIYAIGDVVRGP 718
GL ++ + I N PN Y +G + RGP
Sbjct: 331 GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGP 364
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 39.3 bits (92), Expect = 0.004
Identities = 53/285 (18%), Positives = 95/285 (33%), Gaps = 65/285 (22%)
Query: 495 LFKKNKIKFFHGHAIFTGKI--QNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVK- 551
L K I+F + A I N + ++ + I Y++IATG K G +
Sbjct: 65 LLPKFNIEFINEKAE---SIDPDAN----TVTTQSGKKIEYDYLVIATGPKLV--FGAEG 115
Query: 552 FDENLILSNK---GALEMINVPKKLC------IIGAGV----------IGLEIGSIWRRL 592
+EN S ALE ++L +IGA L + ++
Sbjct: 116 QEEN-STSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKR 174
Query: 593 G--SEVTI-----LEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL 645
G +V + +F + L ++ ++ I N + I + V+
Sbjct: 175 GIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAV--KAIEPDKVI 232
Query: 646 INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV-NENNFIIVNDNCETN 704
+ N T + + K + + + G KV N N +++ + C N
Sbjct: 233 Y----EDLNGNTHEVPA---KFTMFMP--SFQGPEVVASAGDKVANPANKMVIVNRCFQN 283
Query: 705 I--PNIYAIGDVV------------RGPMLAHKAEEEGIMVAEHI 735
NI+ +G V P E+ + VA +I
Sbjct: 284 PTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNI 328
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 39.4 bits (92), Expect = 0.005
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQL 412
DV+++GAGP G A+ RL QL
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQL 57
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 39.5 bits (92), Expect = 0.005
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 392 DVIVIGAGPGGYVASIRLAQL-GFKTACID 420
DV+++G GP G + +LA +T ++
Sbjct: 34 DVLIVGCGPAGLTLAAQLAAFPDIRTCIVE 63
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 39.3 bits (91), Expect = 0.005
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435
K+ ++++GAG G V +LA+ G + ID + + +GG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIID--QRDH----IGGNS 42
Score = 28.5 bits (63), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
KK+ I+GAG G IG G +V I++
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIID 33
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 39.0 bits (90), Expect = 0.005
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLA-QLGFKTACIDEWKDNEENFALGGTC 435
M FD+ V+G+G G + R+A QL + ++ + +GG
Sbjct: 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLE--RRPH----IGGNA 47
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 39.1 bits (90), Expect = 0.006
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
K++ I+GAG GL +G R+ +VT+
Sbjct: 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYT 52
Score = 34.9 bits (79), Expect = 0.11
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDE 421
+ ++GAG G + L Q +
Sbjct: 25 IGIVGAGTAGLHLGLFLRQHDVDVTVYTD 53
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 38.4 bits (90), Expect = 0.008
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGF 414
M++ D+++ GAG GG ++ L Q G
Sbjct: 1 MSEPIDILIAGAGIGGLSCALALHQAGI 28
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 38.5 bits (90), Expect = 0.008
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424
V +IGAGP G + L + G ++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 38.8 bits (90), Expect = 0.008
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
I+ + D++++G G G A+ + K A
Sbjct: 18 IVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPE 51
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 38.6 bits (91), Expect = 0.008
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 381 SLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
S M++++ FDV+VIG G G A++ A++G KTA
Sbjct: 19 SHMAWVV-DEFDVVVIGGGHAGIEAALAAARMGAKTAMF 56
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 38.8 bits (91), Expect = 0.008
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
G V + + L + K+ + +P +G + K+ +T + + +I I+
Sbjct: 666 VAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.009
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 17/40 (42%)
Query: 219 EKEHNVKLGFMSFFVKAVVSALKQY-----P--IINASVD 251
EK+ +K + ++LK Y P I A+++
Sbjct: 18 EKQA----------LKKLQASLKLYADDSAPALAIKATME 47
Score = 36.5 bits (83), Expect = 0.013
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 15/41 (36%)
Query: 133 KEDVLKVLSSIKNINEEKQEKYKPYLDS---ISIKNNSRLE 170
K+ + K+ +S+K Y DS ++I + +E
Sbjct: 19 KQALKKLQASLK--------LYAD--DSAPALAI--KATME 47
