RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9584
(466 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 2e-10
Identities = 83/502 (16%), Positives = 148/502 (29%), Gaps = 139/502 (27%)
Query: 4 QCLQAVFN-FKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKF 62
Q L F+ +L+ +I H L + + + I +
Sbjct: 82 QVLNLCLTEFE-------NCYLEGNDI---HALAAKLLQENDTTLVKTKELIKNY----I 127
Query: 63 EAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIF--QLAQIHAGE-KDY--E 117
A + + S L RA+ + IF Q G DY E
Sbjct: 128 TARIMAK-----RPFDKKSNSALFRAVGEGNAQLV----AIFGGQ------GNTDDYFEE 172
Query: 118 LASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENW---T 174
L L Y + L S L + + DA ++ TQ G + W
Sbjct: 173 LRD--L-----Y-QTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNILEWLENP 222
Query: 175 GSQYQKEYLK------VFFLVLQVCHYLMAGQVKSVKP------------CLKQLQQSIL 216
+ K+YL V+Q+ HY++ ++ P + L ++
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 217 TIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIG---HLKFFGVTGTAGTEVE 273
+W S F + + ++ IG + + + T + +E
Sbjct: 283 IAETDSWES------------FF----VSVRKAITVLFFIGVRCY-EAYPNTSLPPSILE 325
Query: 274 RLSQERELWTFANLNLAIVYLRGKREGDFAALLERINPETLTSHSH---SLR--AAAYYV 328
+ E + L+I + + + N L + SL A V
Sbjct: 326 DSLENNE--GVPSPMLSI---SNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGAKNLVV 379
Query: 329 QG----LQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCS-LVLLGHIFLSLGN--HRE 381
G L LR+ K + D +R+ + + FL + + H
Sbjct: 380 SGPPQSLYGL--------NLTLRK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 382 SMNMVTPAMQLASK-IPDVHVQLWASAILKDLYKILNDPVRENEALQMHCNFSQMLLKDH 440
+ PA L +K + +V A D+ +I PV + F D
Sbjct: 431 LL---VPASDLINKDLVKNNVSFNAK----DI-QI---PV--------YDTFDG---SDL 468
Query: 441 FQSSERAEHNLINCIDGTFTIP 462
S +++CI +P
Sbjct: 469 RVLSGSISERIVDCI---IRLP 487
Score = 37.3 bits (86), Expect = 0.012
Identities = 32/197 (16%), Positives = 53/197 (26%), Gaps = 92/197 (46%)
Query: 276 SQE--------------RELWTFANLNLAIVYLRGKREGDFAAL-LERINPETLTSH--- 317
SQE +++W A+ + Y G F+ L + NP LT H
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY------G-FSILDIVINNPVNLTIHFGG 1678
Query: 318 --SHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMAN-----------AEDLNR---- 360
+R + + + K + K N L+
Sbjct: 1679 EKGKRIR------ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 361 -----LTSCSL--------------VLLGHIFLSLGNHRE-SMNMVTPAMQLASKIPDVH 400
L + GH SLG E + A LAS
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGH---SLG---EYA------A--LAS------ 1772
Query: 401 VQLWASAI-LKDLYKIL 416
A + ++ L +++
Sbjct: 1773 ---LADVMSIESLVEVV 1786
Score = 28.1 bits (62), Expect = 8.8
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 12/34 (35%)
Query: 329 QGLQ----------SFFQAR--YNEAKRYLRETL 350
QG Q + A+ +N A + ++T
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY 1657
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 2e-09
Identities = 90/526 (17%), Positives = 157/526 (29%), Gaps = 150/526 (28%)
Query: 3 IQCLQAVFN----FKPPPRVEARTHLQLGNIL--LTHTKNI---------------DLAR 41
I+ ++N F + +L+L L L KN+ D+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 42 NHLEQA-------W-HLSQSINAFDDVKFEAASVLAELYETQLLSNLSKPILRRA----- 88
++ Q W +L +VL L +LL + R+
Sbjct: 173 SYKVQCKMDFKIFWLNLKN--------CNSPETVLEML--QKLLYQIDPNWTSRSDHSSN 222
Query: 89 IELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCM 148
I+L HSI R + + K YE + LL V + N+ NA+ F L C
Sbjct: 223 IKLRIHSIQAELRRLLK-------SKPYE--NCLL-V-LL--NVQNAKAWNA-FNL-SCK 267
Query: 149 LLLI--DKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKP 206
+LL K+V D + T +++ + + E + L + +V + P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 207 CL-----KQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWM--PKE--HLYVVVYLVTVIG 257
+ ++ + T W + + + + P E ++
Sbjct: 328 RRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMFD--------- 376
Query: 258 HLKFF--GVTGTAGTEVERLSQERELW---TFANLNLAIVYLRGKREGDFAALLERINPE 312
L F LS +W +++ + + L L+E+ P+
Sbjct: 377 RLSVFPPSAHIPTIL----LSL---IWFDVIKSDVMVVVNKLHKYS------LVEK-QPK 422
Query: 313 TLTSHSHSL----RAAAYYVQGLQSFFQARYNEAKRYLRETLK---------------MA 353
T S+ + L YN K + + L +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 354 NAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY 413
N E R+T L +FL + + + A + I + QL Y
Sbjct: 483 NIEHPERMT-----LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-------KFY 530
Query: 414 K---ILNDPVRENEALQMHCNFSQMLLKD--HFQSSERAEHNLINC 454
K NDP E L+ F + E NLI
Sbjct: 531 KPYICDNDPKYE------------RLVNAILDF--LPKIEENLICS 562
Score = 28.7 bits (63), Expect = 5.2
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 23/114 (20%)
Query: 23 HLQLGNILLTHTKNIDLARN-HLEQAWHLSQSINAFDDVKFEAASVLAEL-----YETQL 76
HL+ H + + L R L+ + L Q I + S+L L Y+ +
Sbjct: 480 HLKNIE----HPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 77 LSNLSKPILRRAIE-----LSQHS----IYWHCRLIFQLAQIHAGEKDYELASS 121
N P R + L + + L+ ++A + E +E A
Sbjct: 535 CDN--DPKYERLVNAILDFLPKIEENLICSKYTDLL-RIALMAEDEAIFEEAHK 585
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 49.6 bits (118), Expect = 1e-06
Identities = 40/337 (11%), Positives = 103/337 (30%), Gaps = 34/337 (10%)
