Query psy9584
Match_columns 466
No_of_seqs 82 out of 84
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:24:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2300|consensus 100.0 2E-116 4E-121 898.7 42.8 462 1-462 27-589 (629)
2 PF10345 Cohesin_load: Cohesin 100.0 2.3E-59 4.9E-64 512.3 43.7 430 1-434 39-608 (608)
3 PRK11447 cellulose synthase su 99.0 1.3E-06 2.7E-11 103.4 34.6 389 2-430 288-738 (1157)
4 TIGR02917 PEP_TPR_lipo putativ 98.9 4.3E-06 9.2E-11 92.6 35.5 81 334-427 714-794 (899)
5 KOG1130|consensus 98.9 5.1E-08 1.1E-12 100.7 17.6 290 67-436 22-348 (639)
6 KOG1840|consensus 98.9 1.5E-06 3.3E-11 93.7 28.9 269 57-434 194-481 (508)
7 TIGR02917 PEP_TPR_lipo putativ 98.8 5.3E-06 1.2E-10 91.8 32.0 339 22-427 535-895 (899)
8 TIGR00990 3a0801s09 mitochondr 98.8 3.8E-06 8.3E-11 92.7 29.7 279 22-398 293-577 (615)
9 TIGR00990 3a0801s09 mitochondr 98.8 2.6E-05 5.6E-10 86.1 35.2 344 19-432 126-496 (615)
10 PRK11788 tetratricopeptide rep 98.7 2.2E-05 4.9E-10 80.4 30.3 275 23-399 38-315 (389)
11 PRK04841 transcriptional regul 98.7 0.00011 2.5E-09 84.0 39.1 340 31-403 419-771 (903)
12 PRK10049 pgaA outer membrane p 98.7 3.5E-05 7.7E-10 87.5 33.8 342 20-426 49-450 (765)
13 KOG4626|consensus 98.7 7.1E-07 1.5E-11 96.1 18.3 251 30-427 227-480 (966)
14 PRK11788 tetratricopeptide rep 98.7 3.8E-05 8.1E-10 78.8 29.7 118 2-130 54-171 (389)
15 PF10345 Cohesin_load: Cohesin 98.7 0.00018 3.9E-09 79.8 36.8 336 57-427 54-428 (608)
16 PRK11447 cellulose synthase su 98.6 0.00015 3.3E-09 85.9 36.4 95 30-131 278-382 (1157)
17 KOG1840|consensus 98.5 3.4E-05 7.4E-10 83.4 25.0 225 106-434 205-440 (508)
18 PRK15174 Vi polysaccharide exp 98.5 7.8E-05 1.7E-09 83.4 28.6 138 283-441 246-390 (656)
19 KOG1130|consensus 98.5 8.9E-06 1.9E-10 84.5 18.4 282 63-421 56-373 (639)
20 KOG2300|consensus 98.4 0.0012 2.7E-08 70.0 33.2 352 60-424 44-506 (629)
21 KOG2002|consensus 98.4 2.8E-05 6E-10 87.6 20.8 349 2-395 361-748 (1018)
22 PRK10049 pgaA outer membrane p 98.2 0.0043 9.2E-08 70.7 34.9 351 20-428 18-418 (765)
23 TIGR00540 hemY_coli hemY prote 98.2 0.0034 7.5E-08 66.1 31.4 309 21-428 83-395 (409)
24 KOG2002|consensus 98.2 0.0016 3.5E-08 73.8 29.8 337 59-427 304-740 (1018)
25 KOG2076|consensus 98.2 0.0063 1.4E-07 68.7 33.6 363 15-421 134-544 (895)
26 PRK15174 Vi polysaccharide exp 98.2 0.0017 3.6E-08 72.8 28.8 292 24-428 45-343 (656)
27 PRK04841 transcriptional regul 98.2 0.012 2.5E-07 67.6 36.3 327 66-427 413-755 (903)
28 KOG4626|consensus 98.0 9.2E-05 2E-09 80.3 14.3 242 2-356 237-489 (966)
29 PRK14574 hmsH outer membrane p 98.0 0.0067 1.4E-07 69.7 29.5 135 282-428 326-475 (822)
30 TIGR02521 type_IV_pilW type IV 98.0 0.0037 8.1E-08 57.4 22.4 127 285-428 101-228 (234)
31 KOG4162|consensus 97.9 0.0093 2E-07 66.4 27.1 350 22-430 395-781 (799)
32 PF14938 SNAP: Soluble NSF att 97.8 0.00052 1.1E-08 68.8 15.6 198 2-211 54-260 (282)
33 PF14938 SNAP: Soluble NSF att 97.8 0.0046 9.9E-08 62.0 22.2 192 13-212 27-223 (282)
34 PF13424 TPR_12: Tetratricopep 97.8 0.00022 4.8E-09 56.8 9.9 74 361-434 3-77 (78)
35 cd05804 StaR_like StaR_like; a 97.8 0.0044 9.5E-08 62.8 21.6 295 26-404 48-348 (355)
36 cd05804 StaR_like StaR_like; a 97.7 0.02 4.3E-07 58.1 25.6 231 60-362 112-346 (355)
37 PF13424 TPR_12: Tetratricopep 97.7 0.00026 5.7E-09 56.3 9.2 69 327-395 9-78 (78)
38 PF12862 Apc5: Anaphase-promot 97.7 0.00048 1.1E-08 57.9 10.4 89 327-415 2-93 (94)
39 PRK10747 putative protoheme IX 97.7 0.1 2.2E-06 54.9 30.1 302 21-429 83-387 (398)
40 PRK09782 bacteriophage N4 rece 97.6 0.018 4E-07 67.4 26.5 101 284-399 610-713 (987)
41 PRK12370 invasion protein regu 97.6 0.019 4.2E-07 62.9 24.1 85 35-130 275-368 (553)
42 PF09976 TPR_21: Tetratricopep 97.5 0.0018 3.8E-08 58.2 12.0 112 5-126 33-144 (145)
43 KOG1941|consensus 97.4 0.046 1E-06 56.7 22.6 102 335-436 174-279 (518)
44 TIGR02521 type_IV_pilW type IV 97.4 0.0042 9.1E-08 57.0 13.8 148 262-431 41-197 (234)
45 TIGR00540 hemY_coli hemY prote 97.4 0.058 1.3E-06 56.8 24.1 282 23-401 121-408 (409)
46 PLN03081 pentatricopeptide (PP 97.4 0.086 1.9E-06 59.3 26.9 127 285-428 393-519 (697)
47 PF13429 TPR_15: Tetratricopep 97.4 0.0015 3.2E-08 64.7 11.4 256 65-427 11-272 (280)
48 PRK12370 invasion protein regu 97.3 0.041 8.8E-07 60.4 22.9 115 2-130 280-402 (553)
49 PF09976 TPR_21: Tetratricopep 97.3 0.0029 6.2E-08 56.9 11.5 92 327-428 52-143 (145)
50 KOG1173|consensus 97.3 0.049 1.1E-06 59.2 21.9 277 100-443 244-535 (611)
51 KOG2003|consensus 97.3 0.0075 1.6E-07 63.8 15.3 74 57-132 196-269 (840)
52 PRK10747 putative protoheme IX 97.2 0.11 2.4E-06 54.6 23.8 95 25-129 122-216 (398)
53 PRK09782 bacteriophage N4 rece 97.2 0.059 1.3E-06 63.3 23.5 269 15-395 472-743 (987)
54 PRK14574 hmsH outer membrane p 97.2 0.34 7.3E-06 56.0 29.2 121 298-427 307-440 (822)
55 TIGR03302 OM_YfiO outer membra 97.2 0.029 6.4E-07 53.7 17.8 186 15-212 28-230 (235)
56 cd00189 TPR Tetratricopeptide 97.2 0.0029 6.3E-08 48.4 8.8 88 329-428 6-93 (100)
57 KOG1941|consensus 97.1 0.39 8.4E-06 50.1 25.2 263 59-424 80-352 (518)
58 cd00189 TPR Tetratricopeptide 97.1 0.0041 9E-08 47.5 8.6 95 22-128 2-96 (100)
59 KOG1126|consensus 97.0 0.08 1.7E-06 58.3 20.7 277 58-423 313-611 (638)
60 PLN03218 maturation of RBCL 1; 97.0 1.3 2.8E-05 52.7 31.8 128 285-427 651-778 (1060)
61 PRK10370 formate-dependent nit 97.0 0.019 4E-07 54.9 13.7 116 2-132 58-176 (198)
62 PLN03218 maturation of RBCL 1; 96.9 1.4 3.1E-05 52.3 33.6 300 63-427 438-743 (1060)
63 PF13429 TPR_15: Tetratricopep 96.9 0.0049 1.1E-07 61.0 9.7 93 327-431 150-242 (280)
64 KOG0547|consensus 96.9 0.85 1.8E-05 49.3 27.0 338 31-435 125-494 (606)
65 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.011 2.3E-07 49.6 10.1 107 19-131 1-107 (119)
66 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.019 4E-07 48.1 11.5 97 326-428 5-101 (119)
67 TIGR02552 LcrH_SycD type III s 96.7 0.025 5.5E-07 49.1 11.4 99 21-131 18-116 (135)
68 PRK11189 lipoprotein NlpI; Pro 96.6 0.026 5.7E-07 56.9 12.6 118 2-131 45-163 (296)
69 PLN03077 Protein ECB2; Provisi 96.6 0.9 2E-05 52.4 26.6 123 286-426 557-680 (857)
70 TIGR03302 OM_YfiO outer membra 96.6 0.052 1.1E-06 51.9 13.8 145 2-152 52-217 (235)
71 PF13414 TPR_11: TPR repeat; P 96.5 0.014 3E-07 45.1 7.6 63 324-392 4-67 (69)
72 PF12895 Apc3: Anaphase-promot 96.4 0.022 4.8E-07 46.1 8.3 83 34-126 2-84 (84)
73 KOG4162|consensus 96.3 1.8 3.9E-05 48.9 25.0 296 63-398 479-789 (799)
74 PRK02603 photosystem I assembl 96.3 0.069 1.5E-06 49.2 12.3 108 15-131 30-144 (172)
75 CHL00033 ycf3 photosystem I as 96.3 0.097 2.1E-06 47.9 13.2 108 322-432 34-142 (168)
76 COG3071 HemY Uncharacterized e 96.3 1.6 3.4E-05 45.9 23.1 90 331-427 271-385 (400)
77 PLN03077 Protein ECB2; Provisi 96.3 1.7 3.7E-05 50.2 26.0 59 284-351 425-483 (857)
78 PRK11189 lipoprotein NlpI; Pro 96.2 0.14 3.1E-06 51.6 14.8 59 329-393 104-162 (296)
79 TIGR02552 LcrH_SycD type III s 96.2 0.058 1.3E-06 46.8 10.4 93 327-431 21-113 (135)
80 PF12895 Apc3: Anaphase-promot 96.1 0.038 8.2E-07 44.7 8.2 81 336-427 2-82 (84)
81 COG2956 Predicted N-acetylgluc 96.0 2.2 4.9E-05 44.0 23.9 109 81-213 25-135 (389)
82 PLN03088 SGT1, suppressor of 96.0 0.064 1.4E-06 55.8 11.7 93 27-131 9-101 (356)
83 CHL00033 ycf3 photosystem I as 95.9 0.17 3.7E-06 46.3 12.5 113 15-132 30-145 (168)
84 PLN03081 pentatricopeptide (PP 95.8 0.94 2E-05 51.0 20.6 313 34-428 100-416 (697)
85 PF13414 TPR_11: TPR repeat; P 95.8 0.042 9.2E-07 42.3 7.0 63 63-129 4-67 (69)
86 PRK10803 tol-pal system protei 95.7 0.084 1.8E-06 52.8 10.6 104 19-129 141-246 (263)
87 PRK02603 photosystem I assembl 95.7 0.19 4.1E-06 46.3 12.2 90 321-419 33-122 (172)
88 PRK15359 type III secretion sy 95.5 0.24 5.3E-06 44.6 12.0 95 25-131 29-123 (144)
89 PLN03088 SGT1, suppressor of 95.5 0.1 2.2E-06 54.3 10.5 91 327-429 6-96 (356)
90 PRK15359 type III secretion sy 95.2 0.16 3.5E-06 45.7 9.6 91 329-431 30-120 (144)
91 KOG0547|consensus 95.1 6.2 0.00013 42.9 25.0 273 32-405 290-578 (606)
92 PF13432 TPR_16: Tetratricopep 95.1 0.076 1.6E-06 40.5 6.2 58 330-393 4-61 (65)
93 KOG1126|consensus 95.0 0.59 1.3E-05 51.8 14.9 105 278-398 519-626 (638)
94 KOG0624|consensus 94.8 6.1 0.00013 41.4 23.7 334 18-438 36-383 (504)
95 PF13432 TPR_16: Tetratricopep 94.7 0.084 1.8E-06 40.2 5.5 59 67-129 2-60 (65)
96 COG3063 PilF Tfp pilus assembl 94.4 0.44 9.6E-06 46.9 10.9 145 262-429 45-199 (250)
97 KOG2003|consensus 94.0 9.7 0.00021 41.1 20.5 98 25-130 242-339 (840)
98 COG3063 PilF Tfp pilus assembl 94.0 0.69 1.5E-05 45.6 11.4 99 16-126 31-129 (250)
99 PRK10803 tol-pal system protei 93.8 0.58 1.3E-05 46.8 10.8 97 326-428 145-242 (263)
100 PF09295 ChAPs: ChAPs (Chs5p-A 93.6 0.74 1.6E-05 48.8 11.8 91 25-127 205-295 (395)
101 KOG1585|consensus 93.6 8.9 0.00019 38.4 19.6 111 59-193 28-140 (308)
102 PF12688 TPR_5: Tetratrico pep 93.4 1.1 2.4E-05 39.6 10.8 94 327-426 5-98 (120)
103 PF13371 TPR_9: Tetratricopept 93.3 0.26 5.6E-06 38.2 6.0 60 68-131 1-60 (73)
104 KOG0543|consensus 93.2 1.1 2.3E-05 47.3 12.0 113 16-132 203-323 (397)
105 PRK10370 formate-dependent nit 93.2 1.5 3.2E-05 41.8 12.2 101 285-400 75-181 (198)
106 PRK15363 pathogenicity island 93.0 1 2.3E-05 41.8 10.3 88 55-150 27-115 (157)
107 PF09295 ChAPs: ChAPs (Chs5p-A 92.9 0.88 1.9E-05 48.3 11.0 79 334-424 211-289 (395)
108 PRK15363 pathogenicity island 92.9 1.4 2.9E-05 41.0 10.8 96 24-131 39-134 (157)
109 PF14559 TPR_19: Tetratricopep 92.8 0.23 5.1E-06 37.9 5.0 60 33-99 3-62 (68)
110 KOG3785|consensus 92.7 15 0.00033 38.6 22.9 57 368-429 398-454 (557)
111 KOG0548|consensus 92.5 19 0.00042 39.4 20.8 90 328-431 363-454 (539)
112 COG2909 MalT ATP-dependent tra 92.1 3.8 8.3E-05 47.1 15.1 125 296-422 428-556 (894)
113 KOG0553|consensus 92.0 1.2 2.6E-05 45.4 10.0 105 69-186 88-192 (304)
114 KOG4555|consensus 91.9 3.6 7.7E-05 37.6 11.8 111 15-136 37-147 (175)
115 PF12862 Apc5: Anaphase-promot 91.7 1.4 2.9E-05 36.9 8.7 68 74-142 10-83 (94)
116 KOG2581|consensus 91.4 11 0.00024 40.2 16.5 177 15-214 164-346 (493)
117 PF04733 Coatomer_E: Coatomer 91.4 4.4 9.6E-05 41.1 13.7 255 32-399 12-269 (290)
118 PF14559 TPR_19: Tetratricopep 91.4 0.32 7E-06 37.1 4.3 56 334-395 2-57 (68)
119 PF13176 TPR_7: Tetratricopept 91.3 0.39 8.5E-06 32.9 4.1 34 103-136 2-35 (36)
120 PRK15331 chaperone protein Sic 91.3 2.5 5.5E-05 39.5 10.7 95 52-154 27-121 (165)
121 PF08631 SPO22: Meiosis protei 91.0 18 0.00039 36.1 22.4 130 74-211 5-147 (278)
122 PRK15179 Vi polysaccharide bio 90.9 3.2 6.8E-05 47.3 13.2 114 20-151 86-199 (694)
123 PRK10866 outer membrane biogen 90.7 18 0.0004 35.6 19.9 184 16-212 28-239 (243)
124 KOG1586|consensus 90.6 20 0.00043 35.8 16.9 175 21-211 75-259 (288)
125 PF10602 RPN7: 26S proteasome 90.2 8.2 0.00018 36.2 13.4 111 55-166 29-139 (177)
126 PF13181 TPR_8: Tetratricopept 90.2 0.57 1.2E-05 30.9 4.1 32 100-131 1-32 (34)
127 PF13374 TPR_10: Tetratricopep 90.2 0.63 1.4E-05 31.7 4.4 35 362-396 1-35 (42)
128 PF13176 TPR_7: Tetratricopept 89.9 0.72 1.6E-05 31.5 4.5 35 365-399 1-35 (36)
129 PF11207 DUF2989: Protein of u 89.6 1 2.2E-05 43.5 6.8 84 29-119 113-197 (203)
130 PRK10866 outer membrane biogen 89.6 7.1 0.00015 38.5 13.0 76 323-401 32-107 (243)
131 KOG1586|consensus 89.5 24 0.00053 35.2 18.0 137 69-212 81-222 (288)
132 KOG1173|consensus 89.4 4 8.7E-05 44.9 11.7 107 33-151 392-502 (611)
133 PF12688 TPR_5: Tetratrico pep 89.4 4.3 9.4E-05 35.8 10.1 96 22-123 3-98 (120)
134 COG2956 Predicted N-acetylgluc 89.2 15 0.00033 38.2 15.1 68 64-131 143-211 (389)
135 PF12569 NARP1: NMDA receptor- 89.2 40 0.00086 37.2 27.9 310 29-397 12-339 (517)
136 KOG1129|consensus 88.8 10 0.00022 39.6 13.5 64 323-392 395-458 (478)
137 PF13371 TPR_9: Tetratricopept 88.6 1.6 3.4E-05 33.7 6.2 58 334-397 6-63 (73)
138 PF09986 DUF2225: Uncharacteri 88.2 2.2 4.7E-05 41.5 8.1 81 13-94 111-197 (214)
139 PRK10153 DNA-binding transcrip 87.7 9.4 0.0002 42.0 13.6 63 363-432 420-482 (517)
140 PF13525 YfiO: Outer membrane 87.7 16 0.00034 34.7 13.7 119 60-180 3-127 (203)
141 PF13181 TPR_8: Tetratricopept 87.4 1.4 2.9E-05 29.0 4.4 31 364-394 2-32 (34)
142 COG5010 TadD Flp pilus assembl 86.9 2.5 5.5E-05 42.1 7.7 93 26-130 106-198 (257)
143 PRK10153 DNA-binding transcrip 86.5 2 4.3E-05 47.2 7.5 73 324-406 421-493 (517)
144 COG4783 Putative Zn-dependent 86.3 7.2 0.00016 42.2 11.3 89 334-434 351-439 (484)
145 KOG1125|consensus 86.1 1.1 2.3E-05 49.2 5.1 80 2-92 449-528 (579)
146 PF07719 TPR_2: Tetratricopept 85.8 1.4 3.1E-05 28.7 3.8 30 101-130 2-31 (34)
147 PF10579 Rapsyn_N: Rapsyn N-te 85.3 3.2 6.9E-05 34.3 6.3 67 329-399 12-79 (80)
148 COG2976 Uncharacterized protei 84.7 9 0.00019 37.0 10.0 104 17-130 86-189 (207)
149 PF07719 TPR_2: Tetratricopept 84.6 2 4.3E-05 28.0 4.1 25 329-353 7-31 (34)
150 PF09986 DUF2225: Uncharacteri 84.6 7.6 0.00017 37.7 9.8 130 2-131 51-196 (214)
151 PF10300 DUF3808: Protein of u 83.7 25 0.00055 38.0 14.4 169 32-220 199-382 (468)
152 PLN03098 LPA1 LOW PSII ACCUMUL 83.2 3.8 8.3E-05 44.1 7.6 69 60-129 73-141 (453)
153 PF12569 NARP1: NMDA receptor- 83.1 80 0.0017 34.9 26.1 111 325-441 196-343 (517)
154 KOG0550|consensus 82.8 10 0.00022 40.5 10.4 119 27-152 209-335 (486)
155 PF04733 Coatomer_E: Coatomer 82.7 9.5 0.00021 38.7 10.0 155 243-426 32-190 (290)
156 PRK14720 transcript cleavage f 82.6 28 0.0006 41.0 14.7 64 63-131 117-180 (906)
157 PF00515 TPR_1: Tetratricopept 82.4 3 6.4E-05 27.4 4.3 30 364-393 2-31 (34)
158 KOG0550|consensus 82.4 62 0.0014 34.8 15.8 99 329-435 255-353 (486)
159 KOG3785|consensus 82.3 72 0.0016 33.8 16.9 90 285-381 395-486 (557)
160 PF08631 SPO22: Meiosis protei 81.9 43 0.00094 33.4 14.4 112 34-147 6-130 (278)
161 PRK15179 Vi polysaccharide bio 81.2 33 0.00072 39.2 14.6 52 334-391 131-182 (694)
162 PF10579 Rapsyn_N: Rapsyn N-te 80.6 11 0.00023 31.2 7.6 76 38-136 4-79 (80)
163 COG4235 Cytochrome c biogenesi 80.6 15 0.00032 37.5 10.3 99 21-131 157-258 (287)
164 PF00515 TPR_1: Tetratricopept 80.6 3.5 7.5E-05 27.1 4.1 30 325-354 3-32 (34)
165 PRK15331 chaperone protein Sic 79.8 14 0.0003 34.6 9.2 93 327-431 41-133 (165)
166 COG1729 Uncharacterized protei 79.5 12 0.00027 37.5 9.3 94 326-425 144-237 (262)
167 KOG1174|consensus 77.4 1.1E+02 0.0024 33.1 19.0 251 25-355 237-503 (564)
168 KOG1585|consensus 76.7 75 0.0016 32.1 13.5 151 19-170 49-220 (308)
169 KOG2376|consensus 76.7 1.4E+02 0.0029 33.6 23.1 85 105-193 115-205 (652)
170 KOG3060|consensus 76.6 38 0.00082 34.2 11.5 132 2-147 71-234 (289)
171 KOG0553|consensus 76.0 8.1 0.00018 39.4 6.9 97 2-115 100-200 (304)
172 KOG2076|consensus 75.9 12 0.00025 43.3 8.7 82 329-422 145-226 (895)
173 KOG0624|consensus 74.6 71 0.0015 33.8 13.3 168 21-224 107-286 (504)
174 PF13374 TPR_10: Tetratricopep 74.2 6.5 0.00014 26.5 4.2 33 101-133 3-35 (42)
175 PF13525 YfiO: Outer membrane 74.1 80 0.0017 29.8 14.3 73 324-399 6-78 (203)
176 PF13174 TPR_6: Tetratricopept 73.3 4.4 9.5E-05 26.0 3.0 28 64-91 2-29 (33)
177 KOG1497|consensus 73.0 1.3E+02 0.0027 31.6 16.0 88 94-188 97-187 (399)
178 PLN03098 LPA1 LOW PSII ACCUMUL 73.0 44 0.00096 36.2 11.8 68 20-92 75-142 (453)
179 COG2909 MalT ATP-dependent tra 72.9 2E+02 0.0043 33.8 29.1 145 7-152 400-549 (894)
180 PF10602 RPN7: 26S proteasome 72.9 42 0.0009 31.5 10.6 116 5-125 18-138 (177)
181 PF13428 TPR_14: Tetratricopep 72.8 7.1 0.00015 27.6 4.2 33 63-95 2-34 (44)
182 COG1729 Uncharacterized protei 71.8 17 0.00036 36.6 7.9 85 37-128 157-243 (262)
183 PF02526 GBP_repeat: Glycophor 71.7 3.9 8.4E-05 28.2 2.3 25 167-191 7-31 (38)
184 KOG1128|consensus 70.8 1.3E+02 0.0029 34.4 15.2 96 327-434 523-618 (777)
185 COG2976 Uncharacterized protei 68.7 15 0.00032 35.6 6.5 88 272-366 115-202 (207)
186 PRK14720 transcript cleavage f 68.7 1.3E+02 0.0028 35.6 15.1 107 12-130 25-146 (906)
187 PRK11906 transcriptional regul 68.5 41 0.00089 36.5 10.4 87 37-131 274-369 (458)
188 KOG1538|consensus 67.7 96 0.0021 35.3 13.1 80 66-145 636-715 (1081)
189 PF10300 DUF3808: Protein of u 67.7 1.9E+02 0.0041 31.4 24.9 312 73-419 7-356 (468)
190 KOG1463|consensus 67.6 14 0.00031 38.5 6.5 91 334-424 139-230 (411)
191 PF11817 Foie-gras_1: Foie gra 66.9 46 0.00099 32.7 9.9 57 36-93 153-209 (247)
192 PRK11906 transcriptional regul 66.9 57 0.0012 35.4 11.1 117 2-129 277-401 (458)
193 KOG2376|consensus 66.7 2.3E+02 0.0049 32.0 30.2 70 63-132 111-207 (652)
194 PF11817 Foie-gras_1: Foie gra 66.1 78 0.0017 31.1 11.3 84 341-424 156-239 (247)
195 COG3071 HemY Uncharacterized e 66.1 1.9E+02 0.0041 30.9 25.0 115 262-395 273-393 (400)
196 KOG1155|consensus 66.0 72 0.0016 34.8 11.5 90 23-121 435-528 (559)
197 KOG1125|consensus 65.4 15 0.00034 40.5 6.6 97 25-132 433-530 (579)
198 KOG1129|consensus 65.3 46 0.00099 34.9 9.5 112 300-424 161-277 (478)
199 PF08626 TRAPPC9-Trs120: Trans 65.2 2.2E+02 0.0047 34.8 16.8 135 14-149 379-552 (1185)
200 KOG4642|consensus 64.7 23 0.00049 35.5 7.0 89 37-136 26-114 (284)
201 COG4783 Putative Zn-dependent 64.1 60 0.0013 35.4 10.6 90 323-424 306-395 (484)
202 PLN02789 farnesyltranstransfer 63.7 1.2E+02 0.0025 31.3 12.4 107 26-144 77-186 (320)
203 PF13428 TPR_14: Tetratricopep 62.0 14 0.0003 26.0 3.9 33 365-397 3-35 (44)
204 KOG1174|consensus 61.4 31 0.00066 37.2 7.6 92 28-131 411-502 (564)
205 PF13431 TPR_17: Tetratricopep 61.0 9.2 0.0002 25.9 2.6 32 85-120 2-33 (34)
206 PF13174 TPR_6: Tetratricopept 59.3 12 0.00026 23.9 2.9 27 102-128 2-28 (33)
207 KOG0548|consensus 59.2 1.5E+02 0.0032 32.8 12.5 103 15-130 354-456 (539)
208 KOG2908|consensus 59.0 1.9E+02 0.0042 30.4 12.8 96 338-433 90-187 (380)
209 KOG1464|consensus 57.5 49 0.0011 33.8 8.0 133 275-413 56-194 (440)
210 smart00028 TPR Tetratricopepti 57.2 13 0.00029 21.8 2.8 28 102-129 3-30 (34)
211 PF11207 DUF2989: Protein of u 56.9 37 0.0008 32.9 6.9 47 334-382 151-197 (203)
212 COG5159 RPN6 26S proteasome re 56.2 49 0.0011 34.1 7.8 92 334-425 136-228 (421)
213 COG4700 Uncharacterized protei 55.9 71 0.0015 31.1 8.4 100 21-131 90-191 (251)
214 KOG0543|consensus 55.9 28 0.00061 36.9 6.4 67 280-356 254-324 (397)
215 PF13512 TPR_18: Tetratricopep 55.4 71 0.0015 29.2 8.2 69 32-104 21-89 (142)
216 PF15469 Sec5: Exocyst complex 54.1 91 0.002 29.0 9.0 38 96-133 79-119 (182)
217 PF03704 BTAD: Bacterial trans 53.5 1.5E+02 0.0033 25.8 13.9 100 33-136 18-133 (146)
218 KOG1155|consensus 51.8 3.7E+02 0.0079 29.6 22.8 62 366-433 435-496 (559)
219 KOG4507|consensus 50.8 49 0.0011 37.1 7.3 84 2-95 626-709 (886)
220 KOG3081|consensus 50.6 1.9E+02 0.004 29.6 10.8 127 22-167 109-269 (299)
221 PF07721 TPR_4: Tetratricopept 50.5 14 0.00031 23.2 2.1 19 105-123 6-24 (26)
222 KOG4234|consensus 50.1 1.1E+02 0.0025 30.0 8.9 97 26-129 101-197 (271)
223 COG4235 Cytochrome c biogenesi 48.8 1.2E+02 0.0027 30.9 9.5 86 334-431 167-255 (287)
224 PF07721 TPR_4: Tetratricopept 47.5 26 0.00056 22.0 2.9 24 63-86 2-25 (26)
225 KOG4322|consensus 45.6 4.4E+02 0.0094 28.7 13.2 174 15-195 270-451 (482)
226 KOG1156|consensus 42.9 5.6E+02 0.012 29.3 22.3 80 63-151 42-122 (700)
227 PF10516 SHNi-TPR: SHNi-TPR; 41.7 41 0.00088 23.7 3.4 34 364-397 2-35 (38)
228 KOG3060|consensus 40.6 3.2E+02 0.0068 27.8 10.6 115 276-415 151-271 (289)
229 TIGR03504 FimV_Cterm FimV C-te 39.0 38 0.00081 24.7 3.0 25 104-128 3-27 (44)
230 COG0790 FOG: TPR repeat, SEL1 38.3 3.9E+02 0.0085 26.1 11.3 138 284-434 74-222 (292)
231 PF10516 SHNi-TPR: SHNi-TPR; 37.6 56 0.0012 23.0 3.6 33 20-53 1-33 (38)
232 COG0457 NrfG FOG: TPR repeat [ 37.4 2.5E+02 0.0055 23.7 11.4 96 30-132 139-234 (291)
233 KOG4555|consensus 35.3 1.6E+02 0.0035 27.1 7.0 64 334-399 88-151 (175)
234 KOG4642|consensus 35.3 1.6E+02 0.0034 29.7 7.5 77 2-93 29-109 (284)
235 PF06552 TOM20_plant: Plant sp 35.0 1.2E+02 0.0027 29.0 6.5 30 77-106 108-137 (186)
236 PF00244 14-3-3: 14-3-3 protei 34.8 1.3E+02 0.0027 29.6 7.0 60 339-398 142-204 (236)
237 TIGR01716 RGG_Cterm transcript 34.1 1E+02 0.0022 29.0 6.1 82 279-363 124-208 (220)
238 KOG4340|consensus 33.3 2.9E+02 0.0064 28.8 9.3 53 83-135 397-449 (459)
239 COG4499 Predicted membrane pro 33.1 2.4E+02 0.0053 30.1 8.8 93 302-417 267-360 (434)
240 TIGR03504 FimV_Cterm FimV C-te 32.8 45 0.00098 24.3 2.6 25 66-90 3-27 (44)
241 KOG2581|consensus 32.0 4.5E+02 0.0096 28.5 10.6 121 318-448 242-375 (493)
242 KOG1915|consensus 31.7 2.8E+02 0.0061 30.7 9.2 100 36-140 486-596 (677)
243 KOG2796|consensus 31.0 6E+02 0.013 26.2 10.9 104 66-172 181-284 (366)
244 KOG3617|consensus 30.8 4E+02 0.0087 31.6 10.6 85 348-436 956-1055(1416)
245 KOG1127|consensus 30.4 5.8E+02 0.013 30.8 12.0 94 28-132 569-662 (1238)
246 COG0457 NrfG FOG: TPR repeat [ 29.3 3.5E+02 0.0075 22.8 11.6 120 2-132 149-268 (291)
247 PF05843 Suf: Suppressor of fo 28.8 1.8E+02 0.0039 29.1 7.1 87 31-129 11-99 (280)
248 KOG0687|consensus 28.7 5.1E+02 0.011 27.3 10.1 144 37-188 37-188 (393)
249 PF07219 HemY_N: HemY protein 28.6 95 0.0021 26.5 4.4 43 321-363 57-99 (108)
250 PF05843 Suf: Suppressor of fo 27.0 5.5E+02 0.012 25.6 10.2 99 21-131 36-138 (280)
251 PF02259 FAT: FAT domain; Int 26.7 6.4E+02 0.014 25.0 11.5 70 59-128 143-212 (352)
252 KOG1550|consensus 26.4 4.8E+02 0.01 28.9 10.5 96 21-128 245-356 (552)
253 KOG4340|consensus 26.3 2.3E+02 0.0049 29.6 7.1 59 62-124 44-102 (459)
254 PTZ00131 glycophorin-binding p 25.8 1E+02 0.0022 31.0 4.4 26 167-192 166-191 (413)
255 PF14561 TPR_20: Tetratricopep 25.2 1.5E+02 0.0033 24.6 4.9 48 82-133 8-55 (90)
256 PF08626 TRAPPC9-Trs120: Trans 24.9 1E+02 0.0022 37.5 5.2 51 360-413 239-289 (1185)
257 PF03704 BTAD: Bacterial trans 24.7 4.6E+02 0.01 22.7 11.2 70 62-131 6-93 (146)
258 KOG3081|consensus 24.5 7.8E+02 0.017 25.3 12.9 101 106-211 114-233 (299)
259 KOG2796|consensus 24.5 6E+02 0.013 26.2 9.6 114 55-182 205-324 (366)
260 PF14853 Fis1_TPR_C: Fis1 C-te 24.1 1.3E+02 0.0028 22.7 3.8 30 327-356 5-34 (53)
261 PRK12798 chemotaxis protein; R 23.8 6.9E+02 0.015 27.0 10.4 28 366-393 260-287 (421)
262 COG3118 Thioredoxin domain-con 23.6 4.6E+02 0.01 27.0 8.8 93 32-131 145-267 (304)
263 COG4105 ComL DNA uptake lipopr 23.6 7.6E+02 0.017 24.8 10.6 78 323-403 34-111 (254)
264 PF04190 DUF410: Protein of un 23.4 7.3E+02 0.016 24.6 17.3 140 66-214 53-216 (260)
265 PF04212 MIT: MIT (microtubule 22.5 1.8E+02 0.0038 22.5 4.5 28 324-351 5-33 (69)
266 PHA02537 M terminase endonucle 22.3 1.9E+02 0.0041 28.6 5.6 49 5-53 153-210 (230)
267 PF09205 DUF1955: Domain of un 22.1 5.4E+02 0.012 23.8 8.0 103 278-391 35-148 (161)
268 smart00101 14_3_3 14-3-3 homol 22.0 3E+02 0.0065 27.4 7.1 56 339-394 144-202 (244)
269 PF03745 DUF309: Domain of unk 21.6 3.5E+02 0.0076 20.9 6.0 59 327-385 3-61 (62)
270 PF10373 EST1_DNA_bind: Est1 D 21.6 4.7E+02 0.01 25.1 8.4 73 302-376 4-106 (278)
271 PF10255 Paf67: RNA polymerase 21.5 9.3E+02 0.02 25.9 11.0 94 57-151 117-229 (404)
272 PF14689 SPOB_a: Sensor_kinase 21.0 1.4E+02 0.0031 23.0 3.6 35 320-356 22-56 (62)
273 COG3118 Thioredoxin domain-con 20.7 7.5E+02 0.016 25.6 9.6 94 327-426 138-259 (304)
274 KOG1156|consensus 20.4 3.6E+02 0.0078 30.7 7.8 97 324-432 8-104 (700)
275 KOG4507|consensus 20.1 1.4E+02 0.003 33.7 4.5 87 334-424 224-311 (886)
276 PF14853 Fis1_TPR_C: Fis1 C-te 20.0 1.9E+02 0.0041 21.8 4.0 28 365-392 3-30 (53)
No 1
>KOG2300|consensus
Probab=100.00 E-value=1.8e-116 Score=898.71 Aligned_cols=462 Identities=50% Similarity=0.725 Sum_probs=447.3
Q ss_pred CcchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhC-Ccc
Q psy9584 1 MCIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQL-LSN 79 (466)
Q Consensus 1 ~ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~-~~~ 79 (466)
+||+||+|+|++.+|.++|||||||+|.+|+.||+|+++||+||||||+++++++.|.|+||+++|+||++|++.+ +.+
T Consensus 27 k~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~ 106 (629)
T KOG2300|consen 27 KCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFP 106 (629)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred chhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHH
Q psy9584 80 LSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDA 159 (466)
Q Consensus 80 ~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v 159 (466)
++|+++||+|++++++|+|+|+|+||||++|..++||.+|++.|+.|+++|...+.+|++++|.+|++|++++++|..+|
T Consensus 107 ~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV 186 (629)
T KOG2300|consen 107 PAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDV 186 (629)
T ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccc
Q psy9584 160 VQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFI 239 (466)
Q Consensus 160 ~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~ 239 (466)
+++++.||+++++++++|.++|+|++||+|+++|+|+..|+||++||++||||++++++++++|++|+.+.|+++.+.|+
T Consensus 187 ~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~ 266 (629)
T KOG2300|consen 187 EKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFE 266 (629)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhHHHHHHHHHHhh-----------------------------------hhhH-----------------------
Q psy9584 240 WMPKEHLYVVVYLVTVIG-----------------------------------HLKF----------------------- 261 (466)
Q Consensus 240 WLpk~~l~aLvyl~tv~~-----------------------------------~lk~----------------------- 261 (466)
|||||++|||||++||+| ++||
T Consensus 267 wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i 346 (629)
T KOG2300|consen 267 WLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEI 346 (629)
T ss_pred hccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998 1122
Q ss_pred -----------------------HHhcCchhh-------------HHhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHH
Q psy9584 262 -----------------------FGVTGTAGT-------------EVERLSQERELWTFANLNLAIVYLRGKREGDFAAL 305 (466)
Q Consensus 262 -----------------------Flv~G~~~~-------------eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~ 305 (466)
.+++|+|++ +|++.+.+.|+|+||++|+|++|+|.+++.++|++
T Consensus 347 ~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ 426 (629)
T KOG2300|consen 347 VDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKA 426 (629)
T ss_pred HHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHH
Confidence 057777766 39999999999999999999999999888899999
Q ss_pred HhhhCCC-ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHH
Q psy9584 306 LERINPE-TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMN 384 (466)
Q Consensus 306 l~~i~~~-~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~ 384 (466)
+++|+|+ +++.++++++|+++||+|+++|+||+++|||+++||+|||||+||++||++|+||+||++|+++||..||+|
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHH---hhhcccccccccccccCCC
Q psy9584 385 MVTPAMQLASKIPDVHVQLWASAILKDLYKILND--PVRENEALQMHCNFSQMLLKDH---FQSSERAEHNLINCIDGTF 459 (466)
Q Consensus 385 ~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~--~~~~~e~~~~~~~~s~~l~~~~---~~~~~~~~~~l~~~~~~~~ 459 (466)
||+|||||||||||++||+|+++||+|+|+++|+ .+.|.|++++|..+|+.+++|+ ..+.++|+|+|++|+||||
T Consensus 507 mvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ql~Sr~lla~~~i~~~~~~~pa~~ll~wfdgdP 586 (629)
T KOG2300|consen 507 MVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKHQLQSRLLLADGSIHHIELVAPAHILLYWFDGDP 586 (629)
T ss_pred ccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHhccCcchHhhcccHHhhhhhccCCC
Confidence 9999999999999999999999999999999998 8889999999999999999999 9999999999999999999
Q ss_pred CCC
Q psy9584 460 TIP 462 (466)
Q Consensus 460 ~~~ 462 (466)
|+.
T Consensus 587 pv~ 589 (629)
T KOG2300|consen 587 PVA 589 (629)
T ss_pred ccc
Confidence 864
No 2
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=100.00 E-value=2.3e-59 Score=512.25 Aligned_cols=430 Identities=35% Similarity=0.443 Sum_probs=368.7
Q ss_pred CcchhHHHhh-cCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCcc
Q psy9584 1 MCIQCLQAVF-NFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSN 79 (466)
Q Consensus 1 ~ai~CLeAvl-~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~ 79 (466)
+||+||++++ ++++||++||++|+|||+||++||+|+|+||+||+||+.+|++ ++|+|+||+++++|+++|++.|+.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3799999999 7889999999999999999999999999999999999999999 8899999999999999999999988
Q ss_pred chhHHHHHHHHhhch--hhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCcc
Q psy9584 80 LSKPILRRAIELSQH--SIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVN 157 (466)
Q Consensus 80 ~ak~~l~k~i~~s~~--~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~ 157 (466)
+++.+++.|+.+++ ...|.+.|+|..+..+...+|+.+|+++|++|+++|.+.||++++++|+++++++++....++
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999999999985 456666666655665544499999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHhhHhh--hhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCC---CCccCC
Q psy9584 158 DAVQLLTQAGYQVE--NWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPT-WPS---DEVVSG 231 (466)
Q Consensus 158 ~v~~al~~~~~l~~--~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~-w~~---~~~~~~ 231 (466)
++.+.++++..... .|.+.+ ..++|+++++++++|+++..|++++++++|++||+..++.+... |+. |+.++-
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77888888866665 557777 89999999999999999999999999999999999988776654 665 444321
Q ss_pred C------CC---CcccccCcchhHHHHHHHHHHhh----------------------hhh-------------H------
Q psy9584 232 P------NV---GDMFIWMPKEHLYVVVYLVTVIG----------------------HLK-------------F------ 261 (466)
Q Consensus 232 ~------~~---~~~f~WLpk~~l~aLvyl~tv~~----------------------~lk-------------~------ 261 (466)
. ++ ...|.|||++++++|||++|+++ +++ .
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 1 11 46999999999999999999998 122 0
Q ss_pred ---------H------HhcCch------------------------------------hh------HHhhh---------
Q psy9584 262 ---------F------GVTGTA------------------------------------GT------EVERL--------- 275 (466)
Q Consensus 262 ---------F------lv~G~~------------------------------------~~------eAl~~--------- 275 (466)
| .++|++ +| .|+..
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 0 233333 22 14433
Q ss_pred ------hcchhhHHHHHHHHHHHHHhCCCch--H--HHHHHhhhCCCccccccchhh-HHHHHHHhHHHhhhhcHHHHHH
Q psy9584 276 ------SQERELWTFANLNLAIVYLRGKREG--D--FAALLERINPETLTSHSHSLR-AAAYYVQGLQSFFQARYNEAKR 344 (466)
Q Consensus 276 ------~~~~~~~~~~~lNlai~Yl~~~~~~--e--~~~~l~~i~~~~~~~~~~~L~-a~~~yv~~~~~~~~~~~~eAk~ 344 (466)
..+++++.++++|++++|.+.+++. + +.+++++++|.+-.+.+..++ +...++.+++.+.+-+++++|+
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~ 515 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR 515 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHH
Confidence 3357999999999999999977433 4 999999999985544444444 4455578899999999999999
Q ss_pred HHHHHHHhh-hhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHH---HHHHHHHHHHHcCCch
Q psy9584 345 YLRETLKMA-NAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLW---ASAILKDLYKILNDPV 420 (466)
Q Consensus 345 ~lre~lk~a-~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw---~~~lL~~ly~~~g~~~ 420 (466)
+++++|+++ ++++++++++++|++||+.++ .|+.+|..++..+++++|+|++|.+.++| +..++++.|+..|+.+
T Consensus 516 ~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ 594 (608)
T PF10345_consen 516 HLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRD 594 (608)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHH
Confidence 999999999 999999999999999999999 88889999999999999999999999999 8899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy9584 421 RENEALQMHCNFSQ 434 (466)
Q Consensus 421 ~~~e~~~~~~~~s~ 434 (466)
+|.+..+.+..+++
T Consensus 595 ka~~~~~~~~~~~~ 608 (608)
T PF10345_consen 595 KAEEARQQLDRVSK 608 (608)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988764
No 3
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.97 E-value=1.3e-06 Score=103.36 Aligned_cols=389 Identities=14% Similarity=0.085 Sum_probs=223.4
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHH
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAF-------DDVKFEAASVLAELYET 74 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~-------~d~K~~a~slLa~~y~~ 74 (466)
|+.+++.+++..|.. +.++..+|.+++ ...+.++|+.++++++.+....... ....+.....+++++..
T Consensus 288 A~~~l~~aL~~~P~~---~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 288 AIPELQQAVRANPKD---SEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHhCCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 677888888765532 356778887654 5689999999999998764432111 11245555667899999
Q ss_pred hCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhccc
Q psy9584 75 QLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDK 154 (466)
Q Consensus 75 ~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~ 154 (466)
.|.++.+...++++++.....+ ..++.||.++...||++.|++.++.++...-... .++..+..+.. ..
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~----~a~~~L~~l~~--~~- 432 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT----NAVRGLANLYR--QQ- 432 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH--hc-
Confidence 9999999999999999875442 3556789999999999999999999987754221 22222222211 00
Q ss_pred CccHHHHHHH-----------------------HHhhHhhhhccccchHhhHHHHHHHHHH------------Hhhhhhh
Q psy9584 155 KVNDAVQLLT-----------------------QAGYQVENWTGSQYQKEYLKVFFLVLQV------------CHYLMAG 199 (466)
Q Consensus 155 ~~~~v~~al~-----------------------~~~~l~~~~~g~~~~~e~L~~~~~~L~i------------~~~l~~g 199 (466)
+.++....++ ..+.+... .|. +.+.+..|-..+++ ..+...|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~--~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGK--WAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 1111111111 11111111 222 34444444444332 2355677
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCCCc---c--C-CCCCCc---ccccCcch----hHHHHHHHHH---HhhhhhHHH
Q psy9584 200 QVKSVKPCLKQLQQSILTIMQPTWPSDEV---V--S-GPNVGD---MFIWMPKE----HLYVVVYLVT---VIGHLKFFG 263 (466)
Q Consensus 200 ~v~~~k~~lkqLq~~~q~i~~~~w~~~~~---~--~-~~~~~~---~f~WLpk~----~l~aLvyl~t---v~~~lk~Fl 263 (466)
+...+...++++-. . .|..+..-- + . ..++.. .++.+|.. .+..|.--+. .+.....+.
T Consensus 510 ~~~~A~~~l~~al~---~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 510 QRSQADALMRRLAQ---Q--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred CHHHHHHHHHHHHH---c--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 77777777665522 1 222110000 0 0 001111 22222221 1111110000 000011134
Q ss_pred hcCchhhHHhhhhc-chhhHHHHHHHHHHHHHhCCCch---HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcH
Q psy9584 264 VTGTAGTEVERLSQ-ERELWTFANLNLAIVYLRGKREG---DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARY 339 (466)
Q Consensus 264 v~G~~~~eAl~~~~-~~~~~~~~~lNlai~Yl~~~~~~---e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~ 339 (466)
..|+... |++... .|+ ..-+.+++|.+|...++.. ++++..-++.|... .....+ + ......+++
T Consensus 585 ~~G~~~e-A~~~l~~~p~-~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~-~a~~~l-a-------~~~~~~g~~ 653 (1157)
T PRK11447 585 DSGKEAE-AEALLRQQPP-STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA-DARLGL-I-------EVDIAQGDL 653 (1157)
T ss_pred HCCCHHH-HHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHH-H-------HHHHHCCCH
Confidence 5555433 444322 222 2234588999999977433 35555555667432 111111 2 222678999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCc
Q psy9584 340 NEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDP 419 (466)
Q Consensus 340 ~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~ 419 (466)
.+|.++++..++...+.. .....+|.++...|++++|.+....++..+.+.++..-.-.....+.++|+..|++
T Consensus 654 ~eA~~~l~~ll~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 654 AAARAQLAKLPATANDSL------NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHHHHHHHHHhccCCCCh------HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 999999998887543322 23556899999999999999999999998877765311122233458999999999
Q ss_pred hHHHHHHHHHH
Q psy9584 420 VRENEALQMHC 430 (466)
Q Consensus 420 ~~~~e~~~~~~ 430 (466)
++|.+.|+.-+
T Consensus 728 ~~A~~~y~~Al 738 (1157)
T PRK11447 728 QQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHH
Confidence 99999887665
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.94 E-value=4.3e-06 Score=92.57 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=46.3
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly 413 (466)
+.+|++.+|.++++++++..... ..+..++.++...|+.++|.+.+...+.. .|+. ..+...+.++|
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~---~~~~~~la~~~ 780 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWLKT---HPND---AVLRTALAELY 780 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHH
Confidence 56677777777777766654332 23344566666666666666666555442 2332 23445556666
Q ss_pred HHcCCchHHHHHHH
Q psy9584 414 KILNDPVRENEALQ 427 (466)
Q Consensus 414 ~~~g~~~~~~e~~~ 427 (466)
...|++++|.+.++
T Consensus 781 ~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 781 LAQKDYDKAIKHYR 794 (899)
T ss_pred HHCcCHHHHHHHHH
Confidence 66666666665544
No 5
>KOG1130|consensus
Probab=98.92 E-value=5.1e-08 Score=100.70 Aligned_cols=290 Identities=17% Similarity=0.158 Sum_probs=204.9
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHH
Q psy9584 67 VLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSR 146 (466)
Q Consensus 67 lLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~ 146 (466)
+=++=.+++|...+-...+..+++--.....-....|.||+++|..-+||+.|+++..--+.+|+-.||+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk---------- 91 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK---------- 91 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch----------
Confidence 3367778888888888889999888765545567788899999999999999999999999999999999
Q ss_pred HHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC
Q psy9584 147 CMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSD 226 (466)
Q Consensus 147 ~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~ 226 (466)
.+|. .+-.+.|...+- .|. +.|++-..++-|++. ++|...+..-.