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 38.4 bits (90), Expect = 0.009
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 388 NKNFDVIVIGAGPGGYVASI--RLAQLGFKTACIDEWK 423
+ +FDVIV+GAG G + +LA+ G KT +D +
Sbjct: 1 STHFDVIVVGAGSMG--MAAGYQLAKQGVKTLLVDAFD 36
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 38.2 bits (89), Expect = 0.009
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGF 414
+ + +V +IG GP G + L Q G
Sbjct: 23 LLSDKNVAIIGGGPVGLTMAKLLQQNGI 50
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 38.3 bits (89), Expect = 0.010
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFK 415
M+ DV+V+G G G A+ L G
Sbjct: 1 MSNKCDVVVVGGGISGMAAAKLLHDSGLN 29
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 38.3 bits (89), Expect = 0.010
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 544 ARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
A F ++E + + L+ + PK + I+GAG+ GL + G +VT+LE
Sbjct: 8 AECFQENDYEE-FLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE 63
Score = 34.9 bits (80), Expect = 0.12
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFK 415
V+++GAG G A+ LA G +
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQ 58
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 37.1 bits (87), Expect = 0.010
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+DVIV+G GP G A++ LA+ G K +D
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLD 31
Score = 33.3 bits (77), Expect = 0.16
Identities = 3/24 (12%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 528 KETITAKYIIIATGSKARSFPGVK 551
+ A+ +++ T P +
Sbjct: 94 EGVEKAERLLLCTHKDPT-LPSLL 116
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 38.4 bits (89), Expect = 0.012
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437
DV+V+GAGP G A+ ++ G + +D E GGT +
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLD------ERAEAGGTLLD 169
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 38.2 bits (90), Expect = 0.012
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 368 YDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+ H V FDVI+IG G G A++ A++G +T +
Sbjct: 6 HHHHHHHSSGLVPRGSHMFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLL 57
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 37.7 bits (87), Expect = 0.014
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILE 600
M++ K++ ++G+GVIGL S L G V IL
Sbjct: 2 MMHSQKRVVVLGSGVIGL---SSALILARKGYSVHILA 36
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 37.6 bits (88), Expect = 0.014
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFK 415
+ + IVIGAG GG A++ L Q G
Sbjct: 16 ENLYFQGHMKAIVIGAGIGGLSAAVALKQSGID 48
>1z6h_A Biotin/lipoyl attachment protein; solution structure,
biosynthetic protein; HET: BTI; NMR {Bacillus subtilis}
PDB: 1z7t_A 2b8f_A 2b8g_A*
Length = 72
Score = 34.1 bits (79), Expect = 0.017
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80
K G+ + + + + +E+ K+ + + A + GI+ ++ +G V V+ +
Sbjct: 16 KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 37.4 bits (87), Expect = 0.018
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 387 MNKN-FDVIVIGAGPGGYVASIRLAQLG 413
MN + DV+V+GAG GG ++ LA+ G
Sbjct: 1 MNDHEVDVLVVGAGLGGLSTAMFLARQG 28
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 34.7 bits (80), Expect = 0.019
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80
K G+ V ++L+ + K+ + +P+DG + K+ +G+ + + + +
Sbjct: 31 KAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 37.0 bits (85), Expect = 0.021
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435
+D I++G+G G V + L +L K I+ K N +GG
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE--KRNH----IGGNA 40
Score = 29.3 bits (65), Expect = 5.6
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
I+G+G+ G + ++L +V ++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE 31
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 37.3 bits (87), Expect = 0.022
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLG 413
+ VIV+GAGP G + + L G
Sbjct: 12 DASVIVVGAGPAGLMLAGELRLGG 35
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 37.1 bits (86), Expect = 0.023
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFK 415
+D IV+G G G A+ L G K
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKK 26
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 37.2 bits (86), Expect = 0.024
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFK 415