Query: 63 EAASVLAELYETQLLSNLSKPILRRAIE-LSQHSIYWHCRLIFQLAQIHAGEKDYELASS 121
E ++ A++ + ++ + + A+E L Y L ++ + + + +
Sbjct: 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA 74
Query: 122 LLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKE 181
L+ A + + + L+ + +L + A + +A + Q
Sbjct: 75 LMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL--- 131
Query: 182 YLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWM 241
+ F + ++ ++ + + + ++ P
Sbjct: 132 PMHEFLVRIRAQLLWAWARLDEAEASARSG----IEVLSSYQPQQ--------------- 172
Query: 242 PKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVERLSQE----RELWTFANLNLAIVYL-RG 296
L + L+ + +E L + + AN I + G
Sbjct: 173 ---QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229
Query: 297 KREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE 356
+ L PE +H + + A+ L E + A +
Sbjct: 230 DKAAAANWLRHTAKPEFANNH---FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 286
Query: 357 DLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLA 393
L + +L+LL ++ G ++ ++ A++LA
Sbjct: 287 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323
Score = 41.1 bits (96), Expect = 6e-04
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Query: 306 LERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCS 365
++ I +T+ + ++LRA G +EA+R + L+ +
Sbjct: 4 IKDIREDTMHAEFNALRAQVAINDG-------NPDEAERLAKLALEEL-PPGWFYSRIVA 55
Query: 366 LVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEA 425
+LG + G S+ ++ Q+A + H LW+ ++ A
Sbjct: 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL---QTA 112
Query: 426 LQMHCNFSQMLLKDHFQSSERAEHNLIN 453
+ Q++ + H + E +
Sbjct: 113 WETQEKAFQLINEQHLEQLPMHEFLVRI 140
Score = 34.2 bits (78), Expect = 0.094
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 1/151 (0%)
Query: 16 PRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYETQ 75
P+ + + L L ++D AR+ L + +L + D A V ++
Sbjct: 170 PQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228
Query: 76 LLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNA 135
+ LR + + ++ +A+ ++E A +L + A
Sbjct: 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 288
Query: 136 QYTRVLFLLSRCMLLLIDKKVNDAVQLLTQA 166
LL L + +DA ++L A
Sbjct: 289 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
Score = 30.7 bits (69), Expect = 0.97
Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 4/154 (2%)
Query: 16 PRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSI-NAFDDVKFEAASVLAELYET 74
+ +Q IL + A E+A+ L + + A+L
Sbjct: 89 WHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147
Query: 75 QLLSNLSKPILRRAIE-LSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLG-VGVDYANI 132
+ ++ R IE LS + + + L Q D + A S L + N
Sbjct: 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207
Query: 133 SNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQA 166
R + + A L
Sbjct: 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 44.8 bits (106), Expect = 3e-05
Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 2/110 (1%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
A + A + ++ K++ + + L L L G
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK-VLFGLSWTLCKAGQ 276
Query: 379 HRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQM 428
+++ + + + + L+ +YK D + ++ L
Sbjct: 277 TQKAFQFIEEGLDHITARSHKFYKELFL-FLQAVYKETVDERKIHDLLSY 325
Score = 42.5 bits (100), Expect = 2e-04
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Query: 297 KREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE 356
LLE I + L+ + + +G+ F Q Y EA Y RE K
Sbjct: 76 GNRPTVTELLETIE-TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134
Query: 357 DLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWAS 406
+ + + + + SM + A+ + P ++ S
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184
Score = 33.6 bits (77), Expect = 0.13
Identities = 11/78 (14%), Positives = 32/78 (41%)
Query: 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRES 382
+ +V Y++A +L L++A +R + SL+ + + + G+ + +
Sbjct: 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241
Query: 383 MNMVTPAMQLASKIPDVH 400
+ A +++ +
Sbjct: 242 VEHFQKAAKVSREKVPDL 259
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 44.4 bits (105), Expect = 5e-05
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 1/111 (0%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
L Y GL Q++Y +A Y + + + ++ + L+ I LG
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279
Query: 379 HRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMH 429
++ + M + K DV LK LY D
Sbjct: 280 IDKAHEYHSKGMAYSQKAGDVIYLSEFE-FLKSLYLSGPDEEAIQGFFDFL 329
Score = 43.3 bits (102), Expect = 1e-04
Identities = 13/111 (11%), Positives = 38/111 (34%), Gaps = 1/111 (0%)
Query: 293 YLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKM 352
+R + + + LL I+ + + L + +G+ Q Y A ++ ++
Sbjct: 74 KMRIEEQPRLSDLLLEID-KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK 132
Query: 353 ANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403
+ + + + SM+ A ++ + +++L
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183
Score = 36.3 bits (84), Expect = 0.018
Identities = 15/108 (13%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 322 RAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRE 381
