BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9585
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLF--NFQTDVEGPVLEN- 86
LP ELLL IFS L + L + + V K W LA D S W +DL N DV G +L
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQG 71
Query: 87 -ISRRCG-GFLRQ-----ISLRGCQSM-TDNSL-------NILAQYCNNVEDINLNLCKK 131
I+ RC F+ Q S Q M NS+ IL+Q C+ +++++L +
Sbjct: 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ-CSKLQNLSLE-GLR 129
Query: 132 LTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186
L+D L+K+ + L RL+L+ CS ++ +L+ L C L +N+SWC + TE
Sbjct: 130 LSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 35/163 (21%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQ------TDVEGPV 83
LP ELLL IFS L + L + + V K W LA D S W +D F Q + +E
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVST 71
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
L I +C L+ +SL G + ++D +N LA+ N
Sbjct: 72 LHGILSQCSK-LQNLSLEGLR-LSDPIVNTLAKNSN------------------------ 105
Query: 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186
L RL+L+ CS ++ +L+ L C L +N+SWC + TE
Sbjct: 106 ---LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 145
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
LPKEL L + S+L+ L + AQ + W ILA D W
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLW 59
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 33.5 bits (75), Expect = 0.072, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 89 RRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQ 148
RR +LRQ +TD L+ + QY NV + L + +D + S+ C LQ
Sbjct: 439 RRFAFYLRQ------GGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQ 491
Query: 149 RLDLASCSFITDQSLKALADGCRNLTHINISW 180
+L++ C F S +A+A L + W
Sbjct: 492 KLEMRGCCF----SERAIAAAVTKLPSLRYLW 519
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID 71
LP ELLL IFS L + L + + V K W LA D S W +D
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
LP ELLL IFS L + L + + V K W LA D S W
Sbjct: 4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 38 IFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTD 78
I SYLD SLC V K W + DG W ++ +TD
Sbjct: 26 ILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTD 66
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 109 NSLNILAQYCNNVEDINLNLCKKLTDATSLA-LSKHCAKLQRL 150
N N++ Y + +ED LN+ +L DA L+ + KH K +RL
Sbjct: 90 NHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRL 132
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 70 IDLFNFQTDVE--GPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLN 127
+D NF VE G EN +R +R++ RGC + N + Y E IN++
Sbjct: 125 VDYINFLKGVEAVGSYAEN--QRITA-VRRVYQRGCVNPMINIEQLWRDYNKYEEGINIH 181
Query: 128 LCKKLTDATS 137
L KK+ + S
Sbjct: 182 LAKKMIEDRS 191
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWN-ILALDGSNWSRI 70
LP E+ L+IF+YL + VS+ WN I+ S W ++
Sbjct: 18 LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWN-ILALDGSNWSRI 70
LP E+ L+IF+YL + VS+ WN I+ S W ++
Sbjct: 18 LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59
>pdb|4EPA|A Chain A, The Crystal Structure Of The Ferric Yersiniabactin Uptake
Receptor Fyua From Yersinia Pestis
Length = 655
Score = 27.7 bits (60), Expect = 3.7, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 86 NISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLAL 140
NI ISLRG S D + Y + V ++ N + LTD S+ L
Sbjct: 60 NIENSGNXLFSTISLRGVSSAQDFYNPAVTLYVDGVPQLSTNTIQALTDVQSVEL 114
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 111 LNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCS 156
L +LA+ C N++ +NL+ K+ D +++ K L+ LDL +C
Sbjct: 85 LEVLAEKCPNLKHLNLS-GNKIKDLSTIEPLKKLENLKSLDLFNCE 129
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 132 LTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINI 178
+TD ++K + L L+SC + L A+A CRNL +++
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,182,776
Number of Sequences: 62578
Number of extensions: 180843
Number of successful extensions: 286
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 21
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)