+ V+V+G GP G ++ L + G+K
Sbjct: 9 KGSHSVVVLGGGPAGLCSAFELQKAGYK 36
Score = 30.2 bits (68), Expect = 3.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
+ ++G G GL ++ G +VT+LE
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLE 41
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 37.2 bits (85), Expect = 0.024
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 26/129 (20%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
+ + DV+VIGAGP G A+ RL Q+ + I + + GG
Sbjct: 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVD-SNET----PGGLA------------ 50
Query: 448 QTSHSFENVKNSFFEYG-----INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
+ + ++ G + + L + L ++++ + +
Sbjct: 51 ---STDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWYTHQRIS-YVRCQGQWVP 106
Query: 503 FFHGHAIFT 511
+ + I
Sbjct: 107 YPFQNNISM 115
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 36.9 bits (84), Expect = 0.025
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602
+ IIG G+ GL G +V + + S
Sbjct: 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKS 34
Score = 34.2 bits (77), Expect = 0.14
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M + +IG G G A+ L G + D
Sbjct: 1 MTV--PIAIIGTGIAGLSAAQALTAAGHQVHLFD 32
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 36.9 bits (86), Expect = 0.029
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ DV+V G G G ASI A+ G ++
Sbjct: 39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLE 71
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 36.3 bits (84), Expect = 0.032
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 554 ENLILSNKGALEM------INVPK-KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606
N I + +G + + + ++ ++G G G+ I + LG+ V + SS L
Sbjct: 134 YNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHL 193
Query: 607 NTVDE 611
+ E
Sbjct: 194 ARITE 198
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 36.5 bits (85), Expect = 0.033
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLG 413
+ VIV+GAGP G + + L G
Sbjct: 11 DAAVIVVGAGPAGMMLAGELRLAG 34
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 36.6 bits (85), Expect = 0.033
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 392 DVIVIGAGPGGYVASIRLAQLG 413
DV+V+G GP G + + L G
Sbjct: 51 DVVVVGGGPVGLMLAGELRAGG 72
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 36.7 bits (85), Expect = 0.034
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 391 FDVIVIGAGPGGYVASIRLAQL----GFKTACID 420
D+++IG G G A+ A G K ++
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 36.6 bits (85), Expect = 0.034
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 392 DVIVIGAGPGGYVASIRLAQLG 413
DV+++G GP G ++ LA
Sbjct: 28 DVLILGGGPVGMALALDLAHRQ 49
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 36.7 bits (84), Expect = 0.037
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
N +V+GAGP G A++ LA LG + ++
Sbjct: 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVE 122
Score = 31.3 bits (70), Expect = 1.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605
K ++GAG GL LG+ V ++E F
Sbjct: 94 KCLVVGAGPCGLRAAVELALLGARVVLVEKRIKF 127
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 36.4 bits (85), Expect = 0.037
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 387 MNKNFDVIVIGAGPGGYVASI--RLAQLGFKTACID 420
M ++++ +VIG G G ++I LA+ TA +
Sbjct: 14 MKRHYEAVVIGGGIIG--SAIAYYLAKENKNTALFE 47
Score = 32.6 bits (75), Expect = 0.62
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 574 CIIGAGVIGLEIGSI-WR--RLGSEVTILE 600
+IG G+IG +I + + + E
Sbjct: 21 VVIGGGIIGS---AIAYYLAKENKNTALFE 47
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet,
hammerhead, biocytin, transferase; NMR
{Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1
PDB: 1dd2_A 1o78_A
Length = 77
Score = 33.4 bits (77), Expect = 0.039
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
KEG+ V + ++ +E K+ E+ AP DG + K+++ + V Q + I
Sbjct: 25 KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A
{Homo sapiens}
Length = 94
Score = 33.5 bits (77), Expect = 0.042
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
K G+ V + + IE K+ + A + G + + G V ++ ++
Sbjct: 42 KPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 36.2 bits (84), Expect = 0.047
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ V+V+GAG G+ AS+ + G +D
Sbjct: 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVD 151