+ + +Y +A + ++ MA AE +L +L +G S + +
Sbjct: 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242
Query: 382 SMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMH 429
++ A+ + + + A ++ ++ L ++A + H
Sbjct: 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI---DKAHEYH 287
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 42.6 bits (101), Expect = 9e-05
Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 19/141 (13%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
+ +V + G++ LL + + +A Y +
Sbjct: 71 QVGMVE---RMAGNWDAARRCFLEERELLASLPED------PLAASANAYEVATVALHFG 121
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397
A++ ++L A D +C+ LG + N E+ A + +++
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181
Query: 398 DVHVQLWASAILKDLYKILND 418
D L L +
Sbjct: 182 DSEAVNELMTRLNGLEHHHHH 202
Score = 37.6 bits (88), Expect = 0.004
Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 24/170 (14%)
Query: 271 EVERLSQERELWTFANLNLAIVYLRGKREGDFA----------ALLERINPETLTSHSHS 320
+ + L + A L VY F ++ T +
Sbjct: 14 QAQALLAHPATASGARFMLGYVY---AFMDRFDEARASFQALQQQAQKSGDHTAEHRALH 70
Query: 321 LRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE-DLNRLTSCSLVLLGHIFLSLGNH 379
+ G ++ A+R E ++ + + S + + + L G+
Sbjct: 71 QVGMVERMAG-------NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 380 RESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMH 429
+ ++ A + D A L DL + + EA Q
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL---LEAQQHW 170
Score = 30.3 bits (69), Expect = 1.0
Identities = 10/102 (9%), Positives = 28/102 (27%), Gaps = 20/102 (19%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
+A V L GD A ++ + + + + +
Sbjct: 112 EVATVALH---FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK------- 161
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNH 379
EA+++ + + + + + L + +H
Sbjct: 162 NLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 29.9 bits (68), Expect = 1.3
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 341 EAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVH 400
EA Y + S + +LG+++ + E+ Q A K D
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 401 VQLWASAILKDLYKILNDPVRENEALQMH 429
+ A + + ++ + + A +
Sbjct: 64 AEHRALHQVGMVERMAGNW---DAARRCF 89
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 41.9 bits (99), Expect = 3e-04
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 23/152 (15%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
NL Y GDF + ++S ++ G
Sbjct: 228 NLGNTY---YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG------- 277
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397
++ +A + + TL +A + + S LG+ + L ++ + +A ++
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337
Query: 398 DVHVQLWASAILKDLYKILNDPVRENEALQMH 429
D + A L + + + AL+
Sbjct: 338 DRIGEARACWSLGNAHSAIGGH---ERALKYA 366
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/80 (22%), Positives = 33/80 (41%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
+A Y G F+ YN+A +Y + L +A + + + S LG+ +G
Sbjct: 82 LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR 141
Query: 379 HRESMNMVTPAMQLASKIPD 398
E+ + LA ++ D
Sbjct: 142 FDEAAICCERHLTLARQLGD 161
Score = 37.3 bits (87), Expect = 0.009
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 18/119 (15%)
Query: 315 TSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFL 374
+ S S A GL + + D L L G
Sbjct: 5 SMSSLSASAENVSSLGL-----GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLC 59
Query: 375 SLGNHRESMNMVTPAMQLASK-IPDVHVQLWASAILKDL---YKILNDPVRENEALQMH 429
+ G+ R + A+Q ++ + + SAI L Y L D N+A+Q H
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTL------SAIYSQLGNAYFYLGDY---NKAMQYH 109
Score = 35.7 bits (83), Expect = 0.031
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 20/116 (17%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
NL + G F AL + + + S Y +
Sbjct: 268 NLGNSH---IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH------- 317
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLA 393
+N A Y L +A + + LG+ ++G H ++ +QLA
Sbjct: 318 EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
Score = 32.7 bits (75), Expect = 0.25
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 30/164 (18%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQG------- 330
NL K G F L ++ + Y+ +G
Sbjct: 131 NLGNTL---KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN 187
Query: 331 ---LQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVT 387
+ A + +E LK+ + LG+ + LG+ + ++
Sbjct: 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247
Query: 388 PAMQLASKIPDVHVQLWASAI--LKDLYKILNDPVRENEALQMH 429
+++A + D + A L + + L +A + +
Sbjct: 248 ERLRIAREFGDRAAE--RRANSNLGNSHIFLGQF---EDAAEHY 286
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 41.1 bits (97), Expect = 6e-04
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 20/139 (14%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
NL Y G+F L ++ + + S Y +
Sbjct: 232 NLGNAY---IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ------- 281
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397
Y +A Y + L +A + + LG+ + +LGNH ++M+ ++++ ++
Sbjct: 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341