T Consensus 92 ---------lGEA-KssgNLGNtlKv-~G~--fdeA~~cc~rhLd~a---------------reLgDrv~e~R------- 136 (639)
T KOG1130|consen 92 ---------LGEA-KSSGNLGNTLKV-KGA--FDEALTCCFRHLDFA---------------RELGDRVLESR------- 136 (639)
T ss_pred ---------hccc-cccccccchhhh-hcc--cchHHHHHHHHhHHH---------------HHHhHHHhhhH-------
Confidence 5542 222334555554 466 788898888889998 88876654311
Q ss_pred CccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh--------------------------HHhhh---hc
Q psy9584 227 EVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT--------------------------EVERL---SQ 277 (466)
Q Consensus 227 ~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~--------------------------eAl~~---~~ 277 (466)
||-+|.+| |...|-..- |-|++ .+
T Consensus 137 ---------------------AlYNlgnv------YhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg 189 (639)
T KOG1130|consen 137 ---------------------ALYNLGNV------YHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG 189 (639)
T ss_pred ---------------------HHhhhhhh------hhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 25566666 322221100 11222 33
Q ss_pred chhhHHHHHHHHHHHHHh-CCCc-h-HH----HHHHhhhCCC-ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHH
Q psy9584 278 ERELWTFANLNLAIVYLR-GKRE-G-DF----AALLERINPE-TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRET 349 (466)
Q Consensus 278 ~~~~~~~~~lNlai~Yl~-~~~~-~-e~----~~~l~~i~~~-~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~ 349 (466)
|+-....++=|||.+|-. +..+ + .+ -.+.++.++. ..--.+.+| |+. + .+-+++..|-++|..|
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl-gN~-h------iflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL-GNC-H------IFLGNFELAIEHYKLT 261 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc-chh-h------hhhcccHhHHHHHHHH
Confidence 455555677888888776 3333 2 11 1222333322 111233445 444 3 5678888888888888
Q ss_pred HHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q psy9584 350 LKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMH 429 (466)
Q Consensus 350 lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~ 429 (466)
+-+|...+..-.-+++-..||..|.-++.++.|..+-..-+.+|+...|+.-++-+.--|..-|...|+..+|+-+.++|
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888877777778888888888888888888
Q ss_pred HHHHHHH
Q psy9584 430 CNFSQML 436 (466)
Q Consensus 430 ~~~s~~l 436 (466)
...|..+
T Consensus 342 l~~s~ev 348 (639)
T KOG1130|consen 342 LRSSLEV 348 (639)
T ss_pred HHHHHHh
Confidence 8877665
No 6
>KOG1840|consensus
Probab=98.90 E-value=1.5e-06 Score=93.72 Aligned_cols=269 Identities=15% Similarity=0.128 Sum_probs=170.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc---hhhhhHHH-HHHHHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 57 FDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ---HSIYWHCR-LIFQLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 57 ~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~---~~~~W~~~-~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
.+..+-+..+.||..|...|+++.|-++.++++++-. +...-..+ .+..+|.+|...+.|..|+.+|+.++.+-..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4446666666677777777777777776666666642 11111111 1123566666667777777777666666654
Q ss_pred h-cChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q psy9584 133 S-NAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQL 211 (466)
Q Consensus 133 ~-~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqL 211 (466)
. |-. ...|..++++...++-+ +|. ..|+-..+-..+.|. ++
T Consensus 274 ~~G~~-------------------h~~va~~l~nLa~ly~~-~GK--f~EA~~~~e~Al~I~---------------~~- 315 (508)
T KOG1840|consen 274 VFGED-------------------HPAVAATLNNLAVLYYK-QGK--FAEAEEYCERALEIY---------------EK- 315 (508)
T ss_pred hcCCC-------------------CHHHHHHHHHHHHHHhc-cCC--hHHHHHHHHHHHHHH---------------HH-
Confidence 2 211 33344445555555544 343 344444444433333 11
Q ss_pred HHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhhHHhhhhcchhhHHHHHHHHHH
Q psy9584 212 QQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVERLSQERELWTFANLNLAI 291 (466)
Q Consensus 212 q~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai 291 (466)
+.. .+..-.+-...|++.
T Consensus 316 ------~~~--------------------------------------------------------~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 316 ------LLG--------------------------------------------------------ASHPEVAAQLSELAA 333 (508)
T ss_pred ------hhc--------------------------------------------------------cChHHHHHHHHHHHH
Confidence 111 133444556678888
Q ss_pred HHHhCCC-c-h-HHHHHH-hhhC----CC--ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhh--h
Q psy9584 292 VYLRGKR-E-G-DFAALL-ERIN----PE--TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDL--N 359 (466)
Q Consensus 292 ~Yl~~~~-~-~-e~~~~l-~~i~----~~--~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l--~ 359 (466)
+|...++ + + .+++.. +.+. +. .++...-.| |.. | +++|+|+||.+++++++++.++-+. .
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl-~~l-~------~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL-AEL-Y------LKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH-HHH-H------HHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 8888763 2 2 244433 2222 11 223334444 444 4 8999999999999999999999877 5
Q ss_pred hHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcC--CChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy9584 360 RLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKI--PDVHVQLWASAILKDLYKILNDPVRENEALQMHCNFSQ 434 (466)
Q Consensus 360 ~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~--~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~s~ 434 (466)
.-++-.+.-||..|.+.+++++|.++...+.+|. |. ||.+....+..=|..+|+.+|+++.|.++.+--.+..+
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 6667788999999999999999999999999999 54 45556688889999999999999999877665554443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.85 E-value=5.3e-06 Score=91.79 Aligned_cols=339 Identities=18% Similarity=0.147 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHH
Q psy9584 22 THLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCR 101 (466)
Q Consensus 22 ~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~ 101 (466)
+...+|.++.. ..+.++|...+++++... + ........++++|...|.+..+..++++.++.....+ .
T Consensus 535 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~---~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 602 (899)
T TIGR02917 535 AILALAGLYLR-TGNEEEAVAWLEKAAELN---P----QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP----E 602 (899)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhC---c----cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----H
Confidence 44455555433 556666666666654431 1 1124556788888888888888888888776554331 3
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHh
Q psy9584 102 LIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKE 181 (466)
Q Consensus 102 ~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e 181 (466)
.++.++.++...|+++.|++.++..++... .....+..++.+...+. +. +.++....++.+..+. ..
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~--~~---~~A~~~~~~~~~~~~~---~~- 669 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQP----DSALALLLLADAYAVMK--NY---AKAITSLKRALELKPD---NT- 669 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcC--CH---HHHHHHHHHHHhcCCC---CH-
Confidence 445677888888888888888887765432 12233344444332221 11 1222222222221111 11
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC----CCccC--CCCCCc-------ccccCcchhHHH
Q psy9584 182 YLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPS----DEVVS--GPNVGD-------MFIWMPKEHLYV 248 (466)
Q Consensus 182 ~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~----~~~~~--~~~~~~-------~f~WLpk~~l~a 248 (466)
..+... ...+...|+...+...++.+... .|.-+. -+.+. ..+..+ .+.--|.. .+
T Consensus 670 --~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 738 (899)
T TIGR02917 670 --EAQIGL--AQLLLAAKRTESAKKIAKSLQKQ-----HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QN 738 (899)
T ss_pred --HHHHHH--HHHHHHcCCHHHHHHHHHHHHhh-----CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hH
Confidence 111111 11122344444444444433221 110000 00000 000000 00000111 11
Q ss_pred HHHHHHHhhhhhHHHhcCchhh--H----HhhhhcchhhHHHHHHHHHHHHHhCCCchH---HHHHHhhhCCCccccccc
Q psy9584 249 VVYLVTVIGHLKFFGVTGTAGT--E----VERLSQERELWTFANLNLAIVYLRGKREGD---FAALLERINPETLTSHSH 319 (466)
Q Consensus 249 Lvyl~tv~~~lk~Flv~G~~~~--e----Al~~~~~~~~~~~~~lNlai~Yl~~~~~~e---~~~~l~~i~~~~~~~~~~ 319 (466)
+.++..+ +.-.|+... + +++. +|+ ...+..++|.+|...|+..+ .++.+-+.+|+.. ....
T Consensus 739 ~~~l~~~------~~~~g~~~~A~~~~~~~l~~--~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~ 808 (899)
T TIGR02917 739 AIKLHRA------LLASGNTAEAVKTLEAWLKT--HPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA-VVLN 808 (899)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH-HHHH
Confidence 2233333 445555543 1 2222 122 23567788888888774433 4444434455311 1111
Q ss_pred hhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh
Q psy9584 320 SLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 320 ~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~ 399 (466)
.+ + ......++ ++|+.++++++++..... ..+..+|.++...|++++|.+....++..... |.
T Consensus 809 ~l-~-------~~~~~~~~-~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~ 871 (899)
T TIGR02917 809 NL-A-------WLYLELKD-PRALEYAEKALKLAPNIP------AILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AA 871 (899)
T ss_pred HH-H-------HHHHhcCc-HHHHHHHHHHHhhCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--Ch
Confidence 11 2 12245666 789999998888654332 23457888899999999999999888876654 32
Q ss_pred hHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 400 HVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 400 ~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
.+...+.++|...|+++.|.+.++
T Consensus 872 ----~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 872 ----AIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233446778888999888876543
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.82 E-value=3.8e-06 Score=92.68 Aligned_cols=279 Identities=13% Similarity=0.106 Sum_probs=164.5
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhH
Q psy9584 22 THLQLGNILL--THTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWH 99 (466)
Q Consensus 22 ~rLrla~lL~--~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~ 99 (466)
..+++|.... ...++.++|...+++++......+ -...++..++.+|...|++..+...++++++.....
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~----~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---- 364 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE----KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV---- 364 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----
Confidence 3445554333 345678889999998887643222 333567888999999998888999999988886543
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccch
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQ 179 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~ 179 (466)
...++.+|.++...||++.|++.++++++..- ....+++.++.++..+ .+.+ .++......++. .|
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p----~~~~~~~~lg~~~~~~--g~~~---~A~~~~~kal~l---~P-- 430 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS----EDPDIYYHRAQLHFIK--GEFA---QAGKDYQKSIDL---DP-- 430 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHc---Cc--
Confidence 23445678888888999999999988876532 2234444444443222 1112 222222222221 11
Q ss_pred HhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhh
Q psy9584 180 KEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHL 259 (466)
Q Consensus 180 ~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~l 259 (466)
.....++. ..+.+...|+...+...+++.- +. .|.
T Consensus 431 -~~~~~~~~--la~~~~~~g~~~eA~~~~~~al---~~--~P~------------------------------------- 465 (615)
T TIGR00990 431 -DFIFSHIQ--LGVTQYKEGSIASSMATFRRCK---KN--FPE------------------------------------- 465 (615)
T ss_pred -cCHHHHHH--HHHHHHHCCCHHHHHHHHHHHH---Hh--CCC-------------------------------------
Confidence 01112222 1222333444444444333221 11 111
Q ss_pred hHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCch---HHHHHHhhhCCCccccccchhhHHHHHHHhHHHh-h
Q psy9584 260 KFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREG---DFAALLERINPETLTSHSHSLRAAAYYVQGLQSF-F 335 (466)
Q Consensus 260 k~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~---e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~-~ 335 (466)
+ ..+..++|.+|...|+-. ++++.+-.+.|+.-. ....+-.. +-.+...+ .
T Consensus 466 ------------------~----~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l--~~~a~~~~~~ 520 (615)
T TIGR00990 466 ------------------A----PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPL--INKALALFQW 520 (615)
T ss_pred ------------------C----hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHH--HHHHHHHHHH
Confidence 1 235677899999977432 356665566665211 11111011 11122223 3
Q ss_pred hhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCC
Q psy9584 336 QARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPD 398 (466)
Q Consensus 336 ~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D 398 (466)
.+++.+|.+++++++++..... .++..+|.+++..|++++|.+....+..+++...+
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~------~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECD------IAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 5999999999999999754332 25778999999999999999999999999987665
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.79 E-value=2.6e-05 Score=86.13 Aligned_cols=344 Identities=14% Similarity=0.041 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhh
Q psy9584 19 EARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYW 98 (466)
Q Consensus 19 Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W 98 (466)
.|......|..++ .-.+++.|..++++++.+... ...++.+|.||...|++..+...+.+++++-.++
T Consensus 126 ~a~~~k~~G~~~~-~~~~~~~Ai~~y~~al~~~p~--------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~--- 193 (615)
T TIGR00990 126 YAAKLKEKGNKAY-RNKDFNKAIKLYSKAIECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY--- 193 (615)
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC---
Confidence 3666778888754 468899999999999876432 2468899999999999999999999999987544
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHH------HHHHHHHHHhcccCcc-HHHHHHHHHhhH--
Q psy9584 99 HCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVL------FLLSRCMLLLIDKKVN-DAVQLLTQAGYQ-- 169 (466)
Q Consensus 99 ~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~l------f~ls~~~~ll~~~~~~-~v~~al~~~~~l-- 169 (466)
...++.+|.++...|+|..|+..+........-.+...-.++ ++..++...+...... .....+......
T Consensus 194 -~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 272 (615)
T TIGR00990 194 -SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR 272 (615)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc
Confidence 355677899999999999999888654433211111100111 0111111111111000 000001000000
Q ss_pred --------hhhhccccchH-hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCccccc
Q psy9584 170 --------VENWTGSQYQK-EYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIW 240 (466)
Q Consensus 170 --------~~~~~g~~~~~-e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~W 240 (466)
.+.....+... ..+.... ........+....+-... +... .. .-
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~e~~~~~~y~~A~~~~---~~al---~~------------------~~ 325 (615)
T TIGR00990 273 PKPRPAGLEDSNELDEETGNGQLQLGL---KSPESKADESYEEAARAF---EKAL---DL------------------GK 325 (615)
T ss_pred CCcchhhhhcccccccccccchHHHHH---HHHHhhhhhhHHHHHHHH---HHHH---hc------------------CC
Confidence 00000000000 0000000 000001111111111111 1111 10 00
Q ss_pred CcchhHHHHHHHHHHhhhhhHHHhcCchhh------HHhhhhcchhhHHHHHHHHHHHHHhCCCch---HHHHHHhhhCC
Q psy9584 241 MPKEHLYVVVYLVTVIGHLKFFGVTGTAGT------EVERLSQERELWTFANLNLAIVYLRGKREG---DFAALLERINP 311 (466)
Q Consensus 241 Lpk~~l~aLvyl~tv~~~lk~Flv~G~~~~------eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~---e~~~~l~~i~~ 311 (466)
+......++..+..+ +..+|+... +|+.. +|+ ..-+++++|.+|...++.. ++++.+-+++|
T Consensus 326 ~~~~~a~a~~~lg~~------~~~~g~~~eA~~~~~kal~l--~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 396 (615)
T TIGR00990 326 LGEKEAIALNLRGTF------KCLKGKHLEALADLSKSIEL--DPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396 (615)
T ss_pred CChhhHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 112333445555555 667777654 24443 232 2335678899999877433 24444444555
Q ss_pred CccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHH
Q psy9584 312 ETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQ 391 (466)
Q Consensus 312 ~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~ 391 (466)
.. +.+++..|...+..|++.+|.+++++++++..... .++..+|.+++..|++++|+.....++.
T Consensus 397 ~~---------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 397 ED---------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI------FSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 12234455555889999999999999999865543 2356799999999999999999999997
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q psy9584 392 LASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMHCNF 432 (466)
Q Consensus 392 lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~ 432 (466)
..-+.++ ....+.++|...|++++|.+.+..-...
T Consensus 462 ~~P~~~~------~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 462 NFPEAPD------VYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred hCCCChH------HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 6433333 3456788899999999998877765544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.74 E-value=2.2e-05 Score=80.45 Aligned_cols=275 Identities=14% Similarity=0.062 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHH
Q psy9584 23 HLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRL 102 (466)
Q Consensus 23 rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~ 102 (466)
....|.. +..+.+.+.|..++++++.+- +. -.+++..++.+|...|+++.+..++++.+.............
T Consensus 38 ~y~~g~~-~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 38 DYFKGLN-FLLNEQPDKAIDLFIEMLKVD---PE----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred HHHHHHH-HHhcCChHHHHHHHHHHHhcC---cc----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3344443 356788999999999987651 21 246788999999999999999999998887543233445567
Q ss_pred HHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhh
Q psy9584 103 IFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEY 182 (466)
Q Consensus 103 ~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~ 182 (466)
++.+|.++...||++.|.+.++...+. +......+..++.++.. ..+ .++++.....+.+.-... ....
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~--~g~---~~~A~~~~~~~~~~~~~~--~~~~ 178 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQ--EKD---WQKAIDVAERLEKLGGDS--LRVE 178 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHH--hch---HHHHHHHHHHHHHhcCCc--chHH
Confidence 788999999999999999999887654 22223333333333211 111 122222222222211000 0001
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHH
Q psy9584 183 LKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFF 262 (466)
Q Consensus 183 L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~F 262 (466)
+..++. .....++..|+...+...+++.-
T Consensus 179 ~~~~~~-~la~~~~~~~~~~~A~~~~~~al-------------------------------------------------- 207 (389)
T PRK11788 179 IAHFYC-ELAQQALARGDLDAARALLKKAL-------------------------------------------------- 207 (389)
T ss_pred HHHHHH-HHHHHHHhCCCHHHHHHHHHHHH--------------------------------------------------
Confidence 111111 11222333444444444443321
Q ss_pred HhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHHHhh---hCCCccccccchhhHHHHHHHhHHHhhhhcH
Q psy9584 263 GVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGDFAALLER---INPETLTSHSHSLRAAAYYVQGLQSFFQARY 339 (466)
Q Consensus 263 lv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l~~---i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~ 339 (466)
+. +++. ..+.+++|.+|.+.++..+..+.+++ .+|... ..+......++ ...|++
T Consensus 208 -----------~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~~l~~~~--~~~g~~ 265 (389)
T PRK11788 208 -----------AA--DPQC-VRASILLGDLALAQGDYAAAIEALERVEEQDPEYL------SEVLPKLMECY--QALGDE 265 (389)
T ss_pred -----------hH--CcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH------HHHHHHHHHHH--HHcCCH
Confidence 11 1221 23567788888887754443333332 233110 00111122333 567889
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh
Q psy9584 340 NEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 340 ~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~ 399 (466)
++|.++++++++..... ..+..++.++...|+.++|.+.+..++.. .||.
T Consensus 266 ~~A~~~l~~~~~~~p~~-------~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~ 315 (389)
T PRK11788 266 AEGLEFLRRALEEYPGA-------DLLLALAQLLEEQEGPEAAQALLREQLRR---HPSL 315 (389)
T ss_pred HHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCH
Confidence 99999999888864321 12367888899999999999888888765 4664
No 11
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=0.00011 Score=84.02 Aligned_cols=340 Identities=14% Similarity=0.127 Sum_probs=214.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc-hhhhhHHHHHHHHH
Q psy9584 31 LTHTKNIDLARNHLEQAWHLSQSIN--AFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ-HSIYWHCRLIFQLA 107 (466)
Q Consensus 31 ~~~T~N~~~A~~hLeka~~L~~~~~--~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~-~~~~W~~~~~fqLA 107 (466)
+..+.+.++|..+++++........ .-.+.+.+...+++.++...|+++.+...++.+++... ............++
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 3567789999999999877544322 12256777788899999999999999999999988543 32222333455689
Q ss_pred HHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHH
Q psy9584 108 QIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFF 187 (466)
Q Consensus 108 ~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~ 187 (466)
.++...||+..|...++.+...+...|++...+......+.+++..-+.++....+.++-.+.+.. |.+ .. ....+.
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~~~-~~-~~~~~~ 575 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ-HLE-QL-PMHEFL 575 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-ccc-cc-cHHHHH
Confidence 999999999999999999999999999988777766655666665555555555555555554442 221 00 111111
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCc
Q psy9584 188 LVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGT 267 (466)
Q Consensus 188 ~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~ 267 (466)
......-+...|+...+...+.+.-....... |.....++..+..+ ....|+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----------------------~~~~~~~~~~la~~------~~~~G~ 627 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----------------------PQQQLQCLAMLAKI------SLARGD 627 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----------------------chHHHHHHHHHHHH------HHHcCC
Confidence 11222223456888888777755433221100 11223334444444 667787
Q ss_pred hhh------HHhhhhcch---hhHHHHHHHHH-HHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhh
Q psy9584 268 AGT------EVERLSQER---ELWTFANLNLA-IVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337 (466)
Q Consensus 268 ~~~------eAl~~~~~~---~~~~~~~lNla-i~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~ 337 (466)
... +++.+.... ..+.....++. ..+...+........++...+...... ... .....+.|.-...+|
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~-~~~~~~~a~~~~~~g 705 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN-HFL-QGQWRNIARAQILLG 705 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc-hhH-HHHHHHHHHHHHHcC
Confidence 755 233332211 11111112222 333344444444444544333211111 111 111123444447889
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHH
Q psy9584 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403 (466)
Q Consensus 338 ~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~ql 403 (466)
++.+|..++++++..+...+..+..+.+++++|..+...|+.++|...+..|+++|....-+...+
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~r~f~ 771 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFISHFV 771 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchhhhHH
Confidence 999999999999999988888888899999999999999999999999999999998877653343
No 12
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.71 E-value=3.5e-05 Score=87.49 Aligned_cols=342 Identities=11% Similarity=-0.018 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhH
Q psy9584 20 ARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWH 99 (466)
Q Consensus 20 a~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~ 99 (466)
+.++.-+|..+ .-..+.++|..++++++.+. |...+ +...|+.++...|.++.+...+++.++.....+.
T Consensus 49 a~~~~~lA~~~-~~~g~~~~A~~~~~~al~~~---P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-- 118 (765)
T PRK10049 49 ARGYAAVAVAY-RNLKQWQNSLTLWQKALSLE---PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-- 118 (765)
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--
Confidence 34444455443 34456667777777766542 21222 3346677777777777777777777766544422
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHH----------hc-----------------
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLL----------LI----------------- 152 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~l----------l~----------------- 152 (466)
.+.+|.++...|++..|+..++.++...-. ++.+. ..++.++.. +.
T Consensus 119 ---~~~la~~l~~~g~~~~Al~~l~~al~~~P~--~~~~~--~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~ 191 (765)
T PRK10049 119 ---LLALAYVYKRAGRHWDELRAMTQALPRAPQ--TQQYP--TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAA 191 (765)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHH--HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334566667777777777777776665442 22111 111211110 00
Q ss_pred ----------c-cC---ccHHHHHHHHHhhHhhhhccccchHhh-HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q psy9584 153 ----------D-KK---VNDAVQLLTQAGYQVENWTGSQYQKEY-LKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILT 217 (466)
Q Consensus 153 ----------~-~~---~~~v~~al~~~~~l~~~~~g~~~~~e~-L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~ 217 (466)
. .+ .....+++.....+.+.+...|..... .+..+- ++--.+..|+...+...++++....+.
T Consensus 192 ~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d--~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 192 AELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID--RLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH--HHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 0 00 011123444444555444444433221 111111 111123446666666665554321100
Q ss_pred hcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh--HHhhh--hcchh---hHHHHHHHHH
Q psy9584 218 IMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT--EVERL--SQERE---LWTFANLNLA 290 (466)
Q Consensus 218 i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~--eAl~~--~~~~~---~~~~~~lNla 290 (466)
.|. ++.+++..+ ++-+|++.. +.++. ..++. .......+++
T Consensus 270 --~P~------------------------~a~~~la~~------yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 270 --IPP------------------------WAQRWVASA------YLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred --CCH------------------------HHHHHHHHH------HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 111 123334445 667777654 22221 11222 1234566777
Q ss_pred HHHHhCCCchHHHHH---HhhhCCCc-----ccc--cc-chhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhh
Q psy9584 291 IVYLRGKREGDFAAL---LERINPET-----LTS--HS-HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLN 359 (466)
Q Consensus 291 i~Yl~~~~~~e~~~~---l~~i~~~~-----~~~--~~-~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~ 359 (466)
..|...++..+..+. +...+|+. .+. ++ ..+ .+.+..|.....+|++++|.+.+++++..+....
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~--~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~-- 393 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL--QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ-- 393 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Confidence 778887755543333 33444531 111 11 112 1223444455789999999999999998766553
Q ss_pred hHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy9584 360 RLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEAL 426 (466)
Q Consensus 360 ~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~ 426 (466)
..++.++.++...|+.++|++.++.+..+. ||..- ++....+ ++...|++++|...+
T Consensus 394 ----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~~-l~~~~a~--~al~~~~~~~A~~~~ 450 (765)
T PRK10049 394 ----GLRIDYASVLQARGWPRAAENELKKAEVLE---PRNIN-LEVEQAW--TALDLQEWRQMDVLT 450 (765)
T ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCChH-HHHHHHH--HHHHhCCHHHHHHHH
Confidence 256689999999999999999999998876 66433 5544443 788899999886644
No 13
>KOG4626|consensus
Probab=98.70 E-value=7.1e-07 Score=96.09 Aligned_cols=251 Identities=20% Similarity=0.224 Sum_probs=162.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHH
Q psy9584 30 LLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQI 109 (466)
Q Consensus 30 L~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i 109 (466)
+|....|.-+|..|+|+|..| .|.|.| |+..|+.+|...+.+..|.....+++.++-++..=++ ++|-|
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkl---dP~f~d----AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g----Nla~i 295 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKL---DPNFLD----AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG----NLACI 295 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcC---CCcchH----HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc----ceEEE
Confidence 355666777888888887666 344554 7788888888888888888888888888865544444 57888
Q ss_pred hcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHH
Q psy9584 110 HAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLV 189 (466)
Q Consensus 110 ~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~ 189 (466)
|..+|+.+-|+..++.+++.-- + ...++++.+...+. .|. -.|..+.|-++
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P--~------------------------F~~Ay~NlanALkd-~G~--V~ea~~cYnka 346 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQP--N------------------------FPDAYNNLANALKD-KGS--VTEAVDCYNKA 346 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCC--C------------------------chHHHhHHHHHHHh-ccc--hHHHHHHHHHH
Confidence 8888888888888887765422 1 12223332222222 133 45556667777
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchh
Q psy9584 190 LQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAG 269 (466)
Q Consensus 190 L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~ 269 (466)
|+.|- .
T Consensus 347 L~l~p-------------------------~------------------------------------------------- 352 (966)
T KOG4626|consen 347 LRLCP-------------------------N------------------------------------------------- 352 (966)
T ss_pred HHhCC-------------------------c-------------------------------------------------
Confidence 77660 0
Q ss_pred hHHhhhhcchhhHHHHHHHHHHHHHhCCC--ch-HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHH
Q psy9584 270 TEVERLSQERELWTFANLNLAIVYLRGKR--EG-DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYL 346 (466)
Q Consensus 270 ~eAl~~~~~~~~~~~~~lNlai~Yl~~~~--~~-e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~l 346 (466)
-+-+..|||.+|.-+++ ++ .+|.+.-.++|++ +....+| |.+ | --||++++|..+|
T Consensus 353 ------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNL-a~i-~------kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 353 ------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNL-ASI-Y------KQQGNLDDAIMCY 411 (966)
T ss_pred ------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhH-HHH-H------HhcccHHHHHHHH
Confidence 12245677888877663 22 3666666677743 3344555 544 5 6678888888888
Q ss_pred HHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy9584 347 RETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEAL 426 (466)
Q Consensus 347 re~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~ 426 (466)
+|+++|.. ..+.+|+-||..|-..|+..+|..+-+.|.++- +..--+.+=|.-+|+..|+...|-..|
T Consensus 412 kealrI~P------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 412 KEALRIKP------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHhcCc------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 88887654 356677778888877777777777777776642 223345566777777777777666544
Q ss_pred H
Q psy9584 427 Q 427 (466)
Q Consensus 427 ~ 427 (466)
.
T Consensus 480 ~ 480 (966)
T KOG4626|consen 480 R 480 (966)
T ss_pred H
Confidence 3
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.67 E-value=3.8e-05 Score=78.80 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=88.1
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccch
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLS 81 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~a 81 (466)
|+..++.++...| +. +.++..+|.++ ....+.++|..++++++.. .+.-...+..+...||.+|...|.+..+
T Consensus 54 A~~~~~~al~~~p-~~--~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 54 AIDLFIEMLKVDP-ET--VELHLALGNLF-RRRGEVDRAIRIHQNLLSR---PDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred HHHHHHHHHhcCc-cc--HHHHHHHHHHH-HHcCcHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4556666665543 22 45677788775 4677899999999987652 1212345678899999999999999999
Q ss_pred hHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 82 KPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 82 k~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
..++.++++..... ...+..++.++..+|+++.|++.++......
T Consensus 127 ~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 127 EELFLQLVDEGDFA----EGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHHHHHcCCcch----HHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 99999998764322 3455678999999999999999999877643
No 15
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.67 E-value=0.00018 Score=79.78 Aligned_cols=336 Identities=17% Similarity=0.118 Sum_probs=208.1
Q ss_pred chHHHHHHHHHHHHHHHH-hCCccchhHHHHHHHHhhc--hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Q psy9584 57 FDDVKFEAASVLAELYET-QLLSNLSKPILRRAIELSQ--HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANIS 133 (466)
Q Consensus 57 ~~d~K~~a~slLa~~y~~-~~~~~~ak~~l~k~i~~s~--~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~ 133 (466)
-++..+....-||+++.. +.....|+..|.|++.+.+ +.....|+..|.++.++...+-.. |..++++.++..+..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 447888889999999997 4478999999999999997 344445666677899876666555 999999999999999
Q ss_pred cChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhh--hhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q psy9584 134 NAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVE--NWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQL 211 (466)
Q Consensus 134 ~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~--~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqL 211 (466)
+.......|++.++...+...| ...++.....+.. +-.|.| .+.+++..+.-+=.+..|.... .++.+
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d---~~~Al~~L~~~~~~a~~~~d~----~~~v~~~l~~~~l~l~~~~~~d---~~~~l 202 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKD---YNAALENLQSIAQLANQRGDP----AVFVLASLSEALLHLRRGSPDD---VLELL 202 (608)
T ss_pred CchhHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHhhhcCCH----HHHHHHHHHHHHHHhcCCCchh---HHHHH
Confidence 9999999999998888776633 3344444433333 224664 7777777666554444443333 34444
Q ss_pred HHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh--HHhhhhcchhhHHHHHHHH
Q psy9584 212 QQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT--EVERLSQERELWTFANLNL 289 (466)
Q Consensus 212 q~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~--eAl~~~~~~~~~~~~~lNl 289 (466)
+..+..+..+.|..+. ..+++.++.-++.+.+ ++-.|+... +.++ .+..+..-+.
T Consensus 203 ~~~~~~~~~~q~~~~~--------------~~~qL~~~~lll~l~~----~l~~~~~~~~~~~L~-----~lq~~~~~~~ 259 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSV--------------HIPQLKALFLLLDLCC----SLQQGDVKNSKQKLK-----QLQQFLDEIK 259 (608)
T ss_pred HHHHHHHhhcccCCCC--------------CcHHHHHHHHHHHHHH----HHHcCCHHHHHHHHH-----HHHHHHHHhh
Confidence 4443333333222111 2345666655555422 122232111 1111 0011110000
Q ss_pred HHHHHhCCCchH-HHHHHh--hh--C---CCccc-cccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhh---
Q psy9584 290 AIVYLRGKREGD-FAALLE--RI--N---PETLT-SHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAED--- 357 (466)
Q Consensus 290 ai~Yl~~~~~~e-~~~~l~--~i--~---~~~~~-~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~--- 357 (466)
...--.. -+.+ ...+-- .. + +..+. =+...+.+-+|+|+|+.....++.++|.+|+.+++++..+..
T Consensus 260 ~~~~w~~-~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 260 KSPSWPS-WDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred cCccCCC-cCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 0000000 0000 000000 00 0 11111 123445688889999999999999999999999999887765
Q ss_pred -----------------hhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh---hHHHHHHHHHHHHHHHcC
Q psy9584 358 -----------------LNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV---HVQLWASAILKDLYKILN 417 (466)
Q Consensus 358 -----------------l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~---~~qlw~~~lL~~ly~~~g 417 (466)
...+.+..+...++..+..++..++.+......+...+.|+. ...-...=+..=.+...|
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g 418 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTG 418 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcC
Confidence 124556668889999999999999999999999999999883 222233333333455778
Q ss_pred CchHHHHHHH
Q psy9584 418 DPVRENEALQ 427 (466)
Q Consensus 418 ~~~~~~e~~~ 427 (466)
|.+.|..+|.
T Consensus 419 ~l~~A~~~y~ 428 (608)
T PF10345_consen 419 DLEAALYQYQ 428 (608)
T ss_pred CHHHHHHHHh
Confidence 9999999886
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.61 E-value=0.00015 Score=85.95 Aligned_cols=95 Identities=20% Similarity=0.152 Sum_probs=75.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchh---hhh-------H
Q psy9584 30 LLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHS---IYW-------H 99 (466)
Q Consensus 30 L~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~---~~W-------~ 99 (466)
.+....+.++|...+++++.+- +.. .++...||.+|.+.|+++.|...++++++..... ..| .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~---P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN---PKD----SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 3455788999999999998752 222 4678899999999999999999999999987532 234 3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
|.....++.++...|+++.|++.++..+...-
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34455678899999999999999999888743
No 17
>KOG1840|consensus
Probab=98.52 E-value=3.4e-05 Score=83.42 Aligned_cols=225 Identities=17% Similarity=0.182 Sum_probs=154.8
Q ss_pred HHHHhcccccHHHHHHHHHhHHHHHHH-hcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHH
Q psy9584 106 LAQIHAGEKDYELASSLLGVGVDYANI-SNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLK 184 (466)
Q Consensus 106 LA~i~~~~~D~~~A~~~L~~g~~~A~~-~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~ 184 (466)
||..|..+|+|+.|+..++.+++...+ .|.. ...|...++.++.++-+ .+. +.+++.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------------------hl~va~~l~~~a~~y~~-~~k--~~eAv~ 262 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------------------HLVVASMLNILALVYRS-LGK--YDEAVN 262 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------------------CHHHHHHHHHHHHHHHH-hcc--HHHHHH
Confidence 999999999999999999999998654 3322 33455555556666655 344 677777
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHh
Q psy9584 185 VFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGV 264 (466)
Q Consensus 185 ~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv 264 (466)
+|-..|+|- ++. -++
T Consensus 263 ly~~AL~i~---------------------e~~-~G~------------------------------------------- 277 (508)
T KOG1840|consen 263 LYEEALTIR---------------------EEV-FGE------------------------------------------- 277 (508)
T ss_pred HHHHHHHHH---------------------HHh-cCC-------------------------------------------
Confidence 777777766 222 232
Q ss_pred cCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCC--ch-HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHH
Q psy9584 265 TGTAGTEVERLSQERELWTFANLNLAIVYLRGKR--EG-DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNE 341 (466)
Q Consensus 265 ~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~--~~-e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~e 341 (466)
+....+.+..|||..|.++++ ++ ++++..-+|-.........-+.+....+.++ -...+++++
T Consensus 278 -------------~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~Ee 343 (508)
T KOG1840|consen 278 -------------DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI-LQSMNEYEE 343 (508)
T ss_pred -------------CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH-HHHhcchhH
Confidence 244556778999999999774 34 3555444444332222333343433333322 258999999
Q ss_pred HHHHHHHHHHhhh--hhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCC-----hhHHHHHHHHHHHHHH
Q psy9584 342 AKRYLRETLKMAN--AEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPD-----VHVQLWASAILKDLYK 414 (466)
Q Consensus 342 Ak~~lre~lk~a~--~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D-----~~~qlw~~~lL~~ly~ 414 (466)
|+.+|++++++-. -...+..++=...-||..|+..|+++||++|.+.|+++++...+ ...-+|- |...|-
T Consensus 344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~---la~~~~ 420 (508)
T KOG1840|consen 344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ---LAEAYE 420 (508)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH---HHHHHH
Confidence 9999999999988 33556577778999999999999999999999999999966555 3344443 344556
Q ss_pred HcCCchHHHHHHHHHHHHHH
Q psy9584 415 ILNDPVRENEALQMHCNFSQ 434 (466)
Q Consensus 415 ~~g~~~~~~e~~~~~~~~s~ 434 (466)
.++++..|.+-|....++.+
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred HhcccchHHHHHHHHHHHHH
Confidence 77888878777766666663
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.51 E-value=7.8e-05 Score=83.36 Aligned_cols=138 Identities=9% Similarity=0.075 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhCCC-c-----h-HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhh
Q psy9584 283 TFANLNLAIVYLRGKR-E-----G-DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANA 355 (466)
Q Consensus 283 ~~~~lNlai~Yl~~~~-~-----~-e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~ 355 (466)
.-+..++|.+|...++ + + ..++.+-++.|... ++. +-.|.....+|++.+|..+++++++....
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~-------~a~--~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV-------RIV--TLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH-------HHH--HHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3455678888888663 2 2 23344444555311 111 22234447788999999999998886544
Q ss_pred hhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q psy9584 356 EDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMHCNFSQM 435 (466)
Q Consensus 356 ~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~s~~ 435 (466)
.. .+...+|.++...|++++|.+....+... .|+.. .| ...+..+|...|++++|.+.++........
T Consensus 317 ~~------~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~--~~-~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 317 LP------YVRAMYARALRQVGQYTAASDEFVQLARE---KGVTS--KW-NRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred CH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccch--HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 32 23446888888899999988887766553 45532 11 122356677889999888877765555333
Q ss_pred HHHHHh
Q psy9584 436 LLKDHF 441 (466)
Q Consensus 436 l~~~~~ 441 (466)
...+++
T Consensus 385 ~~~~~~ 390 (656)
T PRK15174 385 HLPQSF 390 (656)
T ss_pred hchhhH
Confidence 333333
No 19
>KOG1130|consensus
Probab=98.48 E-value=8.9e-06 Score=84.47 Aligned_cols=282 Identities=15% Similarity=0.085 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhhc--hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHH
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELSQ--HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRV 140 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~--~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~ 140 (466)
..+|-|+..|+..++|+.|...=.++|.+.+ +......+..=.|+++....|.|+.|+-.++.-+++|++.||.-.+
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e- 134 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLE- 134 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhh-
Confidence 3456666666666677777777777777777 6677778877789999999999999999999999999999998322
Q ss_pred HHHHHHHHHHhcccCccHHHHHHHHHhhHhh---hhccccc--------------hHhhHHHHHHHHHHHhhhhhhhhhh
Q psy9584 141 LFLLSRCMLLLIDKKVNDAVQLLTQAGYQVE---NWTGSQY--------------QKEYLKVFFLVLQVCHYLMAGQVKS 203 (466)
Q Consensus 141 lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~---~~~g~~~--------------~~e~L~~~~~~L~i~~~l~~g~v~~ 203 (466)
.+++=++|.++- .+.|.+. ...+.++|..-|.+.
T Consensus 135 -------------------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~---------- 185 (639)
T KOG1130|consen 135 -------------------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS---------- 185 (639)
T ss_pred -------------------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH----------
Confidence 233333333332 1111110 111233333333332
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh------HHhhh--
Q psy9584 204 VKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT------EVERL-- 275 (466)
Q Consensus 204 ~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~------eAl~~-- 275 (466)
+.+....-. +. +...|++. |+.+|++.+ +-|.+
T Consensus 186 -----~~lgDr~aq--GR--------------------------a~GnLGNT------yYlLGdf~~ai~~H~~RL~ia~ 226 (639)
T KOG1130|consen 186 -----EKLGDRLAQ--GR--------------------------AYGNLGNT------YYLLGDFDQAIHFHKLRLEIAQ 226 (639)
T ss_pred -----HHhhhHHhh--cc--------------------------hhcccCce------eeeeccHHHHHHHHHHHHHHHH
Confidence 222211100 10 12334444 788888865 22222
Q ss_pred -hcchhhHHHHHHHHHHHHHhCC-C-ch-HHHHH----HhhhCCC-ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHH
Q psy9584 276 -SQERELWTFANLNLAIVYLRGK-R-EG-DFAAL----LERINPE-TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYL 346 (466)
Q Consensus 276 -~~~~~~~~~~~lNlai~Yl~~~-~-~~-e~~~~----l~~i~~~-~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~l 346 (466)
.+|+-....++-|||..|+--+ . .+ +.|.+ +-++... .-+-+.-+| |+. | +.-..+++|-.|.
T Consensus 227 efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSL-gNt-y------tll~e~~kAI~Yh 298 (639)
T KOG1130|consen 227 EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSL-GNT-Y------TLLKEVQKAITYH 298 (639)
T ss_pred HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHh-hhH-H------HHHHHHHHHHHHH
Confidence 5677777789999999998844 3 23 55443 3555554 335566667 655 3 4567899999999
Q ss_pred HHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchH
Q psy9584 347 RETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVR 421 (466)
Q Consensus 347 re~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~ 421 (466)
+.-|+||++-++..--.-+...||..|-.+|+.++|+..+...+++++..+|.+-.+=+--=|.|+-...|.++.
T Consensus 299 ~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 299 QRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 999999999999888888999999999999999999999999999999999998777776667788888886655
No 20
>KOG2300|consensus
Probab=98.44 E-value=0.0012 Score=70.04 Aligned_cols=352 Identities=18% Similarity=0.205 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHH-hCCccchhHHHHHHHHhhchhh---hhHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhc
Q psy9584 60 VKFEAASVLAELYET-QLLSNLSKPILRRAIELSQHSI---YWHCRLIFQLAQIHAGEK-DYELASSLLGVGVDYANISN 134 (466)
Q Consensus 60 ~K~~a~slLa~~y~~-~~~~~~ak~~l~k~i~~s~~~~---~W~~~~~fqLA~i~~~~~-D~~~A~~~L~~g~~~A~~~~ 134 (466)
++.....-||.+.+. +.+++.||+-|.++..+++..| .--+.-...||++|.... .+..|--.|.+++++++ +
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq--~ 121 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ--S 121 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc--C
Confidence 444444444555444 4468999999999999998432 223334446888886554 89999999999999999 5
Q ss_pred ChHH--HHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy9584 135 AQYT--RVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQ 212 (466)
Q Consensus 135 d~~~--~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq 212 (466)
.|+. +.+|-|+++| -+++|....-.+|+. |... .++..-++++++|...+.--.+++-|...+.+.+.-..
T Consensus 122 ~p~wsckllfQLaql~--~idkD~~sA~elLav-ga~s----Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~ 194 (629)
T KOG2300|consen 122 VPYWSCKLLFQLAQLH--IIDKDFPSALELLAV-GAES----ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCG 194 (629)
T ss_pred CchhhHHHHHHHHHHH--hhhccchhHHHHHhc-cccc----cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 5555 5566666555 345555433333322 2211 12224468888887666555566666555555554444
Q ss_pred HHHHHhcCCCCCCCCc------------------------------------cCCCCCCcccccCcchhHHHHHHHHHH-
Q psy9584 213 QSILTIMQPTWPSDEV------------------------------------VSGPNVGDMFIWMPKEHLYVVVYLVTV- 255 (466)
Q Consensus 213 ~~~q~i~~~~w~~~~~------------------------------------~~~~~~~~~f~WLpk~~l~aLvyl~tv- 255 (466)
+..++++ ++ |.+-+ +.+++.++.-+|||.....-++++...
T Consensus 195 qi~~n~~-sd-k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeq 272 (629)
T KOG2300|consen 195 QIWQNIS-SD-KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQ 272 (629)
T ss_pred HHHhccC-CC-hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhh
Confidence 3333311 11 11111 222345778899999999988887762
Q ss_pred hhhhhHH-------HhcCchh--h----HHhhhhcc---hh-----hHHH---HHHHHHHHHHhCCCchH-HHHHHhhhC
Q psy9584 256 IGHLKFF-------GVTGTAG--T----EVERLSQE---RE-----LWTF---ANLNLAIVYLRGKREGD-FAALLERIN 310 (466)
Q Consensus 256 ~~~lk~F-------lv~G~~~--~----eAl~~~~~---~~-----~~~~---~~lNlai~Yl~~~~~~e-~~~~l~~i~ 310 (466)
|+-+= + ++-|-+. + ||+..++. .+ ...| ..=|+++.=+-.++..+ ..++.+--+
T Consensus 273 icaLV-~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~ 351 (629)
T KOG2300|consen 273 ICALV-YLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKN 351 (629)
T ss_pred hHhhh-hhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22110 2 2223221 1 56665322 12 1111 11222222222343322 222221111
Q ss_pred ---CCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhH--------------------------
Q psy9584 311 ---PETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRL-------------------------- 361 (466)
Q Consensus 311 ---~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l-------------------------- 361 (466)
..--+.-.+.--+-+.++-|+.+...|.|+.|-..+++++|.-+.+|+--.
T Consensus 352 w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~ 431 (629)
T KOG2300|consen 352 WCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG 431 (629)
T ss_pred HHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC
Confidence 100011122224667899999999999999999999999998888776211
Q ss_pred ------------HHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHcCCchHHHH
Q psy9584 362 ------------TSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV-HVQLWASAILKDLYKILNDPVRENE 424 (466)
Q Consensus 362 ------------~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~-~~qlw~~~lL~~ly~~~g~~~~~~e 424 (466)
-+..+..-|-..+..+++.||...+..++++| +.-|. ...--+.-+|..++...||..++.+
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 11113444555557788999999999999999 55553 2222233678999999999988865
No 21
>KOG2002|consensus
Probab=98.39 E-value=2.8e-05 Score=87.56 Aligned_cols=349 Identities=16% Similarity=0.132 Sum_probs=221.4
Q ss_pred cchhHHHhhcCCC--ChhHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhC
Q psy9584 2 CIQCLQAVFNFKP--PPRVEARTHLQLGNILLTHT---KNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQL 76 (466)
Q Consensus 2 ai~CLeAvl~~~~--~p~~Ea~~rLrla~lL~~~T---~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~ 76 (466)
++.|++.|++..| +..+. =||.++.+.. .-.|.|..++.++.. .+-.-.++.-.||++|.+.+
T Consensus 361 s~~~fEkv~k~~p~~~etm~-----iLG~Lya~~~~~~~~~d~a~~~l~K~~~-------~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 361 SKFCFEKVLKQLPNNYETMK-----ILGCLYAHSAKKQEKRDKASNVLGKVLE-------QTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHHHHHHHHHhCcchHHHHH-----HHHhHHHhhhhhhHHHHHHHHHHHHHHh-------cccccHHHHHHHHHHHHhcC
Confidence 5789999998766 34443 3566644442 235777778877643 34566789999999999999
Q ss_pred CccchhHHHHHHHHhhc-hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcC------hHHHHHHHHHHHHH
Q psy9584 77 LSNLSKPILRRAIELSQ-HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNA------QYTRVLFLLSRCML 149 (466)
Q Consensus 77 ~~~~ak~~l~k~i~~s~-~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d------~~~~~lf~ls~~~~ 149 (466)
+++. ..++.+++++-. +...---..++.+|..|..-|++..|.+++..+...+...-+ ..+-+-+.++++.=
T Consensus 429 ~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 PWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred hHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 9997 999999997774 111122344568999999999999999999998888553222 22222333333331
Q ss_pred HhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCCc
Q psy9584 150 LLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPT-WPSDEV 228 (466)
Q Consensus 150 ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~-w~~~~~ 228 (466)
.|... . .+.+++.++. ..+..++..|.+.+ |.--..+.+..+...+++.-+.++. .|+ |.--|.
T Consensus 508 ~l~~~--~-------~A~e~Yk~Il--kehp~YId~ylRl~--~ma~~k~~~~ea~~~lk~~l~~d~~--np~arsl~G~ 572 (1018)
T KOG2002|consen 508 ELHDT--E-------VAEEMYKSIL--KEHPGYIDAYLRLG--CMARDKNNLYEASLLLKDALNIDSS--NPNARSLLGN 572 (1018)
T ss_pred hhhhh--h-------HHHHHHHHHH--HHCchhHHHHHHhh--HHHHhccCcHHHHHHHHHHHhcccC--CcHHHHHHHH
Confidence 11111 1 1233444331 12444566665533 3333346677777777777555433 322 111110
Q ss_pred --cCCC--CCC-ccc-----ccCcchhHHHHHHHHHHhhhhhHHHhcCchhh----------HHhhhh----cchhhHHH
Q psy9584 229 --VSGP--NVG-DMF-----IWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT----------EVERLS----QERELWTF 284 (466)
Q Consensus 229 --~~~~--~~~-~~f-----~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~----------eAl~~~----~~~~~~~~ 284 (466)
+..+ .++ +.| +=+.+++.|+|+-|++++ |--+++++. .|+... +...--.+
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~-----~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY-----IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH-----HHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 0000 011 111 223337789998888872 233444433 266652 23333457
Q ss_pred HHHHHHHHHHhCCCchHHHHHHhhhCCC--ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHH
Q psy9584 285 ANLNLAIVYLRGKREGDFAALLERINPE--TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLT 362 (466)
Q Consensus 285 ~~lNlai~Yl~~~~~~e~~~~l~~i~~~--~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~ 362 (466)
+..-+|+|.--.++-.+...++.+|-.. .++....+| |.+ | +-+++|..|-+.|..+++.--..+...+.
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl-ah~-~------~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL-AHC-Y------VEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH-HHH-H------HHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 8888899998888766666666555544 245567777 777 5 77899999999999999988877777766
Q ss_pred HhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhc
Q psy9584 363 SCSLVLLGHIFLSLGNHRESMNMVTPAMQLASK 395 (466)
Q Consensus 363 ~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK 395 (466)
. .||.+++.-|.+++|.+.+++|+.++=.
T Consensus 720 ~----~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 720 H----YLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred H----HHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 6 8999999999999999999999988643
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.25 E-value=0.0043 Score=70.74 Aligned_cols=351 Identities=12% Similarity=-0.017 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhH
Q psy9584 20 ARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWH 99 (466)
Q Consensus 20 a~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~ 99 (466)
+-=+++++ .+..++++|....+++..+ .. .-..++..+|..+...|++..|..+++++++..-+.+.
T Consensus 18 ~~d~~~ia----~~~g~~~~A~~~~~~~~~~-~~------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-- 84 (765)
T PRK10049 18 IADWLQIA----LWAGQDAEVITVYNRYRVH-MQ------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-- 84 (765)
T ss_pred HHHHHHHH----HHcCCHHHHHHHHHHHHhh-CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Confidence 33445554 4578899999888887542 22 22456889999999999999999999999999754422
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhh------
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENW------ 173 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~------ 173 (466)
+.+.+|.++...|++..|+..|++.+...- +++. ++.++.++... .+..+...++.++-.+.+..
T Consensus 85 --a~~~la~~l~~~g~~~eA~~~l~~~l~~~P--~~~~---~~~la~~l~~~--g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 85 --YQRGLILTLADAGQYDEALVKAKQLVSGAP--DKAN---LLALAYVYKRA--GRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH---HHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 224788888999999999999999987744 3333 44444333222 11111111121111111100
Q ss_pred -------ccccchHhhHHHHH------------------HHHHHHhhhh---hhhhhhhhHHHHHHHHHHHHh-cCCCCC
Q psy9584 174 -------TGSQYQKEYLKVFF------------------LVLQVCHYLM---AGQVKSVKPCLKQLQQSILTI-MQPTWP 224 (466)
Q Consensus 174 -------~g~~~~~e~L~~~~------------------~~L~i~~~l~---~g~v~~~k~~lkqLq~~~q~i-~~~~w~ 224 (466)
.|. ..+.++.+- ..+++..... .+.......-+++++...+.. ..|.