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 33.0 bits (76), Expect = 0.049
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
+ G+ V + L+ +E K+ E+P+P+DG++ +I++ +G V + Q + +
Sbjct: 22 RVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 36.0 bits (83), Expect = 0.052
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASI--RLAQLGFK 415
M+ + K+ ++++GAG G S LA+ G+
Sbjct: 1 MA--VTKSSSLLIVGAGTWG--TSTALHLARRGYT 31
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 35.9 bits (84), Expect = 0.062
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 381 SLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
L+ + +DVIV+GAG G A++ +A+ G I
Sbjct: 13 GLVPR-GSHMYDVIVVGAGHAGCEAALAVARGGLHCLLI 50
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 35.1 bits (81), Expect = 0.11
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFK 415
DV ++GAGP G A+ L + G
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLS 30
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 34.8 bits (79), Expect = 0.11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
++ ++DVIV+G G + S L+ G K ID
Sbjct: 8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHID 41
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 35.0 bits (81), Expect = 0.11
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 383 MSFIMN---KNFDVIVIGAGPGGYVASIRLAQLGFK 415
M+ + K V G G G A+I L Q G+
Sbjct: 1 MANVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGWD 36
Score = 31.1 bits (71), Expect = 1.7
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 12/42 (28%)
Query: 570 PKKLCIIGAGV------IGLEIGSIWRRLGSEVTILEMSSNF 605
++ + G G I L ++ G +V + E SS
Sbjct: 11 TRRAEVAGGGFAGLTAAIAL------KQNGWDVRLHEKSSEL 46
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 35.1 bits (80), Expect = 0.11
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
D+I +G GP +I L + ++
Sbjct: 31 HDLIGVGFGPSNIALAIALQERAQAQGALE 60
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 34.6 bits (80), Expect = 0.14
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLG--FKTACI 419
D+ ++GAG G A+I AQ K A I
Sbjct: 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALI 36
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 34.6 bits (80), Expect = 0.14
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 391 FDVIVIGAGPGGYVASI--RLAQLGFKTACID 420
+D+I+IG+G G A+ + G D
Sbjct: 3 YDLIIIGSGSVG--AAAGYYATRAGLNVLMTD 32
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.2 bits (79), Expect = 0.23
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLG 413
M+ + + DV++IG+G G ++RLA
Sbjct: 1 MNTLPEHSCDVLIIGSGAAGLSLALRLADQH 31
Score = 31.1 bits (71), Expect = 1.9
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 695 IIVNDNCETNIPNIYAIGDV 714
++V+D+ T++ +YAIG+V
Sbjct: 357 VMVDDHGRTDVEGLYAIGEV 376
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 33.0 bits (75), Expect = 0.26
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 553 DENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
+L+ S+ ++ + K+ I+G+G + + G +V +
Sbjct: 11 SLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSGFKVVV 56
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 33.6 bits (76), Expect = 0.26
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 393 VIVIGAGPGGYVASIRLAQLG 413
++VIGAGP G V + +L Q
Sbjct: 3 ILVIGAGPAGLVFASQLKQAR 23
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine,
ligase, transferase; HET: BTN; 1.80A {Escherichia coli}
SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 30.7 bits (70), Expect = 0.32
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
+ G+ V + L +E K++ ++ A + G + I++ G V ++ + +I+
Sbjct: 28 EVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 32.8 bits (75), Expect = 0.46
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 689 VNENNFIIVNDNC--ETNIPNIYAIGDVVRG---PMLAHKAEEEGIMVAEHI 735
N+ + V+ + I+ IGD P + A +G + A +
Sbjct: 268 TNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAV 319
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 32.9 bits (75), Expect = 0.47
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFK 415
VIV+GAG G A+ RL++ G
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGIT 29
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 32.7 bits (75), Expect = 0.47
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 566 MINVPKKLCIIGAGV------IGLEIGSIWRRLGSEVTILEMSSNFLNTV 609
M ++ ++G + + L R G +V + E S L+
Sbjct: 1 MSPTTDRIAVVGGSISGLTAALML------RDAGVDVDVYERSPQPLSGF 44