Query: 398 DVHVQLWASAILKDLYKIL 416
D +L A L DL +L
Sbjct: 342 DKSGELTARLNLSDLQMVL 360
Score = 40.4 bits (95), Expect = 0.001
Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 23/152 (15%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
NL + G+F + + + ++S AY G
Sbjct: 192 NLGNTH---YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG------- 241
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397
+ A Y ++TL +A + + S LG+ + L ++ ++++ + +A ++
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301
Query: 398 DVHVQLWASAILKDLYKILNDPVRENEALQMH 429
D + A L + Y L + ++A+
Sbjct: 302 DRIGEGRACWSLGNAYTALGNH---DQAMHFA 330
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/85 (18%), Positives = 32/85 (37%)
Query: 314 LTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIF 373
+ + +A Y G F+ Y +A Y L +A + + LG+
Sbjct: 38 VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97
Query: 374 LSLGNHRESMNMVTPAMQLASKIPD 398
LGN E++ + ++ ++ D
Sbjct: 98 KVLGNFDEAIVCCQRHLDISRELND 122
Score = 30.3 bits (69), Expect = 1.2
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
V + A + E L + A + LG+ LGN
Sbjct: 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 202
Query: 379 HRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMH 429
R+++ + +A + D + A + L + Y L + A + +
Sbjct: 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF---ETASEYY 250
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 37.9 bits (89), Expect = 0.002
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
+ + A+ G + + +A + L +A + LG+ ++ LG
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64
Query: 379 HRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRENEALQMH 429
+ + LA ++ D V+ + L + Y +L D +A+ H
Sbjct: 65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY---EKAIDYH 112
Score = 32.9 bits (76), Expect = 0.097
Identities = 16/80 (20%), Positives = 35/80 (43%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
++ A + Y G Y +A Y + L +A + LG+ + +LGN
Sbjct: 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144
Query: 379 HRESMNMVTPAMQLASKIPD 398
H ++M+ ++++ ++ D
Sbjct: 145 HDQAMHFAEKHLEISREVGD 164
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 39.2 bits (92), Expect = 0.002
Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 23/152 (15%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
NL + G+F + + + ++S AY G
Sbjct: 188 NLGNTH---YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG------- 237
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397
+ A Y ++TL +A + + S LG+ + L ++ ++++ + +A ++
Sbjct: 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297
Query: 398 DVHVQLWASAILKDLYKILNDPVRENEALQMH 429
D + A L + Y L + ++A+
Sbjct: 298 DRIGEGRACWSLGNAYTALGNH---DQAMHFA 326
Score = 38.8 bits (91), Expect = 0.003
Identities = 16/80 (20%), Positives = 30/80 (37%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
+A Y G F+ Y +A Y L +A + + LG+ LGN
Sbjct: 39 LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98
Query: 379 HRESMNMVTPAMQLASKIPD 398
E++ + ++ ++ D
Sbjct: 99 FDEAIVCCQRHLDISRELND 118
Score = 36.5 bits (85), Expect = 0.013
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 10/126 (7%)
Query: 304 ALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTS 363
+L+ + + +Y+ G + +A + L +A
Sbjct: 171 SLVTALGDRAAQGRAFGNLGNTHYLLG-------NFRDAVIAHEQRLLIAKEFGDKAAER 223
Query: 364 CSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVREN 423
+ LG+ ++ LG + + LA ++ D V+ + L + Y +L D
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY---E 280
Query: 424 EALQMH 429
+A+ H
Sbjct: 281 KAIDYH 286
Score = 35.3 bits (82), Expect = 0.038
Identities = 16/80 (20%), Positives = 35/80 (43%)
Query: 319 HSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGN 378
++ A + Y G Y +A Y + L +A + LG+ + +LGN
Sbjct: 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318
Query: 379 HRESMNMVTPAMQLASKIPD 398
H ++M+ ++++ ++ D
Sbjct: 319 HDQAMHFAEKHLEISREVGD 338
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 35.6 bits (83), Expect = 0.028
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 29/115 (25%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERI----NPETLTSHSHSLRAAAYYVQGLQS 333
NLA++ + +G + + + +P + ++ A+ Y QG
Sbjct: 158 NLALLC---QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN--LASCYLKQG--- 209
Query: 334 FFQARYNEAKRYLRETLKMANAEDL---NRLTSCSLVLLGHIFLSLGNHRESMNM 385
++ +A+ +E L A+ + + + G ++ +
Sbjct: 210 ----KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260
Score = 33.7 bits (78), Expect = 0.11
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 20/98 (20%)
Query: 311 PETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMAN----AEDLNRLTSCSL 366
P L + H+L Y QG RY A ++ L+ + + T L
Sbjct: 24 PARLRTL-HNL-VIQYASQG-------RYEVAVPLCKQALEDLEKTSGHDHPDVAT--ML 72
Query: 367 VLLGHIFLSLGNHRESMNMVTPAMQLASKI-----PDV 399
+L ++ ++++ N++ A+ + K P V
Sbjct: 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110
Score = 29.8 bits (68), Expect = 1.9
Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 24/77 (31%)
Query: 288 NLAIVYLRGKREGDFA--------ALLERI----NPETLTSHSHSLRAAAYYVQGLQSFF 335
+ + +G + +P T+ + A Y QG