T Consensus 156 la~~l~~~~~--~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~-- 231 (765)
T PRK10049 156 YVQALRNNRL--SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD-- 231 (765)
T ss_pred HHHHHHHCCC--hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc--
Confidence 111 111121111 1111111000 001111122222333222220 0110
Q ss_pred CCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh--HHhhh-h-cchhhHHHHHHHHHHHHHhCCCch
Q psy9584 225 SDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT--EVERL-S-QERELWTFANLNLAIVYLRGKREG 300 (466)
Q Consensus 225 ~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~--eAl~~-~-~~~~~~~~~~lNlai~Yl~~~~~~ 300 (466)
. .| ....+.+..+.. ++..|+... +..+. . .++..-.++...+|.+|+..++..
T Consensus 232 -----------~----~~-~~~~a~~d~l~~------Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e 289 (765)
T PRK10049 232 -----------A----TA-DYQRARIDRLGA------LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPE 289 (765)
T ss_pred -----------c----ch-HHHHHHHHHHHH------HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0 00 011111111111 344555433 11111 1 111112223344688999988655
Q ss_pred HHHHHHhhhCC--CccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhh---------hhHHHhHHHHH
Q psy9584 301 DFAALLERINP--ETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDL---------NRLTSCSLVLL 369 (466)
Q Consensus 301 e~~~~l~~i~~--~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l---------~~l~~~~l~ll 369 (466)
+..+.++++-. +..+.......+.+ ..++ .-++++++|.+++++........-. +---..++.++
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L--~~a~--~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADL--FYSL--LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHH--HHHH--HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 44444433321 11111112222222 2233 7899999999999999876432100 00112345689
Q ss_pred HHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q psy9584 370 GHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 370 g~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~ 428 (466)
+.++...|+.++|++.+..+... .|+. .+.-..+..+|...|++++|.+.++.
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~---~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYN---APGN---QGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999998887655 5665 23445677899999999999886554
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.23 E-value=0.0034 Score=66.06 Aligned_cols=309 Identities=11% Similarity=0.036 Sum_probs=172.7
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhH
Q psy9584 21 RTHLQLG-NILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWH 99 (466)
Q Consensus 21 ~~rLrla-~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~ 99 (466)
|.+-.+- .++.....|.+.|+.++.++.... +-..-.+-+.|+.+.+.|++..+...+.++.+...+..
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~--- 152 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN--- 152 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---
Confidence 4444444 445566788999999998875432 22344566779999999999999999999877654331
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccch
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQ 179 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~ 179 (466)
..+....|.++..+||++.|.+.++...+.+- +++ .++..+..+.+. ..+.+++...+... .+.-...+..
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P--~~~--~~l~ll~~~~~~--~~d~~~a~~~l~~l---~k~~~~~~~~ 223 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEMAP--RHK--EVLKLAEEAYIR--SGAWQALDDIIDNM---AKAGLFDDEE 223 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCH--HHHHHHHHHHHH--HhhHHHHHHHHHHH---HHcCCCCHHH
Confidence 12233458888899999999888877776653 333 344444444422 22223333333222 2210111111
Q ss_pred HhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhh
Q psy9584 180 KEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHL 259 (466)
Q Consensus 180 ~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~l 259 (466)
-..++... -+..+..|......+.+..+ -+. .|
T Consensus 224 ~~~l~~~a----~~~~l~~~~~~~~~~~L~~~---~~~--~p-------------------------------------- 256 (409)
T TIGR00540 224 FADLEQKA----EIGLLDEAMADEGIDGLLNW---WKN--QP-------------------------------------- 256 (409)
T ss_pred HHHHHHHH----HHHHHHHHHHhcCHHHHHHH---HHH--CC--------------------------------------
Confidence 11112100 11111222221111122111 111 00
Q ss_pred hHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHHH---hhhCCCccccccchhhHHHHHHHhHHHhhh
Q psy9584 260 KFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGDFAALL---ERINPETLTSHSHSLRAAAYYVQGLQSFFQ 336 (466)
Q Consensus 260 k~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l---~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~ 336 (466)
.......-+....|..+...|...+..+.+ -+..|+.-......+ ..+.....
T Consensus 257 -----------------~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l-------~~~~~l~~ 312 (409)
T TIGR00540 257 -----------------RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLC-------LPIPRLKP 312 (409)
T ss_pred -----------------HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHH-------HHhhhcCC
Confidence 000012334556677888877554433443 223343211110122 22222445
Q ss_pred hcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHc
Q psy9584 337 ARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKIL 416 (466)
Q Consensus 337 ~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~ 416 (466)
++..++.+.+...++...+ +.. +..+..+|+++++.|++++|.+....+..+... ||..+ ..-|.+++...
T Consensus 313 ~~~~~~~~~~e~~lk~~p~--~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~~~----~~~La~ll~~~ 383 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDD--KPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDAND----LAMAADAFDQA 383 (409)
T ss_pred CChHHHHHHHHHHHHhCCC--Chh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCHHH----HHHHHHHHHHc
Confidence 7788899999888874333 332 456668999999999999999999965555543 66533 33678999999
Q ss_pred CCchHHHHHHHH
Q psy9584 417 NDPVRENEALQM 428 (466)
Q Consensus 417 g~~~~~~e~~~~ 428 (466)
|+++.|.++++.
T Consensus 384 g~~~~A~~~~~~ 395 (409)
T TIGR00540 384 GDKAEAAAMRQD 395 (409)
T ss_pred CCHHHHHHHHHH
Confidence 999999887763
No 24
>KOG2002|consensus
Probab=98.22 E-value=0.0016 Score=73.75 Aligned_cols=337 Identities=15% Similarity=0.134 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHH
Q psy9584 59 DVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYT 138 (466)
Q Consensus 59 d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~ 138 (466)
-++.++++.+||+||.+|++..|+..+..++....++ +---.+.|++.+..+||...|.-.+++.+..-. .+..-|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm 379 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN---FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETM 379 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC---ccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHH
Confidence 4788889999999999999999999999999888755 111234799999999999999988887665432 222333
Q ss_pred HHHHHHHHHHHHhc------ccCccHH----------HHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhh-------
Q psy9584 139 RVLFLLSRCMLLLI------DKKVNDA----------VQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHY------- 195 (466)
Q Consensus 139 ~~lf~ls~~~~ll~------~~~~~~v----------~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~------- 195 (466)
.++..|. .+.+ ++..+-+ .++.-...++++. ++| ... |.+|-..+++.+.
T Consensus 380 ~iLG~Ly---a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~--~d~-~~s-L~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 380 KILGCLY---AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ--TDP-WAS-LDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred HHHHhHH---HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh--cCh-HHH-HHHHHHHHHHHHHcCCCCCH
Confidence 3333222 2111 0000000 1121222344443 232 333 6666666655443
Q ss_pred ----------hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhh----hH
Q psy9584 196 ----------LMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHL----KF 261 (466)
Q Consensus 196 ----------l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~l----k~ 261 (466)
++.|+...+...+++-.........+ | .+.... ++ --|-|.-+.--+|+- +|
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~----d-------e~~~~~-lt--~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK----D-------EGKSTN-LT--LKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc----c-------ccccch-hH--HHHHHHHHHHhhhhhhHHHHH
Confidence 23333333333332221110000110 1 110000 00 011111111122200 11
Q ss_pred --------------HHhcCchhh-------------HHhhh-hcchhhHHHHH-HHHHHHHHhCCCchHHHHHHhhhCCC
Q psy9584 262 --------------FGVTGTAGT-------------EVERL-SQERELWTFAN-LNLAIVYLRGKREGDFAALLERINPE 312 (466)
Q Consensus 262 --------------Flv~G~~~~-------------eAl~~-~~~~~~~~~~~-lNlai~Yl~~~~~~e~~~~l~~i~~~ 312 (466)
++-+|-.++ ++++. ..+|+.|+|++ +.++.---+.+ ...+..++.+....
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a-~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA-KKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc-ccHHHHHHhhhccC
Confidence 233332221 36666 55688888765 55542222211 12355555555444
Q ss_pred ccccccchhhHHHHHHHhHHHhhhh------cHHHHHHHHHHHHHhhhh-----hhhhhHHH------------------
Q psy9584 313 TLTSHSHSLRAAAYYVQGLQSFFQA------RYNEAKRYLRETLKMANA-----EDLNRLTS------------------ 363 (466)
Q Consensus 313 ~~~~~~~~L~a~~~yv~~~~~~~~~------~~~eAk~~lre~lk~a~~-----~~l~~l~~------------------ 363 (466)
.=+.+...| |++ |+.+++--..+ .+.+|++.|.++|+..+. ++...+.+
T Consensus 598 ~D~YsliaL-GN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 598 TDAYSLIAL-GNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CchhHHHHh-hHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 334566666 774 76666544333 355666666666664411 11111111
Q ss_pred -----hHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 364 -----CSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 364 -----~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
-.++-+||+|+..|.+..|.+|-...+..--+..|..|. +.|.+.+-..|+...+.++..
T Consensus 676 ~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl----~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 676 TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL----HYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH----HHHHHHHHHhhhHHHHHHHHH
Confidence 126789999999999999999999999888888886554 678888889999999888653
No 25
>KOG2076|consensus
Probab=98.20 E-value=0.0063 Score=68.65 Aligned_cols=363 Identities=16% Similarity=0.089 Sum_probs=188.2
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc-
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ- 93 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~- 93 (466)
-+-.|++.++..|++||-+ .|.++|...+.-.|..... -+.+++.||+||.+.|+...+.+ -.+-.+.
T Consensus 134 ~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~-------~~~ay~tL~~IyEqrGd~eK~l~---~~llAAHL 202 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPR-------NPIAYYTLGEIYEQRGDIEKALN---FWLLAAHL 202 (895)
T ss_pred ccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcc-------chhhHHHHHHHHHHcccHHHHHH---HHHHHHhc
Confidence 4557899999999999999 8999999999987765322 25799999999999995443322 1111221
Q ss_pred ---hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHH--------------HHHHHhcChHHHHHHHHHHHHH-HhcccC
Q psy9584 94 ---HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGV--------------DYANISNAQYTRVLFLLSRCML-LLIDKK 155 (466)
Q Consensus 94 ---~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~--------------~~A~~~~d~~~~~lf~ls~~~~-ll~~~~ 155 (466)
++..| +.+|.....+|.+..|.-.+.+++ .+-.+.|+. ++.+++-. +++-.+
T Consensus 203 ~p~d~e~W-----~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-----~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 203 NPKDYELW-----KRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-----KRAMETFLQLLQLDP 272 (895)
T ss_pred CCCChHHH-----HHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-----HHHHHHHHHHHhhCC
Confidence 33444 456777666677777766655554 334445553 22222322 222222
Q ss_pred ccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhh-h----------hhhhHHHHHHHHHHHHhcCC---
Q psy9584 156 VNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQ-V----------KSVKPCLKQLQQSILTIMQP--- 221 (466)
Q Consensus 156 ~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~-v----------~~~k~~lkqLq~~~q~i~~~--- 221 (466)
+.+.++..+.+-.++............++.+..-+.++...-.+. + +.....++.+..--+.-+.+
T Consensus 273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 333344333332222111111111223333333333332222222 1 11111222221111110111
Q ss_pred CCCCCCccCCCCCCcccccCcchhHHHH--HHHHHHhhhhhHHHhcCchhhHHhhh-hcc----hhhHHHHHHHHHHHHH
Q psy9584 222 TWPSDEVVSGPNVGDMFIWMPKEHLYVV--VYLVTVIGHLKFFGVTGTAGTEVERL-SQE----RELWTFANLNLAIVYL 294 (466)
Q Consensus 222 ~w~~~~~~~~~~~~~~f~WLpk~~l~aL--vyl~tv~~~lk~Flv~G~~~~eAl~~-~~~----~~~~~~~~lNlai~Yl 294 (466)
.|-.++.- ..+...|-=.|++--+-| ++++...+++|- +. ..|++-. .-. ++--.=.++++|-.|.
T Consensus 353 e~~~~~~~--~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~----~e-~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 353 EWDTDERR--REEPNALCEVGKELSYDLRVIRLMICLVHLKE----RE-LLEALLHFLVEDNVWVSDDVDLYLDLADALT 425 (895)
T ss_pred hhhhhhhc--cccccccccCCCCCCccchhHhHhhhhhcccc----cc-hHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Confidence 12222210 000001111111110000 233322222211 00 0033333 111 2223346789999999
Q ss_pred hCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHH
Q psy9584 295 RGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFL 374 (466)
Q Consensus 295 ~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l 374 (466)
+-++-++....+..|... +++.+ +.++|-.|---.-.+.|++|.++|..+|+.++...+.|+ .|+.++.
T Consensus 426 ~~~~~~~Al~~l~~i~~~---~~~~~--~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri------~Lasl~~ 494 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNR---EGYQN--AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI------TLASLYQ 494 (895)
T ss_pred hcccHHHHHHHHHHHhcC---ccccc--hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh------hHHHHHH
Confidence 977555555555444431 12222 444454555558899999999999999999999988776 4788999
Q ss_pred hcCChHHHHHhhHHHHHHhhcCCC---hhH-----HHHHHHHHHHHHHHcCCchH
Q psy9584 375 SLGNHRESMNMVTPAMQLASKIPD---VHV-----QLWASAILKDLYKILNDPVR 421 (466)
Q Consensus 375 ~~~~~~ea~~~~~~a~~lAkK~~D---~~~-----qlw~~~lL~~ly~~~g~~~~ 421 (466)
.+||.++|-..+.+=. .|| ..- ..-...-..++|...||.++
T Consensus 495 ~~g~~EkalEtL~~~~-----~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 495 QLGNHEKALETLEQII-----NPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred hcCCHHHHHHHHhccc-----CCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999998888733 444 111 12223566789999998876
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.16 E-value=0.0017 Score=72.81 Aligned_cols=292 Identities=10% Similarity=0.068 Sum_probs=182.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHH
Q psy9584 24 LQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLI 103 (466)
Q Consensus 24 Lrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~ 103 (466)
+++--+-+....+.+.|...++..+...... .++.++|+.+....|++..+...+++.++..-+. ...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~----~~a~ 113 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-------RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ----PEDV 113 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC----hHHH
Confidence 3333333467778888888888765542221 4678889999999999999999999999988644 2345
Q ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhH
Q psy9584 104 FQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYL 183 (466)
Q Consensus 104 fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L 183 (466)
+.+|.++...||++.|++.++..+.+.- ++ ..+...++.+. ....+.++...++. ++...-.+. .+
T Consensus 114 ~~la~~l~~~g~~~~Ai~~l~~Al~l~P--~~--~~a~~~la~~l--~~~g~~~eA~~~~~---~~~~~~P~~---~~-- 179 (656)
T PRK15174 114 LLVASVLLKSKQYATVADLAEQAWLAFS--GN--SQIFALHLRTL--VLMDKELQAISLAR---TQAQEVPPR---GD-- 179 (656)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc--HHHHHHHHHHH--HHCCChHHHHHHHH---HHHHhCCCC---HH--
Confidence 6789999999999999999999987633 22 33444444442 22222232222222 232221111 11
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHH
Q psy9584 184 KVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFG 263 (466)
Q Consensus 184 ~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Fl 263 (466)
.++. + ..++..|+...+...++++- +. .|.
T Consensus 180 -a~~~-~--~~l~~~g~~~eA~~~~~~~l---~~--~~~----------------------------------------- 209 (656)
T PRK15174 180 -MIAT-C--LSFLNKSRLPEDHDLARALL---PF--FAL----------------------------------------- 209 (656)
T ss_pred -HHHH-H--HHHHHcCCHHHHHHHHHHHH---hc--CCC-----------------------------------------
Confidence 1222 1 22566788777766655441 11 110
Q ss_pred hcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCchH---HHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHH
Q psy9584 264 VTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGD---FAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYN 340 (466)
Q Consensus 264 v~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e---~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~ 340 (466)
+.. ....+++.+|.+.++..+ .+..+-++.|.. + .+.+--|......|++.
T Consensus 210 --------------~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-~--------~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 210 --------------ERQ---ESAGLAVDTLCAVGKYQEAIQTGESALARGLDG-A--------ALRRSLGLAYYQSGRSR 263 (656)
T ss_pred --------------cch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-H--------HHHHHHHHHHHHcCCch
Confidence 011 112455777777775433 333333455532 1 11122333347789998
Q ss_pred H----HHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHc
Q psy9584 341 E----AKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKIL 416 (466)
Q Consensus 341 e----Ak~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~ 416 (466)
+ |..+++++++..... ..++..+|.++...|++++|...+..++.+.-..++ +...|..+|...
T Consensus 264 eA~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~------a~~~La~~l~~~ 331 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY------VRAMYARALRQV 331 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHC
Confidence 6 899999999876532 245668999999999999999999999987533322 334578999999
Q ss_pred CCchHHHHHHHH
Q psy9584 417 NDPVRENEALQM 428 (466)
Q Consensus 417 g~~~~~~e~~~~ 428 (466)
|++++|.+.++.
T Consensus 332 G~~~eA~~~l~~ 343 (656)
T PRK15174 332 GQYTAASDEFVQ 343 (656)
T ss_pred CCHHHHHHHHHH
Confidence 999999876643
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.16 E-value=0.012 Score=67.62 Aligned_cols=327 Identities=14% Similarity=0.037 Sum_probs=190.7
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHhhch-----hhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHH
Q psy9584 66 SVLAELYETQLLSNLSKPILRRAIELSQH-----SIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRV 140 (466)
Q Consensus 66 slLa~~y~~~~~~~~ak~~l~k~i~~s~~-----~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~ 140 (466)
...+.++...|.+..+...+..+.+.... .+.+.......++.++...||++.|...++.+..... .++.....
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~ 491 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRI 491 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHH
Confidence 45677777788888888888877655431 2233445555678888999999999999998877532 23443333
Q ss_pred HHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q psy9584 141 LFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQ 220 (466)
Q Consensus 141 lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~ 220 (466)
.+....+.++...-+.++....+.++-.+... .|.+ + ......... ..-++..|+...+...+.+--........
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~-~g~~-~-~~~~~~~~l--a~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQ-HDVY-H-YALWSLLQQ--SEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-hcch-H-HHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 33333333333333333334444555444444 2332 1 112222221 22246689999998888776544333111
Q ss_pred CCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh------HHhhhhc--chhhHHHHHHHHHHH
Q psy9584 221 PTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT------EVERLSQ--ERELWTFANLNLAIV 292 (466)
Q Consensus 221 ~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~------eAl~~~~--~~~~~~~~~lNlai~ 292 (466)
+. .| ...++...+..+ ....|+... +|+.... .+.....+..++|.+
T Consensus 567 ~~------------------~~-~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 567 EQ------------------LP-MHEFLLRIRAQL------LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred cc------------------cc-HHHHHHHHHHHH------HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 00 00 011112223333 556677654 3444321 122334567789999
Q ss_pred HHhCCCchH---HHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHH
Q psy9584 293 YLRGKREGD---FAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLL 369 (466)
Q Consensus 293 Yl~~~~~~e---~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~ll 369 (466)
+...++..+ .......+.+..- .....+ +....+........|+..+|.+.+........ +........+..+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~~~~~~~ 697 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGR-YHSDWI-ANADKVRLIYWQMTGDKEAAANWLRQAPKPEF--ANNHFLQGQWRNI 697 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccc-ccHhHh-hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--ccchhHHHHHHHH
Confidence 999875433 2233333322210 000000 11111111222457899999999888665322 2222233345678
Q ss_pred HHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 370 GHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 370 g~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
+.++...|++++|...+..++..+...++......+..++...|...|++++|.+...
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999988888999999999999999999877443
No 28
>KOG4626|consensus
Probab=98.01 E-value=9.2e-05 Score=80.28 Aligned_cols=242 Identities=20% Similarity=0.198 Sum_probs=165.5
Q ss_pred cchhHHHhhcCCC--ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCcc
Q psy9584 2 CIQCLQAVFNFKP--PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSN 79 (466)
Q Consensus 2 ai~CLeAvl~~~~--~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~ 79 (466)
||+=++-+++-+| +| +++-||.+| .+-.-+|+|-..++||..+.... ..++..||-+|+.+|..+
T Consensus 237 aiq~y~eAvkldP~f~d-----AYiNLGnV~-ke~~~~d~Avs~Y~rAl~lrpn~-------A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 237 AIQHYEEAVKLDPNFLD-----AYINLGNVY-KEARIFDRAVSCYLRALNLRPNH-------AVAHGNLACIYYEQGLLD 303 (966)
T ss_pred HHHHHHHhhcCCCcchH-----HHhhHHHHH-HHHhcchHHHHHHHHHHhcCCcc-------hhhccceEEEEeccccHH
Confidence 5666666665554 33 678888884 55667999999999998875442 357888999999999999
Q ss_pred chhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHH
Q psy9584 80 LSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDA 159 (466)
Q Consensus 80 ~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v 159 (466)
.|....+++|+..-+++.=.| +||+++..-|++..|...+.+++.+.-.+
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~----NlanALkd~G~V~ea~~cYnkaL~l~p~h-------------------------- 353 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYN----NLANALKDKGSVTEAVDCYNKALRLCPNH-------------------------- 353 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHh----HHHHHHHhccchHHHHHHHHHHHHhCCcc--------------------------
Confidence 999999999999988765544 57777777799999999999988775522
Q ss_pred HHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccc
Q psy9584 160 VQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFI 239 (466)
Q Consensus 160 ~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~ 239 (466)
..++++.+-++.+| |. ..+..+.|-..+.+.--+.+.
T Consensus 354 adam~NLgni~~E~-~~--~e~A~~ly~~al~v~p~~aaa---------------------------------------- 390 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQ-GK--IEEATRLYLKALEVFPEFAAA---------------------------------------- 390 (966)
T ss_pred HHHHHHHHHHHHHh-cc--chHHHHHHHHHHhhChhhhhh----------------------------------------
Confidence 23346666666553 43 345666666655544111100
Q ss_pred cCcchhHHHHHHHHHHhhhhhHHHhcCchhh------HHhhhhcchhhHHHHHHHHHHHHHhCCCch---HHHHHHhhhC
Q psy9584 240 WMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT------EVERLSQERELWTFANLNLAIVYLRGKREG---DFAALLERIN 310 (466)
Q Consensus 240 WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~------eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~---e~~~~l~~i~ 310 (466)
-.+|.++ +.-+|+..- ||+++ +.+-+-++.|+|.+|.-+++.. .+|..+-+++
T Consensus 391 ---------~nNLa~i------~kqqgnl~~Ai~~YkealrI---~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 391 ---------HNNLASI------YKQQGNLDDAIMCYKEALRI---KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred ---------hhhHHHH------HHhcccHHHHHHHHHHHHhc---CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 1122222 223333221 45554 2345567889999999877543 3777787788
Q ss_pred CCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhh
Q psy9584 311 PETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE 356 (466)
Q Consensus 311 ~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~ 356 (466)
| .+++...+| |.+ | ---|+..+|-.-|+++||+-.+-
T Consensus 453 P-t~AeAhsNL-asi-~------kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 453 P-TFAEAHSNL-ASI-Y------KDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred c-HHHHHHhhH-HHH-h------hccCCcHHHHHHHHHHHccCCCC
Confidence 8 777777778 666 5 67788999999999999976544
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.98 E-value=0.0067 Score=69.70 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHhhhCC---Cccccccchh-hHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhh---
Q psy9584 282 WTFANLNLAIVYLRGKREGDFAALLERINP---ETLTSHSHSL-RAAAYYVQGLQSFFQARYNEAKRYLRETLKMAN--- 354 (466)
Q Consensus 282 ~~~~~lNlai~Yl~~~~~~e~~~~l~~i~~---~~~~~~~~~L-~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~--- 354 (466)
-.++.-=.|..|+..+++.+...++.++-. +..+.+-... .... ..|+ .-+++|.+|..++.+..+-..
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L--~yA~--ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDL--YYSL--NESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHH--HHHH--HhcccHHHHHHHHHHHHhcCCcEE
Confidence 345566668888886655544444444422 2222111111 2333 3344 789999999999999987333
Q ss_pred --------hhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy9584 355 --------AEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEAL 426 (466)
Q Consensus 355 --------~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~ 426 (466)
....+.+ ....++...+.-.|+..+|++.+... .+..|+. .|.-..++++++..|.|.+|.+.+
T Consensus 402 ~~~~~~~~~pn~d~~--~~~~l~a~~~~~~gdl~~Ae~~le~l---~~~aP~n---~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 402 GVYGLPGKEPNDDWI--EGQTLLVQSLVALNDLPTAQKKLEDL---SSTAPAN---QNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred eccCCCCCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1222334 34567777788899999999999876 5556665 555668999999999999998877
Q ss_pred HH
Q psy9584 427 QM 428 (466)
Q Consensus 427 ~~ 428 (466)
+.
T Consensus 474 k~ 475 (822)
T PRK14574 474 KA 475 (822)
T ss_pred HH
Confidence 55
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.95 E-value=0.0037 Score=57.39 Aligned_cols=127 Identities=14% Similarity=0.180 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhCCCchHHHHHHhhhCCC-ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy9584 285 ANLNLAIVYLRGKREGDFAALLERINPE-TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTS 363 (466)
Q Consensus 285 ~~lNlai~Yl~~~~~~e~~~~l~~i~~~-~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~ 363 (466)
+..|+|.+|...++-.+..+.+++.-.. ..+.. ....+.-|...+..|++.+|.+++.++++..... .
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~ 169 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-----ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------P 169 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------h
Confidence 4567788888876433322222221110 00000 1111223444478999999999999999865432 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q psy9584 364 CSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 364 ~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~ 428 (466)
.++..+|.+++..|++++|...+..+.++ .|+....+| ++.+++...|+.+++.++.+.
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAESLW---LGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH---HHHHHHHHHhhHHHHHHHHHH
Confidence 35678999999999999999999999888 344444455 667889999999999776543
No 31
>KOG4162|consensus
Probab=97.88 E-value=0.0093 Score=66.43 Aligned_cols=350 Identities=20% Similarity=0.251 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccc----hh-------HHHHHHHH
Q psy9584 22 THLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNL----SK-------PILRRAIE 90 (466)
Q Consensus 22 ~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~----ak-------~~l~k~i~ 90 (466)
..+-.+++..+.-++.+++..+-.|++.++. ....+++-.++..+|-+|..+-.-+. -+ +.+.++++
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 4566779999999999999999999999773 33788999999999999987542111 12 34444444
Q ss_pred hhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHH-hhH
Q psy9584 91 LSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQA-GYQ 169 (466)
Q Consensus 91 ~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~-~~l 169 (466)
.-.++| ...|-+|--|+.+++..+|.......++....-.-+....|+.+-- ..+...+...++..+ .+-
T Consensus 473 ~d~~dp----~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS-----a~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 473 FDPTDP----LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS-----AQKRLKEALDVVDAALEEF 543 (799)
T ss_pred cCCCCc----hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHh
Confidence 444664 6677777788889999999999988888866433344444442222 333333322222222 111
Q ss_pred hhhh---cc-------ccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHH-----HHHHHHHHHhcCCCCCCCCccCCCCC
Q psy9584 170 VENW---TG-------SQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCL-----KQLQQSILTIMQPTWPSDEVVSGPNV 234 (466)
Q Consensus 170 ~~~~---~g-------~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~l-----kqLq~~~q~i~~~~w~~~~~~~~~~~ 234 (466)
-+|. -| ..-.-+.|.+...+|++..- +..+++.+ .+++.-.. +..++
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~-----~~~~q~~~~~g~~~~lk~~l~------------la~~q- 605 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA-----EYGVQQTLDEGKLLRLKAGLH------------LALSQ- 605 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh-----hhhHhhhhhhhhhhhhhcccc------------cCccc-
Confidence 1110 00 01134666777777776631 11111111 11111110 11011
Q ss_pred CcccccCcchhHHHHHHHHHHhh-hhhHHH-hcCchhhHHhhhhcchhhHH---HHHHHHHHHHHhCCCchH---HHHHH
Q psy9584 235 GDMFIWMPKEHLYVVVYLVTVIG-HLKFFG-VTGTAGTEVERLSQERELWT---FANLNLAIVYLRGKREGD---FAALL 306 (466)
Q Consensus 235 ~~~f~WLpk~~l~aLvyl~tv~~-~lk~Fl-v~G~~~~eAl~~~~~~~~~~---~~~lNlai~Yl~~~~~~e---~~~~l 306 (466)
|+..+-.-.|+.+-+. +.|.|. ..-.++ .....+...+|. -+.+-.|..++..+.+.+ +..-+
T Consensus 606 -------~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~--s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 606 -------PTDAISTSRYLSSLVASQLKSAGSELKLPS--STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred -------ccccchhhHHHHHHHHhhhhhcccccccCc--ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 1111112233333211 111100 000000 000112233333 366777888888664433 33333
Q ss_pred hhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHH--
Q psy9584 307 ERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMN-- 384 (466)
Q Consensus 307 ~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~-- 384 (466)
..+.| +=+.++|..|.....+++..|||+.|-.++-+.. .+...++ -+|.+++..|+.+-|++
T Consensus 677 ~~~~~---------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~s~~-----Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 677 SKIDP---------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVPSMT-----ALAELLLELGSPRLAEKRS 741 (799)
T ss_pred Hhcch---------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcHHHH-----HHHHHHHHhCCcchHHHHH
Confidence 32332 2266678889988999999999999999998543 3444444 48999999999999999
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q psy9584 385 MVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMHC 430 (466)
Q Consensus 385 ~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~ 430 (466)
|++.|+.+=---|+ .|= -|-+++++.||.++|-|-|+--.
T Consensus 742 ~L~dalr~dp~n~e----aW~--~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 742 LLSDALRLDPLNHE----AWY--YLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHhhCCCCHH----HHH--HHHHHHHHccchHHHHHHHHHHH
Confidence 99999988666665 453 47799999999999988776543
No 32
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.00052 Score=68.75 Aligned_cols=198 Identities=16% Similarity=0.061 Sum_probs=131.8
Q ss_pred cchhHHHhhc--CCC-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-CC
Q psy9584 2 CIQCLQAVFN--FKP-PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQ-LL 77 (466)
Q Consensus 2 ai~CLeAvl~--~~~-~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~-~~ 77 (466)
|..|++.+.. .+. .|.--|++..+.|.++ ... |+++|..++++|..+..... -++.-.....-+|++|... |+
T Consensus 54 A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d 130 (282)
T PF14938_consen 54 AAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGD 130 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCC
Confidence 4556643332 223 5666778888877774 333 99999999999999766644 5566677888999999999 89
Q ss_pred ccchhHHHHHHHHhhc--hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChH--H-HHHHHHHHHHHHhc
Q psy9584 78 SNLSKPILRRAIELSQ--HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQY--T-RVLFLLSRCMLLLI 152 (466)
Q Consensus 78 ~~~ak~~l~k~i~~s~--~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~--~-~~lf~ls~~~~ll~ 152 (466)
+..+...+.+++++.. +.+......+.++|.++...|+|..|++.++..+....+.+-.. + +.+|.. ++++|.
T Consensus 131 ~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a--~l~~L~ 208 (282)
T PF14938_consen 131 YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA--ILCHLA 208 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH--HHHHHH
Confidence 9999999999999987 66778888888999999999999999999999887655444322 2 223333 334554
Q ss_pred ccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q psy9584 153 DKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQL 211 (466)
Q Consensus 153 ~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqL 211 (466)
..|.-...+++.+..++.+++.+.. --++. -++......||+..-...+++.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~----E~~~~---~~l~~A~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSR----EYKFL---EDLLEAYEEGDVEAFTEAVAEY 260 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSH----HHHHH---HHHHHHHHTT-CCCHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcH----HHHHH---HHHHHHHHhCCHHHHHHHHHHH
Confidence 4444445677888777777665553 22233 3345555677765555544433
No 33
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0046 Score=61.96 Aligned_cols=192 Identities=16% Similarity=0.102 Sum_probs=129.7
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhh
Q psy9584 13 KPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELS 92 (466)
Q Consensus 13 ~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s 92 (466)
+.|+--+|.-...=|...|.--++.++|-..+++|-.+-.+.+ ....-..++...+.+|.+. ++..+...+++++++.
T Consensus 27 ~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 27 KKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY 104 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 3456677777777777789999999999999999988777644 4445556677788888777 5667888999999998
Q ss_pred c--hhhhhHHHHHHHHHHHhccc-ccHHHHHHHHHhHHHHHHHhcChHH--HHHHHHHHHHHHhcccCccHHHHHHHHHh
Q psy9584 93 Q--HSIYWHCRLIFQLAQIHAGE-KDYELASSLLGVGVDYANISNAQYT--RVLFLLSRCMLLLIDKKVNDAVQLLTQAG 167 (466)
Q Consensus 93 ~--~~~~W~~~~~fqLA~i~~~~-~D~~~A~~~L~~g~~~A~~~~d~~~--~~lf~ls~~~~ll~~~~~~~v~~al~~~~ 167 (466)
. +.+.--.+.+..+|.++..+ ||++.|++.++.++++....|++.. .++-.++.+.+.+. +. +.++....
T Consensus 105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--~y---~~A~~~~e 179 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--RY---EEAIEIYE 179 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---H---HHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--CH---HHHHHHHH
Confidence 6 55566678888999999999 9999999999999999999997653 44444444443333 22 33333333
Q ss_pred hHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy9584 168 YQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQ 212 (466)
Q Consensus 168 ~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq 212 (466)
++.......+.-+-..+-+++.. +.|+|..||+-.++..+...+
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a-~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKA-ILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHH-HHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHhhcccccchhHHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Confidence 34433222222233455555533 667888999877777775553
No 34
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.80 E-value=0.00022 Score=56.81 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=62.2
Q ss_pred HHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy9584 361 LTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHV-QLWASAILKDLYKILNDPVRENEALQMHCNFSQ 434 (466)
Q Consensus 361 l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~-qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~s~ 434 (466)
.++.++..+|.+|...|++++|+++...|+++.+..+|.+. ..++..-+..+|...||+++|.++++.-..+.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 46678889999999999999999999999999888887765 488899999999999999999888877665543
No 35
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.79 E-value=0.0044 Score=62.81 Aligned_cols=295 Identities=11% Similarity=-0.037 Sum_probs=160.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHH
Q psy9584 26 LGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQ 105 (466)
Q Consensus 26 la~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fq 105 (466)
+-.++...++++++|..++++++.. .|... .+... +..+...|.+........+.++.......-.....+.
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDD---YPRDL----LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCcH----HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 4455667889999999999998764 23222 22222 3333333332222222333333222111112233445
Q ss_pred HHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHH
Q psy9584 106 LAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKV 185 (466)
Q Consensus 106 LA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~ 185 (466)
+|.++...|++..|.+.++.+++.+.. ++ .+....++++......++....+.++-..++. .+ ......
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~--~~----~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---~~--~~~~~~ 188 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPD--DA----WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---SS--MLRGHN 188 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--Cc----HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---Cc--chhHHH
Confidence 688888999999999999999887653 22 22333455555555556556667776554443 11 012222
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhc
Q psy9584 186 FFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVT 265 (466)
Q Consensus 186 ~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~ 265 (466)
+.. ..-+++..|+...+...+++.....-. .+. +
T Consensus 189 ~~~--la~~~~~~G~~~~A~~~~~~~~~~~~~--~~~------------------~------------------------ 222 (355)
T cd05804 189 WWH--LALFYLERGDYEAALAIYDTHIAPSAE--SDP------------------A------------------------ 222 (355)
T ss_pred HHH--HHHHHHHCCCHHHHHHHHHHHhccccC--CCh------------------H------------------------
Confidence 322 233477889998888888887433211 110 0
Q ss_pred CchhhHHhhhhcchhhHHHHHHHHHHHHHhCC-Cc-h-HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHH
Q psy9584 266 GTAGTEVERLSQERELWTFANLNLAIVYLRGK-RE-G-DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEA 342 (466)
Q Consensus 266 G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~-~~-~-e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eA 342 (466)
...+....+...+...+ .. . ....+.+...+ ..+.+.... ....++.+. ..+++.++|
T Consensus 223 ---------------~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~~a~~~--~~~~~~~~a 283 (355)
T cd05804 223 ---------------LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAF-NDLHAALAL--AGAGDKDAL 283 (355)
T ss_pred ---------------HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchH-HHHHHHHHH--hcCCCHHHH
Confidence 00001111122222222 11 1 12112211111 101111111 112233333 667778888
Q ss_pred HHHHHHHHHhhhh---hhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHH
Q psy9584 343 KRYLRETLKMANA---EDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLW 404 (466)
Q Consensus 343 k~~lre~lk~a~~---~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw 404 (466)
.+.+......+.+ .+.........++.+..++..||.++|...+.+++.+|..++..+.|.-
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~ 348 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRD 348 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 8888777777777 7777777777788888888888888888888888888888888777754
No 36
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.75 E-value=0.02 Score=58.06 Aligned_cols=231 Identities=12% Similarity=0.058 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHH
Q psy9584 60 VKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTR 139 (466)
Q Consensus 60 ~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~ 139 (466)
....+.+.+|.++...|.+..+...++++++...+. ......+|.++...|+++.|+..++++.+......+..+.
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 335677889999999999999999999999988765 2334567999999999999999999998876642233333
Q ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHH-HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q psy9584 140 VLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVF-FLVLQVCHYLMAGQVKSVKPCLKQLQQSILTI 218 (466)
Q Consensus 140 ~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~-~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i 218 (466)
....++.+ ++...+.++....+.++ ... .|. ...+... -....+.....+|.+ ..........+..
T Consensus 188 ~~~~la~~--~~~~G~~~~A~~~~~~~---~~~---~~~-~~~~~~~~~~~~~l~~~~~~g~~----~~~~~w~~~~~~~ 254 (355)
T cd05804 188 NWWHLALF--YLERGDYEAALAIYDTH---IAP---SAE-SDPALDLLDAASLLWRLELAGHV----DVGDRWEDLADYA 254 (355)
T ss_pred HHHHHHHH--HHHCCCHHHHHHHHHHH---hcc---ccC-CChHHHHhhHHHHHHHHHhcCCC----ChHHHHHHHHHHH
Confidence 33334333 33333333333333333 110 110 1122111 111222222222221 1111111111000
Q ss_pred cCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCC
Q psy9584 219 MQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKR 298 (466)
Q Consensus 219 ~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~ 298 (466)
. -..+.....+..++.+.+++..++
T Consensus 255 -~------------------------------------------------------~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 255 -A------------------------------------------------------WHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred -H------------------------------------------------------hhcCcccchHHHHHHHHHHhcCCC
Confidence 0 011224455777888888888887
Q ss_pred chHHHHHHhhhCCCccc---cccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHH
Q psy9584 299 EGDFAALLERINPETLT---SHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLT 362 (466)
Q Consensus 299 ~~e~~~~l~~i~~~~~~---~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~ 362 (466)
..+...+++.+.+.... .........+..+.|+..+.+|++.+|.+.|++++..+...+-++--
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq 346 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQ 346 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 77788888777654332 33444567777889999999999999999999999988877766543
No 37
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.72 E-value=0.00026 Score=56.35 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=58.3
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhh-hHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhc
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLN-RLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASK 395 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~-~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK 395 (466)
..-|...+.+++|++|..++++++++...-+.. ..++.++.-||.+|...|++++|+++...|+++.+|
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 444555589999999999999999995555544 457999999999999999999999999999999876
No 38
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.67 E-value=0.00048 Score=57.87 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=80.3
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhh---HHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNR---LTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~---l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~ql 403 (466)
|+.-+.+...++|.+|.+.|+.....+..++... -.+.+++.++.+....|+.++|.+.++.|+++|++..|....-
T Consensus 2 ~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~ 81 (94)
T PF12862_consen 2 YLRYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLA 81 (94)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 5666778899999999999999999999998866 6777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy9584 404 WASAILKDLYKI 415 (466)
Q Consensus 404 w~~~lL~~ly~~ 415 (466)
++...+..+.+.
T Consensus 82 ~al~~~~~l~~~ 93 (94)
T PF12862_consen 82 YALSWLANLLKK 93 (94)
T ss_pred HHHHHHHHHhhc
Confidence 998888887653
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.66 E-value=0.1 Score=54.91 Aligned_cols=302 Identities=13% Similarity=0.103 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhH
Q psy9584 21 RTHLQLGNILLTH-TKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWH 99 (466)
Q Consensus 21 ~~rLrla~lL~~~-T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~ 99 (466)
|.+-.+-+-+... ..|.+.|+..+.++-. ..|...-.+-+.|+.-.+.|++..+...+.++.+...+. .+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~-------~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~-~~~ 154 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNAD-------HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADND-QLP 154 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-hHH
Confidence 4444444333344 4899999988888533 222233334455677699999999999999998877654 222
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccch
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQ 179 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~ 179 (466)
. .+..+.++..+||++.|+..++...+.+- ....++-.+.++++.. .+.+ .++.....+.+.-...+..
T Consensus 155 ~--~l~~a~l~l~~g~~~~Al~~l~~~~~~~P----~~~~al~ll~~~~~~~--gdw~---~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 155 V--EITRVRIQLARNENHAARHGVDKLLEVAP----RHPEVLRLAEQAYIRT--GAWS---SLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred H--HHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHH--HhHH---HHHHHHHHHHHcCCCCHHH
Confidence 2 22348999999999999999888766553 2234444444444322 2222 2333333333221111111
Q ss_pred HhhHH--HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhh
Q psy9584 180 KEYLK--VFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIG 257 (466)
Q Consensus 180 ~e~L~--~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~ 257 (466)
...++ .|...+... .+ .+......+-.+ . +|++
T Consensus 224 ~~~l~~~a~~~l~~~~----~~-~~~~~~l~~~w~----~-----------------------lp~~------------- 258 (398)
T PRK10747 224 RAMLEQQAWIGLMDQA----MA-DQGSEGLKRWWK----N-----------------------QSRK------------- 258 (398)
T ss_pred HHHHHHHHHHHHHHHH----HH-hcCHHHHHHHHH----h-----------------------CCHH-------------
Confidence 12222 222222211 00 011111111111 1 1110
Q ss_pred hhhHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhh
Q psy9584 258 HLKFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337 (466)
Q Consensus 258 ~lk~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~ 337 (466)
.++ ..-+...+|-.+...|...+....+++.-.. + .+..+ ...|.. ...+
T Consensus 259 --------------------~~~-~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~-~~~~l--~~l~~~----l~~~ 308 (398)
T PRK10747 259 --------------------TRH-QVALQVAMAEHLIECDDHDTAQQIILDGLKR--Q-YDERL--VLLIPR----LKTN 308 (398)
T ss_pred --------------------HhC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C-CCHHH--HHHHhh----ccCC
Confidence 011 1123344677777777555444444222211 1 11111 111322 3458
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcC
Q psy9584 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILN 417 (466)
Q Consensus 338 ~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g 417 (466)
+++++.+.+++.++...+. .. .++.+|.++++.+++.+|++....++.. -||... ...|.+++...|
T Consensus 309 ~~~~al~~~e~~lk~~P~~--~~----l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~----~~~La~~~~~~g 375 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDT--PL----LWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYD----YAWLADALDRLH 375 (398)
T ss_pred ChHHHHHHHHHHHhhCCCC--HH----HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH----HHHHHHHHHHcC
Confidence 9999999999998744433 22 3457899999999999999999999876 366533 346889999999
Q ss_pred CchHHHHHHHHH
Q psy9584 418 DPVRENEALQMH 429 (466)
Q Consensus 418 ~~~~~~e~~~~~ 429 (466)
+++.|.+.|..-
T Consensus 376 ~~~~A~~~~~~~ 387 (398)
T PRK10747 376 KPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHH
Confidence 999998877743
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.65 E-value=0.018 Score=67.38 Aligned_cols=101 Identities=9% Similarity=0.034 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCCchH---HHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhh
Q psy9584 284 FANLNLAIVYLRGKREGD---FAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNR 360 (466)
Q Consensus 284 ~~~lNlai~Yl~~~~~~e---~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~ 360 (466)
-+..|+|.++.+.++..+ ++...-.+.|... . +.+.-|......|++.+|...++++++.....
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-~--------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---- 676 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-N--------YQAALGYALWDSGDIAQSREMLERAHKGLPDD---- 676 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-H--------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----
Confidence 355788888888774432 4444444555322 1 11222333366788888888888888864422
Q ss_pred HHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh
Q psy9584 361 LTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 361 l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~ 399 (466)
...+..+|.++...|++++|+.....+..+.-...++
T Consensus 677 --~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 677 --PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 2356688888888888888888888888887655554
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=97.57 E-value=0.019 Score=62.93 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhC---------CccchhHHHHHHHHhhchhhhhHHHHHHH
Q psy9584 35 KNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQL---------LSNLSKPILRRAIELSQHSIYWHCRLIFQ 105 (466)
Q Consensus 35 ~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~---------~~~~ak~~l~k~i~~s~~~~~W~~~~~fq 105 (466)
++.++|..++++|+.+ -|.+ ..++..||.+|...+ .++.+...+++++++..+.+ ..++.
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~----~a~~~ 343 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNS----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP----QALGL 343 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCcc----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH----HHHHH
Confidence 4577899999999765 3334 346778888887543 25668888888888876442 23446
Q ss_pred HHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 106 LAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 106 LA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
+|.++...|+++.|+..++.++++.
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 7888899999999999998887764
No 42
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.48 E-value=0.0018 Score=58.21 Aligned_cols=112 Identities=19% Similarity=0.098 Sum_probs=88.0
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHH
Q psy9584 5 CLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPI 84 (466)
Q Consensus 5 CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~ 84 (466)
.++.+.+..+....-..++|.+|++++ ...+.++|+..|++++.-. + =..++--+...||+++...|+++.+...
T Consensus 33 ~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~---~-d~~l~~~a~l~LA~~~~~~~~~d~Al~~ 107 (145)
T PF09976_consen 33 AAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANA---P-DPELKPLARLRLARILLQQGQYDEALAT 107 (145)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhC---C-CHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 355566666655577899999999976 5588999999999976632 1 3467888888999999999999999988
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhH
Q psy9584 85 LRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVG 126 (466)
Q Consensus 85 l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g 126 (466)
|.. -....|...+...+|.|+...||++.|...++++
T Consensus 108 L~~-----~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 108 LQQ-----IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHh-----ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 855 1233566667778999999999999999998875
No 43
>KOG1941|consensus
Probab=97.43 E-value=0.046 Score=56.75 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=92.1
Q ss_pred hhhcHHHHHHHHHHHHHhhhhhhh----hhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHH
Q psy9584 335 FQARYNEAKRYLRETLKMANAEDL----NRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILK 410 (466)
Q Consensus 335 ~~~~~~eAk~~lre~lk~a~~~~l----~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~ 410 (466)
.-..|.+|.-|.+++..+++.-++ ..-.++++.-|+-.+--+|...-|++..+.|+++|=..+|..++--.-..+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 446789999999999999998875 4456677999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHHHHH
Q psy9584 411 DLYKILNDPVRENEALQMHCNFSQML 436 (466)
Q Consensus 411 ~ly~~~g~~~~~~e~~~~~~~~s~~l 436 (466)
||||..||.+++..-|+.-+.++.++
T Consensus 254 DIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 99999999999999999888888776
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.40 E-value=0.0042 Score=57.05 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=96.9
Q ss_pred HHhcCchhh------HHhhhhcchhhHHHHHHHHHHHHHhCCCch---HHHHHHhhhCCCccccccchhhHHHHHHHhHH
Q psy9584 262 FGVTGTAGT------EVERLSQERELWTFANLNLAIVYLRGKREG---DFAALLERINPETLTSHSHSLRAAAYYVQGLQ 332 (466)
Q Consensus 262 Flv~G~~~~------eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~---e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~ 332 (466)
+...|++.. ++++. +|+ ...+..++|.+|...++.. ++++..-++.|.. ..+.+..|..
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~--~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~ 108 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEH--DPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------GDVLNNYGTF 108 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHh--Ccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHH
Confidence 556666654 24333 222 2346677899999977433 2444443444421 1122334555
Q ss_pred HhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy9584 333 SFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDL 412 (466)
Q Consensus 333 ~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~l 412 (466)
.+.+|++++|.++++++++...... ....+..+|.++...|++++|.+....++......++ +...+..+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~la~~ 178 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE------SLLELAEL 178 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH------HHHHHHHH
Confidence 5789999999999999987432211 2334567899999999999999999998876543222 33467889
Q ss_pred HHHcCCchHHHHHHHHHHH
Q psy9584 413 YKILNDPVRENEALQMHCN 431 (466)
Q Consensus 413 y~~~g~~~~~~e~~~~~~~ 431 (466)
|...|++++|.++++....
T Consensus 179 ~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999887776544
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.39 E-value=0.058 Score=56.84 Aligned_cols=282 Identities=12% Similarity=0.101 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHH
Q psy9584 23 HLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRL 102 (466)
Q Consensus 23 rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~ 102 (466)
.+-.|.+ .....|.+.|..+|+++... +.+-+....-..++++...|++..+...+++..+..-+.+ ..
T Consensus 121 ~llaA~a-a~~~g~~~~A~~~l~~a~~~------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~ 189 (409)
T TIGR00540 121 LIKAAEA-AQQRGDEARANQHLEEAAEL------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK----EV 189 (409)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHh------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HH
Confidence 3333444 45568999999999997432 3333333444569999999999999999999999886553 34
Q ss_pred HHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccc-hHh
Q psy9584 103 IFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQY-QKE 181 (466)
Q Consensus 103 ~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~-~~e 181 (466)
+..++.++...||++.|.+.++.-.+.....+.....+-...... ++.. ...++.......+++. .|. ++.