Score = 32.3 bits (74), Expect = 0.61
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGF 414
MS + V+G G A++ L G
Sbjct: 1 MS---PTTDRIAVVGGSISGLTAALMLRDAGV 29
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 33.0 bits (75), Expect = 0.48
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKT 416
+ +DVIVIG G G A+ L GFKT
Sbjct: 37 DGPWDVIVIGGGYCGLTATRDLTVAGFKT 65
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 33.0 bits (75), Expect = 0.49
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
+ ++G G+ GL + R G++ +LE
Sbjct: 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46
Score = 31.1 bits (70), Expect = 1.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKT 416
+V V+G G G + L G
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRGTDA 42
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 32.5 bits (75), Expect = 0.58
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 574 CIIGAGVIGLEIGSIWRRL---GSEVTILE 600
+IGAGV+GL +I R L G EV + E
Sbjct: 8 IVIGAGVVGL---AIARALAAGGHEVLVAE 34
Score = 31.0 bits (71), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 387 MNKNFDVIVIGAGPGGYVASI--RLAQLGFKTACID 420
M+ + D IVIGAG G +I LA G + +
Sbjct: 1 MSTDIDCIVIGAGVVG--LAIARALAAGGHEVLVAE 34
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 32.9 bits (73), Expect = 0.59
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRL--------GSEVTILE 600
++ I+G G G+ RL G +V I E
Sbjct: 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYE 94
Score = 32.5 bits (72), Expect = 0.80
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTA 417
N+ + ++G G GG A L +L
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLAATLP 83
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 32.0 bits (73), Expect = 0.65
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVT 597
K+ I G G +GLE+ G EVT
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVT 30
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 32.6 bits (75), Expect = 0.66
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 26 KEGELVVRNENLIDIETDKVILE-------LPAPQDGIINKIIITDGSIVTSNQVIALID 78
+ G+ V L V+LE + AP G++ + ++G +V + +D
Sbjct: 619 EPGQTVEAGATL-------VVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELD 671
Query: 79 TD 80
+
Sbjct: 672 EN 673
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 32.3 bits (74), Expect = 0.66
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+ I+G+G++G ++ G V + ++ + E I +K L + G
Sbjct: 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENI-RKEMKSLQQSGS 61
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 32.6 bits (73), Expect = 0.67
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 384 SFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
K VI+IG+G G A+ +L G +
Sbjct: 272 PLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLL 307
Score = 31.1 bits (69), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603
K+ IIG+GV GL + G +VT+LE
Sbjct: 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 311
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 32.2 bits (73), Expect = 0.69
Identities = 4/29 (13%), Positives = 6/29 (20%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTIL 599
L G G + G +
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGT 34
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 32.0 bits (72), Expect = 0.84
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFK 415
+ V VIGAG G A+ +L G
Sbjct: 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLN 38
Score = 32.0 bits (72), Expect = 0.94
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
K++ +IGAGV GL + G VT+ E
Sbjct: 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE 43
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 31.6 bits (73), Expect = 0.99
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 570 PKKLCIIGAGVIGLE-----IGSIWRRLGSEVTILEMSSNFLNTVDEE 612
P K+ I+G GV+G E +G LG++V I +++ L+ ++
Sbjct: 167 PGKVVILGGGVVGTEAAKMAVG-----LGAQVQIFDINVERLSYLETL 209
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 31.6 bits (72), Expect = 0.99
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 564 LEMINVPKKLCIIGAGVIGLEIGSI---WRRLGSEVT 597
+ ++ + +CI+G G+IG GS+ V
Sbjct: 2 MTTKDISRPVCILGLGLIG---GSLLRDLHAANHSVF 35
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 31.7 bits (73), Expect = 1.0
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 570 PKKLCIIGAGVIGLE-----IGSIWRRLGSEVTILEMSSNFLNTVDEE 612