Sbjct: 243 HAEERE---ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKN--LGALYRRQG----- 292
Query: 336 QARYNEAKRYLRETLKM 352
++ A+ ++
Sbjct: 293 --KFEAAETLEEAAMRS 307
Score = 29.8 bits (68), Expect = 1.9
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 32/116 (27%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERI----NPETLTSHSHSLRAAAYYVQGLQS 333
NLA++Y + G + + E++ +P+ ++L A QG
Sbjct: 116 NLAVLY---GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL-NNL-ALLCQNQG--- 167
Query: 334 FFQARYNEAKRYLRETLKMANA----EDLNRLTSCSLVLLGHIFLSLGNHRESMNM 385
+Y E + Y + L++ +D N + L +L G +++ +
Sbjct: 168 ----KYEEVEYYYQRALEIYQTKLGPDDPNVAK--TKNNLASCYLKQGKFKQAETL 217
Score = 29.4 bits (67), Expect = 2.2
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 26/79 (32%)
Query: 288 NLAIVYLRGKREGDFA---ALLERI-----------NPETLTSHSHSLRAAAYYVQGLQS 333
LA+VY + + + LL +P + ++L A Y +G
Sbjct: 74 ILALVY---RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL-NNL-AVLYGKRG--- 125
Query: 334 FFQARYNEAKRYLRETLKM 352
+Y EA+ + L++
Sbjct: 126 ----KYKEAEPLCKRALEI 140
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 35.1 bits (80), Expect = 0.040
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 283 TFANLNLAIVYL-----RGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQA 337
T+A A+V + E AAL I+ +T + + Y ++ + + +
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397
+ +E+ + + + DL + + VLLG ++ G +RE+ + A L P
Sbjct: 292 KTDESYQAINTGI------DLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR---P 341
Query: 398 DVHVQLWASAIL 409
+ W +
Sbjct: 342 GANTLYWIENGI 353
Score = 34.7 bits (79), Expect = 0.062
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 14 PPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKFEAASVLAELYE 73
P + + + D + + L S + +L ++YE
Sbjct: 271 PELNNLSIIYQIKA-VSALVKGKTDESYQAINTGIDLEMS--------WLNYVLLGKVYE 321
Query: 74 TQLLSNLSKPILRRAIEL--SQHSIYWHCRLIFQ 105
+ ++ + A L +++YW IFQ
Sbjct: 322 MKGMNREAADAYLTAFNLRPGANTLYWIENGIFQ 355
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 35.2 bits (81), Expect = 0.044
Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 19/119 (15%)
Query: 286 NLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRY 345
N+ LA YL+ ++ + + + + A +
Sbjct: 456 NILLANEYLQ-------SSY--ALFQYDPLLLNE--LGVVAFNKS-------DMQTAINH 497
Query: 346 LRETLKMA-NAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403
+ L + + + + + LGH + L + +++ + + L++ +VH +
Sbjct: 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
Score = 31.0 bits (70), Expect = 1.1
Identities = 39/317 (12%), Positives = 89/317 (28%), Gaps = 52/317 (16%)
Query: 87 RAIELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSR 146
+ ++++ + F LAQ++ DY A LL + + +L +
Sbjct: 109 KVLDITGNPND-----AFWLAQVYCCTGDYARAKCLL-----TKEDLYNRSSACRYLAAF 158
Query: 147 CMLLLIDKKVNDAVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKP 206
C++ L A+ LL + ++ + L +C+ GQV +
Sbjct: 159 CLVKL--YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR--GQVYTN-- 212
Query: 207 CLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTG 266
L ++ + ++ + F + HL ++ L +
Sbjct: 213 -LSNFDRAKECYKEA------LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY----- 260
Query: 267 TAGTEVERLSQERELWTFANLNLAI-VYLRGKREGDFAALLERINPETLTSHSHSLRAAA 325
S+E + + L + L IN +S +A
Sbjct: 261 ------STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314
Query: 326 YYVQGLQSFFQARYNEAKRYLRETLKMA--NAEDLNRLTSCSLVLLGHIFLSLGNHRESM 383
+V+ R+ + + L++ N + L G +
Sbjct: 315 LFVRS-------RFIDVLAITTKILEIDPYNLDVYP--------LHLASLHESGEKNKLY 359
Query: 384 NMVTPAMQLASKIPDVH 400
+ + +
Sbjct: 360 LISNDLVDRHPEKAVTW 376
Score = 30.6 bits (69), Expect = 1.1
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRES 382
A + G+ + +EA+RY ++ ++ + + H F G H ++
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSST------MDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 383 MN 384
++
Sbjct: 427 IS 428
Score = 28.7 bits (64), Expect = 5.5
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 16/151 (10%)
Query: 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLN----------RLTSCSLVLLGHI 372
+A Y+ + A L ET E +L + L G +
Sbjct: 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV 209
Query: 373 FLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLY------KILNDPVRENEAL 426
+ +L N + A+ + +K + QL ++ +L K+ + +A
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 427 QMHCNFSQMLLKDHFQSSERAEHNLINCIDG 457
+ + L K + R + ++ I+G
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSING 300
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 35.3 bits (81), Expect = 0.046
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 3 IQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKF 62
Q F+ + P + HL+ GN L K D A +H + IN K
Sbjct: 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG----VKINQKSREKE 409
Query: 63 EAASVLAELYETQLLSN 79
+ L ++ + +L N
Sbjct: 410 KMKDKLQKIAKMRLSKN 426
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 34.0 bits (77), Expect = 0.084
Identities = 13/144 (9%), Positives = 41/144 (28%), Gaps = 5/144 (3%)
Query: 276 SQERELWTFANLNLAIVYLRGKREGDFAALLER-INPETLTSHSHSLRAAAYYVQGLQSF 334
+ + +A +Y L E+ + + Y +