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~--~l~~---~~~~~~~~~L~~~~~~---~p~~~~~ 261 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG--LLDE---AMADEGIDGLLNWWKN---QPRHRRH 261 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--HHHH---HHHhcCHHHHHHHHHH---CCHHHhC
Confidence 557889999999999999998887766321111111111111111 1100 0000111222233332 331 112
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhH
Q psy9584 182 YLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKF 261 (466)
Q Consensus 182 ~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~ 261 (466)
...+++...+ .+...|+...+...++..- +. .|+
T Consensus 262 ~~~l~~~~a~--~l~~~g~~~~A~~~l~~~l---~~--~pd--------------------------------------- 295 (409)
T TIGR00540 262 NIALKIALAE--HLIDCDDHDSAQEIIFDGL---KK--LGD--------------------------------------- 295 (409)
T ss_pred CHHHHHHHHH--HHHHCCChHHHHHHHHHHH---hh--CCC---------------------------------------
Confidence 2233333222 4456677666665554332 11 222
Q ss_pred HHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHHH---hhhCCCccccccchhhHHHHHHHhHHHhhhhc
Q psy9584 262 FGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGDFAALL---ERINPETLTSHSHSLRAAAYYVQGLQSFFQAR 338 (466)
Q Consensus 262 Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l---~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~ 338 (466)
++.. .+. +-....++..+...+..+.+ -+..|. +.. +.+...-|-..+.+++
T Consensus 296 ----------------~~~~-~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-----~~~--~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 296 ----------------DRAI-SLP-LCLPIPRLKPEDNEKLEKLIEKQAKNVDD-----KPK--CCINRALGQLLMKHGE 350 (409)
T ss_pred ----------------cccc-hhH-HHHHhhhcCCCChHHHHHHHHHHHHhCCC-----Chh--HHHHHHHHHHHHHccc
Confidence 1100 011 11122233332222222222 222331 110 1111223444488999
Q ss_pred HHHHHHHHHH--HHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhH
Q psy9584 339 YNEAKRYLRE--TLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHV 401 (466)
Q Consensus 339 ~~eAk~~lre--~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~ 401 (466)
+.+|+++++. +++... +... +..+|.++...|+.++|.++-+.|+.++--++|.++
T Consensus 351 ~~~A~~~le~a~a~~~~p--~~~~-----~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 408 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQL--DAND-----LAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQDNIP 408 (409)
T ss_pred HHHHHHHHHHhHHhhcCC--CHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccCC
Confidence 9999999995 555322 2211 226799999999999999999999999999888653
No 46
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.39 E-value=0.086 Score=59.29 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHh
Q psy9584 285 ANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSC 364 (466)
Q Consensus 285 ~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~ 364 (466)
+++.+...|.+.|+..+..+++++....++..... +-..++.|. ...|..++|++++++..+.. ...-...
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~~~ll~a~--~~~g~~~~a~~~f~~m~~~~----g~~p~~~ 463 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV---TFLAVLSAC--RYSGLSEQGWEIFQSMSENH----RIKPRAM 463 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHH--hcCCcHHHHHHHHHHHHHhc----CCCCCcc
Confidence 34455556667665555555554443332211100 101122333 35778888888887765421 1112234
Q ss_pred HHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q psy9584 365 SLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 365 ~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~ 428 (466)
.+..|...|-+.|+.++|.++... ....||. ..|.+-+ ..++..|+.+.+.++.+.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~----~~~~p~~--~~~~~Ll--~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRR----APFKPTV--NMWAALL--TACRIHKNLELGRLAAEK 519 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHH----CCCCCCH--HHHHHHH--HHHHHcCCcHHHHHHHHH
Confidence 577888899999999999988753 2345665 3465533 568889999888776554
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.39 E-value=0.0015 Score=64.75 Aligned_cols=256 Identities=21% Similarity=0.172 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhCCccchhHHHHHHHHhh---chhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHH
Q psy9584 65 ASVLAELYETQLLSNLSKPILRRAIELS---QHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVL 141 (466)
Q Consensus 65 ~slLa~~y~~~~~~~~ak~~l~k~i~~s---~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~l 141 (466)
...+|+++.+.|++..|..+|++++... .+..+| ..+|.+....+|++.|++.+++.+..-...- ..+
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~-----~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~----~~~ 81 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYW-----RLLADLAWSLGDYDEAIEAYEKLLASDKANP----QDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccc----ccc
Confidence 3466999999999999999998766554 233344 4588888899999999999998876543211 111
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q psy9584 142 FLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQP 221 (466)
Q Consensus 142 f~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~ 221 (466)
-++.. ++...+.. .++..+...++. .+.| ..+...+.+ +...|+...+...++++.... .
T Consensus 82 ~~l~~---l~~~~~~~---~A~~~~~~~~~~-~~~~------~~l~~~l~~--~~~~~~~~~~~~~l~~~~~~~---~-- 141 (280)
T PF13429_consen 82 ERLIQ---LLQDGDPE---EALKLAEKAYER-DGDP------RYLLSALQL--YYRLGDYDEAEELLEKLEELP---A-- 141 (280)
T ss_dssp -------------------------------------------------H---HHHTT-HHHHHHHHHHHHH-T------
T ss_pred ccccc---cccccccc---cccccccccccc-cccc------chhhHHHHH--HHHHhHHHHHHHHHHHHHhcc---C--
Confidence 11111 12222222 233333333433 1221 222222333 345667777777776654211 0
Q ss_pred CCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCc--
Q psy9584 222 TWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKRE-- 299 (466)
Q Consensus 222 ~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~-- 299 (466)
.........-+|.+|.+.|+.
T Consensus 142 ---------------------------------------------------------~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 142 ---------------------------------------------------------APDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp -----------------------------------------------------------T-HHHHHHHHHHHHHCCHHHH
T ss_pred ---------------------------------------------------------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 112233455668888887733
Q ss_pred h-HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCC
Q psy9584 300 G-DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378 (466)
Q Consensus 300 ~-e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~ 378 (466)
+ ++++..-+++|.. ..++.. ++..+ .-+|++.++++.+....+.. .++..+.. .+|..++.+|+
T Consensus 165 A~~~~~~al~~~P~~-----~~~~~~--l~~~l--i~~~~~~~~~~~l~~~~~~~--~~~~~~~~----~la~~~~~lg~ 229 (280)
T PF13429_consen 165 ALRDYRKALELDPDD-----PDARNA--LAWLL--IDMGDYDEAREALKRLLKAA--PDDPDLWD----ALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHHHHHH-TT------HHHHHH--HHHHH--CTTCHHHHHHHHHHHHHHH---HTSCCHCH----HHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCC-----HHHHHH--HHHHH--HHCCChHHHHHHHHHHHHHC--cCHHHHHH----HHHHHhccccc
Confidence 2 3555555566631 112121 22222 56888999888888877765 33344433 67899999999
Q ss_pred hHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 379 HRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 379 ~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
+++|......+... .-.|+.++ ..+.+++...|++++|.+.+.
T Consensus 230 ~~~Al~~~~~~~~~--~p~d~~~~----~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 230 YEEALEYLEKALKL--NPDDPLWL----LAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHH--STT-HHHH----HHHHHHHT-------------
T ss_pred cccccccccccccc--cccccccc----ccccccccccccccccccccc
Confidence 99999999886542 33344222 367799999999999876543
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=97.34 E-value=0.041 Score=60.44 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=83.8
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLT--------HTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYE 73 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~--------~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~ 73 (466)
|+.+++.++...|.. +.++..+|.+++. ...+.++|..++++|+.+-.. . .+++..+|.++.
T Consensus 280 A~~~~~~Al~ldP~~---a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---~----~~a~~~lg~~~~ 349 (553)
T PRK12370 280 ALKLLTQCVNMSPNS---IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---N----PQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC---C----HHHHHHHHHHHH
Confidence 567777777655521 2344445544322 233478999999999876222 2 357788999999
Q ss_pred HhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 74 TQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 74 ~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
..|+++.|...+++++++.-+.+. .++.+|.++...|+++.|++.++.++.+.
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999865532 34567999999999999999999887764
No 49
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.33 E-value=0.0029 Score=56.85 Aligned_cols=92 Identities=26% Similarity=0.315 Sum_probs=76.0
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~ 406 (466)
+.-|-..+.+|++++|+..|++.+..+ ....+...+.+-|+.+++..|++++|.+.+.. +++..+.-...
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~ 121 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAA 121 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHH
Confidence 334555589999999999999999855 34456677788899999999999999999844 56666677788
Q ss_pred HHHHHHHHHcCCchHHHHHHHH
Q psy9584 407 AILKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 407 ~lL~~ly~~~g~~~~~~e~~~~ 428 (466)
.++-|+|...||+++|...|+.
T Consensus 122 ~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 122 ELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999988863
No 50
>KOG1173|consensus
Probab=97.30 E-value=0.049 Score=59.17 Aligned_cols=277 Identities=18% Similarity=0.250 Sum_probs=173.3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccch
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQ 179 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~ 179 (466)
-.++-..|+.+...++|....++.+...+..-=+.+- +.+-|+ ++ ..-.+. ..+..-.+++++..+..
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~---~~~~ia-~l--~el~~~---n~Lf~lsh~LV~~yP~~--- 311 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC---LPLHIA-CL--YELGKS---NKLFLLSHKLVDLYPSK--- 311 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch---HHHHHH-HH--HHhccc---chHHHHHHHHHHhCCCC---
Confidence 3455567888888888888888887776654322221 111111 11 111111 34466678888776554
Q ss_pred HhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhh
Q psy9584 180 KEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHL 259 (466)
Q Consensus 180 ~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~l 259 (466)
.+..|.. -|+|++.|....+|.++..--..+.+. +| -|+.=.|.|+.
T Consensus 312 --a~sW~aV---g~YYl~i~k~seARry~SKat~lD~~f-gp-----------------aWl~fghsfa~---------- 358 (611)
T KOG1173|consen 312 --ALSWFAV---GCYYLMIGKYSEARRYFSKATTLDPTF-GP-----------------AWLAFGHSFAG---------- 358 (611)
T ss_pred --CcchhhH---HHHHHHhcCcHHHHHHHHHHhhcCccc-cH-----------------HHHHHhHHhhh----------
Confidence 5777777 899999999999999986554333221 22 34443333332
Q ss_pred hHHHhcCchhh--HHhhhhcch--hhHHHHHHHHHHHHHhCCC--ch-HHHHHHhhhCCC-ccccccchhhHHHHHHHhH
Q psy9584 260 KFFGVTGTAGT--EVERLSQER--ELWTFANLNLAIVYLRGKR--EG-DFAALLERINPE-TLTSHSHSLRAAAYYVQGL 331 (466)
Q Consensus 260 k~Flv~G~~~~--eAl~~~~~~--~~~~~~~lNlai~Yl~~~~--~~-e~~~~l~~i~~~-~~~~~~~~L~a~~~yv~~~ 331 (466)
+|-..| -|..++ .+ ...-.=.+.+|+=|.+++. -+ .|+.-+-.|.|. -+. -+-+ |.
T Consensus 359 -----e~EhdQAmaaY~tA-arl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv--~~El--------gv 422 (611)
T KOG1173|consen 359 -----EGEHDQAMAAYFTA-ARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV--LHEL--------GV 422 (611)
T ss_pred -----cchHHHHHHHHHHH-HHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh--hhhh--------hh
Confidence 222222 111111 00 0001124677888888762 23 366555556664 221 1112 34
Q ss_pred HHhhhhcHHHHHHHHHHHHHhhhhhhhhhH-HHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHH
Q psy9584 332 QSFFQARYNEAKRYLRETLKMANAEDLNRL-TSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILK 410 (466)
Q Consensus 332 ~~~~~~~~~eAk~~lre~lk~a~~~~l~~l-~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~ 410 (466)
.+|..+.|.+|.++++.+|.-.++.+.... .--.++.|||++-.++.+++|.+....|+-+..|..+. ..-+.
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~------~asig 496 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST------HASIG 496 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH------HHHHH
Confidence 457889999999999999976666665444 45568899999999999999999999999999988884 34455
Q ss_pred HHHHHcCCchHHHHHHHHHH------HHHHHHHHHHhhh
Q psy9584 411 DLYKILNDPVRENEALQMHC------NFSQMLLKDHFQS 443 (466)
Q Consensus 411 ~ly~~~g~~~~~~e~~~~~~------~~s~~l~~~~~~~ 443 (466)
=+|...|+.+.|-++++--. .+...+++.-++.
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 68999999999999876532 2555565554444
No 51
>KOG2003|consensus
Probab=97.28 E-value=0.0075 Score=63.82 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 57 FDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 57 ~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
..|+.|.-.+.||.-|.-..-++.+.+...-.+.- ....=.-++-...++||..+++|..|++++.++++-.-.
T Consensus 196 nldltfsvl~nlaqqy~~ndm~~ealntyeiivkn--kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps 269 (840)
T KOG2003|consen 196 NLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKN--KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS 269 (840)
T ss_pred cccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcc--cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc
Confidence 35788888888888776554444343322211110 000111223335799999999999999999998876554
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.22 E-value=0.11 Score=54.64 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHH
Q psy9584 25 QLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF 104 (466)
Q Consensus 25 rla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~f 104 (466)
-++........|.+.|..+|+++... ..+-......+.++++...|+++.+...+++..+..-+.+ ..+.
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ 191 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAEL------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP----EVLR 191 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHH
Confidence 34455557788999999999998432 2233333444559999999999999999999999886552 3344
Q ss_pred HHHHHhcccccHHHHHHHHHhHHHH
Q psy9584 105 QLAQIHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 105 qLA~i~~~~~D~~~A~~~L~~g~~~ 129 (466)
.++.++...||++.|++.|....+.
T Consensus 192 ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 192 LAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 5688888999999999888876654
No 53
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.22 E-value=0.059 Score=63.27 Aligned_cols=269 Identities=10% Similarity=-0.057 Sum_probs=154.4
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhch
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQH 94 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~ 94 (466)
|+...+.++..+|.+|.. .++++|..++.++.... +. ......+|..+...|.++.+...+++++.....
T Consensus 472 p~~~~~~a~~~LG~~l~~--~~~~eAi~a~~~Al~~~---Pd-----~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD--TLPGVALYAWLQAEQRQ---PD-----AWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred CCCCCHHHHHHHHHHHHh--CCcHHHHHHHHHHHHhC---Cc-----hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 343577899999999776 68888999999887643 21 123666788888999999999999997665433
Q ss_pred hhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhc
Q psy9584 95 SIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWT 174 (466)
Q Consensus 95 ~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~ 174 (466)
.+. .+.+|.++...||+..|.+.++...... .......+.+...+. ...+.+ .++....+.++.
T Consensus 542 ~~a-----~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~~~l~~~La~~l~--~~Gr~~---eAl~~~~~AL~l-- 605 (987)
T PRK09782 542 NED-----LLAAANTAQAAGNGAARDRWLQQAEQRG----LGDNALYWWLHAQRY--IPGQPE---LALNDLTRSLNI-- 605 (987)
T ss_pred cHH-----HHHHHHHHHHCCCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHH--hCCCHH---HHHHHHHHHHHh--
Confidence 333 3567888899999999999999987653 122222222211111 111222 222222222221
Q ss_pred cccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHH
Q psy9584 175 GSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVT 254 (466)
Q Consensus 175 g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~t 254 (466)
.|. -..++..- ..+...|+...+...+++.- ..
T Consensus 606 -~P~----~~a~~~LA--~~l~~lG~~deA~~~l~~AL---~l------------------------------------- 638 (987)
T PRK09782 606 -APS----ANAYVARA--TIYRQRHNVPAAVSDLRAAL---EL------------------------------------- 638 (987)
T ss_pred -CCC----HHHHHHHH--HHHHHCCCHHHHHHHHHHHH---Hh-------------------------------------
Confidence 121 11222211 22334555555555553321 11
Q ss_pred HhhhhhHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCchH---HHHHHhhhCCCccccccchhhHHHHHHHhH
Q psy9584 255 VIGHLKFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGD---FAALLERINPETLTSHSHSLRAAAYYVQGL 331 (466)
Q Consensus 255 v~~~lk~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e---~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~ 331 (466)
+|+.. .+..|+|.++...++..+ .++..-+++|.. + .+.+--|.
T Consensus 639 -----------------------~Pd~~-~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-~--------~a~~nLA~ 685 (987)
T PRK09782 639 -----------------------EPNNS-NYQAALGYALWDSGDIAQSREMLERAHKGLPDD-P--------ALIRQLAY 685 (987)
T ss_pred -----------------------CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-H--------HHHHHHHH
Confidence 22222 466788888888765443 344444455521 1 11233333
Q ss_pred HHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhc
Q psy9584 332 QSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASK 395 (466)
Q Consensus 332 ~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK 395 (466)
.....|++.+|..+++++++........ ....|++..+..+++.+.+-+..+..+.-+
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i------~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALI------TPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchh------hhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3477888888888888888776533222 225677777777777777766655554433
No 54
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.21 E-value=0.34 Score=55.99 Aligned_cols=121 Identities=14% Similarity=0.028 Sum_probs=75.1
Q ss_pred CchHHHHHHhhhCCC--ccccccchhhHH-HHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHH
Q psy9584 298 REGDFAALLERINPE--TLTSHSHSLRAA-AYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFL 374 (466)
Q Consensus 298 ~~~e~~~~l~~i~~~--~~~~~~~~L~a~-~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l 374 (466)
|+++..+..+.+..+ .+|.. ..++. -.| ..++++.+|...|++.++-.-+..-+-..-.-..-|-..++
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y--~~~a~aday------l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDY--ARRWAASAY------IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHH--HHHHHHHHH------HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 677766666666644 34332 22221 124 67999999999999998854321001000101123556677
Q ss_pred hcCChHHHHHhhHHHHHHh----------hcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 375 SLGNHRESMNMVTPAMQLA----------SKIPDVHVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 375 ~~~~~~ea~~~~~~a~~lA----------kK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
-.+++++|...+..-.+-. .|+|+..+. -.-.++...+...||..+|.+..+
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~-~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI-EGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8899999999888776521 135555444 445778888899999999977554
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.21 E-value=0.029 Score=53.66 Aligned_cols=186 Identities=13% Similarity=-0.074 Sum_probs=116.5
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhch
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQH 94 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~ 94 (466)
-+...+.+++..|..++ ...+.+.|...+++++..-.. ....-.+...+|.+|...|++..+...+++.++...+
T Consensus 28 ~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 28 VEEWPAEELYEEAKEAL-DSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred cccCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 36777888999998744 467899999999998664222 1234467899999999999999999999999998875
Q ss_pred hhhhHHHHHHHHHHHhcc--------cccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhc---------ccCcc
Q psy9584 95 SIYWHCRLIFQLAQIHAG--------EKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLI---------DKKVN 157 (466)
Q Consensus 95 ~~~W~~~~~fqLA~i~~~--------~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~---------~~~~~ 157 (466)
.+.... .++.++.++.. .|++..|++.++..++..-.... ..++++.+....-.+. .-..+
T Consensus 103 ~~~~~~-a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 103 HPDADY-AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY-APDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred CCchHH-HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 544322 23445555543 38999999999998765443221 1233333322211000 01112
Q ss_pred HHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy9584 158 DAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQ 212 (466)
Q Consensus 158 ~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq 212 (466)
....++.....+++..+..|.. -+.++. ...-+...|+...+.+++++|.
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~---~~a~~~--l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPAT---EEALAR--LVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcch---HHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Confidence 2344555666666654444322 233333 2334566888888888887775
No 56
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.0029 Score=48.42 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=69.4
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHH
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAI 408 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~l 408 (466)
.|...+.++++.+|..+++++++...... .++..+|.++...+++++|.+....++++..+.+ ++...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 73 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYN 73 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHH
Confidence 34444779999999999999998765443 5677899999999999999999999998876555 34456
Q ss_pred HHHHHHHcCCchHHHHHHHH
Q psy9584 409 LKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 409 L~~ly~~~g~~~~~~e~~~~ 428 (466)
+..+|...|+++++.+.+..
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 66788889999998766543
No 57
>KOG1941|consensus
Probab=97.10 E-value=0.39 Score=50.14 Aligned_cols=263 Identities=16% Similarity=0.098 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhh---hhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcC
Q psy9584 59 DVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSI---YWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNA 135 (466)
Q Consensus 59 d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~---~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d 135 (466)
+.+++|+--|++-+.+.-++....++=+-.+++--.-+ ... ...-++.+|..-+-|+.+++.++++.++|..++|
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq--~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ--VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch--hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 57889999999988887766655553333444432111 111 1122688888889999999999999999999999
Q ss_pred hHH--HHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q psy9584 136 QYT--RVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQ 213 (466)
Q Consensus 136 ~~~--~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~ 213 (466)
+-+ +|...|+.+ +...+. +...+-+-.....+..++-.|++..---++
T Consensus 158 ~~LElqvcv~Lgsl----------------------f~~l~D---~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~----- 207 (518)
T KOG1941|consen 158 AMLELQVCVSLGSL----------------------FAQLKD---YEKALFFPCKAAELVNSYGLKDWSLKYRAM----- 207 (518)
T ss_pred ceeeeehhhhHHHH----------------------HHHHHh---hhHHhhhhHhHHHHHHhcCcCchhHHHHHH-----
Confidence 732 333333333 332211 122222222323332222112111111111
Q ss_pred HHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh-HHhhh---hcchhhHHHHHHHH
Q psy9584 214 SILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT-EVERL---SQERELWTFANLNL 289 (466)
Q Consensus 214 ~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~-eAl~~---~~~~~~~~~~~lNl 289 (466)
--|.|.|--|.+-=++-...++ ||.++ .+|+-+.+.+-+-+
T Consensus 208 -----------------------------------~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 208 -----------------------------------SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred -----------------------------------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 1133333111111112222233 56665 66888899999999
Q ss_pred HHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHH-HHHhhhhhhhhhHHHhHHHH
Q psy9584 290 AIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRE-TLKMANAEDLNRLTSCSLVL 368 (466)
Q Consensus 290 ai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre-~lk~a~~~~l~~l~~~~l~l 368 (466)
|.||+..+.... + | .+|.+|....++ .-+|++-+.+.-..-|.-.+
T Consensus 253 aDIyR~~gd~e~---------------------a---f---------~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~ 299 (518)
T KOG1941|consen 253 ADIYRSRGDLER---------------------A---F---------RRYEQAMGTMASLGDRMGQVEALDGAAKCLETL 299 (518)
T ss_pred HHHHHhcccHhH---------------------H---H---------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999998662110 0 0 122222222221 12223322222222211111
Q ss_pred HHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHH
Q psy9584 369 LGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENE 424 (466)
Q Consensus 369 lg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e 424 (466)
= .....-| =+|.+.-+....+|+.|+...+.+-..-.|+.|||..|+-++-.+
T Consensus 300 r--~~~k~~~-Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 300 R--LQNKICN-CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRA 352 (518)
T ss_pred H--Hhhcccc-cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 0 0111112 457888889999999999999999999999999999997665433
No 58
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.08 E-value=0.0041 Score=47.52 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHH
Q psy9584 22 THLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCR 101 (466)
Q Consensus 22 ~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~ 101 (466)
+...+|..++. ..+.++|...+++++..... .. .+...+|.+|...|.+..+...+.+++......+ .
T Consensus 2 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 69 (100)
T cd00189 2 ALLNLGNLYYK-LGDYDEALEYYEKALELDPD---NA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----K 69 (100)
T ss_pred HHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCc---cH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----h
Confidence 45667777655 78899999999998765332 11 6778899999999999999999999988776443 4
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhHHH
Q psy9584 102 LIFQLAQIHAGEKDYELASSLLGVGVD 128 (466)
Q Consensus 102 ~~fqLA~i~~~~~D~~~A~~~L~~g~~ 128 (466)
..+.+|.++...||+..|...+..+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 566789999999999999888877654
No 59
>KOG1126|consensus
Probab=97.04 E-value=0.08 Score=58.33 Aligned_cols=277 Identities=17% Similarity=0.186 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCc--cchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcC
Q psy9584 58 DDVKFEAASVLAELYETQLLS--NLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNA 135 (466)
Q Consensus 58 ~d~K~~a~slLa~~y~~~~~~--~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d 135 (466)
.+..++..-.+|+.|...-.| ..|...+.+.-+.-.+. .| ++.|+|-.|...+||..| +++++.+++..-
T Consensus 313 ~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt-~w---vl~q~GrayFEl~~Y~~a----~~~F~~~r~~~p 384 (638)
T KOG1126|consen 313 ASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT-GW---VLSQLGRAYFELIEYDQA----ERIFSLVRRIEP 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-hH---HHHHHHHHHHHHHHHHHH----HHHHHHHHhhcc
Confidence 346677777888888776654 34555566521111233 35 567899999999999999 555566666554
Q ss_pred ---hHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy9584 136 ---QYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQ 212 (466)
Q Consensus 136 ---~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq 212 (466)
+.|+++. -.+-||++. .++=.-+..+++..+-.| ..++- +-=|++ ..++..++= |=++
T Consensus 385 ~rv~~meiyS---T~LWHLq~~-----v~Ls~Laq~Li~~~~~sP------esWca-~GNcfS-LQkdh~~Ai---k~f~ 445 (638)
T KOG1126|consen 385 YRVKGMEIYS---TTLWHLQDE-----VALSYLAQDLIDTDPNSP------ESWCA-LGNCFS-LQKDHDTAI---KCFK 445 (638)
T ss_pred ccccchhHHH---HHHHHHHhh-----HHHHHHHHHHHhhCCCCc------HHHHH-hcchhh-hhhHHHHHH---HHHH
Confidence 4455554 444455432 111122334444322222 11111 111111 122222222 2223
Q ss_pred HHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh--H-----------Hhhhhc-c
Q psy9584 213 QSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT--E-----------VERLSQ-E 278 (466)
Q Consensus 213 ~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~--e-----------Al~~~~-~ 278 (466)
..+|. .|+ ++|- |.++|.... | ||+..+ +
T Consensus 446 RAiQl--dp~--------------------------faYa---------yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 446 RAIQL--DPR--------------------------FAYA---------YTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred Hhhcc--CCc--------------------------cchh---------hhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 33333 332 1111 244555543 1 444321 2
Q ss_pred hhhHHHHHHHHHHHHHhCC-C-chH-HHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhh
Q psy9584 279 RELWTFANLNLAIVYLRGK-R-EGD-FAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANA 355 (466)
Q Consensus 279 ~~~~~~~~lNlai~Yl~~~-~-~~e-~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~ 355 (466)
.+ +..-||+||++++ . .++ ..+++-+|||... -|.. + .|..-..-++.++|++++.+|..+...
T Consensus 489 Yn----AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns-----vi~~---~-~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 489 YN----AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS-----VILC---H-IGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred hH----HHHhhhhheeccchhhHHHHHHHhhhcCCccch-----hHHh---h-hhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 22 4467899999977 3 355 7788888998422 1111 0 122226678889999999999998888
Q ss_pred hhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHH
Q psy9584 356 EDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVREN 423 (466)
Q Consensus 356 ~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~ 423 (466)
.-+.+... |.+.+..+++.||...+..-..++ ||. .-...++-++|+..|+.+.|.
T Consensus 556 n~l~~~~~------~~il~~~~~~~eal~~LEeLk~~v---P~e---s~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 556 NPLCKYHR------ASILFSLGRYVEALQELEELKELV---PQE---SSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred CchhHHHH------HHHHHhhcchHHHHHHHHHHHHhC---cch---HHHHHHHHHHHHHHccchHHH
Confidence 87777655 788889999999988887766554 663 667789999999999999983
No 60
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.99 E-value=1.3 Score=52.69 Aligned_cols=128 Identities=9% Similarity=-0.011 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHh
Q psy9584 285 ANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSC 364 (466)
Q Consensus 285 ~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~ 364 (466)
++..+...|.+.++-.+..++++++...++..... .--.++.++ ...|++++|.+.+++..+..-.- ...
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~---tynsLI~ay--~k~G~~eeA~~lf~eM~~~g~~P-----dvv 720 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV---SYSSLMGAC--SNAKNWKKALELYEDIKSIKLRP-----TVS 720 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH--HhCCCHHHHHHHHHHHHHcCCCC-----CHH
Confidence 33445556666665444444454433322211100 111123333 46788888888888765432111 124
Q ss_pred HHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 365 SLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 365 ~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
++..|-..|.+.|+.++|.++...- .-..-.||. .+...|=..|.+.|+.+.|.+.+.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM-~~~Gi~Pd~----~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEM-KRLGLCPNT----ITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5777777888888888888887763 334455773 333333467888888888776544
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.97 E-value=0.019 Score=54.85 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=89.8
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HHhCC--c
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELY-ETQLL--S 78 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y-~~~~~--~ 78 (466)
++.+|+.+++.+|.. +..+..+|.++ ....+.+.|..++++|+.+-.. ..+....+|.++ ...|+ .
T Consensus 58 ~i~~l~~~L~~~P~~---~~~w~~Lg~~~-~~~g~~~~A~~a~~~Al~l~P~-------~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 58 QLQALQDKIRANPQN---SEQWALLGEYY-LWRNDYDNALLAYRQALQLRGE-------NAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred HHHHHHHHHHHCCCC---HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCCCCc
Confidence 356677777666533 23677888874 3678899999999999887332 245667889874 67776 4
Q ss_pred cchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 79 NLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 79 ~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
+.+..+++++++.-.+. -..++.||..+...|||+.|+..+++.++....
T Consensus 127 ~~A~~~l~~al~~dP~~----~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 127 PQTREMIDKALALDANE----VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88999999999988655 356778999999999999999999999888775
No 62
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.94 E-value=1.4 Score=52.33 Aligned_cols=300 Identities=12% Similarity=0.020 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhc-ChHHHHH
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISN-AQYTRVL 141 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~-d~~~~~l 141 (466)
.++..|-..|.+.|.+..+..++++..+.--..-... +.-+...++..|+++.|.+.++.-.+ .| .|-...+
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t---ynsLI~~y~k~G~vd~A~~vf~eM~~----~Gv~PdvvTy 510 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL---YTTLISTCAKSGKVDAMFEVFHEMVN----AGVEANVHTF 510 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhCcCHHHHHHHHHHHHH----cCCCCCHHHH
Confidence 4555666667777777777777776655432111122 23455666777777777777665432 22 2333444
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q psy9584 142 FLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQP 221 (466)
Q Consensus 142 f~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~ 221 (466)
-.+..+..-. +.++.++.-...+.+. |. .+-..+|--++..|+ ..|++..+.+.++++......
T Consensus 511 naLI~gy~k~-----G~~eeAl~lf~~M~~~--Gv---~PD~vTYnsLI~a~~--k~G~~deA~~lf~eM~~~~~g---- 574 (1060)
T PLN03218 511 GALIDGCARA-----GQVAKAFGAYGIMRSK--NV---KPDRVVFNALISACG--QSGAVDRAFDVLAEMKAETHP---- 574 (1060)
T ss_pred HHHHHHHHHC-----cCHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhcCC----
Confidence 4443333211 1122222222222221 22 123445555555554 457777777777766432100
Q ss_pred CCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhhHHhhh---hcchh--hHHHHHHHHHHHHHhC
Q psy9584 222 TWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVERL---SQERE--LWTFANLNLAIVYLRG 296 (466)
Q Consensus 222 ~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~eAl~~---~~~~~--~~~~~~lNlai~Yl~~ 296 (466)
.-| +.++..-++.. |.-.|+... |++. ..+.+ ....++..+...|.+.
T Consensus 575 ------------------i~P--D~vTynaLI~a------y~k~G~lde-A~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 575 ------------------IDP--DHITVGALMKA------CANAGQVDR-AKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred ------------------CCC--cHHHHHHHHHH------HHHCCCHHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 011 22333444444 433443322 2222 11111 1123445566678887
Q ss_pred CCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhc
Q psy9584 297 KREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSL 376 (466)
Q Consensus 297 ~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~ 376 (466)
|+-.+...+++++...++..... +-..++.++ ...+++.+|.+++.+..+..- .....++..|...|.+.
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~---TynsLI~a~--~k~G~~eeA~~l~~eM~k~G~-----~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEV---FFSALVDVA--GHAGDLDKAFEILQDARKQGI-----KLGTVSYSSLMGACSNA 697 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH--HhCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhC
Confidence 76555555555544443321111 111123333 467999999999999876322 22344778888999999
Q ss_pred CChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 377 GNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 377 ~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
|+.++|.+....-.. ..-.||+ .+...|=+.|.+.|+.++|.+.+.
T Consensus 698 G~~eeA~~lf~eM~~-~g~~Pdv----vtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 698 KNWKKALELYEDIKS-IKLRPTV----STMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999998876433 3346774 334556678999999999988766
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.92 E-value=0.0049 Score=61.01 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=70.0
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~ 406 (466)
+..|-.....|++.+|.+.++++++...+...- ...+++++...|+.+++...++....-+...|+ +|.
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~------~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~----~~~- 218 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDA------RNALAWLLIDMGDYDEAREALKRLLKAAPDDPD----LWD- 218 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH------HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC----HCH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH----HHH-
Confidence 445555578999999999999999988765432 335788889999999988888888777766666 443
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q psy9584 407 AILKDLYKILNDPVRENEALQMHCN 431 (466)
Q Consensus 407 ~lL~~ly~~~g~~~~~~e~~~~~~~ 431 (466)
.|...|...|++++|.++++....
T Consensus 219 -~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 219 -ALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp -HHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred -HHHHHhcccccccccccccccccc
Confidence 567889999999999998876543
No 64
>KOG0547|consensus
Probab=96.91 E-value=0.85 Score=49.27 Aligned_cols=338 Identities=15% Similarity=0.092 Sum_probs=193.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHh
Q psy9584 31 LTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIH 110 (466)
Q Consensus 31 ~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~ 110 (466)
++..+++++|..++.+||.+|..-+-| ++..|-||...|.|...+.--.+++++--++ -..+|.+|.+|
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~p~epiF-------YsNraAcY~~lgd~~~Vied~TkALEl~P~Y----~KAl~RRA~A~ 193 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELCPDEPIF-------YSNRAACYESLGDWEKVIEDCTKALELNPDY----VKALLRRASAH 193 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCCchh-------hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH----HHHHHHHHHHH
Confidence 466788999999999999998874433 5778999999999988888888888887544 67788899998
Q ss_pred cccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHh--hhhc-----cccchHhhH
Q psy9584 111 AGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQV--ENWT-----GSQYQKEYL 183 (466)
Q Consensus 111 ~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~--~~~~-----g~~~~~e~L 183 (466)
-.-|+++.|+.=+... .+..--.+..+ ..-+++.|+..+... +.+. -.| -.-.+
T Consensus 194 E~lg~~~eal~D~tv~-ci~~~F~n~s~-----------------~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi 254 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVL-CILEGFQNASI-----------------EPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFI 254 (606)
T ss_pred HhhccHHHHHHhhhHH-HHhhhcccchh-----------------HHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHH
Confidence 8888888775433321 01110011111 111234444332211 1111 111 12233
Q ss_pred HHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHHH-----------hcCCCCCCCCccCCCCCC-cccccCcchhHHH
Q psy9584 184 KVFFLVLQVCHYLMAGQV---KSVKPCLKQLQQSILT-----------IMQPTWPSDEVVSGPNVG-DMFIWMPKEHLYV 248 (466)
Q Consensus 184 ~~~~~~L~i~~~l~~g~v---~~~k~~lkqLq~~~q~-----------i~~~~w~~~~~~~~~~~~-~~f~WLpk~~l~a 248 (466)
..||-+.. .+-+-.-++ ++-.++.+.++.+..- ....+..+..+.+ .++. +.. +--.-+
T Consensus 255 ~syf~sF~-~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~-~n~~d~~l----e~~A~a 328 (606)
T KOG0547|consen 255 ASYFGSFH-ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLS-VNEIDAEL----EYMAEA 328 (606)
T ss_pred HHHHhhcc-ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcc-ccccchhH----HHHHHH
Confidence 33433111 000001111 2223333333333211 0000000000000 0111 111 222344
Q ss_pred HHHHHHHhhhhhHHHhcCch--hh----HHhhh-hcchhhHHHHHHHHHHHHHhCCCchH---HHHHHhhhCCCcccccc
Q psy9584 249 VVYLVTVIGHLKFFGVTGTA--GT----EVERL-SQERELWTFANLNLAIVYLRGKREGD---FAALLERINPETLTSHS 318 (466)
Q Consensus 249 Lvyl~tv~~~lk~Flv~G~~--~~----eAl~~-~~~~~~~~~~~lNlai~Yl~~~~~~e---~~~~l~~i~~~~~~~~~ 318 (466)
|++-+|- +++-|+. ++ +++++ ..+.++ ++-+|.+|+......+ +.+.++.++|+.-.
T Consensus 329 l~~~gtF------~fL~g~~~~a~~d~~~~I~l~~~~~~l----yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--- 395 (606)
T KOG0547|consen 329 LLLRGTF------HFLKGDSLGAQEDFDAAIKLDPAFNSL----YIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--- 395 (606)
T ss_pred HHHhhhh------hhhcCCchhhhhhHHHHHhcCcccchH----HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc---
Confidence 5544444 4666665 33 25554 222222 6778889998663332 55666788886432
Q ss_pred chhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCC
Q psy9584 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPD 398 (466)
Q Consensus 319 ~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D 398 (466)
+||-+|=..|.-++|.+|+.-++++..+....-...+ =++-.-++++..+++|+....+. +|.|.
T Consensus 396 ------vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i------Ql~~a~Yr~~k~~~~m~~Fee~k---kkFP~ 460 (606)
T KOG0547|consen 396 ------VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI------QLCCALYRQHKIAESMKTFEEAK---KKFPN 460 (606)
T ss_pred ------hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HhCCC
Confidence 2344444457788999999999999998877665444 44445677778889998888775 57777
Q ss_pred hhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q psy9584 399 VHVQLWASAILKDLYKILNDPVRENEALQMHCNFSQM 435 (466)
Q Consensus 399 ~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~s~~ 435 (466)
- --...++.++.-..|++++|.+.|..-+.+...
T Consensus 461 ~---~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 461 C---PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred C---chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 3 567889999999999999999988776665443
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.88 E-value=0.011 Score=49.63 Aligned_cols=107 Identities=13% Similarity=-0.034 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhh
Q psy9584 19 EARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYW 98 (466)
Q Consensus 19 Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W 98 (466)
|+++.+..|..++. ..|.+.|..++++++..- + -......+...+|++|...|+++.+...+++.+....+.+ .
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~ 74 (119)
T TIGR02795 1 EEEAYYDAALLVLK-AGDYADAIQAFQAFLKKY---P-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-K 74 (119)
T ss_pred CcHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHC---C-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-c
Confidence 46778888887655 688999999999986532 1 1123356788899999999999999999999998764331 2
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 99 HCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 99 ~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.-..++.+|.++...|++..|++.++..++..-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 234567789999999999999999998877643
No 66
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.86 E-value=0.019 Score=48.10 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=76.4
Q ss_pred HHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHH
Q psy9584 326 YYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWA 405 (466)
Q Consensus 326 ~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~ 405 (466)
+|-.|...+.++++.+|.+++.+.++... .+.....+...+|.+++..|++++|.++...+.......+. ..|+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~ 78 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---APDA 78 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---ccHH
Confidence 35566667899999999999999987532 22344567788999999999999999999999977644443 3566
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q psy9584 406 SAILKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 406 ~~lL~~ly~~~g~~~~~~e~~~~ 428 (466)
...+..+|...|+++++.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHH
Confidence 77788889999999999766543
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.70 E-value=0.025 Score=49.10 Aligned_cols=99 Identities=14% Similarity=-0.025 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHH
Q psy9584 21 RTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHC 100 (466)
Q Consensus 21 ~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~ 100 (466)
.....+|..++ ...+.++|...++++..+- +.. ..+...+|.+|...|+++.+..+++++++..... .
T Consensus 18 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~---p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~ 85 (135)
T TIGR02552 18 EQIYALAYNLY-QQGRYDEALKLFQLLAAYD---PYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD----P 85 (135)
T ss_pred HHHHHHHHHHH-HcccHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----h
Confidence 34566666544 5689999999999986642 222 4677789999999999999999999998887533 3
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 101 RLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 101 ~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.+++.+|.++...||++.|+..++.++....
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4446789999999999999999998888754
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.64 E-value=0.026 Score=56.87 Aligned_cols=118 Identities=18% Similarity=0.090 Sum_probs=94.8
Q ss_pred cchhHHHhhcC-CCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccc
Q psy9584 2 CIQCLQAVFNF-KPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNL 80 (466)
Q Consensus 2 ai~CLeAvl~~-~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ 80 (466)
+|.++..++.. +..|...+..+...|.+ +....+.++|...+++++.+- |.+ ..++..+|.+|...|+++.
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~-~~~~g~~~~A~~~~~~Al~l~---P~~----~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVL-YDSLGLRALARNDFSQALALR---PDM----ADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHHCCCHHH
Confidence 46677777754 45788889999999987 345578999999999998762 223 4688999999999999999
Q ss_pred hhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 81 SKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 81 ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
+...+++++++.-++.. .++.+|.++...|+++.|++.++..+...-
T Consensus 117 A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 117 AYEAFDSVLELDPTYNY----AYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999998865422 345689999999999999999999886543
No 69
>PLN03077 Protein ECB2; Provisional
Probab=96.62 E-value=0.9 Score=52.40 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=72.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHH-hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHh
Q psy9584 286 NLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQS-FFQARYNEAKRYLRETLKMANAEDLNRLTSC 364 (466)
Q Consensus 286 ~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~-~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~ 364 (466)
.+.+...|.+.|+..+..+++++....++... .+.|+.-+.+ -..|++++|.+++++..+.-.- .-...
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi----~P~~~ 626 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPD------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI----TPNLK 626 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC----CCchH
Confidence 44455567776655555555544433322111 1112222222 3578899999999876532111 11234
Q ss_pred HHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy9584 365 SLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEAL 426 (466)
Q Consensus 365 ~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~ 426 (466)
.+..|...+.+.|+.+||++....- .--|| ...|.+-+- -++..|+.+.+..+.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd--~~~~~aLl~--ac~~~~~~e~~e~~a 680 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM----PITPD--PAVWGALLN--ACRIHRHVELGELAA 680 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC----CCCCC--HHHHHHHHH--HHHHcCChHHHHHHH
Confidence 6788999999999999999887642 12455 356877433 578888888775543
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.59 E-value=0.052 Score=51.94 Aligned_cols=145 Identities=14% Similarity=0.023 Sum_probs=98.2
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh------
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQ------ 75 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~------ 75 (466)
|+..++.+++..|.......+++.+|.+++ ...+.++|...+++++..... ..+.. .+.+.++.+|...
T Consensus 52 A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~---~~~~~-~a~~~~g~~~~~~~~~~~~ 126 (235)
T TIGR03302 52 AIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPN---HPDAD-YAYYLRGLSNYNQIDRVDR 126 (235)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcC---CCchH-HHHHHHHHHHHHhcccccC
Confidence 567788888766643344456788887754 468999999999998876443 22222 3678899999876
Q ss_pred --CCccchhHHHHHHHHhhchh-hhhHHHH------------HHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHH
Q psy9584 76 --LLSNLSKPILRRAIELSQHS-IYWHCRL------------IFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRV 140 (466)
Q Consensus 76 --~~~~~ak~~l~k~i~~s~~~-~~W~~~~------------~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~ 140 (466)
|.+..+...+.+.++..... ..|.... .+.+|..+...||+..|+..++..++.... +....++
T Consensus 127 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a 205 (235)
T TIGR03302 127 DQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEA 205 (235)
T ss_pred CHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHH
Confidence 56677888888888776422 1222111 235788889999999999999998766442 1234566
Q ss_pred HHHHHHHHHHhc
Q psy9584 141 LFLLSRCMLLLI 152 (466)
Q Consensus 141 lf~ls~~~~ll~ 152 (466)
++.+.+++..+.
T Consensus 206 ~~~l~~~~~~lg 217 (235)
T TIGR03302 206 LARLVEAYLKLG 217 (235)
T ss_pred HHHHHHHHHHcC
Confidence 666666665543
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.51 E-value=0.014 Score=45.06 Aligned_cols=63 Identities=25% Similarity=0.463 Sum_probs=53.1
Q ss_pred HHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcC-ChHHHHHhhHHHHHH
Q psy9584 324 AAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLG-NHRESMNMVTPAMQL 392 (466)
Q Consensus 324 ~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~-~~~ea~~~~~~a~~l 392 (466)
.+.+-.|...+.+++|.+|..++.+++++.... +..+..+|.++...| ++++|.+....++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 344557777799999999999999999986543 337889999999999 799999999999876
No 72
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.38 E-value=0.022 Score=46.11 Aligned_cols=83 Identities=20% Similarity=0.120 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhccc
Q psy9584 34 TKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGE 113 (466)
Q Consensus 34 T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~ 113 (466)
..|.+.|..++++.+..... + . .......||.||++.|++..+..++++ .+.... . ....+.+|.++...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~-~---~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~--~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-N-P---NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--N--PDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-T-H---HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--H--HHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHCCC-C-h---hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--C--HHHHHHHHHHHHHh
Confidence 35789999999998876443 1 1 344556689999999999999999988 333322 2 33444559999999
Q ss_pred ccHHHHHHHHHhH
Q psy9584 114 KDYELASSLLGVG 126 (466)
Q Consensus 114 ~D~~~A~~~L~~g 126 (466)
|+|+.|++.|++.
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999863
No 73
>KOG4162|consensus
Probab=96.32 E-value=1.8 Score=48.92 Aligned_cols=296 Identities=16% Similarity=0.180 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhhc--hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHH
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELSQ--HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRV 140 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~--~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~ 140 (466)
.+.+.||--|-.+++...|+...+.+++..+ +.+.||. ||-+...++++..|+...+..++-.-. -+.-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whL-----LALvlSa~kr~~~Al~vvd~al~E~~~---N~~l- 549 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHL-----LALVLSAQKRLKEALDVVDAALEEFGD---NHVL- 549 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHH-----HHHHHhhhhhhHHHHHHHHHHHHHhhh---hhhh-
Confidence 6677788888888999999999999999965 6778874 888999999999999998887765543 1000
Q ss_pred HHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccch------HhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q psy9584 141 LFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQ------KEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQS 214 (466)
Q Consensus 141 lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~------~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~ 214 (466)
.-+-+++. -..+..+.+|..|.++.+-|+..+.- .+.++.+-. +++...=..+.+++++...+-++..
T Consensus 550 ----~~~~~~i~-~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~-l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 550 ----MDGKIHIE-LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAG-LHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred ----chhhhhhh-hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcc-cccCcccccccchhhHHHHHHHHhh
Confidence 00011221 12444677778877776666422111 122222222 3333321122256666666666522
Q ss_pred HHHhcCCC-CCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhh--HHhhh-hcchhhHHHHHHHHH
Q psy9584 215 ILTIMQPT-WPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGT--EVERL-SQERELWTFANLNLA 290 (466)
Q Consensus 215 ~q~i~~~~-w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~--eAl~~-~~~~~~~~~~~lNla 290 (466)
......+. .|.... .++..=-|+-...++.+.-. . |+..|+... -++.. .....+.+..+.-.|
T Consensus 624 ~~~~~se~~Lp~s~~----~~~~~~~~~~~~~lwllaa~--~------~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G 691 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTV----LPGPDSLWYLLQKLWLLAAD--L------FLLSGNDDEARSCLLEASKIDPLSASVYYLRG 691 (799)
T ss_pred hhhcccccccCcccc----cCCCCchHHHHHHHHHHHHH--H------HHhcCCchHHHHHHHHHHhcchhhHHHHHHhh
Confidence 22211111 111111 22333234444444443211 1 333444432 02221 112234444444457
Q ss_pred HHHHhCCC--ch-HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHH
Q psy9584 291 IVYLRGKR--EG-DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLV 367 (466)
Q Consensus 291 i~Yl~~~~--~~-e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~ 367 (466)
..+...+. ++ +.+...=-++|... .+.+.| |.....-| ..+..+++-.+++++++... -.-+-.
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv-~s~~Al-a~~lle~G-----~~~la~~~~~L~dalr~dp~------n~eaW~ 758 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHV-PSMTAL-AELLLELG-----SPRLAEKRSLLSDALRLDPL------NHEAWY 758 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCc-HHHHHH-HHHHHHhC-----CcchHHHHHHHHHHHhhCCC------CHHHHH
Confidence 77777652 22 34444455777533 355666 66644444 77788888899999996543 345677
Q ss_pred HHHHHHHhcCChHHHHHhhHHHHHHhhcCCC
Q psy9584 368 LLGHIFLSLGNHRESMNMVTPAMQLASKIPD 398 (466)
Q Consensus 368 llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D 398 (466)
-||.++-.+|+.++|-+-...|.+|....|=
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8999999999999999999999999887764
No 74
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.31 E-value=0.069 Score=49.21 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhch
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQH 94 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~ 94 (466)
+.-.++.+++.+|..+ ....+.++|..++++++.+....+ ....++..+|.+|...|++..+...++++++....
T Consensus 30 ~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 30 KKAKEAFVYYRDGMSA-QADGEYAEALENYEEALKLEEDPN----DRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred cHhhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3446778888888774 455899999999999987644322 13568899999999999999999999999997643
Q ss_pred hhhhHHHHHHHHHHHhcc-------cccHHHHHHHHHhHHHHHH
Q psy9584 95 SIYWHCRLIFQLAQIHAG-------EKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 95 ~~~W~~~~~fqLA~i~~~-------~~D~~~A~~~L~~g~~~A~ 131 (466)
. ...++.++.++.. ++++..|+..++.+.++.+
T Consensus 105 ~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 105 Q----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred c----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 2 2233344555544 4566666666666655544
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.30 E-value=0.097 Score=47.86 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=74.5
Q ss_pred hHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhH
Q psy9584 322 RAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHV 401 (466)
Q Consensus 322 ~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~ 401 (466)
++.+++.-|...+-++++.+|...+++++++... +-..+.++.-+|.++...|++++|++....++.+-...++...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 4555566677778899999999999999998532 1223457889999999999999999999999987433332211
Q ss_pred H-HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q psy9584 402 Q-LWASAILKDLYKILNDPVRENEALQMHCNF 432 (466)
Q Consensus 402 q-lw~~~lL~~ly~~~g~~~~~~e~~~~~~~~ 432 (466)
. -.+...+.+++...|+++.+..++......
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 1 112233334444889998887766554443
No 76
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.29 E-value=1.6 Score=45.95 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=75.4
Q ss_pred HHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhH-------------------------HHHHHHHHHhcCChHHHHHh
Q psy9584 331 LQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCS-------------------------LVLLGHIFLSLGNHRESMNM 385 (466)
Q Consensus 331 ~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~-------------------------l~llg~i~l~~~~~~ea~~~ 385 (466)
.+...-|.+++|.+.+.++||-.-++.+-++..+. +..||.+++..+...+|...
