Query psy9585
Match_columns 189
No_of_seqs 133 out of 1793
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 23:26:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341|consensus 99.9 8.4E-28 1.8E-32 184.9 6.1 164 25-188 70-233 (483)
2 KOG2120|consensus 99.9 3E-23 6.6E-28 154.3 8.5 154 27-185 98-274 (419)
3 KOG4341|consensus 99.5 6.8E-15 1.5E-19 114.2 4.0 111 78-189 280-390 (483)
4 KOG2120|consensus 99.4 3E-13 6.6E-18 101.4 4.5 128 56-187 201-329 (419)
5 PF12937 F-box-like: F-box-lik 99.3 8.7E-13 1.9E-17 73.5 2.6 46 27-72 1-46 (47)
6 KOG1947|consensus 99.3 4.4E-11 9.6E-16 97.6 11.2 154 28-182 173-332 (482)
7 KOG1947|consensus 99.2 3.8E-11 8.2E-16 98.0 7.2 110 78-188 200-312 (482)
8 KOG3864|consensus 98.9 1.1E-09 2.5E-14 77.9 2.9 89 95-186 103-191 (221)
9 smart00256 FBOX A Receptor for 98.8 8E-09 1.7E-13 55.5 3.8 40 30-69 1-40 (41)
10 PF00646 F-box: F-box domain; 98.8 1.3E-09 2.7E-14 60.9 0.3 42 26-67 2-43 (48)
11 cd00116 LRR_RI Leucine-rich re 98.8 1.5E-07 3.3E-12 73.0 11.3 87 95-185 167-263 (319)
12 cd00116 LRR_RI Leucine-rich re 98.6 1.9E-06 4.1E-11 66.8 12.2 118 65-188 165-294 (319)
13 KOG3864|consensus 98.3 8.4E-07 1.8E-11 63.5 5.0 82 94-176 126-209 (221)
14 KOG1909|consensus 98.1 2.3E-05 5E-10 60.6 8.9 75 111-188 177-257 (382)
15 KOG3665|consensus 98.1 6.9E-06 1.5E-10 70.2 6.3 65 65-133 122-186 (699)
16 KOG3207|consensus 98.0 4.3E-06 9.3E-11 66.3 3.4 110 68-182 124-233 (505)
17 KOG1909|consensus 98.0 5.1E-05 1.1E-09 58.7 7.9 84 95-181 215-308 (382)
18 smart00367 LRR_CC Leucine-rich 97.9 1.4E-05 3E-10 38.2 3.2 25 144-168 1-25 (26)
19 KOG3665|consensus 97.7 3.4E-05 7.3E-10 66.0 3.3 67 91-159 120-186 (699)
20 smart00367 LRR_CC Leucine-rich 97.6 6.8E-05 1.5E-09 35.8 2.9 25 118-142 1-25 (26)
21 KOG2997|consensus 97.4 0.00014 3E-09 55.6 3.3 49 24-72 104-157 (366)
22 KOG0281|consensus 97.4 9.6E-05 2.1E-09 57.1 2.4 48 24-71 72-123 (499)
23 PF14580 LRR_9: Leucine-rich r 97.1 0.00014 2.9E-09 51.8 0.3 81 95-180 66-149 (175)
24 PF14580 LRR_9: Leucine-rich r 97.1 0.00033 7.2E-09 49.9 2.1 107 66-186 20-127 (175)
25 PF12799 LRR_4: Leucine Rich r 97.1 0.00059 1.3E-08 37.0 2.6 37 145-185 1-37 (44)
26 KOG3207|consensus 97.1 0.00032 6.9E-09 56.0 2.0 86 94-185 122-210 (505)
27 COG5238 RNA1 Ran GTPase-activa 96.8 0.023 5.1E-07 43.2 9.9 72 114-188 180-258 (388)
28 PF13855 LRR_8: Leucine rich r 96.8 3E-05 6.6E-10 45.2 -4.3 60 119-182 1-60 (61)
29 PLN03210 Resistant to P. syrin 96.7 0.0017 3.7E-08 59.2 4.1 41 143-185 867-907 (1153)
30 PLN03215 ascorbic acid mannose 96.7 0.0016 3.5E-08 51.6 3.3 37 26-62 3-40 (373)
31 PLN00113 leucine-rich repeat r 96.7 0.0025 5.4E-08 57.0 4.9 11 144-154 163-173 (968)
32 PLN03210 Resistant to P. syrin 96.5 0.0025 5.3E-08 58.2 3.6 62 117-183 655-716 (1153)
33 KOG2739|consensus 96.4 0.00082 1.8E-08 50.2 -0.0 85 94-181 66-153 (260)
34 PF13516 LRR_6: Leucine Rich r 96.4 0.0028 6E-08 29.4 1.8 22 145-167 2-23 (24)
35 KOG0618|consensus 96.4 0.0028 6E-08 55.2 2.9 83 93-183 383-488 (1081)
36 KOG2123|consensus 96.3 0.0015 3.3E-08 49.6 1.1 60 117-177 61-123 (388)
37 PLN00113 leucine-rich repeat r 96.1 0.0069 1.5E-07 54.3 3.9 36 144-181 211-246 (968)
38 PLN03150 hypothetical protein; 96.0 0.0087 1.9E-07 51.2 4.3 36 117-154 464-499 (623)
39 KOG2982|consensus 95.8 0.0075 1.6E-07 46.4 2.6 96 81-181 60-156 (418)