Sbjct: 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207
Query: 335 FQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESM-NMVTPAMQLA 393
+RY E+ + + ++++ + L G L + + A
Sbjct: 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267
Query: 394 SKIPDVHVQLWASAILKDLYKILN 417
+ + + A++ + ++ +
Sbjct: 268 DIL---EMHAYKEALVNKISRLEH 288
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 32.9 bits (76), Expect = 0.19
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 20/121 (16%)
Query: 287 LNLAIVYLRGKR----EGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEA 342
+ LA + E L P+ + F R + +
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWR-QEPD---------NTGVLLLLSSIHFQCRRLDRS 52
Query: 343 KRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQ 402
+ +K N L + + LG+++ G +E++ A++L D ++
Sbjct: 53 AHFSTLAIK------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 106
Query: 403 L 403
L
Sbjct: 107 L 107
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 33.2 bits (76), Expect = 0.19
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 29/145 (20%)
Query: 288 NLAIVYLR-GKREG---DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAK 343
LA+ + F ++ +NPE ++ H R Y++ Y AK
Sbjct: 281 FLALTLADKENSQEFFKFFQKAVD-LNPEYPPTYYH--RGQMYFILQ-------DYKNAK 330
Query: 344 RYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403
++ LN + L + G ES +P+V
Sbjct: 331 EDFQKAQS------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
Query: 404 WASAILKDLYKILNDPVRENEALQM 428
+ IL D + A++
Sbjct: 385 --AEILTDRGDF-------DTAIKQ 400
Score = 28.1 bits (63), Expect = 7.3
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMA-NAEDLNRLTSCSLVLLGHIFLSLGNHRE 381
A A G+ F + +A+ L+E++ + L N +E
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF--------LALTLADKENSQE 294
Query: 382 SMNMVTPAMQLASKIPDVHVQL 403
A+ L + P +
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHR 316
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 31.8 bits (71), Expect = 0.24
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 322 RAAAYYVQGLQSFFQARYNEAKRYLRETLKMAN------AEDLNRLTSCSLVLLGHIFLS 375
A + Y+EA R +++++ A D + L
Sbjct: 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69
Query: 376 LGNHRESMNMVTPAMQLASKIPDVH---VQLWASAI 408
L + E+++ A+ ++ +++ +LW SA+
Sbjct: 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 32.5 bits (74), Expect = 0.30
Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 22/124 (17%)
Query: 285 ANLNLAIVYLRGKREGDFAALLER---INPETLTSHSHSLRAAAYYVQGLQSFFQARYNE 341
A L LA L ++R ++P A G + Q R+ E
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPG---------HPEAVARLGRVRWTQQRHAE 75
Query: 342 AKRYLRETLKMA--NAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDV 399
A L++ A + LGH G + T A QL + P +
Sbjct: 76 AAVLLQQASDAAPEHPGIAL--------WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127
Query: 400 HVQL 403
QL
Sbjct: 128 TAQL 131
Score = 32.1 bits (73), Expect = 0.39
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 26/130 (20%)
Query: 286 NLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRY 345
+ ++ LR AA+ R P+ + + A A G +
Sbjct: 4 DGPRELLQLR-------AAV--RHRPQDF--VAWLMLADAELGMG-------DTTAGEMA 45
Query: 346 LRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWA 405
++ L L+ ++ LG + + H E+ ++ A A + P + + L
Sbjct: 46 VQRGLA------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL-- 97
Query: 406 SAILKDLYKI 415
L+D +
Sbjct: 98 GHALEDAGQA 107
Score = 31.7 bits (72), Expect = 0.59
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 15/117 (12%)
Query: 3 IQCLQAVFNFKPPPRVEARTHLQLGNILLTHTKNIDLARNHLEQAWHLSQSINAFDDVKF 62
+ L+A +P + L L + L + +++ L
Sbjct: 9 LLQLRAAVRHRPQ---DFVAWLMLADAEL-GMGDTTAGEMAVQRGLALHP-----GHP-- 57
Query: 63 EAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQIHAGEKDYELA 119
EA + L + TQ + +L++A + + L E A
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL----WLGHALEDAGQAEAA 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 31.3 bits (71), Expect = 0.30
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRES 382
Y + + R EA+ + R + ++ L I+ +++
Sbjct: 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI------YDFYNVDYIMGLAAIYQIKEQFQQA 89
Query: 383 MNMVTPAMQLASKIPDVHVQL 403
++ A L
Sbjct: 90 ADLYAVAFALGKNDYTPVFHT 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 32.1 bits (74), Expect = 0.33
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 29/115 (25%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERI----NPETLTSHSHSLRAAAYYVQGLQS 333
NLA++ + +G + +P + ++L A+ Y QG
Sbjct: 132 NLALLC---QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK-NNL-ASCYLKQG--- 183
Query: 334 FFQARYNEAKRYLRETLKMANAEDL---NRLTSCSLVLLGHIFLSLGNHRESMNM 385
+Y +A+ +E L A+ ++ N + S R+S
Sbjct: 184 ----KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234
Score = 31.7 bits (73), Expect = 0.48
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 311 PETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANA---EDLNRLTSCSLV 367
P+ T + L A Y Q +Y EA L + L + +D + + +L
Sbjct: 40 PDVATML-NIL-ALVYRDQN-------KYKEAAHLLNDALAIREKTLGKD-HPAVAATLN 89
Query: 368 LLGHIFLSLGNHRESMNMVTPAMQLASKI-----PDV 399
L ++ G ++E+ + A+++ K+ PDV
Sbjct: 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126