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 33467799999999999999988877777766654 88999999999999999999
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy9584 386 VTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQ 427 (466)
Q Consensus 386 ~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~ 427 (466)
++.|+.......| ...|.+.|...|++..|.+-++
T Consensus 351 leaAl~~~~s~~~-------~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 351 LEAALKLRPSASD-------YAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHhcCCChhh-------HHHHHHHHHHcCChHHHHHHHH
Confidence 9988877766666 5788999999999999965444
No 77
>PLN03077 Protein ECB2; Provisional
Probab=96.26 E-value=1.7 Score=50.18 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHH
Q psy9584 284 FANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLK 351 (466)
Q Consensus 284 ~~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk 351 (466)
.++..|...|.+.++-.+..++++++......+.+..+ .|+ ...+++.||.+++++.++
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi-------~~~--~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII-------AGL--RLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH-------HHH--HHCCCHHHHHHHHHHHHh
Confidence 45555666777777666666777666554433333333 222 456777777777777653
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.17 E-value=0.14 Score=51.56 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=33.6
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHh
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLA 393 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lA 393 (466)
.|......|++++|...++.++++..... .++..+|.+++..|++++|.+....++++.
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLELDPTYN------YAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33444566666666666666666543321 244556666666666666666666665543
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.16 E-value=0.058 Score=46.80 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=70.4
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~ 406 (466)
+..|...+.++++.+|++.++.+++..... ...+..+|.+++..|++.+|.+....+..+..+.++. |
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~-- 88 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRP----Y-- 88 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHH----H--
Confidence 444555578999999999999988864332 3455688999999999999999999988876444442 2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q psy9584 407 AILKDLYKILNDPVRENEALQMHCN 431 (466)
Q Consensus 407 ~lL~~ly~~~g~~~~~~e~~~~~~~ 431 (466)
..+..+|...|++++|..+++....
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467789999999999887765443
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.06 E-value=0.038 Score=44.70 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=60.8
Q ss_pred hhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy9584 336 QARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKI 415 (466)
Q Consensus 336 ~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~ 415 (466)
+++|++|..++.+.++...... -...+..+|.++++.|++++|.+.... ...-. + ..+..-++.+.|-.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~---~---~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP---S---NPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH---C---HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC---C---CHHHHHHHHHHHHH
Confidence 6899999999999999887521 222555689999999999999998887 22222 2 24555578999999
Q ss_pred cCCchHHHHHHH
Q psy9584 416 LNDPVRENEALQ 427 (466)
Q Consensus 416 ~g~~~~~~e~~~ 427 (466)
+|++++|.+.++
T Consensus 71 l~~y~eAi~~l~ 82 (84)
T PF12895_consen 71 LGKYEEAIKALE 82 (84)
T ss_dssp TT-HHHHHHHHH
T ss_pred hCCHHHHHHHHh
Confidence 999999988765
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.03 E-value=2.2 Score=44.04 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcc--cCccH
Q psy9584 81 SKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLID--KKVND 158 (466)
Q Consensus 81 ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~--~~~~~ 158 (466)
.+....++-.+|+++... +.|.|.+ + .+.|++.+-..+. +|+. ..++++-|.. ++.+|
T Consensus 25 qq~~~~qa~~lsr~Yv~G---lNfLLs~----Q--~dKAvdlF~e~l~-----~d~~------t~e~~ltLGnLfRsRGE 84 (389)
T COG2956 25 QQDKQDQANRLSRDYVKG---LNFLLSN----Q--PDKAVDLFLEMLQ-----EDPE------TFEAHLTLGNLFRSRGE 84 (389)
T ss_pred HhhHHHHHhhccHHHHhH---HHHHhhc----C--cchHHHHHHHHHh-----cCch------hhHHHHHHHHHHHhcch
Confidence 444555566677666433 3444443 1 2345544444333 4442 2244444432 56778
Q ss_pred HHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q psy9584 159 AVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQ 213 (466)
Q Consensus 159 v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~ 213 (466)
|+++++-=..++++ .+.+ ..+-+...++.- -+|+.+|-+..+.+...+|..
T Consensus 85 vDRAIRiHQ~L~~s-pdlT-~~qr~lAl~qL~--~Dym~aGl~DRAE~~f~~L~d 135 (389)
T COG2956 85 VDRAIRIHQTLLES-PDLT-FEQRLLALQQLG--RDYMAAGLLDRAEDIFNQLVD 135 (389)
T ss_pred HHHHHHHHHHHhcC-CCCc-hHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHhc
Confidence 88887655555555 5665 334444444433 378888888888888887763
No 82
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.01 E-value=0.064 Score=55.76 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=76.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHH
Q psy9584 27 GNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQL 106 (466)
Q Consensus 27 a~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqL 106 (466)
|.-+ ....+++.|..++++|+.+... . ..++..+|.+|...|.+..|...+++++++.... ...+|.+
T Consensus 9 a~~a-~~~~~~~~Ai~~~~~Al~~~P~---~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----~~a~~~l 76 (356)
T PLN03088 9 AKEA-FVDDDFALAVDLYTQAIDLDPN---N----AELYADRAQANIKLGNFTEAVADANKAIELDPSL----AKAYLRK 76 (356)
T ss_pred HHHH-HHcCCHHHHHHHHHHHHHhCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHH
Confidence 4443 3457999999999999876333 2 3578899999999999999999999999998655 3346688
Q ss_pred HHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 107 AQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 107 A~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
|.++...|+|..|++.++.++.+.-
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998775
No 83
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.86 E-value=0.17 Score=46.27 Aligned_cols=113 Identities=12% Similarity=-0.040 Sum_probs=82.3
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhch
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQH 94 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~ 94 (466)
+..-++.+++.+|..+ ....+.++|..++++|+.+... + .....++..+|.+|...|.+..+...+++++++...
T Consensus 30 ~~~~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~-~---~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 30 SGEKEAFTYYRDGMSA-QSEGEYAEALQNYYEAMRLEID-P---YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred chhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcccc-c---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 4445788889998863 3457799999999999887332 1 123458899999999999999999999999988653
Q ss_pred hhhh---HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 95 SIYW---HCRLIFQLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 95 ~~~W---~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
.... ...++.+++..+...||+..|+..++.+.....+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3211 1223334444444889999999999998887554
No 84
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.79 E-value=0.94 Score=51.00 Aligned_cols=313 Identities=11% Similarity=0.033 Sum_probs=171.4
Q ss_pred cCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhccc
Q psy9584 34 TKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGE 113 (466)
Q Consensus 34 T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~ 113 (466)
..+.++|...++... ...+ +. .--.++..|...+...+....++++....+..--..-.. .+..|...|...
T Consensus 100 ~g~~~~Al~~f~~m~---~~~~-~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~---~~n~Li~~y~k~ 171 (697)
T PLN03081 100 CGRHREALELFEILE---AGCP-FT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY---MMNRVLLMHVKC 171 (697)
T ss_pred CCCHHHHHHHHHHHH---hcCC-CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH---HHHHHHHHHhcC
Confidence 345778887777532 1111 11 223456777788888888888888887776654322122 234566888999
Q ss_pred ccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHH
Q psy9584 114 KDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVC 193 (466)
Q Consensus 114 ~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~ 193 (466)
|+++.|.+.++...+ +-...+-.+..+.... +..+.++.-..++.+. |. .+...+|..+++.|
T Consensus 172 g~~~~A~~lf~~m~~-------~~~~t~n~li~~~~~~-----g~~~~A~~lf~~M~~~--g~---~p~~~t~~~ll~a~ 234 (697)
T PLN03081 172 GMLIDARRLFDEMPE-------RNLASWGTIIGGLVDA-----GNYREAFALFREMWED--GS---DAEPRTFVVMLRAS 234 (697)
T ss_pred CCHHHHHHHHhcCCC-------CCeeeHHHHHHHHHHC-----cCHHHHHHHHHHHHHh--CC---CCChhhHHHHHHHH
Confidence 999999988876532 2222333333333211 2233344444444332 22 12344556666666
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhhHHh
Q psy9584 194 HYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVE 273 (466)
Q Consensus 194 ~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~eAl 273 (466)
.. .|.+...++....+. .. +. .| +.++..-|+.+ |.-.|.... |.
T Consensus 235 ~~--~~~~~~~~~l~~~~~---~~--g~-------------------~~--d~~~~n~Li~~------y~k~g~~~~-A~ 279 (697)
T PLN03081 235 AG--LGSARAGQQLHCCVL---KT--GV-------------------VG--DTFVSCALIDM------YSKCGDIED-AR 279 (697)
T ss_pred hc--CCcHHHHHHHHHHHH---Hh--CC-------------------Cc--cceeHHHHHHH------HHHCCCHHH-HH
Confidence 43 355555544433221 11 10 00 12223334444 433343322 33
Q ss_pred hh---hcchhhHHHHHHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHH-hhhhcHHHHHHHHHHH
Q psy9584 274 RL---SQERELWTFANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQS-FFQARYNEAKRYLRET 349 (466)
Q Consensus 274 ~~---~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~-~~~~~~~eAk~~lre~ 349 (466)
+. ..+++. .++..+...|.+.|+..+...++++....++.. ....|..-+.+ -..+++++|++.+.+.
T Consensus 280 ~vf~~m~~~~~--vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p------d~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 280 CVFDGMPEKTT--VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI------DQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHhCCCCCh--hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 32 223433 345667777888776555555554443332211 11123222222 3578999999999998
Q ss_pred HHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q psy9584 350 LKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 350 lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~ 428 (466)
++..-..| ..+++.|...|...|+.++|++...... -+|. .-|.+ +-.-|.+.|+.++|.+.+..
T Consensus 352 ~~~g~~~d-----~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~--~t~n~--lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 352 IRTGFPLD-----IVANTALVDLYSKWGRMEDARNVFDRMP-----RKNL--ISWNA--LIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred HHhCCCCC-----eeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCe--eeHHH--HHHHHHHcCCHHHHHHHHHH
Confidence 87543332 2345678889999999999998876432 1453 34544 44789999999999886654
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.78 E-value=0.042 Score=42.31 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHH
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEK-DYELASSLLGVGVDY 129 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~-D~~~A~~~L~~g~~~ 129 (466)
.....+|.+++..|++..|...+.++|+.-.+. ...++.+|.++...| ++..|++.+++++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN----AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 467789999999999999999999999998654 347778999999999 899999999998875
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.72 E-value=0.084 Score=52.82 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHH--HHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhh
Q psy9584 19 EARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVK--FEAASVLAELYETQLLSNLSKPILRRAIELSQHSI 96 (466)
Q Consensus 19 Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K--~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~ 96 (466)
+.......|--|+....+.++|...+++.+.. |++-. -.+++.||++|+..|++..|...+++.+...-+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKK------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-
Confidence 45777777766655568899999999986543 55433 4789999999999999999999999999887654
Q ss_pred hhHHHHHHHHHHHhcccccHHHHHHHHHhHHHH
Q psy9584 97 YWHCRLIFQLAQIHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 97 ~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~ 129 (466)
.|....++.+|.++...||++.|++.|+..++.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677888899999999999999999999987654
No 87
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.70 E-value=0.19 Score=46.27 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=66.5
Q ss_pred hhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChh
Q psy9584 321 LRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVH 400 (466)
Q Consensus 321 L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~ 400 (466)
-++.++|-.|......|++.+|..+++++++....... .+.++..+|.++...|++++|......++.+..+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---- 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence 34555566777778899999999999999987654321 24578899999999999999999999999875433
Q ss_pred HHHHHHHHHHHHHHHcCCc
Q psy9584 401 VQLWASAILKDLYKILNDP 419 (466)
Q Consensus 401 ~qlw~~~lL~~ly~~~g~~ 419 (466)
..+...+..+|...|+.
T Consensus 106 --~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 106 --PSALNNIAVIYHKRGEK 122 (172)
T ss_pred --HHHHHHHHHHHHHcCCh
Confidence 22334556666666553
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.54 E-value=0.24 Score=44.56 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHH
Q psy9584 25 QLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF 104 (466)
Q Consensus 25 rla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~f 104 (466)
.+|..+ ..-.+.++|..++.+++.+- + -..+++..+|.++...|++..+...+++++++.-++ ...++
T Consensus 29 ~~g~~~-~~~g~~~~A~~~~~~al~~~---P----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~----~~a~~ 96 (144)
T PRK15359 29 ASGYAS-WQEGDYSRAVIDFSWLVMAQ---P----WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH----PEPVY 96 (144)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcC---C----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----cHHHH
Confidence 456655 44566888999999987652 1 135788999999999999999999999999987655 44455
Q ss_pred HHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 105 QLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 105 qLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.+|.++...|+++.|++.++..+...-
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 788899999999999999999887654
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.46 E-value=0.1 Score=54.31 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=64.3
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~ 406 (466)
+..|-.+|..++|.+|.++|++++++.... ...++.+|.+++..|++++|...+..++.+....+. +.
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~------a~ 73 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAK------AY 73 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH------HH
Confidence 345666678888888888888888765543 235677888888888888888888888887654333 33
Q ss_pred HHHHHHHHHcCCchHHHHHHHHH
Q psy9584 407 AILKDLYKILNDPVRENEALQMH 429 (466)
Q Consensus 407 ~lL~~ly~~~g~~~~~~e~~~~~ 429 (466)
..+..+|..+|+++.|.++++.-
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 45566777888888887766543
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.16 E-value=0.16 Score=45.70 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=71.9
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHH
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAI 408 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~l 408 (466)
.|...+..|++.+|..+++.+++..... ..++..+|.++...|++++|......++.+.-.-++. ..-
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a------~~~ 97 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP------VYQ 97 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH------HHH
Confidence 4555689999999999999998865442 4567799999999999999999999999886655552 333
Q ss_pred HHHHHHHcCCchHHHHHHHHHHH
Q psy9584 409 LKDLYKILNDPVRENEALQMHCN 431 (466)
Q Consensus 409 L~~ly~~~g~~~~~~e~~~~~~~ 431 (466)
+..++...|+++.|.++++.-..
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678899999999887765443
No 91
>KOG0547|consensus
Probab=95.12 E-value=6.2 Score=42.93 Aligned_cols=273 Identities=16% Similarity=0.126 Sum_probs=165.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccccch----HHH--HHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHH
Q psy9584 32 THTKNIDLARNHLEQAWHLSQSINAFD----DVK--FEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQ 105 (466)
Q Consensus 32 ~~T~N~~~A~~hLeka~~L~~~~~~~~----d~K--~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fq 105 (466)
...+.++.|...+++....+.....+- +++ .++..+-|-.++..|+.-.+..-+.++|.+-...+ .++--
T Consensus 290 ~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~ 365 (606)
T KOG0547|consen 290 GLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIK 365 (606)
T ss_pred hCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHH
Confidence 334457788888887776555433222 233 55566667778888887778888999998886432 22445
Q ss_pred HHHHhcccccHHHHHHHHHhHHHHHHHhcChH---HHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhh
Q psy9584 106 LAQIHAGEKDYELASSLLGVGVDYANISNAQY---TRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEY 182 (466)
Q Consensus 106 LA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~---~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~ 182 (466)
+|.+++-++|...-...++++.++..+.-|.| =++.| +| +.++++++.- +..+.+ ..+.
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-------lL-----~q~e~A~aDF----~Kai~L--~pe~ 427 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-------LL-----QQYEEAIADF----QKAISL--DPEN 427 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-------HH-----HHHHHHHHHH----HHHhhc--Chhh
Confidence 78888888998888888888888887666632 22233 11 1233332221 111111 2233
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHH
Q psy9584 183 LKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFF 262 (466)
Q Consensus 183 L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~F 262 (466)
.--| +|.||.+.--. ...++++-.+..+..+..
T Consensus 428 ~~~~---iQl~~a~Yr~~--k~~~~m~~Fee~kkkFP~------------------------------------------ 460 (606)
T KOG0547|consen 428 AYAY---IQLCCALYRQH--KIAESMKTFEEAKKKFPN------------------------------------------ 460 (606)
T ss_pred hHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHhCCC------------------------------------------
Confidence 3333 44676554211 333445555544444221
Q ss_pred HhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCC-C-ch-HHHHHHhhhCCC--ccccccchhhHHHHHH-HhH-HHhh
Q psy9584 263 GVTGTAGTEVERLSQERELWTFANLNLAIVYLRGK-R-EG-DFAALLERINPE--TLTSHSHSLRAAAYYV-QGL-QSFF 335 (466)
Q Consensus 263 lv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~-~-~~-e~~~~l~~i~~~--~~~~~~~~L~a~~~yv-~~~-~~~~ 335 (466)
.++. +.--|-+...++ . ++ +.|.+.-+++|. .+.- ++..|| .|+ ...-
T Consensus 461 ---------------~~Ev----y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v------~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 461 ---------------CPEV----YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV------NAAPLVHKALLVLQW 515 (606)
T ss_pred ---------------CchH----HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc------cchhhhhhhHhhhch
Confidence 1222 222244555544 2 34 588888778775 2211 222244 222 1236
Q ss_pred hhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHH
Q psy9584 336 QARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWA 405 (466)
Q Consensus 336 ~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~ 405 (466)
++++++|...+++++++.+.-|. ++..||++-+..|+-++|.++...+.++|+. -+..++..+
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~------A~~tlaq~~lQ~~~i~eAielFEksa~lArt-~~E~~~a~s 578 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQ------AYETLAQFELQRGKIDEAIELFEKSAQLART-ESEMVHAYS 578 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-HHHHHHHHH
Confidence 79999999999999999988875 5668999999999999999999999999975 344444444
No 92
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.07 E-value=0.076 Score=40.50 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=46.5
Q ss_pred hHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHh
Q psy9584 330 GLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLA 393 (466)
Q Consensus 330 ~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lA 393 (466)
|...+.+|++.+|.+.++++++.... ...++..+|.+++..|++++|......+++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34448899999999999999997643 45577799999999999999999888887553
No 93
>KOG1126|consensus
Probab=95.01 E-value=0.59 Score=51.76 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=76.4
Q ss_pred chhhHHHHHHHHHHHHHhCCCch---HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhh
Q psy9584 278 ERELWTFANLNLAIVYLRGKREG---DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMAN 354 (466)
Q Consensus 278 ~~~~~~~~~lNlai~Yl~~~~~~---e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~ 354 (466)
||...++ ...+|.+|.+.|+.. ++++.+--++|.... .+ |=+|...|.-++|+||++.|.|..+++.
T Consensus 519 NP~nsvi-~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l--~~-------~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 519 NPSNSVI-LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL--CK-------YHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred CccchhH-HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch--hH-------HHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 4444443 234588888877433 466666556664322 12 3344444899999999999999999888
Q ss_pred hhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCC
Q psy9584 355 AEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPD 398 (466)
Q Consensus 355 ~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D 398 (466)
+|. ..+.++|.||-+.|+..-|.+-..-|+++--|-.|
T Consensus 589 ~es------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 589 QES------SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chH------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 874 35669999999999999999999999998777766
No 94
>KOG0624|consensus
Probab=94.82 E-value=6.1 Score=41.35 Aligned_cols=334 Identities=15% Similarity=0.127 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhh
Q psy9584 18 VEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIY 97 (466)
Q Consensus 18 ~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~ 97 (466)
.|+.-||.+|+-|+.. --...|-||+..|+.+ +---|.|.+-=|-+|.-+|.-.++.+=|.+.|++--++
T Consensus 36 advekhlElGk~lla~-~Q~sDALt~yHaAve~-------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-- 105 (504)
T KOG0624|consen 36 ADVEKHLELGKELLAR-GQLSDALTHYHAAVEG-------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-- 105 (504)
T ss_pred HHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHcC-------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH--
Confidence 4555666666555443 2355566666666553 12347788888999999997777888788888887555
Q ss_pred hHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcC-hHHHH-HHHHHHHHH----HhcccCccHHHHHHHHHhhHhh
Q psy9584 98 WHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNA-QYTRV-LFLLSRCML----LLIDKKVNDAVQLLTQAGYQVE 171 (466)
Q Consensus 98 W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d-~~~~~-lf~ls~~~~----ll~~~~~~~v~~al~~~~~l~~ 171 (466)
+..+.|.+.++..+|.++.|..-+..-++-....|. ...+- +..+.+-.+ +..+...+.-..++..+.++++
T Consensus 106 --~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 106 --MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred --HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 778889999999999999886655554443322221 11111 222222211 1123333333444555555554
Q ss_pred hhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHH
Q psy9584 172 NWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVY 251 (466)
Q Consensus 172 ~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvy 251 (466)
-. | -... +++ .|.-||..+|+++.+=..||+-..+-+.
T Consensus 184 i~---~-Wda~---l~~-~Rakc~i~~~e~k~AI~Dlk~askLs~D---------------------------------- 221 (504)
T KOG0624|consen 184 IQ---P-WDAS---LRQ-ARAKCYIAEGEPKKAIHDLKQASKLSQD---------------------------------- 221 (504)
T ss_pred cC---c-chhH---HHH-HHHHHHHhcCcHHHHHHHHHHHHhcccc----------------------------------
Confidence 21 0 0011 233 6788899999998888777776544221
Q ss_pred HHHHhhhhhHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCC-Cch--HHHHHHhhhCCC---ccccccchhhHHH
Q psy9584 252 LVTVIGHLKFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGK-REG--DFAALLERINPE---TLTSHSHSLRAAA 325 (466)
Q Consensus 252 l~tv~~~lk~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~-~~~--e~~~~l~~i~~~---~~~~~~~~L~a~~ 325 (466)
++-.+-... -+.|--+. +.+ +..+-+ +++|+ |+| .++.||--.
T Consensus 222 ----------------------------nTe~~ykis-~L~Y~vgd~~~sL~~iRECL-KldpdHK~Cf~-~YKklkKv~ 270 (504)
T KOG0624|consen 222 ----------------------------NTEGHYKIS-QLLYTVGDAENSLKEIRECL-KLDPDHKLCFP-FYKKLKKVV 270 (504)
T ss_pred ----------------------------chHHHHHHH-HHHHhhhhHHHHHHHHHHHH-ccCcchhhHHH-HHHHHHHHH
Confidence 010100000 11111111 010 111111 24554 222 455554422
Q ss_pred H-HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHH
Q psy9584 326 Y-YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLW 404 (466)
Q Consensus 326 ~-yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw 404 (466)
. ++++=.+.-++++.+|..-...+++--..+-..|+- +.-++-+.|-..++..||..-++.++++-..--++..+-=
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~--~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN--GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee--eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 2 335556678899999999999999965554333222 2334456778899999999999999987543333322333
Q ss_pred HHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHH
Q psy9584 405 ASAILKDLYKILN-DPVRENEALQMHCNFSQMLLK 438 (466)
Q Consensus 405 ~~~lL~~ly~~~g-~~~~~~e~~~~~~~~s~~l~~ 438 (466)
-..+..+-|++.= |++.|.|.-.-+....+.+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3466777777654 888888877777777777643
No 95
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.66 E-value=0.084 Score=40.24 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHH
Q psy9584 67 VLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 67 lLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~ 129 (466)
.+|+.|...|+++.+...+++.++..-+ ....++.+|.++...|++..|++.++..++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999988743 4677788999999999999999999988764
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.40 E-value=0.44 Score=46.88 Aligned_cols=145 Identities=18% Similarity=0.103 Sum_probs=81.0
Q ss_pred HHhcCchhh------HHhhhhcchhhHHHHHHHHHHHHHhCC-Cc-h-HHHHHHhhhCCC-ccccccchhhHHHHHHHhH
Q psy9584 262 FGVTGTAGT------EVERLSQERELWTFANLNLAIVYLRGK-RE-G-DFAALLERINPE-TLTSHSHSLRAAAYYVQGL 331 (466)
Q Consensus 262 Flv~G~~~~------eAl~~~~~~~~~~~~~lNlai~Yl~~~-~~-~-e~~~~l~~i~~~-~~~~~~~~L~a~~~yv~~~ 331 (466)
|+..|+..+ +||+..-+ ...+.+-+|.+|...| .+ + +.|..+-.+.|. +-.- .+ .|-
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL------NN----YG~ 111 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL------NN----YGA 111 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh------hh----hhH
Confidence 566666665 35554221 2234555677777755 22 2 455555556654 1110 11 122
Q ss_pred HHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHH
Q psy9584 332 QSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKD 411 (466)
Q Consensus 332 ~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ 411 (466)
+.--+++|.+|.+++++++.. ..= --.+-++.-+|...++.|+..+|++..+.++.+=...|-. ..-+.+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~-P~Y---~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~------~l~~a~ 181 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALAD-PAY---GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA------LLELAR 181 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhC-CCC---CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH------HHHHHH
Confidence 334567777777777777652 111 1233456677777777777888888777777765555443 233445
Q ss_pred HHHHcCCchHHHHHHHHH
Q psy9584 412 LYKILNDPVRENEALQMH 429 (466)
Q Consensus 412 ly~~~g~~~~~~e~~~~~ 429 (466)
.....||+..|.-++..+
T Consensus 182 ~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 182 LHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHhcccchHHHHHHHHH
Confidence 555677777775555444
No 97
>KOG2003|consensus
Probab=94.03 E-value=9.7 Score=41.13 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHH
Q psy9584 25 QLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF 104 (466)
Q Consensus 25 rla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~f 104 (466)
-+|+|.| .-.|+..|-.++..|++-..+++ .|.+......++..|.+.|+|.-+.+-+.++.+..-++. .. +
T Consensus 242 nigni~~-kkr~fskaikfyrmaldqvpsin--k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~---a~--~ 313 (840)
T KOG2003|consen 242 NIGNIHF-KKREFSKAIKFYRMALDQVPSIN--KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI---AA--L 313 (840)
T ss_pred eecceee-ehhhHHHHHHHHHHHHhhccccc--hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH---hh--h
Confidence 3566633 23467777777777777555543 466677778889999999999888888888888875431 11 2
Q ss_pred HHHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 105 QLAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 105 qLA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
.|.-.+..=||-+..-+.+++-+++-
T Consensus 314 nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 314 NLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred hhhhhheecCcHHHHHHHHHHHhcCC
Confidence 33444566678877777777776643
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.01 E-value=0.69 Score=45.56 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchh
Q psy9584 16 PRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHS 95 (466)
Q Consensus 16 p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~ 95 (466)
+..-+.+|++||--++ .-.|...|+.-||||+..-.+ -+.++..+|.+|.+.|+...+..-+|+++.+..+.
T Consensus 31 ~~~aa~arlqLal~YL-~~gd~~~A~~nlekAL~~DPs-------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 31 RNEAAKARLQLALGYL-QQGDYAQAKKNLEKALEHDPS-------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 4667889999997755 467899999999999764222 36799999999999999999999999999988532
Q ss_pred hhhHHHHHHHHHHHhcccccHHHHHHHHHhH
Q psy9584 96 IYWHCRLIFQLAQIHAGEKDYELASSLLGVG 126 (466)
Q Consensus 96 ~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g 126 (466)
-..+++-+..++.+|.|+.|-..++.+
T Consensus 103 ----GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 103 ----GDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred ----cchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 233334455555666666665555443
No 99
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.79 E-value=0.58 Score=46.85 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=72.5
Q ss_pred HHHHhHHHh-hhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHH
Q psy9584 326 YYVQGLQSF-FQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLW 404 (466)
Q Consensus 326 ~yv~~~~~~-~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw 404 (466)
.|-.|+..+ .+++|.+|...+++.++.-... ..+..++..+|.+|+..|++++|......... +.||...---
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~---~yP~s~~~~d 218 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVK---NYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCcchhH
Confidence 355566554 4689999999999999865543 45667789999999999999999988766554 4444433344
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHH
Q psy9584 405 ASAILKDLYKILNDPVRENEALQM 428 (466)
Q Consensus 405 ~~~lL~~ly~~~g~~~~~~e~~~~ 428 (466)
+.-.+..+|...||+++|.+.++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444567789899999999887764
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.64 E-value=0.74 Score=48.84 Aligned_cols=91 Identities=24% Similarity=0.187 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHH
Q psy9584 25 QLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF 104 (466)
Q Consensus 25 rla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~f 104 (466)
-+|++++. .++..+|-..+++++..... + ++...+.|+.+...+++..|..+.+++++.+-.. ++..+
T Consensus 205 ~LA~v~l~-~~~E~~AI~ll~~aL~~~p~----d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~----f~~W~ 272 (395)
T PF09295_consen 205 LLARVYLL-MNEEVEAIRLLNEALKENPQ----D---SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE----FETWY 272 (395)
T ss_pred HHHHHHHh-cCcHHHHHHHHHHHHHhCCC----C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----HHHHH
Confidence 36777665 35667777777777632111 1 6777778888888888888888888888888522 33334
Q ss_pred HHHHHhcccccHHHHHHHHHhHH
Q psy9584 105 QLAQIHAGEKDYELASSLLGVGV 127 (466)
Q Consensus 105 qLA~i~~~~~D~~~A~~~L~~g~ 127 (466)
.||.+|...|||+.|+-.|...=
T Consensus 273 ~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 273 QLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCc
Confidence 68888888888888887776543
No 101
>KOG1585|consensus
Probab=93.57 E-value=8.9 Score=38.45 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc-hhhhhHHHHHH-HHHHHhcccccHHHHHHHHHhHHHHHHHhcCh
Q psy9584 59 DVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ-HSIYWHCRLIF-QLAQIHAGEKDYELASSLLGVGVDYANISNAQ 136 (466)
Q Consensus 59 d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~-~~~~W~~~~~f-qLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~ 136 (466)
|...+++.--|.+|.-.+++..+|.-|+++++-.. +-..||..=-. |-|-+.-.-.-+..+..++++++..-.++|.|
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 45555555568899999999999999999997776 33456554444 44444444467888999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHH
Q psy9584 137 YTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVC 193 (466)
Q Consensus 137 ~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~ 193 (466)
.. ...+|-+++.+.++. . -.+.|++|.+.+-|.
T Consensus 108 -------------------dt-AAmaleKAak~lenv--~--Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 108 -------------------DT-AAMALEKAAKALENV--K--PDDALQLYQRALAVV 140 (308)
T ss_pred -------------------ch-HHHHHHHHHHHhhcC--C--HHHHHHHHHHHHHHH
Confidence 43 367788888888885 2 357888888855444
No 102
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.43 E-value=1.1 Score=39.58 Aligned_cols=94 Identities=20% Similarity=0.188 Sum_probs=70.8
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~ 406 (466)
|-.|--.-..|+..+|..+|++++...-+.+ .-.-+++-+|..+-.+|.++||..+++.+.. ..||-.+--...
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~~~l~ 78 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGA---DRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELNAALR 78 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCccccHHHH
Confidence 3334444779999999999999988533322 1224778899999999999999999998864 447644444555
Q ss_pred HHHHHHHHHcCCchHHHHHH
Q psy9584 407 AILKDLYKILNDPVRENEAL 426 (466)
Q Consensus 407 ~lL~~ly~~~g~~~~~~e~~ 426 (466)
..++......|+++.|.+..
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 66778889999999998765
No 103
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.30 E-value=0.26 Score=38.21 Aligned_cols=60 Identities=25% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 68 LAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 68 La~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
|.++|.+.++++.+..++.+.++...+. ..+++.+|.++...|+|..|.+.|+..++...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5788999999999999999999997653 45566799999999999999999999996665
No 104
>KOG0543|consensus
Probab=93.25 E-value=1.1 Score=47.30 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHHHhCCccchhHHHHH
Q psy9584 16 PRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINA--------FDDVKFEAASVLAELYETQLLSNLSKPILRR 87 (466)
Q Consensus 16 p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~--------~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k 87 (466)
.++++-++.+--.--++--.++.+|..-++||+.....-.. ..++|...+..||-||.+.+.|..|...-.+
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 36666666665533344557899999999999987664333 4478889999999999999999888888889
Q ss_pred HHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 88 AIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 88 ~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
.+++-.++ +..+|..+.++...|||+.|...+++.+.+.-.
T Consensus 283 vLe~~~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 283 VLELDPNN----VKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHhcCCCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 99888777 788889999999999999999999998887653
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.24 E-value=1.5 Score=41.78 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhCCCc--h-HHHHHHhhhCCCccccccchhhHHHHHHHhHHH-hhhhc--HHHHHHHHHHHHHhhhhhhh
Q psy9584 285 ANLNLAIVYLRGKRE--G-DFAALLERINPETLTSHSHSLRAAAYYVQGLQS-FFQAR--YNEAKRYLRETLKMANAEDL 358 (466)
Q Consensus 285 ~~lNlai~Yl~~~~~--~-e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~-~~~~~--~~eAk~~lre~lk~a~~~~l 358 (466)
...+||.+|+..++- + ++++.+-++.|+.- .+++-.|... +..|+ +++|.+.++++++...++.
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---------~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~- 144 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLRGENA---------ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV- 144 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh-
Confidence 567789999997743 3 47777777887422 1111122221 34455 6999999999999777653
Q ss_pred hhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChh
Q psy9584 359 NRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVH 400 (466)
Q Consensus 359 ~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~ 400 (466)
.++.++|..++..|++++|.+....++++-..-.+..
T Consensus 145 -----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 145 -----TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred -----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 3677999999999999999999999999888765543
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.03 E-value=1 Score=41.76 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=71.9
Q ss_pred ccch-HHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Q psy9584 55 NAFD-DVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANIS 133 (466)
Q Consensus 55 ~~~~-d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~ 133 (466)
.+.+ +-..+..+-+|-.+++.|++..|+.+++-.+..- +|..++.+.||-++-..|+|..|+..++.++.+.-
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-- 100 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-- 100 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--
Confidence 3456 6678888999999999999999999888877766 78889999999999999999999999999998885
Q ss_pred cChHHHHHHHHHHHHHH
Q psy9584 134 NAQYTRVLFLLSRCMLL 150 (466)
Q Consensus 134 ~d~~~~~lf~ls~~~~l 150 (466)
+|| +..|-+..+++.
T Consensus 101 ddp--~~~~~ag~c~L~ 115 (157)
T PRK15363 101 DAP--QAPWAAAECYLA 115 (157)
T ss_pred CCc--hHHHHHHHHHHH
Confidence 777 444545555433
No 107
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.92 E-value=0.88 Score=48.29 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=63.6
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly 413 (466)
+..++..+|.+.++++++..... +..|.+-+..++..++++.|.+.++.|..++-...+ -|. .|+++|
T Consensus 211 l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~----~W~--~La~~Y 278 (395)
T PF09295_consen 211 LLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE----TWY--QLAECY 278 (395)
T ss_pred HhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH----HHH--HHHHHH
Confidence 45788899999999999643322 666778889999999999999999999887643333 455 499999
Q ss_pred HHcCCchHHHH
Q psy9584 414 KILNDPVRENE 424 (466)
Q Consensus 414 ~~~g~~~~~~e 424 (466)
-..||+++|.-
T Consensus 279 i~~~d~e~ALl 289 (395)
T PF09295_consen 279 IQLGDFENALL 289 (395)
T ss_pred HhcCCHHHHHH
Confidence 99999999964
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.85 E-value=1.4 Score=41.01 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHH
Q psy9584 24 LQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLI 103 (466)
Q Consensus 24 Lrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~ 103 (466)
..+|-. ++...+.++|++.++.... ++-.-+.-...||-|+..+|.++.|.....+++.+..++ .+..
T Consensus 39 Y~~A~~-ly~~G~l~~A~~~f~~L~~-------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd----p~~~ 106 (157)
T PRK15363 39 YRYAMQ-LMEVKEFAGAARLFQLLTI-------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA----PQAP 106 (157)
T ss_pred HHHHHH-HHHCCCHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----chHH
Confidence 344533 4667789999998887432 333445677899999999999999999999999999766 5677
Q ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 104 FQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 104 fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
|.+|..+..-||...|.+.++.+++.+.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999984
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.77 E-value=0.23 Score=37.88 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=46.4
Q ss_pred hcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhH
Q psy9584 33 HTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWH 99 (466)
Q Consensus 33 ~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~ 99 (466)
...|+++|..++++++.. -|...++++ .||+||...|++..|+.++.+.+....+.+.|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~----~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARL----LLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHH----HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 356789999999998765 343555554 699999999999999999999988887765554
No 110
>KOG3785|consensus
Probab=92.66 E-value=15 Score=38.65 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q psy9584 368 LLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMH 429 (466)
Q Consensus 368 llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~ 429 (466)
-+.+.++-.||+.|||+....-... ++.| +.---.+|++.|-++|+|+-|-+.+-.-
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~--~ikn---~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGP--EIKN---KILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcCh--hhhh---hHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 4566677889999999876543221 2223 3344578999999999999997755443
No 111
>KOG0548|consensus
Probab=92.49 E-value=19 Score=39.41 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=66.5
Q ss_pred HHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHH
Q psy9584 328 VQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASA 407 (466)
Q Consensus 328 v~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~ 407 (466)
.+|-..|.-++|.+|.++|.++++.. -++.++-| --+-.|+.+|++.+|.+-+..+..+ |+ -|.-+
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYs----NRAac~~kL~~~~~aL~Da~~~ieL-----~p---~~~kg 428 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYS----NRAACYLKLGEYPEALKDAKKCIEL-----DP---NFIKA 428 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHH----HHHHHHHHHhhHHHHHHHHHHHHhc-----Cc---hHHHH
Confidence 34555589999999999999988865 66667666 6677788888888888888888887 33 24444
Q ss_pred HHH--HHHHHcCCchHHHHHHHHHHH
Q psy9584 408 ILK--DLYKILNDPVRENEALQMHCN 431 (466)
Q Consensus 408 lL~--~ly~~~g~~~~~~e~~~~~~~ 431 (466)
.+. -++..+.++++|.+.|+.-..
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 356778888888888876543
No 112
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.09 E-value=3.8 Score=47.13 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=99.5
Q ss_pred CCCchHHHHHHhhhCCC---ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhh-hhhhHHHhHHHHHHH
Q psy9584 296 GKREGDFAALLERINPE---TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE-DLNRLTSCSLVLLGH 371 (466)
Q Consensus 296 ~~~~~e~~~~l~~i~~~---~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~-~l~~l~~~~l~llg~ 371 (466)
..|-+|+..+++++..+ ...+...-+.|...=+.|..+..++++.+|.++.+.+++.--.. ...++.+ +..+|.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~--~sv~~~ 505 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA--LSVLGE 505 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh--hhhhhH
Confidence 33555555555554433 23455566678888889999999999999999999999865444 4455555 567899
Q ss_pred HHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHH
Q psy9584 372 IFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRE 422 (466)
Q Consensus 372 i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~ 422 (466)
.+.-.|.+.+|..|...+.++|++....+..+|+.-.-+.+...+|....|
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a 556 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA 556 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999944444
No 113
>KOG0553|consensus
Probab=92.01 E-value=1.2 Score=45.37 Aligned_cols=105 Identities=18% Similarity=0.107 Sum_probs=73.8
Q ss_pred HHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHH
Q psy9584 69 AELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCM 148 (466)
Q Consensus 69 a~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~ 148 (466)
+.=.++.+.|..|..-..++|++.-.++..+| ++|.+|+.=|.|..|++-+++++.+ +..|-+.+.+|..+.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyyc----NRAAAy~~Lg~~~~AVkDce~Al~i----Dp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYC----NRAAAYSKLGEYEDAVKDCESALSI----DPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHH----HHHHHHHHhcchHHHHHHHHHHHhc----ChHHHHHHHHHHHHH
Confidence 34456677788899999999999976666666 7999999999999999999887765 667888888877766
Q ss_pred HHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHH
Q psy9584 149 LLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVF 186 (466)
Q Consensus 149 ~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~ 186 (466)
+-+. +..+..+++..+-.|.+.+. .|++.|++-
T Consensus 160 ~~~g--k~~~A~~aykKaLeldP~Ne---~~K~nL~~A 192 (304)
T KOG0553|consen 160 LALG--KYEEAIEAYKKALELDPDNE---SYKSNLKIA 192 (304)
T ss_pred HccC--cHHHHHHHHHhhhccCCCcH---HHHHHHHHH
Confidence 4332 22333445666666665532 245554443
No 114
>KOG4555|consensus
Probab=91.89 E-value=3.6 Score=37.60 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhch
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQH 94 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~ 94 (466)
.|-+|+---|.+-.|-+.+.-..+.|-.-+.+|+.++...+ .++..=|..|..+|..+.+..=|.++++++-+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra-------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERA-------SAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch-------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 35667777777888888999999999999999999986533 57777788899999888899999999999975
Q ss_pred hhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcCh
Q psy9584 95 SIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQ 136 (466)
Q Consensus 95 ~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~ 136 (466)
-..=-|..+-|.+.+|--.||-+.| ..-++.|.+.|++
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~A----R~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAA----RADFEAAAQLGSK 147 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHH----HHhHHHHHHhCCH
Confidence 5556677778999999999999888 5555666777877
No 115
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.69 E-value=1.4 Score=36.87 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=51.6
Q ss_pred HhCCccchhHHHHHHHHhhc--hhh----hhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHH
Q psy9584 74 TQLLSNLSKPILRRAIELSQ--HSI----YWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLF 142 (466)
Q Consensus 74 ~~~~~~~ak~~l~k~i~~s~--~~~----~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf 142 (466)
+.|+++.+..-|.+..+.+. ... ...+ ..+.+|.++..-|+++.|++.++.++++|++.+|...-.++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~-all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~a 83 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAY-ALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYA 83 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 35678888888888777775 111 2233 34569999999999999999999999999999998544333
No 116
>KOG2581|consensus
Probab=91.43 E-value=11 Score=40.18 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=111.7
Q ss_pred ChhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHH-Hhh
Q psy9584 15 PPRVEARTHLQLGNILLTHTKN-IDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAI-ELS 92 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N-~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i-~~s 92 (466)
.+.+-|++..=+... +++.+ ...-+..|..-...+.-.| ..+.+.-...+|-|+|...+.+..+-....|.. =.+
T Consensus 164 lD~i~ak~~fy~~l~--~E~~~~l~~~rs~l~~~lrtAtLrh-d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~ 240 (493)
T KOG2581|consen 164 LDLIAAKLYFYLYLS--YELEGRLADIRSFLHALLRTATLRH-DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEA 240 (493)
T ss_pred HHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHHhhhcC-cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccc
Confidence 577777777777766 44444 2344555554444434444 788899999999999999998888777666643 111
Q ss_pred chhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHH---HhcccCccHHHHHHHHHhhH
Q psy9584 93 QHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCML---LLIDKKVNDAVQLLTQAGYQ 169 (466)
Q Consensus 93 ~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~---ll~~~~~~~v~~al~~~~~l 169 (466)
..+-.| +|++|=++-|-+.+.||.+|.+.+-.++.-|-+++. +-.--..-++|+ +|. |.+
T Consensus 241 ~snne~-ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a--lGf~q~v~k~~ivv~ll~--------------gei 303 (493)
T KOG2581|consen 241 ASNNEW-ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA--LGFRQQVNKLMIVVELLL--------------GEI 303 (493)
T ss_pred cccHHH-HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh--hhHHHHHHHHHHHHHHHc--------------CCC
Confidence 123366 899999999999999999999999988888776332 222222222222 111 111
Q ss_pred hhh-hccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q psy9584 170 VEN-WTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQS 214 (466)
Q Consensus 170 ~~~-~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~ 214 (466)
.|. .=..|-...+|..||. +..-+.-|+++-=.+-+.|....
T Consensus 304 Pers~F~Qp~~~ksL~~Yf~---Lt~AVr~gdlkkF~~~leq~k~~ 346 (493)
T KOG2581|consen 304 PERSVFRQPGMRKSLRPYFK---LTQAVRLGDLKKFNETLEQFKDK 346 (493)
T ss_pred cchhhhcCccHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 111 0133446679999999 44456778876666666655444
No 117
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.43 E-value=4.4 Score=41.06 Aligned_cols=255 Identities=19% Similarity=0.091 Sum_probs=126.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhc
Q psy9584 32 THTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHA 111 (466)
Q Consensus 32 ~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~ 111 (466)
+|+.|+..+-.-.+ ..+.-.+.+.+.-.+++|.|.-.|++..+.. .|.-+.+. . ......+|..+.
T Consensus 12 fy~G~Y~~~i~e~~-------~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~----ei~~~~~~-~--l~av~~la~y~~ 77 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-------LKSFSPENKLERDFYQYRSYIALGQYDSVLS----EIKKSSSP-E--LQAVRLLAEYLS 77 (290)
T ss_dssp HCTT-HHHHCHHHH-------CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH----HS-TTSSC-C--CHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHhh-------ccCCCchhHHHHHHHHHHHHHHcCChhHHHH----HhccCCCh-h--HHHHHHHHHHHh
Confidence 56666655543222 1123457899999999999999997653322 22222211 1 112234577666
Q ss_pred ccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHH
Q psy9584 112 GEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQ 191 (466)
Q Consensus 112 ~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~ 191 (466)
..++-..+++-++.-+.-....+++.++ +..+.++.. .+..+.++..++.- ..+..+.+.++
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~----~~~A~i~~~---~~~~~~AL~~l~~~-----------~~lE~~al~Vq 139 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQ----LLAATILFH---EGDYEEALKLLHKG-----------GSLELLALAVQ 139 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHH----HHHHHHHCC---CCHHHHHHCCCTTT-----------TCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHH----HHHHHHHHH---cCCHHHHHHHHHcc-----------CcccHHHHHHH
Confidence 6666666666665432222212233333 333333332 23344444444321 23343333333
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHHHhcCchhhH
Q psy9584 192 VCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTE 271 (466)
Q Consensus 192 i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~Flv~G~~~~e 271 (466)
.+|.-|.+..++..++.+++. .
T Consensus 140 --i~L~~~R~dlA~k~l~~~~~~----~---------------------------------------------------- 161 (290)
T PF04733_consen 140 --ILLKMNRPDLAEKELKNMQQI----D---------------------------------------------------- 161 (290)
T ss_dssp --HHHHTT-HHHHHHHHHHHHCC----S----------------------------------------------------
T ss_pred --HHHHcCCHHHHHHHHHHHHhc----C----------------------------------------------------
Confidence 446677787777777666411 0
Q ss_pred HhhhhcchhhHHHHHHHHHHHHHhCC--CchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHH
Q psy9584 272 VERLSQERELWTFANLNLAIVYLRGK--REGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRET 349 (466)
Q Consensus 272 Al~~~~~~~~~~~~~lNlai~Yl~~~--~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~ 349 (466)
++ .+.+++-.|.|.+..| .-.+.+-+.+++... .++ +..+ ....|.-.+.+|+|+||.+.+.++
T Consensus 162 ------eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~-t~~~----lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 162 ------ED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGS-TPKL----LNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp ------CC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S---SHHH----HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred ------Cc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCC-CHHH----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11 2344455566666644 223544455555432 111 2122 123445558999999999999999
Q ss_pred HHhhhhhhhhhHHHhHHHHHHHHHHhcCChH-HHHHhhHHHHHHhhcCCCh
Q psy9584 350 LKMANAEDLNRLTSCSLVLLGHIFLSLGNHR-ESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 350 lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~-ea~~~~~~a~~lAkK~~D~ 399 (466)
+..... . .-++.-+.-+....|+.. .+..... +|-+..|++
T Consensus 228 l~~~~~--~----~d~LaNliv~~~~~gk~~~~~~~~l~---qL~~~~p~h 269 (290)
T PF04733_consen 228 LEKDPN--D----PDTLANLIVCSLHLGKPTEAAERYLS---QLKQSNPNH 269 (290)
T ss_dssp CCC-CC--H----HHHHHHHHHHHHHTT-TCHHHHHHHH---HCHHHTTTS
T ss_pred HHhccC--C----HHHHHHHHHHHHHhCCChhHHHHHHH---HHHHhCCCC
Confidence 864322 2 224555666777777763 3443433 344456665
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.38 E-value=0.32 Score=37.09 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=43.8
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhc
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASK 395 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK 395 (466)
+-+|+|.+|.++++++++...... ...+.++.+++..|++++|+..+.........
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP------EARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 568999999999999998766532 23447999999999999999999876654433
No 119
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.29 E-value=0.39 Score=32.86 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=26.7
Q ss_pred HHHHHHHhcccccHHHHHHHHHhHHHHHHHhcCh
Q psy9584 103 IFQLAQIHAGEKDYELASSLLGVGVDYANISNAQ 136 (466)
Q Consensus 103 ~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~ 136 (466)
+..||.+|...|||+.|+++++..+.++...++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 4578999999999999999999988888766553
No 120
>PRK15331 chaperone protein SicA; Provisional
Probab=91.28 E-value=2.5 Score=39.53 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=78.8
Q ss_pred hccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 52 QSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 52 ~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
+.+++.++-..+..+-.|-=+++.|.+..|..+++=.+-. -+|..++.+.||..+-..++|..|+..+..++.+..
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4456799999999999999999999999888887765543 367788889999999999999999999999998885
Q ss_pred HhcChHHHHHHHHHHHHHHhccc
Q psy9584 132 ISNAQYTRVLFLLSRCMLLLIDK 154 (466)
Q Consensus 132 ~~~d~~~~~lf~ls~~~~ll~~~ 154 (466)
+|| +..|-.+++.+.|..+
T Consensus 103 --~dp--~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 103 --NDY--RPVFFTGQCQLLMRKA 121 (165)
T ss_pred --CCC--CccchHHHHHHHhCCH
Confidence 777 4478888887666443
No 121
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.02 E-value=18 Score=36.12 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=86.0
Q ss_pred HhCCccchhHHHHHHHHhh----chhhhhHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHH------hcChHHHHHH
Q psy9584 74 TQLLSNLSKPILRRAIELS----QHSIYWHCRLIFQLAQIHAGEK-DYELASSLLGVGVDYANI------SNAQYTRVLF 142 (466)
Q Consensus 74 ~~~~~~~ak~~l~k~i~~s----~~~~~W~~~~~fqLA~i~~~~~-D~~~A~~~L~~g~~~A~~------~~d~~~~~lf 142 (466)
..|+...|...+.|+=... .+...-.++.++..|.-....+ +++.|+..|+.+.++..+ ......++-+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3456666777777744443 1445666777778887777888 999999999999999543 3335556777
Q ss_pred HHHHHHH--HhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q psy9584 143 LLSRCML--LLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQL 211 (466)
Q Consensus 143 ~ls~~~~--ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqL 211 (466)
.+-++++ ++++...+.++++.+-++.+.... | ....+|++-++++.- .++.....+.|..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~-----~~~~~~~L~l~il~~--~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-G-----NKPEVFLLKLEILLK--SFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-C-----CCcHHHHHHHHHHhc--cCChhHHHHHHHHH
Confidence 7777776 677777777777777776664442 2 355677666788754 44444444444333
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=90.94 E-value=3.2 Score=47.29 Aligned_cols=114 Identities=11% Similarity=-0.073 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhH
Q psy9584 20 ARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWH 99 (466)
Q Consensus 20 a~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~ 99 (466)
+.++..||.++ ..-...++|+.+|+++..++... -.|...+|.+..+.+.++.|....+++++..-+.
