RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9584
(466 letters)
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 59.5 bits (142), Expect = 2e-10
Identities = 37/383 (9%), Positives = 106/383 (27%), Gaps = 27/383 (7%)
Query: 58 DDVKFEAASVLAELYETQLLSNLSKPILRRAIEL-SQHSIYWHCRLIFQLAQIHAGEKDY 116
D + E ++ A++ + ++ + + A+E Y L ++ + +
Sbjct: 8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 67
Query: 117 ELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLLTQAGYQVENWTGS 176
+ +L+ A + + + L+ + +L + A + +A +
Sbjct: 68 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 127
Query: 177 QYQKEYLKVFFLVLQVCHYLMAGQVKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGD 236
Q V ++ + + + + + +
Sbjct: 128 QLPMHEFLVRIRA---QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 184
Query: 237 MFIWMPKEHLYVVVYLVTVIGHLKFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRG 296
+ + + AN I +
Sbjct: 185 RGDLDNARSQLN------------------RLENLLGNGKYHSDWISNANKVRVIYWQMT 226
Query: 297 KREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAE 356
+ A L ++ + + A+ L E + A +
Sbjct: 227 GDKAAAANWLRHT--AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 284
Query: 357 DLNRLTSCSLVLLGHIFLSLGNHRESMNMVTPAMQLASKIPDVHVQLWASAILKDLYKIL 416
L + +L+LL ++ G ++ ++ A++LA++ + + + + L
Sbjct: 285 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 344
Query: 417 NDPVRENEALQMHCNFSQMLLKD 439
E Q +Q +L++
Sbjct: 345 IQLNTLPELEQHR---AQRILRE 364
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 30.4 bits (67), Expect = 0.53
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 329 QGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSLGNHRESMNMVTP 388
+ + + A+R+ + + + L+LL I S + T
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
Query: 389 AMQLASKIPDVHVQL 403
A++ + + + L
Sbjct: 59 AIKQNPLLAEAYSNL 73
Score = 30.0 bits (66), Expect = 0.68
Identities = 41/362 (11%), Positives = 87/362 (24%), Gaps = 49/362 (13%)
Query: 104 FQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTRVLFLLSRCMLLLIDKKVNDAVQLL 163
+LA D+E A T VL LLS ++++ +
Sbjct: 3 MELAHREYQAGDFEAAERHC----MQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFS 56
Query: 164 TQA-----------------------GYQVENWTGSQYQKEYLKVFFLVLQVCHYLMAGQ 200
T A + + + + + + AG
Sbjct: 57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116
Query: 201 VKSVKPCLKQLQQSILTIMQPTWPSDEVVSGPNVGDMFIWMPKEHLYVVVYLVTVIGHL- 259
++ Q + ++ + + + +L
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 260 ---KFFGVTGTAGTEVERLSQERELWTFANLNLAIVYLRGKREGDFAALLERINPETLTS 316
G A E+ + A +NL V + A R
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL------ 230
Query: 317 HSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKMANAEDLNRLTSCSLVLLGHIFLSL 376
A + + Q + A R ++ L + L +
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE------LQPHFPDAYCNLANALKEK 284
Query: 377 GNHRESMNMVTPAMQLASKIPDVHVQLWASAI-LKDLYKILNDPVRENEALQMHCNFSQM 435
G+ E+ + A++L D L ++ + + +AL++ F+
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL---YRKALEVFPEFAAA 341
Query: 436 LL 437
Sbjct: 342 HS 343
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 28.3 bits (63), Expect = 0.57
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 285 ANLNLAIVYLRGKREGDFAALLERINPETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKR 344
L + LR + + L+ A Y+ +Q+ Q + +
Sbjct: 19 NELKRSFFALR--------DQIPELENNEKAPKVVILKKATAYILSVQAEEQ-KLISEED 69
Query: 345 YLRETLKMANAEDLNRLTSC 364
LR+ + + L +L C
Sbjct: 70 LLRKRREQLKHK-LEQLGGC 88
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 28.0 bits (62), Expect = 2.9
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 96 IYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYTR 139
++WHC +I +A + + +++ + N Y R
Sbjct: 335 VWWHCDVIHSVAPVENQQGW----GNVMYIPAAPMCEKNLAYAR 374
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 26.6 bits (57), Expect = 7.5
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 38 DLARNHLEQAWHLSQSINAFDDVKFEAASVLAE 70
+ +L +AW +++ N + + L++
Sbjct: 59 AVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQ 91
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 25.5 bits (56), Expect = 8.5
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 312 ETLTSHSHSLRAAAYYVQGLQSFFQARYNEAKRYLRETLKM 352
+ + S R Y + + Y+ AKRY+ +
Sbjct: 62 TDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102
>d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori
[TaxId: 105351]}
Length = 353
Score = 26.3 bits (57), Expect = 9.1
Identities = 9/49 (18%), Positives = 14/49 (28%)
Query: 90 ELSQHSIYWHCRLIFQLAQIHAGEKDYELASSLLGVGVDYANISNAQYT 138
+ W C + +L + + S L G S QY
Sbjct: 213 PYNAQGGVWECPGLVKLPLDSGNSTKWVITSGLNPGGPPGTVGSGTQYF 261
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.404
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,688,247
Number of extensions: 76133
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 16
Length of query: 466
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 377
Effective length of database: 1,185,626
Effective search space: 446981002
Effective search space used: 446981002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)