Score = 29.8 bits (68), Expect = 1.5
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 32/112 (28%)
Query: 288 NLAIVYLRGKREGDFA----------ALLERI----NPETLTSHSHSLRAAAYYVQGLQS 333
NLA++Y + G + + E++ +P+ ++ A QG
Sbjct: 90 NLAVLY---GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN--LALLCQNQG--- 141
Query: 334 FFQARYNEAKRYLRETLKMANA----EDLNRLTSCSLVLLGHIFLSLGNHRE 381
+ E + Y R L++ +D N + L +L G +++
Sbjct: 142 ----KAEEVEYYYRRALEIYATRLGPDDPNVAK--TKNNLASCYLKQGKYQD 187
Score = 29.0 bits (66), Expect = 2.8
Identities = 9/77 (11%), Positives = 17/77 (22%), Gaps = 24/77 (31%)
Query: 288 NLAIVYLRGKREGDFA--------ALLERI----NPETLTSHSHSLRAAAYYVQGLQSFF 335
+ + + + +P T+ SL A Y QG
Sbjct: 217 HAEERE---ESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL-RSL-GALYRRQG----- 266
Query: 336 QARYNEAKRYLRETLKM 352
+ A +
Sbjct: 267 --KLEAAHTLEDCASRN 281
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 30.9 bits (70), Expect = 0.36
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRES 382
Y G + ++++A++ + L+ + + LG SLG + ++
Sbjct: 18 LEQLYALGFNQYQAGKWDDAQKIFQALC------MLDHYDARYFLGLGACRQSLGLYEQA 71
Query: 383 MNMVTPAMQLASKIPDVHVQL 403
+ + + P
Sbjct: 72 LQSYSYGALMDINEPRFPFHA 92
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 31.5 bits (72), Expect = 0.50
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 288 NLAIVYLRGKREGDFAALLER---INPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKR 344
+ +V + + G +Y EA
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 345 YLRETLKMA--NAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQ 402
Y R+ L + NA + +G+I +GN +++ A+ L
Sbjct: 258 YHRQALVLIPQNASTYS--------AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309
Query: 403 L 403
L
Sbjct: 310 L 310
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.56
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 8/28 (28%)
Query: 205 KPCLKQLQQSILTIMQPTWPSDEVVSGP 232
K LK+LQ S L + D S P
Sbjct: 19 KQALKKLQAS-LKLYAD----D---SAP 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 31.3 bits (71), Expect = 0.71
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 16/118 (13%)
Query: 308 RINPETLTSHSHSLRAAAYYVQGLQSFFQA--RYNEAKRYLRETLKM--ANAEDLNRLTS 363
+ + + A L + + EA L + K+ + +
Sbjct: 400 ELENKLDGIYVG--IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG--- 454
Query: 364 CSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYK-ILNDPV 420
L + L + E++ + + LA + + Q A + + I +DPV
Sbjct: 455 -----LAQMKLQQEDIDEAITLFEESADLARTMEEKL-QAITFAEAAKVQQRIRSDPV 506
Score = 30.5 bits (69), Expect = 1.4
Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 308 RINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMA--NAEDLNRLTSCS 365
++PE + + A Y + ++++ + E + E N
Sbjct: 332 ELDPENIFPYIQ--LACLAYREN-------KFDDCETLFSEAKRKFPEAPEVPN------ 376
Query: 366 LVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKILNDPVRE-NE 424
I + +++ A++L +K+ ++V + A + K N V E
Sbjct: 377 --FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI-APLVGKATLLTRNPTVENFIE 433
Query: 425 ALQM 428
A +
Sbjct: 434 ATNL 437
Score = 30.1 bits (68), Expect = 1.6
Identities = 12/120 (10%), Positives = 38/120 (31%), Gaps = 20/120 (16%)
Query: 285 ANLNLAIVYLR-GKREG---DFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYN 340
+ + +A++ F L+ ++ + + H R ++ Y+
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKALK-LDSNNSSVYYH--RGQMNFILQ-------NYD 321
Query: 341 EAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVH 400
+A + + + L+ + L + + + + A + + P+V
Sbjct: 322 QAGKDFDKAKE------LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375
Score = 28.2 bits (63), Expect = 6.9
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 323 AAAYYVQGLQSFFQARYNEAKRYLRETLKMA-NAEDLNRLTSCSLVLLGHIFLSLGNHRE 381
A + G+ F + A +++ +++ + I + E
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY--------MALIMADRNDSTE 288
Query: 382 SMNMVTPAMQLASKIPDVH 400
N A++L S V+
Sbjct: 289 YYNYFDKALKLDSNNSSVY 307
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 29.9 bits (67), Expect = 1.0
Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 21/110 (19%)
Query: 300 GDFAA------LLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMA 353
G + +L I+ +TL Y + Y +A +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTL---------EQLYSLAFNQYQSGXYEDAHXVFQALC--- 48
Query: 354 NAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQL 403
L+ S + LG ++G + +++ + + P
Sbjct: 49 ---VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 30.1 bits (68), Expect = 1.3
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 285 ANLNLA-IVYLRGKREGDFAALLER---INPETLTSHSHSLRAAAYYVQGLQSFFQARYN 340
AN+ L YL ++E + + A Y GL F RY
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---------MQYARYRDGLSKLFTTRYE 174
Query: 341 EAKRYLRETLKMA-NAEDLNRL 361
+A+ L++ + + E L
Sbjct: 175 KARNSLQKVILRFPSTEAQKTL 196
Score = 28.2 bits (63), Expect = 4.6
Identities = 15/132 (11%), Positives = 40/132 (30%), Gaps = 22/132 (16%)
Query: 285 ANLNLAIVYLRGKREGDFAALLE------RINPE-------TLTSHSHSLRAAAYYVQGL 331
L + G + +N + T + + + L
Sbjct: 6 EMLQKVSAAIE---AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 332 QSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQ 391