P + I+G G +G +G +G++VTIL+++ L +D+
Sbjct: 166 PASVVILGGGTVGTNAAKIALG-----MGAQVTILDVNHKRLQYLDDV 208
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 31.8 bits (71), Expect = 1.0
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 20 LLNWHKKEGELVVRNENLIDIE------TDKVILELPAPQDGIINKIIITDGSIVTSNQV 73
++ + K G + + L+++ T + + L P+DG+ I+ + V
Sbjct: 300 MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVP--ILHFASASVHQGTE 357
Query: 74 IALIDTDISKL 84
+ + T + +L
Sbjct: 358 LYKVMTKVFEL 368
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 31.0 bits (69), Expect = 1.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTI 598
++ I G G +G IG + G EVT
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTY 47
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 31.8 bits (73), Expect = 1.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 695 IIVNDNCETNIPNIYAIGDV 714
I VN E+NI N+YAIG+V
Sbjct: 319 IRVNIRGESNIVNLYAIGEV 338
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 31.8 bits (71), Expect = 1.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
K VI+IG+G G A+ +L G ++
Sbjct: 104 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137
Score = 29.5 bits (65), Expect = 5.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603
K+ IIG+GV GL + G +VT+LE
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.1 bits (70), Expect = 1.3
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
+ ++G G +G+ + + LG++V +
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGAKVKV 183
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 31.4 bits (71), Expect = 1.4
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 686 GLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRGP 718
+ + ++ N ++P +Y G V RGP
Sbjct: 339 SVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP 372
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 31.5 bits (72), Expect = 1.4
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
+ G+ V + L IE K+ L A + G++ KI + G+ + + VI +
Sbjct: 629 EVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.8 bits (69), Expect = 1.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
K+ ++G G +G + LG EVTI
Sbjct: 19 GMKIAVLGTGTVGRTMAGALADLGHEVTI 47
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 31.3 bits (72), Expect = 1.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 570 PKKLCIIGAGVIGLE-----IGSIWRRLGSEVTILEMSSNFLNTVDEE 612
P + +IGAG G G +G+ VT+L+++ + L +D E
Sbjct: 168 PADVVVIGAGTAGYNAARIANG-----MGATVTVLDINIDKLRQLDAE 210
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 30.6 bits (69), Expect = 1.7
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 362 NYFALSYD---HRIIDG--REAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKT 416
+ A ++ + D R ++ + K +V+ +G G G + +L++ G+K
Sbjct: 21 DSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGY--GTYKLSRTGYKA 78
Query: 417 ACID 420
+D
Sbjct: 79 VGVD 82
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.4 bits (68), Expect = 1.7
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
+CI G G G +G + G V
Sbjct: 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVF 47
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 31.1 bits (71), Expect = 1.8
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
G+ V + L+ IE K+ + A +DG I ++++ G + + ++A+
Sbjct: 1112 SSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVY 1163
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 30.6 bits (69), Expect = 1.8
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 364 FALSYD--HRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
A +Y + DG + + V+ + AG G + LG++ ++
Sbjct: 55 AADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRL--TFPFLDLGWEVTALE 111
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 30.9 bits (68), Expect = 1.8
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGS---EVTILEMS 602
++ I+GAG+ G ++ RR S + + + +
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA 36
Score = 30.5 bits (67), Expect = 2.3
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437
V+++GAG G + + L + + W ++ GG T
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVW---DKADDSGGRMTT 45
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 30.9 bits (70), Expect = 1.8
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTDISKL 84
L AP DG+I + G + + V+A I + +
Sbjct: 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKI-QGMDPV 244