T Consensus 86 ~~~~~~La~i~-~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---- 153 (694)
T PRK15179 86 ELFQVLVARAL-EAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---- 153 (694)
T ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC----
Confidence 66777888875 44577889999999987775442 3677888999999999999999888888888655
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHh
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLL 151 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll 151 (466)
....+.+|.++..-|+++.|++.+++.+. ..-+++. ..++.+++++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~----~~~~~a~~l~ 199 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFEN----GYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHH----HHHHHHHHHH
Confidence 66777889999999999999999999887 2224342 2345555555
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.66 E-value=18 Score=35.56 Aligned_cols=184 Identities=15% Similarity=0.047 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchh
Q psy9584 16 PRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHS 95 (466)
Q Consensus 16 p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~ 95 (466)
|..-+.....-|.-++. ..|.+.|...+++.... -| +.+.--.+...||.+|++.++++.|...+++.++..-+.
T Consensus 28 ~~~~~~~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~---yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQ-DGNWKQAITQLEALDNR---YP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHh---CC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 33445556677766544 68999999999997553 23 667888889999999999999999999999999998643
Q ss_pred hhhHHHHHHHHHHHh---------------cccccHHH---HHHHHHhHHHHHHHhcCh-HHHHHHHHHHHHHHhccc--
Q psy9584 96 IYWHCRLIFQLAQIH---------------AGEKDYEL---ASSLLGVGVDYANISNAQ-YTRVLFLLSRCMLLLIDK-- 154 (466)
Q Consensus 96 ~~W~~~~~fqLA~i~---------------~~~~D~~~---A~~~L~~g~~~A~~~~d~-~~~~lf~ls~~~~ll~~~-- 154 (466)
+.=-+ .++++|-.+ ..++|-.. |++.++.-++--= +++ .-++-+++..+.-.|...
T Consensus 103 ~~~~~-a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 103 PNIDY-VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--NSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred CchHH-HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--CChhHHHHHHHHHHHHHHHHHHHH
Confidence 32222 223344332 23455554 4455554333211 111 112223333332222211
Q ss_pred -------CccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy9584 155 -------KVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQ 212 (466)
Q Consensus 155 -------~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq 212 (466)
+.+.=..++++...++++.++.+...+.|..... -|...|....+++..+.|.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~-----ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN-----AYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH-----HHHHcCChHHHHHHHHHHh
Confidence 1122245889999999999999877777755444 3455677777777666654
No 124
>KOG1586|consensus
Probab=90.58 E-value=20 Score=35.83 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchH-HHHHH----HHHHHHHHHHh-CCccchhHHHHHHHHhhch
Q psy9584 21 RTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDD-VKFEA----ASVLAELYETQ-LLSNLSKPILRRAIELSQH 94 (466)
Q Consensus 21 ~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d-~K~~a----~slLa~~y~~~-~~~~~ak~~l~k~i~~s~~ 94 (466)
-|+..-++- +...|+.+|-..|++|+.+ |+| ++|.+ +--||++|..- ..++.+.....++=+.+++
T Consensus 75 t~YveA~~c--ykk~~~~eAv~cL~~aieI------yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 75 TTYVEAANC--YKKVDPEEAVNCLEKAIEI------YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HHHHHHHHH--hhccChHHHHHHHHHHHHH------HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 334444445 5556899999999999885 443 45554 34688888875 5566666666666666541
Q ss_pred --hhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChH--HHHHHHHHHHHHHhcccCccHHHHHHHHHhhHh
Q psy9584 95 --SIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQY--TRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQV 170 (466)
Q Consensus 95 --~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~--~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~ 170 (466)
..---..-+...|+..+--++|..|+++++..+...-.++--. +.-+| +-.++-||...|.=...++|..-.++.
T Consensus 147 ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf-lkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 147 EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF-LKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH-HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 1111122233456665666888999998888765554332211 11112 112233454333322345666667777
Q ss_pred hhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q psy9584 171 ENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQL 211 (466)
Q Consensus 171 ~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqL 211 (466)
++.+++.++ -++-+++.-+.++++..-.++.|+.
T Consensus 226 P~F~dsREc-------kflk~L~~aieE~d~e~fte~vkef 259 (288)
T KOG1586|consen 226 PAFTDSREC-------KFLKDLLDAIEEQDIEKFTEVVKEF 259 (288)
T ss_pred CcccccHHH-------HHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 776665322 2334556666677765555555444
No 125
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.24 E-value=8.2 Score=36.24 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhc
Q psy9584 55 NAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISN 134 (466)
Q Consensus 55 ~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~ 134 (466)
|.-.+---.++--||+.|++.|+++.|...+.++.+..- .+.=.....|.+..+....+|+..+..++.++-.+....|
T Consensus 29 n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 29 NLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 444555667888999999999999999998888777553 3344567778889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhcccCccHHHHHHHHH
Q psy9584 135 AQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQA 166 (466)
Q Consensus 135 d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~ 166 (466)
|...+-=+...+++..|..++...+.+.+-.+
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 99888888888998888877777665544333
No 126
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.18 E-value=0.57 Score=30.90 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 100 CRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 100 ~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
|+.++.+|.++...||++.|++.++++.++..
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46677888888888888888888888888765
No 127
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.15 E-value=0.63 Score=31.73 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcC
Q psy9584 362 TSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKI 396 (466)
Q Consensus 362 ~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~ 396 (466)
|+.++..||.+|...|++++|+++...++.+.++.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999887
No 128
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.90 E-value=0.72 Score=31.53 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh
Q psy9584 365 SLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 365 ~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~ 399 (466)
++..||.+|...|++++|+++-..++.+++...|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 46678888888899999988888888888776653
No 129
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.62 E-value=1 Score=43.45 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=61.4
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHH
Q psy9584 29 ILLTHTK-NIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLA 107 (466)
Q Consensus 29 lL~~~T~-N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA 107 (466)
++|.+|- |++.|+..+-++ +.-+..++ -++++.||-.|.+.+ .+.++++|.++++++.....-.-..+..||
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~----E~~~~l~t--~elq~aLAtyY~krD-~~Kt~~ll~~~L~l~~~~~~~n~eil~sLa 185 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQL----EGTPELET--AELQYALATYYTKRD-PEKTIQLLLRALELSNPDDNFNPEILKSLA 185 (203)
T ss_pred HHHHhhccCcHHHHHHHHHH----cCCCCCCC--HHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 4556666 788887776664 55555655 688999999998776 666999999999999733122233344799
Q ss_pred HHhcccccHHHH
Q psy9584 108 QIHAGEKDYELA 119 (466)
Q Consensus 108 ~i~~~~~D~~~A 119 (466)
+++..+|++..|
T Consensus 186 s~~~~~~~~e~A 197 (203)
T PF11207_consen 186 SIYQKLKNYEQA 197 (203)
T ss_pred HHHHHhcchhhh
Confidence 999999999876
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.60 E-value=7.1 Score=38.48 Aligned_cols=76 Identities=9% Similarity=0.068 Sum_probs=64.9
Q ss_pred HHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhH
Q psy9584 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHV 401 (466)
Q Consensus 323 a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~ 401 (466)
+...|..|...+..|+|++|.+.+++.+...... .....+.+.+|..+++.+++.+|..........--..|++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 4445888888899999999999999998865543 566677899999999999999999999999998888888743
No 131
>KOG1586|consensus
Probab=89.50 E-value=24 Score=35.23 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=81.2
Q ss_pred HHHHHHhCCccchhHHHHHHHHhhch--hhhhHHHHHHHHHHHhccc-ccHHHHHHHHHhHHHHHHHhcChHHHHHHHHH
Q psy9584 69 AELYETQLLSNLSKPILRRAIELSQH--SIYWHCRLIFQLAQIHAGE-KDYELASSLLGVGVDYANISNAQYTRVLFLLS 145 (466)
Q Consensus 69 a~~y~~~~~~~~ak~~l~k~i~~s~~--~~~W~~~~~fqLA~i~~~~-~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls 145 (466)
+.||.+.+ ...+-+.|.++|++..+ ...--.++.+.+|+++-.+ .|+..|+..++.++++.+.-.. ..+..
T Consensus 81 ~~cykk~~-~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-----~ssAN 154 (288)
T KOG1586|consen 81 ANCYKKVD-PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-----VSSAN 154 (288)
T ss_pred HHHhhccC-hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-----hhhHH
Confidence 44555553 44466789999999963 2233356667899999888 9999999999999999884222 22233
Q ss_pred HHHHHhcc--cCccHHHHHHHHHhhHhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy9584 146 RCMLLLID--KKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQ 212 (466)
Q Consensus 146 ~~~~ll~~--~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq 212 (466)
++++-... .....-..++..=.++..+.-+++--+-..+-||+ --..|+|-.+|+-.++.-|..-|
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyfl-kAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFL-KAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHH-HHHHHhHhcccHHHHHHHHHHHH
Confidence 33321100 00011122223334444444455556777788888 44555677777655555554444
No 132
>KOG1173|consensus
Probab=89.37 E-value=4 Score=44.87 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=80.5
Q ss_pred hcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc----hhhhhHHHHHHHHHH
Q psy9584 33 HTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ----HSIYWHCRLIFQLAQ 108 (466)
Q Consensus 33 ~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~----~~~~W~~~~~fqLA~ 108 (466)
.|+|...|+.++..|+.++...+ + -.+-+|.+.+..+.++.|..+++++++--. .-+.|+--+ .+||-
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dp-l------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~-~NLGH 463 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDP-L------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL-NNLGH 463 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcc-h------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH-HhHHH
Confidence 48999999999999998877765 1 234678899999999999999999885443 233686544 45999
Q ss_pred HhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHh
Q psy9584 109 IHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLL 151 (466)
Q Consensus 109 i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll 151 (466)
++-..+-|..|+..+++++....+ -..+..+++=++.++
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k----~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPK----DASTHASIGYIYHLL 502 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC----chhHHHHHHHHHHHh
Confidence 999999999999999999887553 334444444444444
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.36 E-value=4.3 Score=35.83 Aligned_cols=96 Identities=15% Similarity=-0.084 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHH
Q psy9584 22 THLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCR 101 (466)
Q Consensus 22 ~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~ 101 (466)
+++++|..+ ....+.++|.-++++++.. +- -.+.+.++.--||..|...|.++.+..+|+++++..-+. .|.-.
T Consensus 3 ~~~~~A~a~-d~~G~~~~Ai~~Y~~Al~~---gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~~~~ 76 (120)
T PF12688_consen 3 ALYELAWAH-DSLGREEEAIPLYRRALAA---GL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-ELNAA 76 (120)
T ss_pred hHHHHHHHH-HhcCCHHHHHHHHHHHHHc---CC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHH
Confidence 344444442 2233355555555555442 11 223444555555555555555555555555555433221 12222
Q ss_pred HHHHHHHHhcccccHHHHHHHH
Q psy9584 102 LIFQLAQIHAGEKDYELASSLL 123 (466)
Q Consensus 102 ~~fqLA~i~~~~~D~~~A~~~L 123 (466)
+.--+|-+....|+.+.|++.+
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHH
Confidence 2222444445555555554444
No 134
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=89.24 E-value=15 Score=38.19 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCccchhHHHHHHHHhhc-hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 64 AASVLAELYETQLLSNLSKPILRRAIELSQ-HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 64 a~slLa~~y~~~~~~~~ak~~l~k~i~~s~-~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
|..-|..+|.....|..|..+-++-..+.. .+..=...|+-.||+.+....|++.|.+.+++++.-..
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~ 211 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK 211 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc
Confidence 333344444444444333333333222221 33444556677788888888888888888888776544
No 135
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=89.17 E-value=40 Score=37.22 Aligned_cols=310 Identities=14% Similarity=0.081 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHH
Q psy9584 29 ILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQ 108 (466)
Q Consensus 29 lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~ 108 (466)
.++.+....++|-.||++... .-=-|....-..|++|.+.|.+..|..+.+.-|+.-.++... +-.|..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Y----y~~L~~ 80 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDY----YRGLEE 80 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH----HHHHHH
Confidence 456788999999999988422 112244566778999999999999999999998877654222 223333
Q ss_pred Hh-----cccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHH-HhhHhhhhccccchHhh
Q psy9584 109 IH-----AGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQ-AGYQVENWTGSQYQKEY 182 (466)
Q Consensus 109 i~-----~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~-~~~l~~~~~g~~~~~e~ 182 (466)
.. ..+.+...-.++++.-....-+...+ + .+-|.-..+++....+.. +..... .|+|.--..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---------~-rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~ 148 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP---------R-RLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSN 148 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccch---------h-HhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHH
Confidence 33 12334555555655322221111111 0 011111122333322222 111121 366633333
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhhhhhHH
Q psy9584 183 LKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFF 262 (466)
Q Consensus 183 L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~~lk~F 262 (466)
|+-+|. ...++..+..++.......++-.. .+..+ +.-.=-|..-+|++.|+-.- |
T Consensus 149 lk~Ly~--------d~~K~~~i~~l~~~~~~~l~~~~~--~~~~~--------~~~~~~p~~~lw~~~~lAqh------y 204 (517)
T PF12569_consen 149 LKPLYK--------DPEKAAIIESLVEEYVNSLESNGS--FSNGD--------DEEKEPPSTLLWTLYFLAQH------Y 204 (517)
T ss_pred HHHHHc--------ChhHHHHHHHHHHHHHHhhcccCC--CCCcc--------ccccCCchHHHHHHHHHHHH------H
Confidence 333322 233345555555554433322111 01111 00011133346667666666 6
Q ss_pred HhcCchhh------HHhhhhcchhhHHHHHHHHHHHHHhCCCch---HHHHHHhhhCCCccccccchhhHHHHHHHhHHH
Q psy9584 263 GVTGTAGT------EVERLSQERELWTFANLNLAIVYLRGKREG---DFAALLERINPETLTSHSHSLRAAAYYVQGLQS 333 (466)
Q Consensus 263 lv~G~~~~------eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~---e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~ 333 (466)
.-+|++.. +|+.++ .+..=.++-.|-||...|.-. ++.+.+..+.+ ...+-+=|++=++
T Consensus 205 d~~g~~~~Al~~Id~aI~ht---Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aKy~------ 272 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHT---PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL---ADRYINSKCAKYL------ 272 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh---hhHHHHHHHHHHH------
Confidence 66776654 244332 222335555666666655322 23333333333 2222222333333
Q ss_pred hhhhcHHHHHHHHHHHHHh--hhhhhhhhHHHhH-HHHHHHHHHhcCChHHHHHhhHHHHHHhhcCC
Q psy9584 334 FFQARYNEAKRYLRETLKM--ANAEDLNRLTSCS-LVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~--a~~~~l~~l~~~~-l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~ 397 (466)
+..|++.+|.+..-.=-+- ...++++.+.|+= .+--|..|++.|++..|.+........-..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 4556666665554422221 3344555555544 34456666666666666666665555444443
No 136
>KOG1129|consensus
Probab=88.77 E-value=10 Score=39.56 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHH
Q psy9584 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQL 392 (466)
Q Consensus 323 a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~l 392 (466)
+-+-|--|+.+..-|.++-|++.+|=+|.-.+. ++.+|+-|+-+-.+.|+-.+|.-.+..|...
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~------h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ------HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcc------hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 334455566778889999999999988874333 3567889999999999999998888776543
No 137
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.61 E-value=1.6 Score=33.71 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=47.5
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCC
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~ 397 (466)
+.++++.+|.+++..++++... ....+...|.+++..|++.+|...+..++.....-+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 7889999999999999998655 444566789999999999999999999986655333
No 138
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.24 E-value=2.2 Score=41.48 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------ccccchHHHHHHHHHHHHHHHHhCCccchhHHHH
Q psy9584 13 KPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQ------SINAFDDVKFEAASVLAELYETQLLSNLSKPILR 86 (466)
Q Consensus 13 ~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~------~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~ 86 (466)
..+|...|.+.||+|++ +..-.|.+..+.+|++|...-+ ..+....-.....+++|+++.+.|++..|+..+.
T Consensus 111 ~~~~s~~A~l~LrlAWl-yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs 189 (214)
T PF09986_consen 111 KEKPSKKAGLCLRLAWL-YRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFS 189 (214)
T ss_pred CCCHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44788999999999998 3344445777777888766322 1111223345688899999999999999999998
Q ss_pred HHHHhhch
Q psy9584 87 RAIELSQH 94 (466)
Q Consensus 87 k~i~~s~~ 94 (466)
+.|+....
T Consensus 190 ~vi~~~~~ 197 (214)
T PF09986_consen 190 RVIGSKKA 197 (214)
T ss_pred HHHcCCCC
Confidence 88877653
No 139
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.73 E-value=9.4 Score=41.98 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q psy9584 363 SCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMHCNF 432 (466)
Q Consensus 363 ~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~ 432 (466)
+.++..+|-+.+..|+.++|+..+..|..+. |+ ..++.++.++|-..|++++|.+.+..-..+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE---MS----WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456677888888899999999999999888 33 358888999999999999998887665443
No 140
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.70 E-value=16 Score=34.65 Aligned_cols=119 Identities=16% Similarity=0.072 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHH
Q psy9584 60 VKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTR 139 (466)
Q Consensus 60 ~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~ 139 (466)
..-++.+-.|.-++..|++..|...+.+.+...... .|.-...|.+|.++...|||..|+..++.-+..-=.+. ..=.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~ 80 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADY 80 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhh
Confidence 344566777888899999999999999888776544 56777888999999999999999999998665544322 2235
Q ss_pred HHHHHHHHHHHhc------ccCccHHHHHHHHHhhHhhhhccccchH
Q psy9584 140 VLFLLSRCMLLLI------DKKVNDAVQLLTQAGYQVENWTGSQYQK 180 (466)
Q Consensus 140 ~lf~ls~~~~ll~------~~~~~~v~~al~~~~~l~~~~~g~~~~~ 180 (466)
+++.+..+..-+. ++|......++.....+++..+.+++..
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 5665555544331 4556666677888888888777766333
No 141
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.41 E-value=1.4 Score=29.01 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhHHHHHHhh
Q psy9584 364 CSLVLLGHIFLSLGNHRESMNMVTPAMQLAS 394 (466)
Q Consensus 364 ~~l~llg~i~l~~~~~~ea~~~~~~a~~lAk 394 (466)
-++..+|.+|...|++++|.+....++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3577888888888888888888888888765
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.88 E-value=2.5 Score=42.14 Aligned_cols=93 Identities=22% Similarity=0.121 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHH
Q psy9584 26 LGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQ 105 (466)
Q Consensus 26 la~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fq 105 (466)
+|+.+ ..-.|..+|..++.|+..+... |. ++.+.|+-+|.+.|.+..++.-+++++++..+.| ..+.+
T Consensus 106 ~gk~~-~~~g~~~~A~~~~rkA~~l~p~-----d~--~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p----~~~nN 173 (257)
T COG5010 106 QGKNQ-IRNGNFGEAVSVLRKAARLAPT-----DW--EAWNLLGAALDQLGRFDEARRAYRQALELAPNEP----SIANN 173 (257)
T ss_pred HHHHH-HHhcchHHHHHHHHHHhccCCC-----Ch--hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc----hhhhh
Confidence 44432 3456788999999998765433 33 5678999999999999999999999999997553 34557
Q ss_pred HHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 106 LAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 106 LA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
++-.+..+||+..|..+|.......
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8888999999999988777654443
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=86.46 E-value=2 Score=47.19 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=61.0
Q ss_pred HHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHH
Q psy9584 324 AAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403 (466)
Q Consensus 324 ~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~ql 403 (466)
-++.+.|+....++++.+|.+++++++.+. . .+.+++++|.++...|+.++|......|+.+.---|. ..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt---~~ 490 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT---LY 490 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---HH
Confidence 445778888899999999999999998865 2 4679999999999999999999999999988655554 45
Q ss_pred HHH
Q psy9584 404 WAS 406 (466)
Q Consensus 404 w~~ 406 (466)
|+-
T Consensus 491 ~~~ 493 (517)
T PRK10153 491 WIE 493 (517)
T ss_pred HHH
Confidence 554
No 144
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=86.32 E-value=7.2 Score=42.18 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=69.8
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly 413 (466)
+..|+.++|.+.+++++..-..+-..+ +.+|..++..|+.++|.+.+.+...==..-|+ ...+|++-|
T Consensus 351 ~~~nk~~~A~e~~~kal~l~P~~~~l~------~~~a~all~~g~~~eai~~L~~~~~~~p~dp~------~w~~LAqay 418 (484)
T COG4783 351 LEANKAKEAIERLKKALALDPNSPLLQ------LNLAQALLKGGKPQEAIRILNRYLFNDPEDPN------GWDLLAQAY 418 (484)
T ss_pred HHcCChHHHHHHHHHHHhcCCCccHHH------HHHHHHHHhcCChHHHHHHHHHHhhcCCCCch------HHHHHHHHH
Confidence 789999999999999999777664333 36799999999999999999887543222222 346899999
Q ss_pred HHcCCchHHHHHHHHHHHHHH
Q psy9584 414 KILNDPVRENEALQMHCNFSQ 434 (466)
Q Consensus 414 ~~~g~~~~~~e~~~~~~~~s~ 434 (466)
..+||..+|.+++.....++-
T Consensus 419 ~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 419 AELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHhCchHHHHHHHHHHHHhCC
Confidence 999999999988777665543
No 145
>KOG1125|consensus
Probab=86.14 E-value=1.1 Score=49.17 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=47.2
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccch
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLS 81 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~a 81 (466)
||+|++++|+-+|.+ .++-+|||-.| .-++-.++|-..+.||+.| .|+|.++|| -||..++-.|.|..|
T Consensus 449 aiDcf~~AL~v~Pnd---~~lWNRLGAtL-AN~~~s~EAIsAY~rALqL---qP~yVR~Ry----NlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND---YLLWNRLGATL-ANGNRSEEAISAYNRALQL---QPGYVRVRY----NLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHHHHHhcCCch---HHHHHHhhHHh-cCCcccHHHHHHHHHHHhc---CCCeeeeeh----hhhhhhhhhhhHHHH
Confidence 567777777666654 35667777442 4455566777777777665 455665554 456666666665444
Q ss_pred hHHHHHHHHhh
Q psy9584 82 KPILRRAIELS 92 (466)
Q Consensus 82 k~~l~k~i~~s 92 (466)
-..|-.+|.+-
T Consensus 518 ~~hlL~AL~mq 528 (579)
T KOG1125|consen 518 VKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhh
Confidence 44444444444
No 146
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.75 E-value=1.4 Score=28.73 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 101 RLIFQLAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 101 ~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
..++.+|.++...|+|+.|++.+++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 356678888888888888888888887654
No 147
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.30 E-value=3.2 Score=34.27 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=56.8
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhhhhh-hhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMANAE-DLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a~~~-~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~ 399 (466)
.|+-.|.+++..+|.+..+.+|+-.... |-.++.+ .|..+|..-|+++++.+.+..=+.+|....|+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG----~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLG----YLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5677799999999999999999866654 4466666 67788899999999999999999999988775
No 148
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.69 E-value=9 Score=37.02 Aligned_cols=104 Identities=18% Similarity=0.114 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhh
Q psy9584 17 RVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSI 96 (466)
Q Consensus 17 ~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~ 96 (466)
..=+.+-|.+|+.. .+-.|.|.|+.+|+.++.. +.=+.+|-=+..-||++..+.|.++.+..+|...- .+
T Consensus 86 ~Ya~laaL~lAk~~-ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-----~~ 155 (207)
T COG2976 86 IYAVLAALELAKAE-VEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-----EE 155 (207)
T ss_pred HHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-----cc
Confidence 34466778888773 4567899999999987542 22335888899999999999999988877664332 33
Q ss_pred hhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 97 YWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 97 ~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
-|..+..-..++++...||-+.|...++++...-
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5777666678999999999999999999988763
No 149
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.60 E-value=2 Score=28.00 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=14.6
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhh
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMA 353 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a 353 (466)
-|...+.+|++++|++++++++++.
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3444466666666666666666654
No 150
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.59 E-value=7.6 Score=37.69 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=95.0
Q ss_pred cchhHHHhhc--C-CCChhHHHHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q psy9584 2 CIQCLQAVFN--F-KPPPRVEARTHLQLGNILL--TH--TKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYET 74 (466)
Q Consensus 2 ai~CLeAvl~--~-~~~p~~Ea~~rLrla~lL~--~~--T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~ 74 (466)
|=+|.-|.++ | +++|...=+.+-.++...- .+ .-+.++|-..+.-|+.-.+-.+.-.-.+.....-||++|..
T Consensus 51 CP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~ 130 (214)
T PF09986_consen 51 CPHCGYAAFEEDFEKLSPEQKEKIKENISSRWKPRDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD 130 (214)
T ss_pred CCCCCCcccccccccCCHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence 4468878874 3 3467666667777765421 22 23578888888888776654443444777888889999999
Q ss_pred hCCccchhHHHHHHHHhhc------h---hhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 75 QLLSNLSKPILRRAIELSQ------H---SIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 75 ~~~~~~ak~~l~k~i~~s~------~---~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.|+....+..+++|++... + ...=...+++.+|+++..-|+++.|.+.+...+..-.
T Consensus 131 ~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 131 LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 9998888889999888875 1 2334477888999999999999999988887765443
No 151
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=83.74 E-value=25 Score=38.05 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=105.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHh--C--CccchhHHHHHHHHhhchhhhhHHHHHHHH
Q psy9584 32 THTKNIDLARNHLEQAWHLSQSINA-FDDVKFEAASVLAELYETQ--L--LSNLSKPILRRAIELSQHSIYWHCRLIFQL 106 (466)
Q Consensus 32 ~~T~N~~~A~~hLeka~~L~~~~~~-~~d~K~~a~slLa~~y~~~--~--~~~~ak~~l~k~i~~s~~~~~W~~~~~fqL 106 (466)
=++.|-+.+-..|.+|.. ...+++ +-.+-.-++++...-+.-. + +.+.+..+|....+.+-+...| +|..
T Consensus 199 GF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf----l~~~ 273 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF----LFFE 273 (468)
T ss_pred CcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH----HHHH
Confidence 377899999999998754 222221 2223333333333333322 1 3344777777777777666555 4578
Q ss_pred HHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHh-cccCccHHHHHHHHHhhHhh--hhccccchHhhH
Q psy9584 107 AQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLL-IDKKVNDAVQLLTQAGYQVE--NWTGSQYQKEYL 183 (466)
Q Consensus 107 A~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll-~~~~~~~v~~al~~~~~l~~--~~~g~~~~~e~L 183 (466)
|.++..+||.+.|++.++.+.+...+-..-..-++|-++-+++.+ .|+. +......+.+ +| +
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~------A~~~f~~L~~~s~W--------S- 338 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE------AAEYFLRLLKESKW--------S- 338 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH------HHHHHHHHHhcccc--------H-
Confidence 999999999999999999988766665555566677777777655 3322 2233344443 23 1
Q ss_pred HHHHHHHHHHhhhhhhhh-------hhhhHHHHHHHHHHHHhcC
Q psy9584 184 KVFFLVLQVCHYLMAGQV-------KSVKPCLKQLQQSILTIMQ 220 (466)
Q Consensus 184 ~~~~~~L~i~~~l~~g~v-------~~~k~~lkqLq~~~q~i~~ 220 (466)
+.+|.-+.-||+++.|+. +.+..++++.-...+.+..
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 445555679999999998 6666777766666554333
No 152
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=83.25 E-value=3.8 Score=44.09 Aligned_cols=69 Identities=16% Similarity=0.003 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHH
Q psy9584 60 VKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 60 ~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~ 129 (466)
--.++++.||..|+..|.++.|...++++|++.-+... ....+.++|.+|...|+++.|++.|+.++++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667788888999999999999999999999865421 1123357999999999999999999999886
No 153
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=83.08 E-value=80 Score=34.87 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=72.1
Q ss_pred HHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHH------------
Q psy9584 325 AYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQL------------ 392 (466)
Q Consensus 325 ~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~l------------ 392 (466)
.+|.-|-+.-+.|++++|..|+.+++...... ...+++-|.|+-+.|+.++|.+.+..|+.|
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL------VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 33444555557899999999999888865442 235668889999999988888766665543
Q ss_pred ---------------hhcCCCh----------hHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHh
Q psy9584 393 ---------------ASKIPDV----------HVQLWASAILKDLYKILNDPVRENEALQMHCNFSQMLLKDHF 441 (466)
Q Consensus 393 ---------------AkK~~D~----------~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~s~~l~~~~~ 441 (466)
+++.-.. .-.+|=--=-.+-|.+.||+..|...+..-...=+....|||
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQf 343 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQF 343 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 2221111 133555555667777788888887766665555555556654
No 154
>KOG0550|consensus
Probab=82.85 E-value=10 Score=40.49 Aligned_cols=119 Identities=18% Similarity=0.114 Sum_probs=91.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccccchHH--------HHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhh
Q psy9584 27 GNILLTHTKNIDLARNHLEQAWHLSQSINAFDDV--------KFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYW 98 (466)
Q Consensus 27 a~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~--------K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W 98 (466)
=..+++|++|.+.|-+|.++|+.|- |...+. +++.--.=+.-.++.|.+..+-.....+|.+.-+++.=
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld---pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD---PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC---hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3567899999999999999997763 222222 23333344556667777777888889999999877777
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhc
Q psy9584 99 HCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLI 152 (466)
Q Consensus 99 ~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~ 152 (466)
...++..+|.+...-|.-..|++-++.+++ +++.++..+-.-+++++.|.
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999989888877655 47788998888888888773
No 155
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.72 E-value=9.5 Score=38.67 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHhhhhhHHHhcCchhh--HHhhhhcchhhHHHHHHHHHHHHHhCC--CchHHHHHHhhhCCCcccccc
Q psy9584 243 KEHLYVVVYLVTVIGHLKFFGVTGTAGT--EVERLSQERELWTFANLNLAIVYLRGK--REGDFAALLERINPETLTSHS 318 (466)
Q Consensus 243 k~~l~aLvyl~tv~~~lk~Flv~G~~~~--eAl~~~~~~~~~~~~~lNlai~Yl~~~--~~~e~~~~l~~i~~~~~~~~~ 318 (466)
+..+...+|+... ++-+|++.. ..+....++.+.++..+ | .|+... ++....++-+.+....- ..+
T Consensus 32 ~~~~e~~~~~~Rs------~iAlg~~~~vl~ei~~~~~~~l~av~~l--a-~y~~~~~~~e~~l~~l~~~~~~~~~-~~~ 101 (290)
T PF04733_consen 32 ENKLERDFYQYRS------YIALGQYDSVLSEIKKSSSPELQAVRLL--A-EYLSSPSDKESALEELKELLADQAG-ESN 101 (290)
T ss_dssp HHHHHHHHHHHHH------HHHTT-HHHHHHHS-TTSSCCCHHHHHH--H-HHHCTSTTHHCHHHHHHHCCCTS----CH
T ss_pred hhHHHHHHHHHHH------HHHcCChhHHHHHhccCCChhHHHHHHH--H-HHHhCccchHHHHHHHHHHHHhccc-ccc
Confidence 3455556666666 677777654 33333445666554222 2 444432 22224343343333211 111
Q ss_pred chhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCC
Q psy9584 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPD 398 (466)
Q Consensus 319 ~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D 398 (466)
..+..+.|+..+..|++++|++.+++. +... ...+.=++++..+..+.|+++++...++ ..|
T Consensus 102 ----~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE----~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD 163 (290)
T PF04733_consen 102 ----EIVQLLAATILFHEGDYEEALKLLHKG-------GSLE----LLALAVQILLKMNRPDLAEKELKNMQQI---DED 163 (290)
T ss_dssp ----HHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHH----HHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCC
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHcc-------Cccc----HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc
Confidence 112233444446778888888877654 1111 1224556778888888888888775544 344
Q ss_pred hhHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy9584 399 VHVQLWASAILKDLYKILNDPVRENEAL 426 (466)
Q Consensus 399 ~~~qlw~~~lL~~ly~~~g~~~~~~e~~ 426 (466)
..+..-+.+.+ .++.--.++++|.-.|
T Consensus 164 ~~l~qLa~awv-~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 164 SILTQLAEAWV-NLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHHHHHHHHHH-HHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHH-HHHhCchhHHHHHHHH
Confidence 44433333333 3333333555554433
No 156
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=82.60 E-value=28 Score=40.95 Aligned_cols=64 Identities=22% Similarity=0.144 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.|...||.||-+.|.+..+..+..+.++.-.++ ...+..+|-.++.+ |.+.|.+++.+++..--
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n----~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDN----PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999998655 55666788888778 99999999999877644
No 157
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.43 E-value=3 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhHHHHHHh
Q psy9584 364 CSLVLLGHIFLSLGNHRESMNMVTPAMQLA 393 (466)
Q Consensus 364 ~~l~llg~i~l~~~~~~ea~~~~~~a~~lA 393 (466)
.++..+|.+|+..|++++|.+..+.|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456778888888888888888888877764
No 158
>KOG0550|consensus
Probab=82.40 E-value=62 Score=34.80 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=76.3
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHH
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAI 408 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~l 408 (466)
+|=.+|.+|+|.+|-+.|.++|.++..+ ..-.+-.|.-.+.+..++|+.++|..-.. .|-+|.+. -+|+...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgrl~eaisdc~----~Al~iD~s--yikall~ 326 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGRLREAISDCN----EALKIDSS--YIKALLR 326 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCCchhhhhhhh----hhhhcCHH--HHHHHHH
Confidence 5666799999999999999999998773 33334445577888899999999876655 45556654 6888888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHH
Q psy9584 409 LKDLYKILNDPVRENEALQMHCNFSQM 435 (466)
Q Consensus 409 L~~ly~~~g~~~~~~e~~~~~~~~s~~ 435 (466)
=.+.|...++.+.|-|.++.-+..+..
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 889999999999988877766655444
No 159
>KOG3785|consensus
Probab=82.29 E-value=72 Score=33.82 Aligned_cols=90 Identities=19% Similarity=0.108 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHhhhCCCcc--ccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHH
Q psy9584 285 ANLNLAIVYLRGKREGDFAALLERINPETL--TSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLT 362 (466)
Q Consensus 285 ~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~--~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~ 362 (466)
-++|+|-.|+.+|...+..+++-+|+.+.+ ..-+.++=|-. | ...+++.-|-..+-++-.-+..-.+.+++
T Consensus 395 Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC-y------i~nkkP~lAW~~~lk~~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 395 FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC-Y------IRNKKPQLAWDMMLKTNTPSERFSLLQLI 467 (557)
T ss_pred hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH-H------HhcCCchHHHHHHHhcCCchhHHHHHHHH
Confidence 478999999998877777788888876544 22334442333 4 56788888887776666656666777888
Q ss_pred HhHHHHHHHHHHhcCChHH
Q psy9584 363 SCSLVLLGHIFLSLGNHRE 381 (466)
Q Consensus 363 ~~~l~llg~i~l~~~~~~e 381 (466)
+.--...+..|+..+-+.+
T Consensus 468 An~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred HHHHHHHHHHHHHHHhhhH
Confidence 8777888888876644443
No 160
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.88 E-value=43 Score=33.38 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHHhC-CccchhHHHHHHHHh----hc------hhhhhHHH
Q psy9584 34 TKNIDLARNHLEQAWHLS-QSINAFDDVKFEAASVLAELYETQL-LSNLSKPILRRAIEL----SQ------HSIYWHCR 101 (466)
Q Consensus 34 T~N~~~A~~hLeka~~L~-~~~~~~~d~K~~a~slLa~~y~~~~-~~~~ak~~l~k~i~~----s~------~~~~W~~~ 101 (466)
-+|.+.|+..++|+=.+. ..-+...+.-.+..+..|.-....+ ++..+...|+++.++ .. +.....++
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 478999999999997766 4445566777888888888888888 888899999998888 32 34467777
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhHHHHHH-HhcChHHHHHHHHHHH
Q psy9584 102 LIFQLAQIHAGEKDYELASSLLGVGVDYAN-ISNAQYTRVLFLLSRC 147 (466)
Q Consensus 102 ~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~-~~~d~~~~~lf~ls~~ 147 (466)
.+-.||.++..-+++++..+. ...++..+ +.++ +..+++.-.+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka-~~~l~~l~~e~~~-~~~~~~L~l~i 130 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKA-LNALRLLESEYGN-KPEVFLLKLEI 130 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHH-HHHHHHHHHhCCC-CcHHHHHHHHH
Confidence 777899999777777755553 33334444 4444 34444433333
No 161
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=81.23 E-value=33 Score=39.18 Aligned_cols=52 Identities=6% Similarity=0.031 Sum_probs=28.7
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQ 391 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~ 391 (466)
...++++||....+..+..+.++- .++..+|...-.+|.++||..+-..++.
T Consensus 131 ~~~~~~eeA~~~~~~~l~~~p~~~------~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSGGSSSA------REILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHhccHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 556666666666666665444432 2334555555566666666666555554
No 162
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.62 E-value=11 Score=31.19 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHH
Q psy9584 38 DLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYE 117 (466)
Q Consensus 38 ~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~ 117 (466)
+.|+.+.|+|+.| | .++.-..|.+.-+++++-..+.+ --++.+=-|+++|+.-|.|.
T Consensus 4 ~~ak~~ie~GlkL---------------------Y-~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr 60 (80)
T PF10579_consen 4 DQAKQQIEKGLKL---------------------Y-HQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYR 60 (80)
T ss_pred HHHHHHHHHHHHH---------------------h-ccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHH
Confidence 5678888887544 3 33445667788888888887653 33444445899999999999
Q ss_pred HHHHHHHhHHHHHHHhcCh
Q psy9584 118 LASSLLGVGVDYANISNAQ 136 (466)
Q Consensus 118 ~A~~~L~~g~~~A~~~~d~ 136 (466)
.++++--.=+++|++.+||
T Consensus 61 ~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 61 EMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHHHHHccCC
Confidence 9999999999999998887
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.61 E-value=15 Score=37.47 Aligned_cols=99 Identities=21% Similarity=0.133 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhC-C--ccchhHHHHHHHHhhchhhh
Q psy9584 21 RTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQL-L--SNLSKPILRRAIELSQHSIY 97 (466)
Q Consensus 21 ~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~-~--~~~ak~~l~k~i~~s~~~~~ 97 (466)
+.-..||.+++ .+.|.+.|...+.+|+-|.-. .. +....+|++++.++ + .+.++.++++++..-.+.
T Consensus 157 egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~---n~----~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-- 226 (287)
T COG4235 157 EGWDLLGRAYM-ALGRASDALLAYRNALRLAGD---NP----EILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-- 226 (287)
T ss_pred hhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCC---CH----HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc--
Confidence 34456888854 466789999999999988655 22 45567888777755 3 477889999999988655
Q ss_pred hHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 98 WHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 98 W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
-+.++.||..+..+|||..|+...++-++..-
T Consensus 227 --iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 227 --IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 67788899999999999999999988776654
No 164
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.61 E-value=3.5 Score=27.11 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=23.5
Q ss_pred HHHHHhHHHhhhhcHHHHHHHHHHHHHhhh
Q psy9584 325 AYYVQGLQSFFQARYNEAKRYLRETLKMAN 354 (466)
Q Consensus 325 ~~yv~~~~~~~~~~~~eAk~~lre~lk~a~ 354 (466)
++|-.|...+..+++.+|..++++++++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 345566666899999999999999999764
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=79.79 E-value=14 Score=34.63 Aligned_cols=93 Identities=10% Similarity=0.103 Sum_probs=72.2
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~ 406 (466)
|-.|...|.+|++++|.+++|=..-...-+ .+ ...=||-.+-..+++++|...=.-|.-+....|.++
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~------ 108 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PD----YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV------ 108 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc------
Confidence 777888899999999999998655433322 22 345688888899999999999888888888777762
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q psy9584 407 AILKDLYKILNDPVRENEALQMHCN 431 (466)
Q Consensus 407 ~lL~~ly~~~g~~~~~~e~~~~~~~ 431 (466)
--..+.|.+.||+.+|.+.++.-..
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2346889999999999988776554
No 166
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.45 E-value=12 Score=37.53 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=70.8
Q ss_pred HHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHH
Q psy9584 326 YYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWA 405 (466)
Q Consensus 326 ~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~ 405 (466)
.|=.|+-.+.-|+|.+|..-+++-++ .=..+..++.+...||..++..|+++.|......+.. ..|+...-=-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~---~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIK---KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence 37777788999999999999998887 4466788999999999999999999999887766544 55554211223
Q ss_pred HHHHHHHHHHcCCchHHHHH
Q psy9584 406 SAILKDLYKILNDPVRENEA 425 (466)
Q Consensus 406 ~~lL~~ly~~~g~~~~~~e~ 425 (466)
.--|.++....|+.+.|...
T Consensus 218 llKlg~~~~~l~~~d~A~at 237 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACAT 237 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHH
Confidence 34456677778888888443
No 167
>KOG1174|consensus
Probab=77.43 E-value=1.1e+02 Score=33.08 Aligned_cols=251 Identities=18% Similarity=0.160 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhh-chhhhhHHHHH
Q psy9584 25 QLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELS-QHSIYWHCRLI 103 (466)
Q Consensus 25 rla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s-~~~~~W~~~~~ 103 (466)
.+|++++.-.+| ++|...+|++..+ +-|. ..+--+-|-+..+.|.+...-++.-.-...+ .+...|.
T Consensus 237 ~lak~~~~~Gdn-~~a~~~Fe~~~~~----dpy~---i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf---- 304 (564)
T KOG1174|consen 237 ALGKCLYYNGDY-FQAEDIFSSTLCA----NPDN---VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF---- 304 (564)
T ss_pred HHhhhhhhhcCc-hHHHHHHHHHhhC----Chhh---hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh----
Confidence 356665554444 4566777776432 1121 1111122333444554443333333333333 2334453
Q ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhH
Q psy9584 104 FQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYL 183 (466)
Q Consensus 104 fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L 183 (466)
--+++...++||..|+.+-++++..-.++ ++. .+.++-++++-..+.+..-+...+-.+-+ --|
T Consensus 305 -V~~~~l~~~K~~~rAL~~~eK~I~~~~r~----~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~Lap---------~rL 368 (564)
T KOG1174|consen 305 -VHAQLLYDEKKFERALNFVEKCIDSEPRN----HEA--LILKGRLLIALERHTQAVIAFRTAQMLAP---------YRL 368 (564)
T ss_pred -hhhhhhhhhhhHHHHHHHHHHHhccCccc----chH--HHhccHHHHhccchHHHHHHHHHHHhcch---------hhH
Confidence 34677788999999999999988776533 222 33444444444434332222222222211 134
Q ss_pred HHHHHHHHHHhhhhhhhhhhh----hHHHHHHHHHHHHhcCCCCCCCCccCCCCCCcccccCcchhHHHHHHHHHHhh--
Q psy9584 184 KVFFLVLQVCHYLMAGQVKSV----KPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIG-- 257 (466)
Q Consensus 184 ~~~~~~L~i~~~l~~g~v~~~----k~~lkqLq~~~q~i~~~~w~~~~~~~~~~~~~~f~WLpk~~l~aLvyl~tv~~-- 257 (466)
+.|-=. |=|||..|..|.+ ..-++-++++-++++ -+++-+|
T Consensus 369 ~~Y~GL--~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt-------------------------------L~g~~V~~~ 415 (564)
T KOG1174|consen 369 EIYRGL--FHSYLAQKRFKEANALANWTIRLFQNSARSLT-------------------------------LFGTLVLFP 415 (564)
T ss_pred HHHHHH--HHHHHhhchHHHHHHHHHHHHHHhhcchhhhh-------------------------------hhcceeecc
Confidence 444332 4478888887654 566677777666533 2222222
Q ss_pred ------hhhHHHhcCchhhHHhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHHHhh---hCCCccccccchhhHHHHHH
Q psy9584 258 ------HLKFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGDFAALLER---INPETLTSHSHSLRAAAYYV 328 (466)
Q Consensus 258 ------~lk~Flv~G~~~~eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l~~---i~~~~~~~~~~~L~a~~~yv 328 (466)
|.|-|+.-|. ++ +|.-.. +-+-+|-+..+-++..+...++++ +.|.+ +-|..=|-+ +
T Consensus 416 dp~~rEKAKkf~ek~L------~~--~P~Y~~-AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---~LH~~Lgd~-~- 481 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSL------KI--NPIYTP-AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV---NLHNHLGDI-M- 481 (564)
T ss_pred CchhHHHHHHHHHhhh------cc--CCccHH-HHHHHHHHHHhhCccchHHHHHHHHHhhcccc---HHHHHHHHH-H-
Confidence 3444443332 21 232222 234457888886666665566643 22321 111221333 3
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhhhh
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMANA 355 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a~~ 355 (466)
--+|.|++|..+|..+|.+...
T Consensus 482 -----~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 482 -----RAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred -----HHhhhHHHHHHHHHHHHhcCcc
Confidence 4689999999999999986543
No 168
>KOG1585|consensus
Probab=76.72 E-value=75 Score=32.11 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccch-----------------
Q psy9584 19 EARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLS----------------- 81 (466)
Q Consensus 19 Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~a----------------- 81 (466)
.|+..|+=|.--++-..|.=+|-.|.|+|..|++.+..+.|+- .-+---+..|...|....+
T Consensus 49 KakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvv-dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd 127 (308)
T KOG1585|consen 49 KAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVV-DLYEKASELYVECGSPDTAAMALEKAAKALENVKPD 127 (308)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHH
Confidence 3444555555555555555555555565555555555444321 1111123345555544333
Q ss_pred --hHHHHHHHHhhc--hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCcc
Q psy9584 82 --KPILRRAIELSQ--HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVN 157 (466)
Q Consensus 82 --k~~l~k~i~~s~--~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~ 157 (466)
.++..++++.-. +...--+.|+-+++.++..-+-|..|-..+.+-...+-+...-....=.-++..+|+|-..|-.
T Consensus 128 ~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv 207 (308)
T KOG1585|consen 128 DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYV 207 (308)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHH
Confidence 333344333332 2223344555556666655555655555555544555444333333223333334444222222
Q ss_pred HHHHHHHHHhhHh
Q psy9584 158 DAVQLLTQAGYQV 170 (466)
Q Consensus 158 ~v~~al~~~~~l~ 170 (466)
..+.+++.+.|+.
T Consensus 208 ~aekc~r~~~qip 220 (308)
T KOG1585|consen 208 QAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHhcchhcCc
Confidence 2344444444433
No 169
>KOG2376|consensus
Probab=76.67 E-value=1.4e+02 Score=33.64 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHHhcccccHHHHHHHHHhHHHHHHHhcCh--HHHHHHHHHHHHH-Hhcc---cCccHHHHHHHHHhhHhhhhccccc
Q psy9584 105 QLAQIHAGEKDYELASSLLGVGVDYANISNAQ--YTRVLFLLSRCML-LLID---KKVNDAVQLLTQAGYQVENWTGSQY 178 (466)
Q Consensus 105 qLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~--~~~~lf~ls~~~~-ll~~---~~~~~v~~al~~~~~l~~~~~g~~~ 178 (466)
..|++....++|+.|+.+++..+.--..--|. .+-++++.+...+ .|+. ...+.-+.++|.+..+++. |.
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~--gk-- 190 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN--GK-- 190 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc--cc--
Confidence 46999999999999999999876543322222 2223333333333 3332 2334456778888777775 44
Q ss_pred hHhhHHHHHHHHHHH
Q psy9584 179 QKEYLKVFFLVLQVC 193 (466)
Q Consensus 179 ~~e~L~~~~~~L~i~ 193 (466)
|+++++.+-..++||
T Consensus 191 y~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 191 YNQAIELLEKALRIC 205 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888888888
No 170
>KOG3060|consensus
Probab=76.60 E-value=38 Score=34.22 Aligned_cols=132 Identities=24% Similarity=0.263 Sum_probs=85.5
Q ss_pred cchhHHHhh-cCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------H-HHhcc---------cc
Q psy9584 2 CIQCLQAVF-NFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAW--------------H-LSQSI---------NA 56 (466)
Q Consensus 2 ai~CLeAvl-~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~--------------~-L~~~~---------~~ 56 (466)
|-+|....- +|+-++|++- +-..+++-|.|.++|..+++.-+ . +-.++ +.
T Consensus 71 Aq~C~~~L~~~fp~S~RV~~-----lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~ 145 (289)
T KOG3060|consen 71 AQKCINQLRDRFPGSKRVGK-----LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNE 145 (289)
T ss_pred HHHHHHHHHHhCCCChhHHH-----HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 557887766 5655888864 44567799999999999988631 1 11111 23
Q ss_pred chH---HHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHH-HHHHHhcccc---cHHHHHHHHHhHHHH
Q psy9584 57 FDD---VKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF-QLAQIHAGEK---DYELASSLLGVGVDY 129 (466)
Q Consensus 57 ~~d---~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~f-qLA~i~~~~~---D~~~A~~~L~~g~~~ 129 (466)
|.| .--+|-.-||++|...|.++.|---+...+=+.-+.| ++| .+|+++.++| ++..|.+++..++++
T Consensus 146 YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~-----l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 146 YLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP-----LYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333 2347788899999999988877666666555554442 333 5788886665 455666677666665
Q ss_pred HHHhcChHHHHHHHHHHH
Q psy9584 130 ANISNAQYTRVLFLLSRC 147 (466)
Q Consensus 130 A~~~~d~~~~~lf~ls~~ 147 (466)
+- +.++.+|-|..+
T Consensus 221 ~~----~~~ral~GI~lc 234 (289)
T KOG3060|consen 221 NP----KNLRALFGIYLC 234 (289)
T ss_pred Ch----HhHHHHHHHHHH
Confidence 44 667777766655
No 171
>KOG0553|consensus
Probab=75.97 E-value=8.1 Score=39.45 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=59.6
Q ss_pred cchhHHHhhcCCC----ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCC
Q psy9584 2 CIQCLQAVFNFKP----PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLL 77 (466)
Q Consensus 2 ai~CLeAvl~~~~----~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~ 77 (466)
||+|+..+++..| -=..+|-++.+||.- +.||.=|++--.++.--..+++-|+..|.-.|.