Y++A + +E L+ +++ L + + G ++++ M +Q
Sbjct: 63 AYKKNRNYDKAYLFYKELLQK-APNNVD-----CLEACAEMQVCRGQEKDALRMYEKILQ 116
Query: 392 LASKIPDVHVQL 403
L + ++ L
Sbjct: 117 LEADNLAANIFL 128
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.5
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 23/90 (25%)
Query: 270 TEVERLSQERE---LWTFANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAY 326
+ +RL+QE E W RE + L+ ++ R A
Sbjct: 75 AQADRLTQEPESIRKW---------------RE-EQRKRLQELD-AASKVMEQEWREKA- 116
Query: 327 YVQGLQSFFQARYNEAKRYLRETLKMANAE 356
+ L+ + R +E + ++A+
Sbjct: 117 -KKDLEEWN-QRQSEQVEKNKINNRIADKA 144
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 29.1 bits (65), Expect = 2.5
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 315 TSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFL 374
+S + R Y G ++ F + + +A+ YL + + L+ L + +
Sbjct: 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMI-LIYLLPVKM 64
Query: 375 SLGNH 379
LG+
Sbjct: 65 LLGHM 69
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 28.8 bits (65), Expect = 3.0
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 285 ANLNLAIVYLRGKREGDFAAL-LERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAK 343
+ + +V RG GD L ++ E ++ Y +G +AK
Sbjct: 8 HHHSSGLVP-RGSHMGDQNPLKTDKGRDEARDAYIQ--LGLGYLQRG-------NTEQAK 57
Query: 344 RYLRETLKMA--NAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVH 400
LR+ L++ +A+ L +F + + + A+ S+ V
Sbjct: 58 VPLRKALEIDPSSADAHA--------ALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108
Score = 28.0 bits (63), Expect = 5.7
Identities = 14/117 (11%), Positives = 29/117 (24%), Gaps = 26/117 (22%)
Query: 286 NLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRY 345
A L A + + PE R+ + GL S + +AK Y
Sbjct: 120 RYEEAYQRLL-------EASQDTLYPE---------RSRVFENLGLVSLQMKKPAQAKEY 163
Query: 346 LRETLKM--ANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVH 400
++L++ + + + + Q +
Sbjct: 164 FEKSLRLNRNQPSVALE--------MADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 27.8 bits (62), Expect = 3.1
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 10/85 (11%)
Query: 318 SHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMA--NAEDLNRLTSCSLVLLGHIFLS 375
A Y G Y +A+ L +K + V + +
Sbjct: 22 QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA--------LRVFYAMVLYN 73
Query: 376 LGNHRESMNMVTPAMQLASKIPDVH 400
LG + + + ++ + S +
Sbjct: 74 LGRYEQGVELLLKIIAETSDDETIQ 98
Score = 26.6 bits (59), Expect = 9.1
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 338 RYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIP 397
+A Y + + + LG F +LG +R++ ++ ++
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAE---CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 398 DVHVQL 403
+ V
Sbjct: 62 ALRVFY 67
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 28.4 bits (64), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 159 AVQLLTQAGYQVENWTGSQYQKEYLK 184
AV +L + GY V TG++ +YLK
Sbjct: 167 AVSMLNKRGYDVVASTGNREAADYLK 192
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.70A {Escherichia coli} PDB:
2dbi_A 2csg_A*
Length = 461
Score = 28.2 bits (62), Expect = 7.0
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 95 SIYWHCRLIFQLAQIHAGEKDYEL 118
S++WHC +I +A + + +
Sbjct: 376 SVWWHCDVIHSVAPVENQQGWGNV 399
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 28.1 bits (63), Expect = 7.1
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 159 AVQLLTQAGYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQL 211
AV LL + GYQV +G + YLK L + +P KQL
Sbjct: 163 AVALLHKLGYQVAAVSGRESTHGYLKSL----GANRILSRDEFAESRPLEKQL 211
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein,
barbed END regulation, carmil family conformational
change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A*
3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Length = 286
Score = 27.7 bits (61), Expect = 7.8
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 9 VFNFKPPP-RVEARTHLQL-----GNILLTHTKNIDL---ARNHLEQAWHLSQSINAFDD 59
F PP +V A +Q+ GN+ L K+I + ++ A + I ++
Sbjct: 178 KFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAEN 237
Query: 60 VKFEAASVLAELYETQLLSNLSKPILRRAIELSQHSIYWHCRLIFQLAQ 108
+++ A ++E Y+T +S+ + LRR + +++ I W+ L +++ +
Sbjct: 238 -EYQTA--ISENYQT--MSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 27.8 bits (62), Expect = 8.6
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 220 QPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVERLSQER 279
P + + + P + E YL V H + + T V +S +
Sbjct: 64 MPDMNAISMDTSPAFTFNEEHISGET--YAEYLQVVANH---YELNIFENTVVTNISADD 118
Query: 280 ELWT 283
+T
Sbjct: 119 AYYT 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.404
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,993,787
Number of extensions: 412319
Number of successful extensions: 1301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1237
Number of HSP's successfully gapped: 117
Length of query: 466
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 369
Effective length of database: 3,993,456
Effective search space: 1473585264
Effective search space used: 1473585264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.8 bits)