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 30.9 bits (70), Expect = 2.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTA 417
V V+GAG G A+ L +LG
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVR 28
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 30.7 bits (69), Expect = 2.2
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 571 KKLCIIGAGVIGL------EIGSIWRRLGSEVTILEMSSN 604
++ I+GAG G+ + E+ E ++
Sbjct: 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD 42
Score = 29.2 bits (65), Expect = 7.6
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435
M + ++GAGP G K A I E E+ GG
Sbjct: 1 MATR--IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQW 47
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.50A {Bacillus halodurans} PDB:
3o3w_A
Length = 144
Score = 29.7 bits (67), Expect = 2.3
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 389 KNFDVIVIGAGPGG---YVASIRLAQLGFKTAC----IDEWKD 424
K +I GP A+ + AQLGF+ I+ W+
Sbjct: 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRK 113
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 30.6 bits (70), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 373 IDGREAVLSLMSFIMNKNFDVIVIGAGPGGYV-ASIRL 409
ID + ++LS S + K +D I+ G G G A+ +L
Sbjct: 7 IDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAA-KL 43
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 30.4 bits (68), Expect = 2.5
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSS 603
+ + ++G G+ GL R +V ++E S
Sbjct: 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
Score = 30.4 bits (68), Expect = 2.8
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLG 413
M + V+V+G G G AS L++
Sbjct: 1 MGRT--VVVLGGGISGLAASYHLSRAP 25
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 30.7 bits (68), Expect = 2.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
M+ + +FDVIVIG G + + ++ G + +D
Sbjct: 1 MADNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDS 39
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 30.7 bits (70), Expect = 2.5
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 376 REAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRL--AQLGFKTACIDEWKDNEENFALGG 433
R+ + MS K D++VIG G G A I L G +T + E D FA G
Sbjct: 7 RDKCIGEMS---EKQLDLLVIGGGITG--AGIALDAQVRGIQTGLV-EMND----FA-SG 55
Query: 434 T 434
T
Sbjct: 56 T 56
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 30.7 bits (70), Expect = 2.6
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
GE V N+ L+ E K+ + AP DG+I ++ + +G + + ++ I+
Sbjct: 1094 SVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1146
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 30.3 bits (69), Expect = 2.9
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
K+ I GAG +G +G + + G++VT ++ I + K GL N
Sbjct: 5 KIAIAGAGAMGSRLGIMLHQGGNDVT-------LIDQWPAHIEA-----IRKNGLIADFN 52
Query: 632 TKIHDIKIN 640
+ +
Sbjct: 53 GEEVVANLP 61
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 30.3 bits (68), Expect = 3.1
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 566 MINVPKKLCIIGAGVIGL------EIGSIWRRLGSEVTILEMSS 603
M + K + IIG G+ GL E + L E+T++E S
Sbjct: 1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 29.9 bits (68), Expect = 3.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 51 APQDGIINKIIITDGSIVTSNQVIAL 76
+P G I + +T+G++VT+ Q A+
Sbjct: 142 SPISGRIGRSAVTEGALVTNGQANAM 167
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated
serine/threonine protein kinase, structural genomics;
NMR {Homo sapiens} SCOP: a.29.10.1
Length = 114
Score = 28.5 bits (63), Expect = 3.6
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 594 SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKST 653
+ L ++ L + +I + A L K G N++ + +++ E +L + +S
Sbjct: 26 APGARLALADGVLGFIHHQIVELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSD 85
Query: 654 NVKTEIITSIFDKLLIAIGR 673
+ + I + KLLI I R
Sbjct: 86 SEEVSFIVQLVRKLLIIISR 105
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 29.9 bits (68), Expect = 3.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 51 APQDGIINKIIITDGSIVTSNQVIAL 76
+P G I K +T+G++V + Q AL
Sbjct: 135 SPISGRIGKSNVTEGALVQNGQATAL 160
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 29.5 bits (66), Expect = 4.0
Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 17/107 (15%)
Query: 60 IIITDGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEIS 119
++I +++T+ + + D SK+S + I + K+I