T Consensus 100 Av~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~---------------~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 100 AVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY---------------EDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHhcch---------------HHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 6777766666554 234566677776643 233333333333666777788888888888888
Q ss_pred ccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhccccc
Q psy9584 78 SNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKD 115 (466)
Q Consensus 78 ~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D 115 (466)
+..|...++|++++--++..| .-.+..|+.-..+.+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~--K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESY--KSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHH--HHHHHHHHHHhcCCC
Confidence 877777788888887666533 333344555444444
No 172
>KOG2076|consensus
Probab=75.85 E-value=12 Score=43.32 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=65.1
Q ss_pred HhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHH
Q psy9584 329 QGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAI 408 (466)
Q Consensus 329 ~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~l 408 (466)
.|-++|-.|++.+|.+.+.|.++.++.. ..++-.||.||-..|+.+.+-+...-|-++=.|.++ +|. .
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~--~ 212 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRN------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWK--R 212 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccc------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHH--H
Confidence 5556688899999999999999977654 457889999999999999999999988888888775 665 3
Q ss_pred HHHHHHHcCCchHH
Q psy9584 409 LKDLYKILNDPVRE 422 (466)
Q Consensus 409 L~~ly~~~g~~~~~ 422 (466)
+.|+-..+|+..+|
T Consensus 213 ladls~~~~~i~qA 226 (895)
T KOG2076|consen 213 LADLSEQLGNINQA 226 (895)
T ss_pred HHHHHHhcccHHHH
Confidence 44555555555555
No 173
>KOG0624|consensus
Probab=74.64 E-value=71 Score=33.76 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH------------HHhCCccchhHHHHHH
Q psy9584 21 RTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELY------------ETQLLSNLSKPILRRA 88 (466)
Q Consensus 21 ~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y------------~~~~~~~~ak~~l~k~ 88 (466)
-+|+|=|.+|+.-. ..++|+.-+.+.+. . +.....--++++-|+-+- .-.|+...+...+.+.
T Consensus 107 ~ARiQRg~vllK~G-ele~A~~DF~~vl~---~-~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 107 AARIQRGVVLLKQG-ELEQAEADFDQVLQ---H-EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHHHHhchhhhhcc-cHHHHHHHHHHHHh---c-CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 36778888877643 46777777666433 1 113344455666555432 2234556677777777
Q ss_pred HHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhh
Q psy9584 89 IELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGY 168 (466)
Q Consensus 89 i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~ 168 (466)
||+. .|-..|+-..|..+..+|+...|++-+...+.+ ....++.+|-+|++..-+ +.++.+|+.+.+
T Consensus 182 lEi~----~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~ykis~L~Y~v-----gd~~~sL~~iRE 248 (504)
T KOG0624|consen 182 LEIQ----PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHYKISQLLYTV-----GDAENSLKEIRE 248 (504)
T ss_pred HhcC----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhh-----hhHHHHHHHHHH
Confidence 7776 899999999999999999999999888765554 445578889888887433 223444444433
Q ss_pred HhhhhccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q psy9584 169 QVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWP 224 (466)
Q Consensus 169 l~~~~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~ 224 (466)
-.+- +|.++.+..+|-.+=+|. |+|....+.|....|+
T Consensus 249 CLKl---dpdHK~Cf~~YKklkKv~---------------K~les~e~~ie~~~~t 286 (504)
T KOG0624|consen 249 CLKL---DPDHKLCFPFYKKLKKVV---------------KSLESAEQAIEEKHWT 286 (504)
T ss_pred HHcc---CcchhhHHHHHHHHHHHH---------------HHHHHHHHHHhhhhHH
Confidence 3322 444555655555533343 5555555555554443
No 174
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.22 E-value=6.5 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Q psy9584 101 RLIFQLAQIHAGEKDYELASSLLGVGVDYANIS 133 (466)
Q Consensus 101 ~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~ 133 (466)
..+..||.++...|++..|..+++.++++.++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 345678888888888888888888888887764
No 175
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=74.15 E-value=80 Score=29.82 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=55.8
Q ss_pred HHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh
Q psy9584 324 AAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 324 ~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~ 399 (466)
...|-.|...+.+|+|.+|.+.|.+..+.-. .+.....+.+.+|..++..|++.+|......-+..--++|.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYP---NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 3447788888999999999999999887533 355677788999999999999999998888777665555554
No 176
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.33 E-value=4.4 Score=26.01 Aligned_cols=28 Identities=21% Similarity=0.039 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCccchhHHHHHHHHh
Q psy9584 64 AASVLAELYETQLLSNLSKPILRRAIEL 91 (466)
Q Consensus 64 a~slLa~~y~~~~~~~~ak~~l~k~i~~ 91 (466)
|.+.+|++|...|+++.++..+++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5566666777666666666666665543
No 177
>KOG1497|consensus
Probab=73.01 E-value=1.3e+02 Score=31.57 Aligned_cols=88 Identities=16% Similarity=0.065 Sum_probs=56.5
Q ss_pred hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHH-HHHHhcC--hHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHh
Q psy9584 94 HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVD-YANISNA--QYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQV 170 (466)
Q Consensus 94 ~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~-~A~~~~d--~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~ 170 (466)
.+..-.+..+++||++|-.+++|..|.+.|..+=. --.+..| ..+.....++++ +|...+..+.+.-+|++.-+.
T Consensus 97 sfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarl--yLe~~d~veae~~inRaSil~ 174 (399)
T KOG1497|consen 97 SFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARL--YLEDDDKVEAEAYINRASILQ 174 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHhh
Confidence 56777899999999999999999999998865311 1122222 222333333332 455555555566788887666
Q ss_pred hhhccccchHhhHHHHHH
Q psy9584 171 ENWTGSQYQKEYLKVFFL 188 (466)
Q Consensus 171 ~~~~g~~~~~e~L~~~~~ 188 (466)
-.- .++.|.+-|+
T Consensus 175 a~~-----~Ne~Lqie~k 187 (399)
T KOG1497|consen 175 AES-----SNEQLQIEYK 187 (399)
T ss_pred hcc-----cCHHHHHHHH
Confidence 442 3578888877
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=72.99 E-value=44 Score=36.19 Aligned_cols=68 Identities=21% Similarity=0.101 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhh
Q psy9584 20 ARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELS 92 (466)
Q Consensus 20 a~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s 92 (466)
+..++.+|..|+. -.++++|...+++|+.+- +++.+. -.+++.+|-+|...|..+.|...++++|+++
T Consensus 75 a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~---Pd~aeA-~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFS-KGRVKDALAQFETALELN---PNPDEA-QAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC---CCchHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4567778877655 588999999999998872 222111 1468999999999999999999999999985
No 179
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.95 E-value=2e+02 Score=33.81 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=106.9
Q ss_pred HHhhcCCCChhHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhCCccchhH
Q psy9584 7 QAVFNFKPPPRVEARTHLQLGNI-LLTHTKNIDLARNHLEQAWHLSQSI--NAFDDVKFEAASVLAELYETQLLSNLSKP 83 (466)
Q Consensus 7 eAvl~~~~~p~~Ea~~rLrla~l-L~~~T~N~~~A~~hLeka~~L~~~~--~~~~d~K~~a~slLa~~y~~~~~~~~ak~ 83 (466)
++.++-=|.|...=.-+|.|-.. +...-.-+++|++.+++.-.-.+.. ..-.+...+.+-+=|.+-...|....+..
T Consensus 400 ~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~ 479 (894)
T COG2909 400 LAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAED 479 (894)
T ss_pred HHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33333334455544445555422 2355677999999999987644432 23557778888888899888998888888
Q ss_pred HHHHHHHhhchhhhhHHHH--HHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhc
Q psy9584 84 ILRRAIELSQHSIYWHCRL--IFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLI 152 (466)
Q Consensus 84 ~l~k~i~~s~~~~~W~~~~--~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~ 152 (466)
+.+.+++..-.. .|..+. +.-++++++..||+..|..+.+..-..|++++..+..++..+-+..++..
T Consensus 480 lar~al~~L~~~-~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 480 LARLALVQLPEA-AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred HHHHHHHhcccc-cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 888888776432 333333 33579999999999999999999999999999999999999999888774
No 180
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=72.90 E-value=42 Score=31.47 Aligned_cols=116 Identities=11% Similarity=0.046 Sum_probs=82.4
Q ss_pred hHHHhhcCCC--ChhHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccch
Q psy9584 5 CLQAVFNFKP--PPRVEA-RTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLS 81 (466)
Q Consensus 5 CLeAvl~~~~--~p~~Ea-~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~a 81 (466)
-|++=++... .-..|+ +++..+|..+ ...-+.+.|..+++++..-| .-..-+.++...+-++..-.|++..+
T Consensus 18 ~Le~elk~~~~n~~kesir~~~~~l~~~~-~~~Gd~~~A~k~y~~~~~~~----~~~~~~id~~l~~irv~i~~~d~~~v 92 (177)
T PF10602_consen 18 KLEAELKDAKSNLGKESIRMALEDLADHY-CKIGDLEEALKAYSRARDYC----TSPGHKIDMCLNVIRVAIFFGDWSHV 92 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4555554311 233333 4677888774 44558999999999976532 23468999999999999999999999
Q ss_pred hHHHHHHHHhhchhhhhHHHHHHHHHH--HhcccccHHHHHHHHHh
Q psy9584 82 KPILRRAIELSQHSIYWHCRLIFQLAQ--IHAGEKDYELASSLLGV 125 (466)
Q Consensus 82 k~~l~k~i~~s~~~~~W~~~~~fqLA~--i~~~~~D~~~A~~~L~~ 125 (466)
...+.++-.+-.....|..+-.+..++ .+...|||..|.+.+=.
T Consensus 93 ~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 93 EKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 999999877776555688888776533 33678999988665544
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.80 E-value=7.1 Score=27.59 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhhchh
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELSQHS 95 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~ 95 (466)
++...||+.|...|+++.+..+++++++..-++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456788999999999888999999988887533
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.85 E-value=17 Score=36.60 Aligned_cols=85 Identities=14% Similarity=-0.004 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhccccchH--HHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccc
Q psy9584 37 IDLARNHLEQAWHLSQSINAFDD--VKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEK 114 (466)
Q Consensus 37 ~~~A~~hLeka~~L~~~~~~~~d--~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~ 114 (466)
++.|+.-+..- +.+|++ .--.|++-|+++++.+|.+..+..++...+...-.. .|--.-+|.||.+....|
T Consensus 157 y~~A~~~F~~f------i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-~KApdallKlg~~~~~l~ 229 (262)
T COG1729 157 YAEAEQAFQAF------IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-PKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHHHHHHHH------HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHhc
Confidence 67777776654 233554 445789999999999999988888888888866444 566788899999999999
Q ss_pred cHHHHHHHHHhHHH
Q psy9584 115 DYELASSLLGVGVD 128 (466)
Q Consensus 115 D~~~A~~~L~~g~~ 128 (466)
+-+.|+.+|+.-..
T Consensus 230 ~~d~A~atl~qv~k 243 (262)
T COG1729 230 NTDEACATLQQVIK 243 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987543
No 183
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=71.67 E-value=3.9 Score=28.20 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.3
Q ss_pred hhHhhhhccccchHhhHHHHHHHHH
Q psy9584 167 GYQVENWTGSQYQKEYLKVFFLVLQ 191 (466)
Q Consensus 167 ~~l~~~~~g~~~~~e~L~~~~~~L~ 191 (466)
||+...|...|+|+..+.+||++|.
T Consensus 7 gqimk~yaadpeyrkh~~v~yqil~ 31 (38)
T PF02526_consen 7 GQIMKAYAADPEYRKHLNVLYQILT 31 (38)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHc
Confidence 7888888999999999999999664
No 184
>KOG1128|consensus
Probab=70.75 E-value=1.3e+02 Score=34.44 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=68.4
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~ 406 (466)
|-+|.-+.--++++.|-++++-.+...... +.+...++..|.+.++-.+|..-.+ =|-|.+-.+|++|-+
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd~------~eaWnNls~ayi~~~~k~ra~~~l~----EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPDN------AEAWNNLSTAYIRLKKKKRAFRKLK----EALKCNYQHWQIWEN 592 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCCc------hhhhhhhhHHHHHHhhhHHHHHHHH----HHhhcCCCCCeeeec
Confidence 556777778899999999998777655443 2234456667777777666665544 455777888999998
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy9584 407 AILKDLYKILNDPVRENEALQMHCNFSQ 434 (466)
Q Consensus 407 ~lL~~ly~~~g~~~~~~e~~~~~~~~s~ 434 (466)
=++ +--..|..++|.++++--..+++
T Consensus 593 yml--vsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 593 YML--VSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhh--hhhhcccHHHHHHHHHHHHHhhh
Confidence 665 45578999999998886655554
No 185
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.71 E-value=15 Score=35.56 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=67.5
Q ss_pred HhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHH
Q psy9584 272 VERLSQERELWTFANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLK 351 (466)
Q Consensus 272 Al~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk 351 (466)
++..+.|..+..++.++||-|-+.++.-.+.-..++.+..+.+++---.+||=+ | .-.|+-.+|+.-|.+++.
T Consensus 115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi-l------l~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDI-L------LAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhH-H------HHcCchHHHHHHHHHHHH
Confidence 566688999999999999999999874445666777777766666556677777 4 679999999999999999
Q ss_pred hhhhhhhhhHHHhHH
Q psy9584 352 MANAEDLNRLTSCSL 366 (466)
Q Consensus 352 ~a~~~~l~~l~~~~l 366 (466)
+--+....++.-+=|
T Consensus 188 ~~~s~~~~~~lqmKL 202 (207)
T COG2976 188 SDASPAAREILQMKL 202 (207)
T ss_pred ccCChHHHHHHHhHH
Confidence 865555555555443
No 186
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=68.66 E-value=1.3e+02 Score=35.65 Aligned_cols=107 Identities=13% Similarity=0.001 Sum_probs=77.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHh
Q psy9584 12 FKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIEL 91 (466)
Q Consensus 12 ~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~ 91 (466)
+..|+..+|+ .+|..+ +....+.++|..+++.++.. .--..+.++.+|-+|.+.++...+-.+ .+++.
T Consensus 25 ~~~p~n~~a~--~~Li~~-~~~~~~~deai~i~~~~l~~-------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 25 NYSLSKFKEL--DDLIDA-YKSENLTDEAKDICEEHLKE-------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cCCcchHHHH--HHHHHH-HHhcCCHHHHHHHHHHHHHh-------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 3446666665 456665 22788899999999977553 334567788888899999986544443 55555
Q ss_pred hch-----hhhhHH----------HHHHHHHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 92 SQH-----SIYWHC----------RLIFQLAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 92 s~~-----~~~W~~----------~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
... ...+.| ..+|-||..|-..|++..|...++..+.+.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 542 234455 688899999999999999999999999887
No 187
>PRK11906 transcriptional regulator; Provisional
Probab=68.55 E-value=41 Score=36.48 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh---C--C----ccchhHHHHHHHHhhchhhhhHHHHHHHHH
Q psy9584 37 IDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQ---L--L----SNLSKPILRRAIELSQHSIYWHCRLIFQLA 107 (466)
Q Consensus 37 ~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~---~--~----~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA 107 (466)
.+.|...+++|+..++.-| ....++..||.||+.. | + .+.+....++++++-...+. .++-+|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp----~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~----a~~~~g 345 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQT----LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK----ILAIMG 345 (458)
T ss_pred HHHHHHHHHHHhhcccCCc----ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH----HHHHHH
Confidence 4455556777754333333 4467999999999886 2 1 12355677778887775432 223456
Q ss_pred HHhcccccHHHHHHHHHhHHHHHH
Q psy9584 108 QIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 108 ~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.+++..++++.|+..++.+..+.-
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~P 369 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHST 369 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcCC
Confidence 666777889999888777666544
No 188
>KOG1538|consensus
Probab=67.68 E-value=96 Score=35.32 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHH
Q psy9584 66 SVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLS 145 (466)
Q Consensus 66 slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls 145 (466)
-+||+++.-.|.+..|-.++.+.=..+|.....+=-=+|.+|+=++..|+-+.--....+-++-|+..+.|....=..+|
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLIS 715 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhc
Confidence 57788888888765554445442222222222333335788999999999999999999999999999998654433333
No 189
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=67.67 E-value=1.9e+02 Score=31.41 Aligned_cols=312 Identities=12% Similarity=0.062 Sum_probs=155.9
Q ss_pred HHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhc
Q psy9584 73 ETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLI 152 (466)
Q Consensus 73 ~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~ 152 (466)
...|++..|+.+++.--+.+--......-+.|--|-+-..+.|...|.+.|..+.+.|.+...+.-..- .+.-. -.
T Consensus 7 flnn~~~eAe~~l~~~~~~s~~h~lg~~~i~fl~A~ltfe~~~~~~A~~~l~~a~~~~~~~~k~~~~~~---~~~~~-~~ 82 (468)
T PF10300_consen 7 FLNNRFKEAEELLSPRADESPYHALGYGVIAFLKAMLTFEPEDIEEALEALKEAESLANKFRKKASKVS---KKSNI-SN 82 (468)
T ss_pred HHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHhhccccc---ccccc-cc
Confidence 345566777887775433332234566667777788878889999999999999999985433211100 00000 00
Q ss_pred ccCccHHHHHHHHHhhH-hhh----hccccchHhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCC
Q psy9584 153 DKKVNDAVQLLTQAGYQ-VEN----WTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDE 227 (466)
Q Consensus 153 ~~~~~~v~~al~~~~~l-~~~----~~g~~~~~e~L~~~~~~L~i~~~l~~g~v~~~k~~lkqLq~~~q~i~~~~w~~~~ 227 (466)
...+.+.+.-+-.++.. ... ..++ ..+.++-++. +|-|+... +.+.+.+....+. ...|.
T Consensus 83 ~~~~~~~~~el~~AE~~L~~Ail~~~~es--~~~~iKg~~~-lRkay~~y-------~~~~~~i~~~~~~--~~~~~--- 147 (468)
T PF10300_consen 83 SIYPEELHAELCYAEALLLKAILTFLSES--LVSFIKGGYK-LRKAYKIY-------KECMKIIEKLKKK--AKSSS--- 147 (468)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHhhh--hccCC---
Confidence 11112222222221111 111 1111 3345666666 55554211 2222333222211 10000
Q ss_pred ccCCCCCCcccccC------cchhHHHHHHHHHHhh-------hhhH------HHhcCchhh--HHhhhhc-ch------
Q psy9584 228 VVSGPNVGDMFIWM------PKEHLYVVVYLVTVIG-------HLKF------FGVTGTAGT--EVERLSQ-ER------ 279 (466)
Q Consensus 228 ~~~~~~~~~~f~WL------pk~~l~aLvyl~tv~~-------~lk~------Flv~G~~~~--eAl~~~~-~~------ 279 (466)
+ ..+.....|= -++++..-|+++.++. -|++ +=-.|+... +.|..+. ..
T Consensus 148 --~-~~~~~~~~~~~~~~~~~d~~~~sgv~~G~G~f~L~lSlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~l 224 (468)
T PF10300_consen 148 --P-GEPDSHDSWDDDSTKPIDEFFESGVYFGFGLFNLVLSLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPL 224 (468)
T ss_pred --C-CCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHH
Confidence 0 0000001121 1233444456655544 1221 112344433 2222211 11
Q ss_pred hhHHHHHHHHHHHHHhCC----Cc-hHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhh
Q psy9584 280 ELWTFANLNLAIVYLRGK----RE-GDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMAN 354 (466)
Q Consensus 280 ~~~~~~~lNlai~Yl~~~----~~-~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~ 354 (466)
-..+++..++.+...-+- .+ .++.++++.... ..|.+.- +.|..|-....+++.++|.+.+.+++ ..
T Consensus 225 a~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~-~yP~s~l-----fl~~~gR~~~~~g~~~~Ai~~~~~a~--~~ 296 (468)
T PF10300_consen 225 AALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK-RYPNSAL-----FLFFEGRLERLKGNLEEAIESFERAI--ES 296 (468)
T ss_pred HHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH-hCCCcHH-----HHHHHHHHHHHhcCHHHHHHHHHHhc--cc
Confidence 112223344444444321 12 246666644332 2233222 22557777789999999999999988 44
Q ss_pred hhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCc
Q psy9584 355 AEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDP 419 (466)
Q Consensus 355 ~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~ 419 (466)
.++..++....+.-+|+.+...+++++|.+....=.+..+-++-... =+..=.|-+.|+.
T Consensus 297 q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~-----Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 297 QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA-----YLAAACLLMLGRE 356 (468)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH-----HHHHHHHHhhccc
Confidence 57899999999999999999999999998877766654443332211 1223445566766
No 190
>KOG1463|consensus
Probab=67.64 E-value=14 Score=38.55 Aligned_cols=91 Identities=16% Similarity=0.045 Sum_probs=80.3
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly 413 (466)
+-+++|.+|+......++--+.-|+.-+..-..++=|..|+.++|.-.|...+++|+..|.-+.=++-..=+--+.+.|+
T Consensus 139 ~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl 218 (411)
T KOG1463|consen 139 NDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL 218 (411)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce
Confidence 88999999999999999999999999888888999999999999999999999999999999998887777778888887
Q ss_pred HHcC-CchHHHH
Q psy9584 414 KILN-DPVRENE 424 (466)
Q Consensus 414 ~~~g-~~~~~~e 424 (466)
+... |+.-|.-
T Consensus 219 ha~ekDykTafS 230 (411)
T KOG1463|consen 219 HAAEKDYKTAFS 230 (411)
T ss_pred eecccccchHHH
Confidence 6554 6666644
No 191
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.93 E-value=46 Score=32.73 Aligned_cols=57 Identities=16% Similarity=0.034 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc
Q psy9584 36 NIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ 93 (466)
Q Consensus 36 N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~ 93 (466)
........|++|+..-++.. .....-.....+|+.|+..|++..|...+++.....+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~-~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYG-QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR 209 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455677888888666644 5677777778899999999999988888888755544
No 192
>PRK11906 transcriptional regulator; Provisional
Probab=66.88 E-value=57 Score=35.41 Aligned_cols=117 Identities=11% Similarity=0.027 Sum_probs=80.2
Q ss_pred cchhHHHhhc-CCC-ChhHHHHHHHHHHHH---HHHh---cCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q psy9584 2 CIQCLQAVFN-FKP-PPRVEARTHLQLGNI---LLTH---TKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYE 73 (466)
Q Consensus 2 ai~CLeAvl~-~~~-~p~~Ea~~rLrla~l---L~~~---T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~ 73 (466)
|+.|++-+++ ... |.-.+|-+.+-.+.. ++-+ ..+..+|..+.++|..+-.. --.|...+|.+..
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-------Da~a~~~~g~~~~ 349 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-------DGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHH
Confidence 4566655553 333 445555555444422 2223 33567788888888775332 3468889999999
Q ss_pred HhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHH
Q psy9584 74 TQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 74 ~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~ 129 (466)
..++.+.+...+.++++++-+...-.| .+|-++...|+.+.|++.++.++.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~----~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYY----YRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHH----HHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999999999999999999975533222 4677788899999999998887765
No 193
>KOG2376|consensus
Probab=66.68 E-value=2.3e+02 Score=31.98 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhhc---------------------------hhhhhHHHHHHHHHHHhccccc
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELSQ---------------------------HSIYWHCRLIFQLAQIHAGEKD 115 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~---------------------------~~~~W~~~~~fqLA~i~~~~~D 115 (466)
-...+=|.+.++.+.|..+..++++-+.-.. -.+.-.|.+.|+.|-++...|+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 4677888888888888888887777532220 1234479999999999999999
Q ss_pred HHHHHHHHHhHHHHHHH
Q psy9584 116 YELASSLLGVGVDYANI 132 (466)
Q Consensus 116 ~~~A~~~L~~g~~~A~~ 132 (466)
|+.|++.|+++..+.++
T Consensus 191 y~qA~elL~kA~~~~~e 207 (652)
T KOG2376|consen 191 YNQAIELLEKALRICRE 207 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888875
No 194
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.13 E-value=78 Score=31.10 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCch
Q psy9584 341 EAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPV 420 (466)
Q Consensus 341 eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~ 420 (466)
.....|..+...-+.-+-.|+...-.+.|+.-|+..|++++|.+...++...=++-+-..+.--....|.+.+...||.+
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 34555666666666666688998889999999999999999999999996666666666555555677888899999987
Q ss_pred HHHH
Q psy9584 421 RENE 424 (466)
Q Consensus 421 ~~~e 424 (466)
....
T Consensus 236 ~~l~ 239 (247)
T PF11817_consen 236 DYLT 239 (247)
T ss_pred HHHH
Confidence 6643
No 195
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=66.07 E-value=1.9e+02 Score=30.88 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=72.8
Q ss_pred HHhcCchhh------HHhhhhcchhhHHHHHHHHHHHHHhCCCchHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhh
Q psy9584 262 FGVTGTAGT------EVERLSQERELWTFANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFF 335 (466)
Q Consensus 262 Flv~G~~~~------eAl~~~~~~~~~~~~~lNlai~Yl~~~~~~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~ 335 (466)
|...|...- |+++...|+++..++ -.++.+......+.++.-- +...... .+++.=|-..+.
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~------~~l~~~d~~~l~k~~e~~l--~~h~~~p----~L~~tLG~L~~k 340 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCRLI------PRLRPGDPEPLIKAAEKWL--KQHPEDP----LLLSTLGRLALK 340 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHHHH------hhcCCCCchHHHHHHHHHH--HhCCCCh----hHHHHHHHHHHH
Confidence 456666533 588887777733322 2233332223344432111 1111111 333455666799
Q ss_pred hhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhc
Q psy9584 336 QARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASK 395 (466)
Q Consensus 336 ~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK 395 (466)
++.+.+|+.+++-+++. +..+..+..+|+.|..+|..++|++.=..|+-+...
T Consensus 341 ~~~w~kA~~~leaAl~~-------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 341 NKLWGKASEALEAALKL-------RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred hhHHHHHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 99999999999988873 445556789999999999999999998888865543
No 196
>KOG1155|consensus
Probab=66.03 E-value=72 Score=34.84 Aligned_cols=90 Identities=23% Similarity=0.193 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc----hhhhh
Q psy9584 23 HLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ----HSIYW 98 (466)
Q Consensus 23 rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~----~~~~W 98 (466)
-.-||..+ +-+.+.++|+..+.+|+.+.+ .--.+..-||++|...+....+.+...|.++.+. ..+.-
T Consensus 435 w~aLG~CY-~kl~~~~eAiKCykrai~~~d-------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 435 WVALGECY-EKLNRLEEAIKCYKRAILLGD-------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred HHHHHHHH-HHhccHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 34455553 455566666666666655322 2334555666666666666666666666665441 11111
Q ss_pred HHHHHHHHHHHhcccccHHHHHH
Q psy9584 99 HCRLIFQLAQIHAGEKDYELASS 121 (466)
Q Consensus 99 ~~~~~fqLA~i~~~~~D~~~A~~ 121 (466)
.....| ||+-....+||+.|..
T Consensus 507 ~ka~~f-LA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 507 IKARLF-LAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHH-HHHHHHhhcchHHHHH
Confidence 122222 5555555566655533
No 197
>KOG1125|consensus
Probab=65.36 E-value=15 Score=40.46 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=64.1
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHH
Q psy9584 25 QLG-NILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLI 103 (466)
Q Consensus 25 rla-~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~ 103 (466)
|.| .|||+-..++|.|-+.++.|+.. ++ + | +..-.-|+-..--.++...|...+++|+++--++ -|.+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v-~P-n---d--~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y----VR~R 501 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQV-KP-N---D--YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY----VRVR 501 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhc-CC-c---h--HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe----eeee
Confidence 444 56777777788888888877554 22 1 1 1122333444444445666777788888877555 5667
Q ss_pred HHHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 104 FQLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 104 fqLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
..||-.++..|+|..|+++|=.++++-+.
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 77888888888888888888777777665
No 198
>KOG1129|consensus
Probab=65.27 E-value=46 Score=34.92 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=73.9
Q ss_pred hHHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhH-----HHHHHHHHH
Q psy9584 300 GDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCS-----LVLLGHIFL 374 (466)
Q Consensus 300 ~e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~-----l~llg~i~l 374 (466)
-+++++. ++||.+-+.--+-.|+-+-||- ++.|....|--.-++.+.. .-...+.-++|. -+-||..|+
T Consensus 161 G~f~nls-RLN~tkYa~~p~l~kaLFey~f----yhenDv~~aH~~~~~~~~~-~~a~~s~~~~~~~dwwWk~Q~gkCyl 234 (478)
T KOG1129|consen 161 GKFYNLS-RLNPTKYAERPTLVKALFEYLF----YHENDVQKAHSLCQAVLEV-ERAKPSGSTGCTLDWWWKQQMGKCYL 234 (478)
T ss_pred cceeehh-hcCchhhccChHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHH-HhccccccccchHhHHHHHHHHHHHH
Confidence 3577654 5777655555555566555532 4566666555433333322 122334445565 367999999
Q ss_pred hcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHH
Q psy9584 375 SLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENE 424 (466)
Q Consensus 375 ~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e 424 (466)
++|-+++|++-+.+++.- ++.+| +..+|+++|-+...|+.|.-
T Consensus 235 rLgm~r~AekqlqssL~q-~~~~d------TfllLskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ-FPHPD------TFLLLSKVYQRIDQPERALL 277 (478)
T ss_pred HhcChhhhHHHHHHHhhc-CCchh------HHHHHHHHHHHhccHHHHHH
Confidence 999999999999999863 34444 67899999999999999864
No 199
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=65.17 E-value=2.2e+02 Score=34.80 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=92.3
Q ss_pred CChhHHHHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q psy9584 14 PPPRVEARTHLQLGNILLTHT-------------------KNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYET 74 (466)
Q Consensus 14 ~~p~~Ea~~rLrla~lL~~~T-------------------~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~ 74 (466)
.||.+|+.+.+|++++|..-. ..-.++-.++.|++.+.-. .-=..-++..++.||.+|..
T Consensus 379 ~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~-~l~~~dqi~i~~~lA~vy~~ 457 (1185)
T PF08626_consen 379 VPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK-DLSVEDQIRIYSGLASVYGS 457 (1185)
T ss_pred CcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh-hCCHHHHHHHHHHHHHHHHh
Confidence 599999999999999987766 1477888899999886432 11246789999999999999
Q ss_pred hCCccchhHHHHHHHHhhc-hhhhhHH---HHHHHHHHHhccc---------------c-cHHHHHHHHHhHHHHHHHhc
Q psy9584 75 QLLSNLSKPILRRAIELSQ-HSIYWHC---RLIFQLAQIHAGE---------------K-DYELASSLLGVGVDYANISN 134 (466)
Q Consensus 75 ~~~~~~ak~~l~k~i~~s~-~~~~W~~---~~~fqLA~i~~~~---------------~-D~~~A~~~L~~g~~~A~~~~ 134 (466)
.|=....--++|.++...- ....|+- .++..+..+|... + ...-=+..|+..+..|++.+
T Consensus 458 lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~ 537 (1185)
T PF08626_consen 458 LGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALG 537 (1185)
T ss_pred cchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcC
Confidence 9944444445666554442 2234443 2434455555441 1 33344678999999999999
Q ss_pred ChHHHHHHHHHHHHH
Q psy9584 135 AQYTRVLFLLSRCML 149 (466)
Q Consensus 135 d~~~~~lf~ls~~~~ 149 (466)
|....+-|+..-+..
T Consensus 538 D~~~~~~~~~~LL~~ 552 (1185)
T PF08626_consen 538 DFAGVLRFSSLLLRT 552 (1185)
T ss_pred CHHHHHHHHHHHHHH
Confidence 987766665544433
No 200
>KOG4642|consensus
Probab=64.75 E-value=23 Score=35.52 Aligned_cols=89 Identities=17% Similarity=0.078 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccH
Q psy9584 37 IDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDY 116 (466)
Q Consensus 37 ~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~ 116 (466)
++.|-+++.||+.+...+..|+.-+ |.||.+.+++...-.==|+++++.-+.+.-|| -|++...--..|
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnr-------alchlk~~~~~~v~~dcrralql~~N~vk~h~----flg~~~l~s~~~ 94 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNR-------ALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY----FLGQWLLQSKGY 94 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhH-------HHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH----HHHHHHHhhccc
Confidence 6778889999999887776676544 67889999888888778889998876655544 466666777889
Q ss_pred HHHHHHHHhHHHHHHHhcCh
Q psy9584 117 ELASSLLGVGVDYANISNAQ 136 (466)
Q Consensus 117 ~~A~~~L~~g~~~A~~~~d~ 136 (466)
..|+..|+.+.++.+++.-+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999987665
No 201
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=64.14 E-value=60 Score=35.35 Aligned_cols=90 Identities=22% Similarity=0.298 Sum_probs=71.3
Q ss_pred HHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHH
Q psy9584 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQ 402 (466)
Q Consensus 323 a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~q 402 (466)
-++.|=.|+..+.-+++++|+..|++-++- .-|+..+.. +.|.|++..++..+|.++++.++.+ -|+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~----~~~~i~~~~nk~~~A~e~~~kal~l---~P~~--- 373 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLE----LAGDILLEANKAKEAIERLKKALAL---DPNS--- 373 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHH----HHHHHHHHcCChHHHHHHHHHHHhc---CCCc---
Confidence 344578888889999999999999996653 335555444 8999999999999999999999865 4553
Q ss_pred HHHHHHHHHHHHHcCCchHHHH
Q psy9584 403 LWASAILKDLYKILNDPVRENE 424 (466)
Q Consensus 403 lw~~~lL~~ly~~~g~~~~~~e 424 (466)
-|---.+.+.|...|+|+.+-.
T Consensus 374 ~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHH
Confidence 5555678899999999996643
No 202
>PLN02789 farnesyltranstransferase
Probab=63.65 E-value=1.2e+02 Score=31.34 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCc--cchhHHHHHHHHhhc-hhhhhHHHH
Q psy9584 26 LGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLS--NLSKPILRRAIELSQ-HSIYWHCRL 102 (466)
Q Consensus 26 la~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~--~~ak~~l~k~i~~s~-~~~~W~~~~ 102 (466)
-|.+|..-..+.++|...+++++..-.+ + +++.+.-+.++...|.. ......+.++|+.-. ++..|.+|-
T Consensus 77 R~~iL~~L~~~l~eeL~~~~~~i~~npk-n------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~ 149 (320)
T PLN02789 77 RRLCLEALDADLEEELDFAEDVAEDNPK-N------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQ 149 (320)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHCCc-c------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3444444434456666666665543111 1 33455566666666653 446677777777664 666777654
Q ss_pred HHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHH
Q psy9584 103 IFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLL 144 (466)
Q Consensus 103 ~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~l 144 (466)
.. ...-|+|..|++.+++.++..-+++...-.-.|.+
T Consensus 150 w~-----l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 150 WV-----LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HH-----HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 33 33447799999999998888776666544444443
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=62.04 E-value=14 Score=26.05 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCC
Q psy9584 365 SLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397 (466)
Q Consensus 365 ~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~ 397 (466)
++..+|..|.+.|+.++|+++...++...=+.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 467889999999999999999999888654433
No 204
>KOG1174|consensus
Probab=61.37 E-value=31 Score=37.15 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHH
Q psy9584 28 NILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLA 107 (466)
Q Consensus 28 ~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA 107 (466)
.++++-..--+.||+.+|+|+.+ -|.|.. |-..+|++....|++.-+..+|++.+....+ |.+..-||
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~----AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-----~~LH~~Lg 478 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKI---NPIYTP----AVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-----VNLHNHLG 478 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhcc---CCccHH----HHHHHHHHHHhhCccchHHHHHHHHHhhccc-----cHHHHHHH
Confidence 55555566689999999999765 355553 6678999999999998899999998877643 45666789
Q ss_pred HHhcccccHHHHHHHHHhHHHHHH
Q psy9584 108 QIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 108 ~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
++....+.++.|.+.+++++.+.-
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999999999999999999887755
No 205
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=60.97 E-value=9.2 Score=25.86 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHH
Q psy9584 85 LRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELAS 120 (466)
Q Consensus 85 l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~ 120 (466)
++|+|++-- .....++.||.++...||++.|+
T Consensus 2 y~kAie~~P----~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP----NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC----CCHHHHHHHHHHHHHCcCHHhhc
Confidence 467777764 33667788999999999999885
No 206
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.30 E-value=12 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhHHH
Q psy9584 102 LIFQLAQIHAGEKDYELASSLLGVGVD 128 (466)
Q Consensus 102 ~~fqLA~i~~~~~D~~~A~~~L~~g~~ 128 (466)
.+|.+|.++...||++.|++.++..++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 367889999999999999999988765
No 207
>KOG0548|consensus
Probab=59.18 E-value=1.5e+02 Score=32.82 Aligned_cols=103 Identities=13% Similarity=0.042 Sum_probs=77.1
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhch
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQH 94 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~ 94 (466)
.|..+..-|.+ ..-+....|+-.|-.|+.+|+..-.. --.++|..|=||.+.|.++.+..=..++|++-.
T Consensus 354 ~pe~A~e~r~k--Gne~Fk~gdy~~Av~~YteAIkr~P~-------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p- 423 (539)
T KOG0548|consen 354 NPEKAEEEREK--GNEAFKKGDYPEAVKHYTEAIKRDPE-------DARLYSNRAACYLKLGEYPEALKDAKKCIELDP- 423 (539)
T ss_pred ChhHHHHHHHH--HHHHHhccCHHHHHHHHHHHHhcCCc-------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-
Confidence 34444444444 44456778899999999998774322 235789999999999998877776788888843
Q ss_pred hhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHH
Q psy9584 95 SIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYA 130 (466)
Q Consensus 95 ~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A 130 (466)
-| .+.++.-|.++...++|+.|++.+++|....
T Consensus 424 --~~-~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 424 --NF-IKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred --hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34 5666667999999999999999999998876
No 208
>KOG2908|consensus
Probab=58.98 E-value=1.9e+02 Score=30.37 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHH--HHHHHHHHH
Q psy9584 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS--AILKDLYKI 415 (466)
Q Consensus 338 ~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~--~lL~~ly~~ 415 (466)
..++|.+++.+...--+..+-+--..-..+-++.+++..|+.+++++.+......--+.+++.-.+.++ .+=++.|+.
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~ 169 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKK 169 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHH
Confidence 688999999988776666665545555677889999999999999999999998888888877666665 677888999
Q ss_pred cCCchHHHHHHHHHHHHH
Q psy9584 416 LNDPVRENEALQMHCNFS 433 (466)
Q Consensus 416 ~g~~~~~~e~~~~~~~~s 433 (466)
-||+...+.-.-.|.+.+
T Consensus 170 ~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 170 IGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHhHHHHHHHHHHHhccc
Confidence 999999988777787777
No 209
>KOG1464|consensus
Probab=57.49 E-value=49 Score=33.84 Aligned_cols=133 Identities=18% Similarity=0.272 Sum_probs=88.6
Q ss_pred hhcchhhHHHHHH--HHHHHHHhCCCch---HHHHHHhhhCCC-ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHH
Q psy9584 275 LSQERELWTFANL--NLAIVYLRGKREG---DFAALLERINPE-TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRE 348 (466)
Q Consensus 275 ~~~~~~~~~~~~l--Nlai~Yl~~~~~~---e~~~~l~~i~~~-~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre 348 (466)
+-+++.-|.|-.+ .+-+.|..++++. .|.+++--|.+. +--.+-++|-+...||++-.. ..--..+|..
T Consensus 56 lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~-----m~LLQ~FYeT 130 (440)
T KOG1464|consen 56 LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN-----MDLLQEFYET 130 (440)
T ss_pred cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh-----hHHHHHHHHH
Confidence 3556667777333 2333344455443 366777555555 334677888888888764322 2223356666
Q ss_pred HHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9584 349 TLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413 (466)
Q Consensus 349 ~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly 413 (466)
||+.-++.-+.||---+-+-||.+|+..|.+..-++.++.--+-+++-....-|.-.+.+| ++|
T Consensus 131 TL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL-EiY 194 (440)
T KOG1464|consen 131 TLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL-EIY 194 (440)
T ss_pred HHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh-hhH
Confidence 6666566666777777788899999999999999999998888888777666677777776 555
No 210
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.24 E-value=13 Score=21.83 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhHHHH
Q psy9584 102 LIFQLAQIHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 102 ~~fqLA~i~~~~~D~~~A~~~L~~g~~~ 129 (466)
.++.+|.++...+++..|+..++.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3456777777778888777777766543
No 211
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.89 E-value=37 Score=32.92 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=38.4
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRES 382 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea 382 (466)
|...+.++|+++|..+|..++..+ .+-...+.-|+.+|..+|++++|
T Consensus 151 Y~krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 151 YTKRDPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHhcchhhh
Confidence 678899999999999999998884 22245566788999999998876
No 212
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=49 Score=34.07 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=74.1
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly 413 (466)
+.+++|.+|.......+.--+.-|+.-..--..++=|.+|...+|...|...+++|+.+|..+.=++...=---++..||
T Consensus 136 y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIl 215 (421)
T COG5159 136 YKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGIL 215 (421)
T ss_pred HhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccce
Confidence 78999999999888777777777776666666788999999999999999999999999999988776666667888887
Q ss_pred HHcC-CchHHHHH
Q psy9584 414 KILN-DPVRENEA 425 (466)
Q Consensus 414 ~~~g-~~~~~~e~ 425 (466)
+--. |+.-|.-|
T Consensus 216 hcdd~dyktA~SY 228 (421)
T COG5159 216 HCDDRDYKTASSY 228 (421)
T ss_pred eeccccchhHHHH
Confidence 5433 66655543
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=55.86 E-value=71 Score=31.11 Aligned_cols=100 Identities=21% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc--hhhhh
Q psy9584 21 RTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ--HSIYW 98 (466)
Q Consensus 21 ~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~--~~~~W 98 (466)
.-|+|||.-|.+ -....+|+.|++++.. +. |.+ --.+...||+--+-.+..+.+.+.|.+-.|.-- ..|.-
T Consensus 90 qnr~rLa~al~e-lGr~~EA~~hy~qals----G~-fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 90 QNRYRLANALAE-LGRYHEAVPHYQQALS----GI-FAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HHHHHHHHHHHH-hhhhhhhHHHHHHHhc----cc-cCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 347778876654 4568899999999844 33 222 234455667777778888889998888777652 12222
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 99 HCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 99 ~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
+ +.+|-.+..+|.+..|.+.++..++++.
T Consensus 163 ~----Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 163 H----LLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred h----HHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 2 2458888999999999999999888875
No 214
>KOG0543|consensus
Probab=55.85 E-value=28 Score=36.94 Aligned_cols=67 Identities=27% Similarity=0.437 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHhCC-Cc-h--HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhh
Q psy9584 280 ELWTFANLNLAIVYLRGK-RE-G--DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANA 355 (466)
Q Consensus 280 ~~~~~~~lNlai~Yl~~~-~~-~--e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~ 355 (466)
....-|++|||++|+..+ +. + .+..+|+ +.| ...+.| |=+|--....|.|+.|+..++++++...+
T Consensus 254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~~----~N~KAL-----yRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLE-LDP----NNVKAL-----YRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cCC----CchhHH-----HHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 345569999999999977 33 2 2555553 333 222333 44444447788999999999999887655
Q ss_pred h
Q psy9584 356 E 356 (466)
Q Consensus 356 ~ 356 (466)
+
T Consensus 324 N 324 (397)
T KOG0543|consen 324 N 324 (397)
T ss_pred c
Confidence 4
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=55.44 E-value=71 Score=29.23 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=52.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHH
Q psy9584 32 THTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF 104 (466)
Q Consensus 32 ~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~f 104 (466)
....|.+.|...||.- -.+-| |.+.--+|+..|+..|++.+.++.+...+.+=|++--..+.=-|.++.
T Consensus 21 l~~~~Y~~A~~~le~L---~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEAL---DTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHhCCHHHHHHHHHHH---HhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3567899999999873 22333 667778999999999999999999999999999888543333343333
No 216
>PF15469 Sec5: Exocyst complex component Sec5
Probab=54.09 E-value=91 Score=28.97 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHh---cccccHHHHHHHHHhHHHHHHHh
Q psy9584 96 IYWHCRLIFQLAQIH---AGEKDYELASSLLGVGVDYANIS 133 (466)
Q Consensus 96 ~~W~~~~~fqLA~i~---~~~~D~~~A~~~L~~g~~~A~~~ 133 (466)
..-.++|+|.|-.-. ...|||+.|+..+.++-.+..+.
T Consensus 79 ~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 79 FLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 356689999875443 67899999999999999998876
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=53.47 E-value=1.5e+02 Score=25.79 Aligned_cols=100 Identities=16% Similarity=0.028 Sum_probs=69.8
Q ss_pred hcCCHHHHHHHHHHHHHHHhcc---------------ccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhh
Q psy9584 33 HTKNIDLARNHLEQAWHLSQSI---------------NAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIY 97 (466)
Q Consensus 33 ~T~N~~~A~~hLeka~~L~~~~---------------~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~ 97 (466)
...+.+.+...++++..+-+.- ..+.+....+..-+++.+...|.+..+..+++++++.---
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--- 94 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY--- 94 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT---
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---
Confidence 4557888999999997765521 1233566778888999999999999999999998888732
Q ss_pred hHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH-HhcCh
Q psy9584 98 WHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN-ISNAQ 136 (466)
Q Consensus 98 W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~-~~~d~ 136 (466)
.=.++..+..++...|+...|++.++.....-. +.|..
T Consensus 95 -~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 95 -DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred -CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 234445677888999999999999999765555 46664
No 218
>KOG1155|consensus
Probab=51.75 E-value=3.7e+02 Score=29.65 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q psy9584 366 LVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMHCNFS 433 (466)
Q Consensus 366 l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~s 433 (466)
++-||..|-.+++.++|++--+.|.....--.+ +.--|.++|...+|.++|-.+|..+...+
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~------~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTEGS------ALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccchH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544333222 12235677777777777777777666644
No 219
>KOG4507|consensus
Probab=50.84 E-value=49 Score=37.10 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=57.7
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccch
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLS 81 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~a 81 (466)
|++||+.+|..+|... ----.+||.+++.|| =...|--.|.+++.+.-+-+ - .++.+++.|....+...|
T Consensus 626 a~~cl~~a~~~~p~~~--~v~~v~la~~~~~~~-~~~da~~~l~q~l~~~~sep-----l--~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 626 AIACLQRALNLAPLQQ--DVPLVNLANLLIHYG-LHLDATKLLLQALAINSSEP-----L--TFLSLGNAYLALKNISGA 695 (886)
T ss_pred HHHHHHHHhccChhhh--cccHHHHHHHHHHhh-hhccHHHHHHHHHhhcccCc-----h--HHHhcchhHHHHhhhHHH
Confidence 7899988887665111 112357899999999 66677777887776532222 1 246778888887778888
Q ss_pred hHHHHHHHHhhchh
Q psy9584 82 KPILRRAIELSQHS 95 (466)
Q Consensus 82 k~~l~k~i~~s~~~ 95 (466)
.+.+++++...-..
T Consensus 696 ~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 696 LEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHHhcCCCC
Confidence 88888888877543
No 220
>KOG3081|consensus
Probab=50.58 E-value=1.9e+02 Score=29.59 Aligned_cols=127 Identities=22% Similarity=0.197 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc--------
Q psy9584 22 THLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ-------- 93 (466)
Q Consensus 22 ~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~-------- 93 (466)
+-+-+|-+-+-|..+.|+|..+++++-. .++.-+=-.|+.++.....+++.++++.+...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA 176 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLA 176 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 4445566777888899999999987411 12333334455555555556665665443331
Q ss_pred -h------------h-----------hhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHH
Q psy9584 94 -H------------S-----------IYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCML 149 (466)
Q Consensus 94 -~------------~-----------~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ 149 (466)
. . ..=++......|-+|+..|+|+.|.+.|+.+++-- .+||.+ |+...+
T Consensus 177 ~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpet-----L~Nliv 249 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPET-----LANLIV 249 (299)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHH-----HHHHHH
Confidence 0 0 11123445567889999999999999999887644 477633 334444
Q ss_pred --HhcccCccHHHHHHHHHh
Q psy9584 150 --LLIDKKVNDAVQLLTQAG 167 (466)
Q Consensus 150 --ll~~~~~~~v~~al~~~~ 167 (466)
++..++.+.+++-+++.-
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHhCCChHHHHHHHHHHH
Confidence 445566665656555543
No 221
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=50.47 E-value=14 Score=23.23 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=9.2
Q ss_pred HHHHHhcccccHHHHHHHH
Q psy9584 105 QLAQIHAGEKDYELASSLL 123 (466)
Q Consensus 105 qLA~i~~~~~D~~~A~~~L 123 (466)
.||.++...||.+.|...+
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 4444555555555554444
No 222
>KOG4234|consensus
Probab=50.07 E-value=1.1e+02 Score=30.02 Aligned_cols=97 Identities=16% Similarity=0.003 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHH
Q psy9584 26 LGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQ 105 (466)
Q Consensus 26 la~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fq 105 (466)
=|+-| +-...++.|..-+..|+.+|... +++++.=.++.=|-++.+.+.+..+..--.|+|++--.+ -+.+-.
T Consensus 101 EGN~~-F~ngdyeeA~skY~~Ale~cp~~--~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty----~kAl~R 173 (271)
T KOG4234|consen 101 EGNEL-FKNGDYEEANSKYQEALESCPST--STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY----EKALER 173 (271)
T ss_pred HHHHh-hhcccHHHHHHHHHHHHHhCccc--cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh----HHHHHH
Confidence 34443 34566899999999999999884 568888888888999999998888888888899887544 344556
Q ss_pred HHHHhcccccHHHHHHHHHhHHHH
Q psy9584 106 LAQIHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 106 LA~i~~~~~D~~~A~~~L~~g~~~ 129 (466)
+|.+|....-|+.|++-|.++.+.
T Consensus 174 RAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 799998888899999888877654
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=48.80 E-value=1.2e+02 Score=30.91 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=64.8
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHH---hcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFL---SLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILK 410 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l---~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~ 410 (466)
+.+|++..|..-|+++.+++-++-. .+.-++.++. ...+..++.++++.++.+ .-.| +-+-.+|.
T Consensus 167 m~~~~~~~A~~AY~~A~rL~g~n~~------~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~----iral~lLA 234 (287)
T COG4235 167 MALGRASDALLAYRNALRLAGDNPE------ILLGLAEALYYQAGQQMTAKARALLRQALAL--DPAN----IRALSLLA 234 (287)
T ss_pred HHhcchhHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCcc----HHHHHHHH
Confidence 8899999999999999999877632 1223444444 455688999999988643 3333 67788999
Q ss_pred HHHHHcCCchHHHHHHHHHHH
Q psy9584 411 DLYKILNDPVRENEALQMHCN 431 (466)
Q Consensus 411 ~ly~~~g~~~~~~e~~~~~~~ 431 (466)
--+...||+++|-...++-..