Sbjct: 60 VLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEI--------- 110
Query: 120 KINNGTGKDGRIIKED--VLKVLSSIKNINEEKQEKYKPYLDSISIK 164
++ D ++++ ++ + S +K
Sbjct: 111 ------LQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLK 151
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 29.8 bits (67), Expect = 4.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 55 GIINKIIITDGSIVTSNQVIALIDTD 80
G I K+ + G V ++A ID+
Sbjct: 41 GKITKLYVKLGQQVKKGDLLAEIDST 66
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 29.5 bits (67), Expect = 4.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTIL 599
+ K+ I+GAG +G G + R G EV ++
Sbjct: 15 LYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI 48
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 29.6 bits (67), Expect = 5.0
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 55 GIINKIIITDGSIVTSNQVIALIDTD 80
G + + + G V +Q++ +ID +
Sbjct: 40 GQLKTLSVAIGDKVKKDQLLGVIDPE 65
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 29.2 bits (66), Expect = 5.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTIL 599
++CI+GAG +G +G+ G + +L
Sbjct: 5 RICIVGAGAVGGYLGARLALAGEAINVL 32
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 29.2 bits (66), Expect = 5.8
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617
++ K + + G G +G R G ++IL+ V E I A
Sbjct: 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED---WAVAESILANA 66
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail,
evolution, structur comparisons, virus-viral protein
complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Length = 602
Score = 29.4 bits (65), Expect = 5.9
Identities = 11/95 (11%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 54 DGIINKIIITDGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNTIVMPSAKKILSD 113
+GI + I + D+ L +K EI ++ D ++ +
Sbjct: 363 NGIPEILHFDSVFEHGDIINITWFNNDLGTLLTKDEIIDETDNLYVSQ-----GPGVDIS 417
Query: 114 NNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINE 148
++ ++ + + ++ + +++ NI +
Sbjct: 418 GDVNLTDFDKIGWPNVEAVQSY-QREFNAVSNIFD 451
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 29.2 bits (66), Expect = 7.5
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
+K+ + ++ + L + EL + +E E+ KV + D
Sbjct: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG---------AVLAKGD 1007
Query: 65 GSIVTSNQVIALID 78
G V + +A D
Sbjct: 1008 GEQVAGGETVANWD 1021
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.5 bits (64), Expect = 8.8
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436
V+V+G GP G + ++ G + + + E +
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK 227
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 28.5 bits (63), Expect = 9.2
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 584 EIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638
E+ + LG + +L+ + LN ++ K+ L I + K DI
Sbjct: 97 ELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIG 151
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 28.3 bits (64), Expect = 9.5
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
++ I+GAG +GL G++ +R G +V + ++ + + GL +
Sbjct: 4 RIAIVGAGALGLYYGALLQRSGEDVHF--------------LLRRDYEAIAGNGLKVF 47
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 28.4 bits (64), Expect = 9.8
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 570 PKKLCIIGAGVIGLE-IGSIWRRLGSEVT 597
P K+ +IGAGV GL IG+ LG+ V
Sbjct: 172 PAKVMVIGAGVAGLAAIGAA-NSLGAIVR 199
>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease,
nucle flipping, base extrusion, hydrolase-DNA complex;
HET: DNA; 1.70A {Enterobacter cloacae} PDB: 2fqz_A*
Length = 305
Score = 28.3 bits (62), Expect = 10.0
Identities = 9/62 (14%), Positives = 30/62 (48%)
Query: 589 WRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINY 648
W+ + EV + +L T+D+ +++ ++L + + ++ + + K N ++ +
Sbjct: 189 WQEVPEEVNRTGIREMYLATLDDSFSEETINILYEANVVVVTTVENKNFKYKNNNRVLTF 248
Query: 649 SN 650
+
Sbjct: 249 ED 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,059,613
Number of extensions: 842487
Number of successful extensions: 3153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2790
Number of HSP's successfully gapped: 370
Length of query: 866
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 764
Effective length of database: 3,853,851
Effective search space: 2944342164
Effective search space used: 2944342164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)