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 999999999999887776544
No 224
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=47.47 E-value=26 Score=22.03 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCccchhHHHH
Q psy9584 63 EAASVLAELYETQLLSNLSKPILR 86 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~ 86 (466)
.+.+.||+++...|+.+.+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999998887664
No 225
>KOG4322|consensus
Probab=45.55 E-value=4.4e+02 Score=28.73 Aligned_cols=174 Identities=16% Similarity=0.114 Sum_probs=104.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc-
Q psy9584 15 PPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ- 93 (466)
Q Consensus 15 ~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~- 93 (466)
...+|+..| -|.||.. -+-.-.|..-|.+...-|.+++ .++.+..---.+|+++.+.+.--...+++-..+...+
T Consensus 270 ~~svE~l~R--~A~il~A-~~q~s~A~~ll~kL~vqc~k~~-~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 270 QQSVENLCR--FAHILHA-DEQVSYAYALLNKLMVQCDKGC-NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred HhhHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 556777666 7888432 2337889999999888888865 8899999999999999987754445555555555544
Q ss_pred -hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHH--HHHHHHHHHHHHhcc----cCccHHHHHHHHH
Q psy9584 94 -HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYT--RVLFLLSRCMLLLID----KKVNDAVQLLTQA 166 (466)
Q Consensus 94 -~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~--~~lf~ls~~~~ll~~----~~~~~v~~al~~~ 166 (466)
..++-...-...||..+-.-|--..|+..|+.....-.-+|.-+- +..|-.+++.+.-.. .+.+.+-+.++++
T Consensus 346 y~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A 425 (482)
T KOG4322|consen 346 YSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLA 425 (482)
T ss_pred hccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHH
Confidence 334444555556777777778888888888888877766665322 233333333331111 1112222334444
Q ss_pred hhHhhhhccccchHhhHHHHHHHHHHHhh
Q psy9584 167 GYQVENWTGSQYQKEYLKVFFLVLQVCHY 195 (466)
Q Consensus 167 ~~l~~~~~g~~~~~e~L~~~~~~L~i~~~ 195 (466)
.+.+.. .......+.+.|.+.+.-+-
T Consensus 426 ~~~f~k---L~~he~ildv~yf~A~~yn~ 451 (482)
T KOG4322|consen 426 QSIFYK---LGCHEKILDVTYFSAYQYNH 451 (482)
T ss_pred HHHHHH---ccchHHHHHHHHHHHHHHHh
Confidence 444333 33234456666665555543
No 226
>KOG1156|consensus
Probab=42.92 E-value=5.6e+02 Score=29.26 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHhh-chhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHH
Q psy9584 63 EAASVLAELYETQLLSNLSKPILRRAIELS-QHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVL 141 (466)
Q Consensus 63 ~a~slLa~~y~~~~~~~~ak~~l~k~i~~s-~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~l 141 (466)
+...+.|-...-.|....|-...|.++.-- ++.+.||- +|-++-.++||+.|+.-+..++.+-. .-.+++
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv-----~gl~~R~dK~Y~eaiKcy~nAl~~~~----dN~qil 112 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV-----LGLLQRSDKKYDEAIKCYRNALKIEK----DNLQIL 112 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH-----HHHHHhhhhhHHHHHHHHHHHHhcCC----CcHHHH
Confidence 455566777777777777777777776543 46789996 67788899999999999888776543 334555
Q ss_pred HHHHHHHHHh
Q psy9584 142 FLLSRCMLLL 151 (466)
Q Consensus 142 f~ls~~~~ll 151 (466)
--+|-+++.|
T Consensus 113 rDlslLQ~Qm 122 (700)
T KOG1156|consen 113 RDLSLLQIQM 122 (700)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 227
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.75 E-value=41 Score=23.73 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCC
Q psy9584 364 CSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397 (466)
Q Consensus 364 ~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~ 397 (466)
..+..||.|.+-.+|+.+|..=.+.++.+=+++-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3577899999999999999988888888876653
No 228
>KOG3060|consensus
Probab=40.63 E-value=3.2e+02 Score=27.84 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=69.2
Q ss_pred hcchhhHHHHHHHHHHHHHhCC-Cch--HHHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHh
Q psy9584 276 SQERELWTFANLNLAIVYLRGK-REG--DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKM 352 (466)
Q Consensus 276 ~~~~~~~~~~~lNlai~Yl~~~-~~~--e~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~ 352 (466)
..|.+.|.. |+-+|+..+ ..+ -|++-+--++|..- -.+..+ |-+.|+.|- -.++.-|++||..+|++
T Consensus 151 ~~D~EAW~e----LaeiY~~~~~f~kA~fClEE~ll~~P~n~-l~f~rl-ae~~Yt~gg----~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 151 MNDQEAWHE----LAEIYLSEGDFEKAAFCLEELLLIQPFNP-LYFQRL-AEVLYTQGG----AENLELARKYYERALKL 220 (289)
T ss_pred cCcHHHHHH----HHHHHHhHhHHHHHHHHHHHHHHcCCCcH-HHHHHH-HHHHHHHhh----HHHHHHHHHHHHHHHHh
Confidence 346777764 567777755 333 26666666777532 245556 777887776 56888999999999998
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCC---hhHHHHHHHHHHHHHHH
Q psy9584 353 ANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPD---VHVQLWASAILKDLYKI 415 (466)
Q Consensus 353 a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D---~~~qlw~~~lL~~ly~~ 415 (466)
.. .++.-+.+.+ +-|+.. +..+..-.++-.| +...-|+..-+.++|..
T Consensus 221 ~~-~~~ral~GI~--lc~~~l------------a~~sk~~~k~~K~~a~~~l~~~aas~l~r~~q~ 271 (289)
T KOG3060|consen 221 NP-KNLRALFGIY--LCGSAL------------AQISKAELKRKKDVAAPDLISLAASQLERISQK 271 (289)
T ss_pred Ch-HhHHHHHHHH--HHHHHH------------HHHhHHHHhhhhhhhhhhHHHhHHHHHHHHHHh
Confidence 77 4444444422 112221 1122222233333 44567888888888833
No 229
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.04 E-value=38 Score=24.69 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=22.2
Q ss_pred HHHHHHhcccccHHHHHHHHHhHHH
Q psy9584 104 FQLAQIHAGEKDYELASSLLGVGVD 128 (466)
Q Consensus 104 fqLA~i~~~~~D~~~A~~~L~~g~~ 128 (466)
+.||.+|..-||+++|.+.|+..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999998873
No 230
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.27 E-value=3.9e+02 Score=26.13 Aligned_cols=138 Identities=18% Similarity=0.185 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhCC-CchH---HHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhh
Q psy9584 284 FANLNLAIVYLRGK-REGD---FAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLN 359 (466)
Q Consensus 284 ~~~lNlai~Yl~~~-~~~e---~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~ 359 (466)
....+++..|..+. -+.+ ...........+.++....| |.. |-.|- -...++.+|.++|+++-+..+.+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~l-g~~-~~~G~--gv~~d~~~A~~~~~~Aa~~g~~~a-- 147 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNL-GLM-YANGR--GVPLDLVKALKYYEKAAKLGNVEA-- 147 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhH-HHH-HhcCC--CcccCHHHHHHHHHHHHHcCChhH--
Confidence 67888999999955 2221 11222222222444444445 555 32222 023388999999999999888877
Q ss_pred hHHHhHHHHHHHHHHhcC-------ChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q psy9584 360 RLTSCSLVLLGHIFLSLG-------NHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMHCNF 432 (466)
Q Consensus 360 ~l~~~~l~llg~i~l~~~-------~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~ 432 (466)
+.+...+|.+|...+ +.++|......|...- +...+.-...++..=.---.|+.+|..||..-...
T Consensus 148 ---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 148 ---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred ---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 566778888888763 1224444444444333 44444433333322111122888888888776554
Q ss_pred HH
Q psy9584 433 SQ 434 (466)
Q Consensus 433 s~ 434 (466)
-+
T Consensus 221 g~ 222 (292)
T COG0790 221 GD 222 (292)
T ss_pred CC
Confidence 43
No 231
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.61 E-value=56 Score=23.02 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy9584 20 ARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQS 53 (466)
Q Consensus 20 a~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~ 53 (466)
|.++.+||.+= -+++|+++|-.-+++|+.+-++
T Consensus 1 Adv~~~Lgeis-le~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 1 ADVYDLLGEIS-LENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred CcHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHH
Confidence 46889999773 4789999999999999887665
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=37.45 E-value=2.5e+02 Score=23.65 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=55.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHH
Q psy9584 30 LLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQI 109 (466)
Q Consensus 30 L~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i 109 (466)
.+....+.+.|...+++++.+... ..........++..+...+.+..+...+.++++..... .......++..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~ 211 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---DAEALLNLGLL 211 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHH
Confidence 556677777777777777331110 11222333333333556666666666677766666542 23444456666
Q ss_pred hcccccHHHHHHHHHhHHHHHHH
Q psy9584 110 HAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 110 ~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
+...+++..|...+.........
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhCcc
Confidence 66666777777777776666553
No 233
>KOG4555|consensus
Probab=35.31 E-value=1.6e+02 Score=27.11 Aligned_cols=64 Identities=27% Similarity=0.295 Sum_probs=58.5
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCCh
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~ 399 (466)
-.||+..+|+.-|.++|.+|... -|-.|.++|-=|-+|--.||-+.|..=...|-++-+|....
T Consensus 88 RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 88 RLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFARE 151 (175)
T ss_pred HHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHH
Confidence 57999999999999999999877 78899999999999999999999999999999998887654
No 234
>KOG4642|consensus
Probab=35.26 E-value=1.6e+02 Score=29.71 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=48.0
Q ss_pred cchhH-HHhhcCCCC---hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCC
Q psy9584 2 CIQCL-QAVFNFKPP---PRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLL 77 (466)
Q Consensus 2 ai~CL-eAvl~~~~~---p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~ 77 (466)
||+|+ +|++.+..+ .+-.|.+||++-. .+.+..-=-+|+.+ +---.-+++.|+.+..+...
T Consensus 29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~--------~~~v~~dcrralql-------~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 29 AIDCYSRAICINPTVASYYTNRALCHLKLKH--------WEPVEEDCRRALQL-------DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--------hhhhhhhHHHHHhc-------ChHHHHHHHHHHHHHHhhcc
Confidence 78999 888865443 6788999998432 22232222333222 22234466777777777777
Q ss_pred ccchhHHHHHHHHhhc
Q psy9584 78 SNLSKPILRRAIELSQ 93 (466)
Q Consensus 78 ~~~ak~~l~k~i~~s~ 93 (466)
++.+...|.++..+++
T Consensus 94 ~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLR 109 (284)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7777777777777775
No 235
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=34.95 E-value=1.2e+02 Score=28.99 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=19.5
Q ss_pred CccchhHHHHHHHHhhchhhhhHHHHHHHH
Q psy9584 77 LSNLSKPILRRAIELSQHSIYWHCRLIFQL 106 (466)
Q Consensus 77 ~~~~ak~~l~k~i~~s~~~~~W~~~~~fqL 106 (466)
+..+.-.+.|++++++...|..|..+.-|.
T Consensus 108 ~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 108 DEDPNNELYRKSLEMAAKAPELHMEIHKQG 137 (186)
T ss_dssp HH-TT-HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred hcCCCcHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444555678888888877777777666553
No 236
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.84 E-value=1.3e+02 Score=29.65 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhhhh-hhhhHHHhHHHHHHHHHH--hcCChHHHHHhhHHHHHHhhcCCC
Q psy9584 339 YNEAKRYLRETLKMANAE-DLNRLTSCSLVLLGHIFL--SLGNHRESMNMVTPAMQLASKIPD 398 (466)
Q Consensus 339 ~~eAk~~lre~lk~a~~~-~l~~l~~~~l~llg~i~l--~~~~~~ea~~~~~~a~~lAkK~~D 398 (466)
..+|++.|++|+.+|+.. .-..-+-.+|.+.--+|+ -.|+.++|.++++.|.+-|-.--|
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 468899999999999984 223333334444444444 689999999999999998865444
No 237
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=34.05 E-value=1e+02 Score=29.05 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCchH---HHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhh
Q psy9584 279 RELWTFANLNLAIVYLRGKREGD---FAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANA 355 (466)
Q Consensus 279 ~~~~~~~~lNlai~Yl~~~~~~e---~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~ 355 (466)
++...-+.+|...+++..+.... +.+.++.+. .++.....|..+.|..|+..+.+|+-.++++-..+++++-..
T Consensus 124 ~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~---~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~ 200 (220)
T TIGR01716 124 RRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKIL---DPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDE 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH
Confidence 44445567776666666542232 444444333 233455568888899999999999888888888888887777
Q ss_pred hhhhhHHH
Q psy9584 356 EDLNRLTS 363 (466)
Q Consensus 356 ~~l~~l~~ 363 (466)
.|...+..
T Consensus 201 lg~~~~~~ 208 (220)
T TIGR01716 201 LGYPTLAA 208 (220)
T ss_pred cCCHHHHH
Confidence 77665544
No 238
>KOG4340|consensus
Probab=33.26 E-value=2.9e+02 Score=28.83 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=40.8
Q ss_pred HHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcC
Q psy9584 83 PILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNA 135 (466)
Q Consensus 83 ~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d 135 (466)
..+|++++.+.....-..-...-.|.+++...||..+.+.+.+++++.+++.-
T Consensus 397 ~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 45777777776544444455556799999999999999999999999987653
No 239
>COG4499 Predicted membrane protein [Function unknown]
Probab=33.09 E-value=2.4e+02 Score=30.10 Aligned_cols=93 Identities=24% Similarity=0.265 Sum_probs=55.9
Q ss_pred HHHHHhhhCCCccccccchhhHHHHHHHhHHHhhhhcHHHHH-HHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChH
Q psy9584 302 FAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAK-RYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHR 380 (466)
Q Consensus 302 ~~~~l~~i~~~~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk-~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ 380 (466)
...-++...|+.+|.+-+++ =|..||.+ .....++ +-+-+. ..+-+.=-.++=||+...|.++
T Consensus 267 VittLe~ydp~klPksv~Y~-LA~SYV~~------e~L~~~kkeNi~Nn---------islkSd~~~llYWi~~GRGe~~ 330 (434)
T COG4499 267 VITTLENYDPEKLPKSVQYI-LAVSYVNL------EDLTTTKKENILNN---------ISLKSDDNYLLYWIYSGRGEFK 330 (434)
T ss_pred HhhhcccCChhhCcHHHHHH-HHHHHhhc------cccchHHHHHHhhc---------cccccchhHHHHHHHhcCccHH
Confidence 34445778888888776666 44446543 1222111 111111 1233333568889999999988
Q ss_pred HHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHHHHcC
Q psy9584 381 ESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILN 417 (466)
Q Consensus 381 ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly~~~g 417 (466)
||. ++|++..|+.+.+.+..-+.+--+.-+
T Consensus 331 eAi-------nIAr~L~D~d~~~~Al~k~~eevksn~ 360 (434)
T COG4499 331 EAI-------NIARNLDDNDLTLLALTKLYEEVKSNT 360 (434)
T ss_pred HHh-------hHHHhCCcchhHHHHHHHHHHHHhccc
Confidence 875 578899999888888744444444433
No 240
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.81 E-value=45 Score=24.27 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHH
Q psy9584 66 SVLAELYETQLLSNLSKPILRRAIE 90 (466)
Q Consensus 66 slLa~~y~~~~~~~~ak~~l~k~i~ 90 (466)
.-||+.|...|++..|+.+|...++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 241
>KOG2581|consensus
Probab=31.97 E-value=4.5e+02 Score=28.54 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=81.6
Q ss_pred cchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhh-------hhhhHHHhHHHHHHHHH----HhcCChHHHHHhh
Q psy9584 318 SHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE-------DLNRLTSCSLVLLGHIF----LSLGNHRESMNMV 386 (466)
Q Consensus 318 ~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~-------~l~~l~~~~l~llg~i~----l~~~~~~ea~~~~ 386 (466)
+.+..|-+.|-.|-....|..|+.|++++.+++.-|..+ ..+.+.++.-+++|.|= +++-+. ++.+
T Consensus 242 snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~---~ksL 318 (493)
T KOG2581|consen 242 SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGM---RKSL 318 (493)
T ss_pred ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccH---HHHH
Confidence 334668888888888889999999999999999988832 33566777777777764 344333 4556
Q ss_pred HHHHHHhh--cCCChhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy9584 387 TPAMQLAS--KIPDVHVQLWASAILKDLYKILNDPVRENEALQMHCNFSQMLLKDHFQSSERAE 448 (466)
Q Consensus 387 ~~a~~lAk--K~~D~~~qlw~~~lL~~ly~~~g~~~~~~e~~~~~~~~s~~l~~~~~~~~~~~~ 448 (466)
.|=.+|++ |.+|. ..+.++....|+.=++-.-|++-...++.+|+.-++.+++.=
T Consensus 319 ~~Yf~Lt~AVr~gdl-------kkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsY 375 (493)
T KOG2581|consen 319 RPYFKLTQAVRLGDL-------KKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKISLSY 375 (493)
T ss_pred HHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhheeeee
Confidence 67666665 34442 233344444455445555677778888888888877765543
No 242
>KOG1915|consensus
Probab=31.72 E-value=2.8e+02 Score=30.69 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccc-
Q psy9584 36 NIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEK- 114 (466)
Q Consensus 36 N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~- 114 (466)
+.|.|+..++-|+. ++.-.+.++-..++- +.=...|.+..++++.++-++.++|.+.|.-=..|+.+.....++
T Consensus 486 dtdRaRaifelAi~--qp~ldmpellwkaYI---dFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~ 560 (677)
T KOG1915|consen 486 DTDRARAIFELAIS--QPALDMPELLWKAYI---DFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDE 560 (677)
T ss_pred hHHHHHHHHHHHhc--CcccccHHHHHHHhh---hhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccccccc
Confidence 46777777776644 332223333333221 111235678889999999999999999999989998877666666
Q ss_pred ----------cHHHHHHHHHhHHHHHHHhcChHHHH
Q psy9584 115 ----------DYELASSLLGVGVDYANISNAQYTRV 140 (466)
Q Consensus 115 ----------D~~~A~~~L~~g~~~A~~~~d~~~~~ 140 (466)
....|-.+++.+..+-++.+++.=++
T Consensus 561 ~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~ 596 (677)
T KOG1915|consen 561 DLAELEITDENIKRARKIFERANTYLKESTPKEERL 596 (677)
T ss_pred chhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67788888888888888888875443
No 243
>KOG2796|consensus
Probab=31.02 E-value=6e+02 Score=26.18 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHH
Q psy9584 66 SVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLS 145 (466)
Q Consensus 66 slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls 145 (466)
+.+++|++=.+.|-....++.+-|+- ++.-.-.+...|+.+.+--||..+|-.+.+.--..+...+.-.-.++-.-.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777677787777888888873 233445667788999999999999998888777777776665555555555
Q ss_pred HHHHHhcccCccHHHHHHHHHhhHhhh
Q psy9584 146 RCMLLLIDKKVNDAVQLLTQAGYQVEN 172 (466)
Q Consensus 146 ~~~~ll~~~~~~~v~~al~~~~~l~~~ 172 (466)
.+.+++...+..+..+....|-...++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC
Confidence 556667777776666666666444443
No 244
>KOG3617|consensus
Probab=30.78 E-value=4e+02 Score=31.56 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhc-----CCChhHHHHHHHHH---------HHHH
Q psy9584 348 ETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASK-----IPDVHVQLWASAIL---------KDLY 413 (466)
Q Consensus 348 e~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK-----~~D~~~qlw~~~lL---------~~ly 413 (466)
++-++|+..++.- + -..|+..|-+.|+..+|.+..+.|-.+.+- -+|..-++|...++ +.-|
T Consensus 956 kAa~iA~esgd~A--A--cYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen 956 KAARIAEESGDKA--A--CYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred HHHHHHHhcccHH--H--HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence 3445565555532 2 247899999999999999998888777663 37888899998665 3456
Q ss_pred HHcC-CchHHHHHHHHHHHHHHHH
Q psy9584 414 KILN-DPVRENEALQMHCNFSQML 436 (466)
Q Consensus 414 ~~~g-~~~~~~e~~~~~~~~s~~l 436 (466)
..+| +..+|-+-|+--.-+++.|
T Consensus 1032 Ee~g~~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HHcchhhhHHHHHHHhhcchHHHH
Confidence 6666 6677766555544444444
No 245
>KOG1127|consensus
Probab=30.41 E-value=5.8e+02 Score=30.79 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=70.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHH
Q psy9584 28 NILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLA 107 (466)
Q Consensus 28 ~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA 107 (466)
.+++-.-+|...|-.+++-|+.... --|++...|++.|...|.+..+..++.|++++.-. .|..+ |-.|
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dP-------kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~--s~y~~--fk~A 637 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDP-------KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL--SKYGR--FKEA 637 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCc-------hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH--hHHHH--HHHH
Confidence 3555566777777777777655322 24678889999999999999999999999998843 33332 3457
Q ss_pred HHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 108 QIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 108 ~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
-+-..-|.|..|+..|+.++.-+..
T Consensus 638 ~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 638 VMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 7778889999999999998776653
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=29.33 E-value=3.5e+02 Score=22.78 Aligned_cols=120 Identities=21% Similarity=0.201 Sum_probs=76.9
Q ss_pred cchhHHHhhcCCCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccch
Q psy9584 2 CIQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLS 81 (466)
Q Consensus 2 ai~CLeAvl~~~~~p~~Ea~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~a 81 (466)
|+.+++.++...+.....+......+.. +....+.+.|..++.++....... ...+...++.+|...+.+..+
T Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 149 ALELYEKALELDPELNELAEALLALGAL-LEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHhhhH-HHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHH
Confidence 3455554443111113344444444443 456678999999999987754442 566788899999999988888
Q ss_pred hHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 82 KPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 82 k~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
...+.++++.... .....+.++.++...+++..|...++........
T Consensus 222 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPD----NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcc----cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888888887765 2233334455555556788888888777766554
No 247
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=28.83 E-value=1.8e+02 Score=29.08 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=58.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hCCccchhHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q psy9584 31 LTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYET-QLLSNLSKPILRRAIELSQ-HSIYWHCRLIFQLAQ 108 (466)
Q Consensus 31 ~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~-~~~~~~ak~~l~k~i~~s~-~~~~W~~~~~fqLA~ 108 (466)
...|...+.||..+++|. + .....++-+--.|.+-+. .++...|..|+..++.... +..+|..-+-|.+
T Consensus 11 ~~r~~g~~~aR~vF~~a~---~----~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-- 81 (280)
T PF05843_consen 11 MRRTEGIEAARKVFKRAR---K----DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-- 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHH---C----CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--
T ss_pred HHHhCChHHHHHHHHHHH---c----CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--
Confidence 355667999999999984 2 222334445556777555 4556669999999998886 5578887777753
Q ss_pred HhcccccHHHHHHHHHhHHHH
Q psy9584 109 IHAGEKDYELASSLLGVGVDY 129 (466)
Q Consensus 109 i~~~~~D~~~A~~~L~~g~~~ 129 (466)
..+|.+.|-.+++.++..
T Consensus 82 ---~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 82 ---KLNDINNARALFERAISS 99 (280)
T ss_dssp ---HTT-HHHHHHHHHHHCCT
T ss_pred ---HhCcHHHHHHHHHHHHHh
Confidence 347888888888887654
No 248
>KOG0687|consensus
Probab=28.68 E-value=5.1e+02 Score=27.34 Aligned_cols=144 Identities=17% Similarity=0.071 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHH------HHHHHHHHHHhCCccchhHHHHHHHHhhchh--hhhHHHHHHHHHH
Q psy9584 37 IDLARNHLEQAWHLSQSINAFDDVKFEA------ASVLAELYETQLLSNLSKPILRRAIELSQHS--IYWHCRLIFQLAQ 108 (466)
Q Consensus 37 ~~~A~~hLeka~~L~~~~~~~~d~K~~a------~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~--~~W~~~~~fqLA~ 108 (466)
..+++.+|..++.--.+-| +.+.-++. +.+|..+ .+.|. ...+. |...||.+..+ ..-.-......|+
T Consensus 37 ~~~~~e~l~~~Ird~~Map-~Ye~lce~~~i~~D~~~l~~m-~~~ne-eki~e-ld~~iedaeenlGE~ev~ea~~~kae 112 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMAP-LYEYLCESLVIKLDQDLLNSM-KKANE-EKIKE-LDEKIEDAEENLGESEVREAMLRKAE 112 (393)
T ss_pred CHHHHHHHHHHHHhcccch-HHHHHHhhcceeccHHHHHHH-HHhhH-HHHHH-HHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 5678888888865322222 22222221 1122222 22221 11222 45566666533 1222333445788
Q ss_pred HhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhhHHHHHH
Q psy9584 109 IHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFL 188 (466)
Q Consensus 109 i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~L~~~~~ 188 (466)
-++.=||-++|++.+.+-.+-+-..|.+ |.++|.+++.=+ .-.|.+-|.+.+..+..+++. -|+=..+-.+++|.=
T Consensus 113 YycqigDkena~~~~~~t~~ktvs~g~k-iDVvf~~iRlgl--fy~D~~lV~~~iekak~liE~-GgDWeRrNRlKvY~G 188 (393)
T KOG0687|consen 113 YYCQIGDKENALEALRKTYEKTVSLGHK-IDVVFYKIRLGL--FYLDHDLVTESIEKAKSLIEE-GGDWERRNRLKVYQG 188 (393)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHH--hhccHHHHHHHHHHHHHHHHh-CCChhhhhhHHHHHH
Confidence 8888899999999999999988888876 889998777632 233456677888889999986 455455567777654
No 249
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.63 E-value=95 Score=26.53 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=34.9
Q ss_pred hhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy9584 321 LRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTS 363 (466)
Q Consensus 321 L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~ 363 (466)
=|+--.+..|+.++..|++.+|.+.+.++-+.+....++.|.+
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~A 99 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLA 99 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3455557899999999999999999999988777777776654
No 250
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=27.00 E-value=5.5e+02 Score=25.57 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhch----hh
Q psy9584 21 RTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQH----SI 96 (466)
Q Consensus 21 ~~rLrla~lL~~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~----~~ 96 (466)
.++.+.|.+=++..+|.+.|...+|+|+..- -.+..|...++ +.....|+...++.++.+++..--. -.
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~~~~~~Y~--~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~ 108 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDPDFWLEYL--DFLIKLNDINNARALFERAISSLPKEKQSKK 108 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-HHHHHHHH--HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHH--HHHHHhCcHHHHHHHHHHHHHhcCchhHHHH
Confidence 4467778874444567777999999997531 22456666655 6667788889999999998876421 23
Q ss_pred hhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 97 YWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 97 ~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.|.--+.|. ...||.+...++.+...++..
T Consensus 109 iw~~~i~fE-----~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 109 IWKKFIEFE-----SKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHHHH-----HHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHHHhh
Confidence 555444443 334677766666665555544
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=26.68 E-value=6.4e+02 Score=24.98 Aligned_cols=70 Identities=19% Similarity=0.068 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHH
Q psy9584 59 DVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVD 128 (466)
Q Consensus 59 d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~ 128 (466)
+....+..-.|++-.+.|.+..|...+.+........-....+..+.-|.++...|+-..|++.|+..++
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666778888888888888888888766644211111344455779999999999999999999888
No 252
>KOG1550|consensus
Probab=26.41 E-value=4.8e+02 Score=28.88 Aligned_cols=96 Identities=21% Similarity=0.177 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHH----HHhccccchHHHHHHHHHHHHHHHHhCCc-----cchhHHHHH
Q psy9584 21 RTHLQLGNILLTH----TKNIDLARNHLEQAWH----LSQSINAFDDVKFEAASVLAELYETQLLS-----NLSKPILRR 87 (466)
Q Consensus 21 ~~rLrla~lL~~~----T~N~~~A~~hLeka~~----L~~~~~~~~d~K~~a~slLa~~y~~~~~~-----~~ak~~l~k 87 (466)
....++|.++++= |.|.+.|..+|++|.. -..++. -.|++-||++|.+..-. ..++.++.+
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~ 318 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL------PPAQYGLGRLYLQGLGVEKIDYEKALKLYTK 318 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC------CccccHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 3455666665554 7899999999999866 222221 22788999999996522 225555555
Q ss_pred HHHhhchhhhhHHHHHHHHHHHhcc---cccHHHHHHHHHhHHH
Q psy9584 88 AIELSQHSIYWHCRLIFQLAQIHAG---EKDYELASSLLGVGVD 128 (466)
Q Consensus 88 ~i~~s~~~~~W~~~~~fqLA~i~~~---~~D~~~A~~~L~~g~~ 128 (466)
+-+.- ++. -.|.+|.++.. ++|+..|.+.+..++.
T Consensus 319 aA~~g--~~~----a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 319 AAELG--NPD----AQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHhcC--Cch----HHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 54443 322 23345665532 5699999999887654
No 253
>KOG4340|consensus
Probab=26.31 E-value=2.3e+02 Score=29.62 Aligned_cols=59 Identities=19% Similarity=-0.046 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHH
Q psy9584 62 FEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLG 124 (466)
Q Consensus 62 ~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~ 124 (466)
-.+.|+||-||+....+..+-.-..+-.... ..+=.|||+. |+.....+-|..|+..+.
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~--AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQ--AQSLYKACIYADALRVAF 102 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence 3578999999999998877666555544443 3445566665 665555566666655443
No 254
>PTZ00131 glycophorin-binding protein; Provisional
Probab=25.77 E-value=1e+02 Score=30.98 Aligned_cols=26 Identities=19% Similarity=0.537 Sum_probs=23.6
Q ss_pred hhHhhhhccccchHhhHHHHHHHHHH
Q psy9584 167 GYQVENWTGSQYQKEYLKVFFLVLQV 192 (466)
Q Consensus 167 ~~l~~~~~g~~~~~e~L~~~~~~L~i 192 (466)
||+...|...|+|+..|.+||++|.-
T Consensus 166 gqimka~aadpeyrkhl~i~y~ilt~ 191 (413)
T PTZ00131 166 GQIMKAWAADPEYRKHLEIFYKILTH 191 (413)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHcc
Confidence 89999999999999999999997653
No 255
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.20 E-value=1.5e+02 Score=24.60 Aligned_cols=48 Identities=21% Similarity=0.075 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhchhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Q psy9584 82 KPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANIS 133 (466)
Q Consensus 82 k~~l~k~i~~s~~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~~~ 133 (466)
..-+++.++...+. ...+|++|..+...|+++.|++.|-..+.-...-
T Consensus 8 ~~al~~~~a~~P~D----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDD----LDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 34566667665444 4778899999999999999998887777665544
No 256
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=24.89 E-value=1e+02 Score=37.49 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=44.2
Q ss_pred hHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9584 360 RLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413 (466)
Q Consensus 360 ~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~qlw~~~lL~~ly 413 (466)
|-.+-...++|..|+-.|.+..|.+....|..++|+++|. +|-++-|+.+-
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~---lW~a~alEg~~ 289 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDY---LWLASALEGIA 289 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcH---hhhHHHHHHHH
Confidence 3445556699999999999999999999999999999997 99888887663
No 257
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=24.73 E-value=4.6e+02 Score=22.68 Aligned_cols=70 Identities=23% Similarity=0.158 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHHHhhch-------hhhhHHH-----------HHHHHHHHhcccccHHHHHHHH
Q psy9584 62 FEAASVLAELYETQLLSNLSKPILRRAIELSQH-------SIYWHCR-----------LIFQLAQIHAGEKDYELASSLL 123 (466)
Q Consensus 62 ~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~-------~~~W~~~-----------~~fqLA~i~~~~~D~~~A~~~L 123 (466)
|+...--|+--...+..+.+...+++++++.++ ...|... ....++..+...||+..|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 333333344444455555566677777777751 1134332 2334677777888999998888
Q ss_pred HhHHHHHH
Q psy9584 124 GVGVDYAN 131 (466)
Q Consensus 124 ~~g~~~A~ 131 (466)
+.++...-
T Consensus 86 ~~~l~~dP 93 (146)
T PF03704_consen 86 QRALALDP 93 (146)
T ss_dssp HHHHHHST
T ss_pred HHHHhcCC
Confidence 88776543
No 258
>KOG3081|consensus
Probab=24.54 E-value=7.8e+02 Score=25.27 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=58.8
Q ss_pred HHHHhcccccHHHHHHHHHhHHHHHHHhcChHHHHHHHHHHHH-----H-HhcccCccHHHHHHHHHhhHh-hhhccccc
Q psy9584 106 LAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCM-----L-LLIDKKVNDAVQLLTQAGYQV-ENWTGSQY 178 (466)
Q Consensus 106 LA~i~~~~~D~~~A~~~L~~g~~~A~~~~d~~~~~lf~ls~~~-----~-ll~~~~~~~v~~al~~~~~l~-~~~~g~~~ 178 (466)
=|.+++.++||+.|++.++.|-++-. -.-.++++.+.-+.= + -|++-+. +.+|++.-+-| .-..|.-.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~ide---d~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEA--AALNVQILLKMHRFDLAEKELKKMQQIDE---DATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhccchh
Confidence 48889999999999999998655433 112233333332221 1 2222222 34456543333 44455555
Q ss_pred hHhhHHHHHHHHH------------HHhhhhhhhhhhhhHHHHHH
Q psy9584 179 QKEYLKVFFLVLQ------------VCHYLMAGQVKSVKPCLKQL 211 (466)
Q Consensus 179 ~~e~L~~~~~~L~------------i~~~l~~g~v~~~k~~lkqL 211 (466)
+.+...+|--+-+ .||.+..|....+...|++.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 6667777665433 56667777778888877654
No 259
>KOG2796|consensus
Probab=24.52 E-value=6e+02 Score=26.20 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=71.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhchhhhhHHHHHH--HHHHHhcccccHHHHHHHHHhHHHHHHH
Q psy9584 55 NAFDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF--QLAQIHAGEKDYELASSLLGVGVDYANI 132 (466)
Q Consensus 55 ~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~~~~~W~~~~~f--qLA~i~~~~~D~~~A~~~L~~g~~~A~~ 132 (466)
+.+.+.+-...+-|+++-++-|+...++....+.-.-..-.-..+++..- ..|.+|-.++||.+|.....++.....+
T Consensus 205 ~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 205 KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence 44558888899999999999999887887666433333211112222222 4678889999999999999887765432
Q ss_pred ----hcChHHHHHHHHHHHHHHhcccCccHHHHHHHHHhhHhhhhccccchHhh
Q psy9584 133 ----SNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEY 182 (466)
Q Consensus 133 ----~~d~~~~~lf~ls~~~~ll~~~~~~~v~~al~~~~~l~~~~~g~~~~~e~ 182 (466)
+|.+.+=.+. .+....|+.++.++.+..+|. .-++.
T Consensus 285 ~~~a~NnKALcllY-------------lg~l~DAiK~~e~~~~~~P~~-~l~es 324 (366)
T KOG2796|consen 285 NAVANNNKALCLLY-------------LGKLKDALKQLEAMVQQDPRH-YLHES 324 (366)
T ss_pred chhhhchHHHHHHH-------------HHHHHHHHHHHHHHhccCCcc-chhhh
Confidence 3444322222 223345667777777775543 23443
No 260
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.09 E-value=1.3e+02 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=22.0
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhh
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAE 356 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~ 356 (466)
|--|+=.+..++|.+|+++....|++....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 334555589999999999999999976443
No 261
>PRK12798 chemotaxis protein; Reviewed
Probab=23.77 E-value=6.9e+02 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChHHHHHhhHHHHHHh
Q psy9584 366 LVLLGHIFLSLGNHRESMNMVTPAMQLA 393 (466)
Q Consensus 366 l~llg~i~l~~~~~~ea~~~~~~a~~lA 393 (466)
|+.+..--+..|+.+-|.-....|..++
T Consensus 260 YL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 260 YLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 4444444445555555555555555554
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=4.6e+02 Score=27.04 Aligned_cols=93 Identities=20% Similarity=0.028 Sum_probs=56.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhCCccchhHHHHH---------------HHHhhc---
Q psy9584 32 THTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRR---------------AIELSQ--- 93 (466)
Q Consensus 32 ~~T~N~~~A~~hLeka~~L~~~~~~~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k---------------~i~~s~--- 93 (466)
..-+|..+|...+..++...... -++..+||+||...|....+..+|.. -|++..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 35567888888888887765542 46777999999999988666655543 122221
Q ss_pred ------------hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 94 ------------HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 94 ------------~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
.--.-.....|.||..+...||++.|++.|=..+...+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 00012345556666666666666666666555544433
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=23.63 E-value=7.6e+02 Score=24.84 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=66.3
Q ss_pred HHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHH
Q psy9584 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQ 402 (466)
Q Consensus 323 a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~q 402 (466)
+.-.|=.|+-....|++.+|.+++.... ...-.+..+-.+.+.++..++..+++.+|..++..=+.+=-.+||+..-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~---~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALD---SRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4455888888899999999999998766 4556677778999999999999999999999999999998888887443
Q ss_pred H
Q psy9584 403 L 403 (466)
Q Consensus 403 l 403 (466)
.
T Consensus 111 ~ 111 (254)
T COG4105 111 Y 111 (254)
T ss_pred H
Confidence 3
No 264
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.42 E-value=7.3e+02 Score=24.57 Aligned_cols=140 Identities=21% Similarity=0.210 Sum_probs=75.0
Q ss_pred HHHHHHHHHhCC-ccchhHHHHHHHHhhc--hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHH---HHH--------
Q psy9584 66 SVLAELYETQLL-SNLSKPILRRAIELSQ--HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVD---YAN-------- 131 (466)
Q Consensus 66 slLa~~y~~~~~-~~~ak~~l~k~i~~s~--~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~---~A~-------- 131 (466)
.-|++++...++ -|.-+.+++++|.-|+ +.+..+..+...+|+.+..+++|..|..++=-|-+ .+.
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~ 132 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWS 132 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 355666666553 3456678888888885 57788899999999999999999999988854311 111
Q ss_pred HhcCh-HHHHHHHHHHHHH-HhcccCccHHHHHHHH-HhhHhhh---h----ccccchHhhHHHHHHHHHHHhhhhhhhh
Q psy9584 132 ISNAQ-YTRVLFLLSRCML-LLIDKKVNDAVQLLTQ-AGYQVEN---W----TGSQYQKEYLKVFFLVLQVCHYLMAGQV 201 (466)
Q Consensus 132 ~~~d~-~~~~lf~ls~~~~-ll~~~~~~~v~~al~~-~~~l~~~---~----~g~~~~~e~L~~~~~~L~i~~~l~~g~v 201 (466)
..|.+ ...++ ++|+-+ +|.-.+......++.. +.++.++ . .+.|...+.|.+..+.+.+|..-
T Consensus 133 ~~~~~~e~dlf--i~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~----- 205 (260)
T PF04190_consen 133 TKGYPSEADLF--IARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD----- 205 (260)
T ss_dssp HHTSS--HHHH--HHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-----
T ss_pred HhcCCcchhHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC-----
Confidence 22222 22222 334433 3333333322333222 2232222 1 13455567899988888888532
Q ss_pred hhhhHHHHHHHHH
Q psy9584 202 KSVKPCLKQLQQS 214 (466)
Q Consensus 202 ~~~k~~lkqLq~~ 214 (466)
..+..+.|...
T Consensus 206 --~~~~F~~L~~~ 216 (260)
T PF04190_consen 206 --NLPLFKKLCEK 216 (260)
T ss_dssp ---HHHHHHHHHH
T ss_pred --cHHHHHHHHHH
Confidence 23555555444
No 265
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.46 E-value=1.8e+02 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=21.1
Q ss_pred HHHHH-HhHHHhhhhcHHHHHHHHHHHHH
Q psy9584 324 AAYYV-QGLQSFFQARYNEAKRYLRETLK 351 (466)
Q Consensus 324 ~~~yv-~~~~~~~~~~~~eAk~~lre~lk 351 (466)
++.++ .|+..=-.|+|.+|..+|++++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444 67766788889999998888877
No 266
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=22.31 E-value=1.9e+02 Score=28.61 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=37.2
Q ss_pred hHHHhhc-CCCChhHHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHhc
Q psy9584 5 CLQAVFN-FKPPPRVEARTHLQLGNILLT--------HTKNIDLARNHLEQAWHLSQS 53 (466)
Q Consensus 5 CLeAvl~-~~~~p~~Ea~~rLrla~lL~~--------~T~N~~~A~~hLeka~~L~~~ 53 (466)
++..+.. -.+|+.+.||-+.-.|-.|+. -.++...|..||++|..|=.+
T Consensus 153 ~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 153 VFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 3445543 467999999999999988763 445678999999999887333
No 267
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=22.12 E-value=5.4e+02 Score=23.80 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=54.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCchH---HHHHHhhhCCC-ccccccchhhHHHHHHHhHHHhhhhcHHHHHHHHHH-----
Q psy9584 278 ERELWTFANLNLAIVYLRGKREGD---FAALLERINPE-TLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRE----- 348 (466)
Q Consensus 278 ~~~~~~~~~lNlai~Yl~~~~~~e---~~~~l~~i~~~-~~~~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre----- 348 (466)
+...|..||+- ..++ .-+.++.|+.- .+ +...+||.-+ +-.+.......-.+-|+.++-+
T Consensus 35 ~E~NWvICNii---------Daa~C~yvv~~LdsIGkiFDi-s~C~NlKrVi-~C~~~~n~~se~vD~ALd~lv~~~kkD 103 (161)
T PF09205_consen 35 KEYNWVICNII---------DAADCDYVVETLDSIGKIFDI-SKCGNLKRVI-ECYAKRNKLSEYVDLALDILVKQGKKD 103 (161)
T ss_dssp HHHTHHHHHHH---------HH--HHHHHHHHHHHGGGS-G-GG-S-THHHH-HHHHHTT---HHHHHHHHHHHHTT-HH
T ss_pred cccceeeeecc---------hhhchhHHHHHHHHHhhhcCc-hhhcchHHHH-HHHHHhcchHHHHHHHHHHHHHhccHH
Confidence 45778888876 2233 45666666643 33 4566676655 3333322222333344444431
Q ss_pred -HHHhhhhhh-hhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHH
Q psy9584 349 -TLKMANAED-LNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQ 391 (466)
Q Consensus 349 -~lk~a~~~~-l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~ 391 (466)
--++.++.. +....+..|+=++..|-..|+.++|.+.++.|+.
T Consensus 104 qLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 104 QLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 112222221 3455566788999999999999999999998874
No 268
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=22.00 E-value=3e+02 Score=27.37 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhhhh-hhhhHHHhHHHHHHHHHH--hcCChHHHHHhhHHHHHHhh
Q psy9584 339 YNEAKRYLRETLKMANAE-DLNRLTSCSLVLLGHIFL--SLGNHRESMNMVTPAMQLAS 394 (466)
Q Consensus 339 ~~eAk~~lre~lk~a~~~-~l~~l~~~~l~llg~i~l--~~~~~~ea~~~~~~a~~lAk 394 (466)
..+|++.|++|+++|+.+ .-..-+-.+|.|.-.+|+ -.++.++|.++++.|.+-|-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 357899999999998872 112222222333333443 56788888888888887774
No 269
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.59 E-value=3.5e+02 Score=20.94 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=44.7
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHh
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNM 385 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~ 385 (466)
+..|+..|..++|=||=+.+.+.=+.+....-.-+.+...+--|...++.||.+-|..+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 44566679999999999999998886665666666777777777788889998888765
No 270
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=21.57 E-value=4.7e+02 Score=25.15 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=43.7
Q ss_pred HHHHHhhhCCC-ccc---------cccchhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHh-------------------
Q psy9584 302 FAALLERINPE-TLT---------SHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKM------------------- 352 (466)
Q Consensus 302 ~~~~l~~i~~~-~~~---------~~~~~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~------------------- 352 (466)
||..+-.+.|. |.+ .....+.|-++|++++ ....-+.-|+.-|...++-
T Consensus 4 ~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl--~~~~Pf~~A~~NL~~lf~~~~~~~~~~~~~~~~~~~~~ 81 (278)
T PF10373_consen 4 YYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL--AVRIPFPSARENLQKLFEKAQSHLSNKKSSESNNKSSS 81 (278)
T ss_dssp HHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH--SSSB--HHHHHHHHHHHHH---------HTTS------
T ss_pred HHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHhcccchhccchhhcccccc
Confidence 55555555555 442 2345566888888888 5566667777777776665
Q ss_pred -hhhhhhhhHHHhHHHHHHHHHHhc
Q psy9584 353 -ANAEDLNRLTSCSLVLLGHIFLSL 376 (466)
Q Consensus 353 -a~~~~l~~l~~~~l~llg~i~l~~ 376 (466)
.......++...-+.+.|.+|...
T Consensus 82 ~~~~~~~~~~~~~Fl~l~~~l~~~~ 106 (278)
T PF10373_consen 82 KSRSELEERFISYFLRLHGILFTKI 106 (278)
T ss_dssp --SS--HHHHHHHHHHHHHHHHHT-
T ss_pred ccccchHHHHHHHHHHHHHHHcCCC
Confidence 223345677777788899998874
No 271
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.55 E-value=9.3e+02 Score=25.86 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHhhc-----hhhhhHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHH
Q psy9584 57 FDDVKFEAASVLAELYETQLLSNLSKPILRRAIELSQ-----HSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYAN 131 (466)
Q Consensus 57 ~~d~K~~a~slLa~~y~~~~~~~~ak~~l~k~i~~s~-----~~~~W~~~~~fqLA~i~~~~~D~~~A~~~L~~g~~~A~ 131 (466)
+.-+=|=+.-.|.|+++..|+|-.|..++.. |++.+ ..+.=+...+.-.|-.|+--+.|..|++.+..++.+-.
T Consensus 117 ~~~LGYFSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 117 YKMLGYFSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHhhHHHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555667789999999999887776654 22232 12222334444567777888999999999999998887
Q ss_pred Hhc--------------ChHHHHHHHHHHHHHHh
Q psy9584 132 ISN--------------AQYTRVLFLLSRCMLLL 151 (466)
Q Consensus 132 ~~~--------------d~~~~~lf~ls~~~~ll 151 (466)
+.. -+.=++++.++-++++-
T Consensus 196 r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~ 229 (404)
T PF10255_consen 196 RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLC 229 (404)
T ss_pred HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhC
Confidence 766 34456777777777655
No 272
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.01 E-value=1.4e+02 Score=23.01 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=24.6
Q ss_pred hhhHHHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhh
Q psy9584 320 SLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE 356 (466)
Q Consensus 320 ~L~a~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~ 356 (466)
....-..-|+|+ .-.|++++|++|+.+..+..+.+
T Consensus 22 D~~NhLqvI~gl--lqlg~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 22 DFLNHLQVIYGL--LQLGKYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 333444455666 67999999999999988866655
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=7.5e+02 Score=25.56 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=66.9
Q ss_pred HHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHH--------------H---
Q psy9584 327 YVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTP--------------A--- 389 (466)
Q Consensus 327 yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~--------------a--- 389 (466)
+-.|....-.+++.+|...+..+++.+++. +-..+.|...|+..|+.++|+..+.. +
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 445566688999999999999999988777 44566888899999998888776543 1
Q ss_pred -HHHhhcCCChh--HHHH--------HHHHHHHHHHHcCCchHHHHHH
Q psy9584 390 -MQLASKIPDVH--VQLW--------ASAILKDLYKILNDPVRENEAL 426 (466)
Q Consensus 390 -~~lAkK~~D~~--~qlw--------~~~lL~~ly~~~g~~~~~~e~~ 426 (466)
..=|.++||+. .+-| +.--|++.|...|+++.|.|-.
T Consensus 212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12245566432 2222 2356888999999999887733
No 274
>KOG1156|consensus
Probab=20.41 E-value=3.6e+02 Score=30.74 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=71.7
Q ss_pred HHHHHHhHHHhhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhHHH
Q psy9584 324 AAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403 (466)
Q Consensus 324 ~~~yv~~~~~~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~ql 403 (466)
+..|-.++-.|-+++|..-++.....|+-- -=++.+|-+.|-....+|+.++|-+.|.-|+--.-||+ |+.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---vCw 78 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---VCW 78 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC------CccchhHHhccchhhcccchHHHHHHHHHHhccCcccc---hhH
Confidence 445777888888999988888888888711 12455677889999999999999999999888555554 333
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q psy9584 404 WASAILKDLYKILNDPVRENEALQMHCNF 432 (466)
Q Consensus 404 w~~~lL~~ly~~~g~~~~~~e~~~~~~~~ 432 (466)
++|-=+||.-+|+++|.-.|+.-...
T Consensus 79 ---Hv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 79 ---HVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred ---HHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 45555688888999888877665444
No 275
>KOG4507|consensus
Probab=20.07 E-value=1.4e+02 Score=33.70 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=63.6
Q ss_pred hhhhcHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHHHHHhcCChHHHHHhhHHHHHHhhcCCChhH-HHHHHHHHHHH
Q psy9584 334 FFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHV-QLWASAILKDL 412 (466)
Q Consensus 334 ~~~~~~~eAk~~lre~lk~a~~~~l~~l~~~~l~llg~i~l~~~~~~ea~~~~~~a~~lAkK~~D~~~-qlw~~~lL~~l 412 (466)
=-+|+..+|...++-++-.++...- -..++.+|.+..|.|-+.+|--.+.+|..=|.-.-..++ .=-++.+|.+.
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~k----di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~ 299 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNK----DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEY 299 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCcccc----cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhh
Confidence 4789999999999999988876411 123557899999999999999999999988776544333 33445667676
Q ss_pred HHHcCCchHHHH
Q psy9584 413 YKILNDPVRENE 424 (466)
Q Consensus 413 y~~~g~~~~~~e 424 (466)
.+....++.+..
T Consensus 300 N~S~~~ydha~k 311 (886)
T KOG4507|consen 300 NHSVLCYDHALQ 311 (886)
T ss_pred hhhhhhhhhhhc
Confidence 666666665554
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=20.02 E-value=1.9e+02 Score=21.81 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCChHHHHHhhHHHHHH
Q psy9584 365 SLVLLGHIFLSLGNHRESMNMVTPAMQL 392 (466)
Q Consensus 365 ~l~llg~i~l~~~~~~ea~~~~~~a~~l 392 (466)
.+..++--++++|++.+|.+.+...+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3556777789999999999999887765
Done!