40 PF12799 LRR_4: Leucine Rich r 95.8 0.0089 1.9E-07 32.3 2.2 37 119-159 1-37 (44)
41 KOG2739|consensus 95.6 0.0065 1.4E-07 45.5 1.7 82 95-182 45-127 (260)
42 KOG2982|consensus 95.6 0.011 2.4E-07 45.5 2.8 85 95-181 47-131 (418)
43 PF13516 LRR_6: Leucine Rich r 95.5 0.014 3E-07 26.9 2.1 23 118-141 1-23 (24)
44 KOG2123|consensus 94.7 0.025 5.4E-07 43.2 2.4 86 94-188 20-105 (388)
45 PF13855 LRR_8: Leucine rich r 94.6 0.0014 3.1E-08 38.0 -3.6 59 94-156 2-60 (61)
46 PLN03150 hypothetical protein; 94.5 0.054 1.2E-06 46.4 4.4 82 95-182 420-501 (623)
47 KOG4194|consensus 94.3 0.018 3.9E-07 48.3 1.0 85 94-186 103-187 (873)
48 smart00368 LRR_RI Leucine rich 94.3 0.087 1.9E-06 25.3 3.1 24 145-169 2-25 (28)
49 KOG3763|consensus 94.2 0.097 2.1E-06 43.5 4.9 90 85-177 211-307 (585)
50 KOG4194|consensus 94.2 0.036 7.8E-07 46.6 2.4 61 117-181 363-426 (873)
51 COG5238 RNA1 Ran GTPase-activa 93.9 0.49 1.1E-05 36.4 7.8 42 145-188 185-230 (388)
52 PF13013 F-box-like_2: F-box-l 93.5 0.12 2.5E-06 33.8 3.5 30 26-55 21-50 (109)
53 KOG1859|consensus 93.5 0.045 9.7E-07 47.2 1.9 34 144-181 186-219 (1096)
54 KOG0472|consensus 93.5 0.025 5.4E-07 45.4 0.4 37 144-183 504-540 (565)
55 PF13504 LRR_7: Leucine rich r 93.1 0.076 1.7E-06 22.3 1.5 12 171-182 1-12 (17)
56 KOG1644|consensus 91.5 0.16 3.4E-06 37.1 2.3 83 94-181 65-150 (233)
57 KOG0444|consensus 91.2 0.018 3.9E-07 48.8 -3.0 10 94-103 246-255 (1255)
58 PF07723 LRR_2: Leucine Rich R 91.2 0.16 3.4E-06 24.0 1.4 26 146-171 1-26 (26)
59 KOG0444|consensus 91.0 0.079 1.7E-06 45.2 0.5 33 94-128 174-206 (1255)
60 KOG0274|consensus 91.0 0.097 2.1E-06 44.0 1.0 46 22-67 103-148 (537)
61 PF09372 PRANC: PRANC domain; 90.9 0.23 5E-06 31.7 2.5 26 25-50 70-95 (97)
62 KOG1644|consensus 87.7 0.2 4.3E-06 36.6 0.4 36 144-181 87-123 (233)
63 PRK15386 type III secretion pr 86.4 0.51 1.1E-05 38.3 2.1 72 90-180 50-121 (426)
64 KOG1259|consensus 85.2 1 2.2E-05 35.2 3.1 33 118-154 306-338 (490)
65 KOG0618|consensus 85.0 0.12 2.5E-06 45.7 -2.2 56 95-158 361-419 (1081)
66 PRK15387 E3 ubiquitin-protein 84.9 1 2.3E-05 39.7 3.4 10 145-154 302-311 (788)
67 PF00560 LRR_1: Leucine Rich R 84.7 0.46 1E-05 21.2 0.7 13 172-185 1-13 (22)
68 KOG3926|consensus 84.4 0.52 1.1E-05 35.8 1.2 54 18-71 193-247 (332)
69 KOG4237|consensus 83.3 0.93 2E-05 36.6 2.2 64 117-185 272-335 (498)
70 KOG1259|consensus 83.2 0.51 1.1E-05 36.8 0.8 59 117-182 282-340 (490)
71 KOG4658|consensus 82.6 1.2 2.6E-05 40.0 2.9 38 115-154 567-604 (889)
72 KOG4308|consensus 82.3 0.41 8.9E-06 39.8 -0.0 12 170-181 289-300 (478)
73 KOG4579|consensus 81.2 0.79 1.7E-05 31.6 1.0 83 69-159 31-113 (177)
74 KOG3735|consensus 80.8 4.8 0.0001 31.7 5.3 87 90-178 195-290 (353)
75 KOG4658|consensus 80.0 1.3 2.9E-05 39.7 2.3 82 93-181 571-652 (889)
76 PRK15386 type III secretion pr 79.2 3.2 6.9E-05 33.9 4.0 89 66-180 53-141 (426)
77 KOG3735|consensus 79.0 4.9 0.00011 31.7 4.8 80 107-188 186-271 (353)
78 KOG1859|consensus 76.5 0.93 2E-05 39.6 0.3 12 170-181 253-264 (1096)
79 KOG4579|consensus 74.2 1.3 2.7E-05 30.7 0.4 54 95-154 79-132 (177)
80 PRK15387 E3 ubiquitin-protein 70.8 3.7 8.1E-05 36.4 2.6 34 145-185 282-315 (788)
81 KOG4308|consensus 70.7 2.1 4.5E-05 35.7 1.0 67 119-188 204-278 (478)
82 PHA02989 ankyrin repeat protei 70.0 5.3 0.00011 33.3 3.3 29 24-52 456-484 (494)
83 KOG3763|consensus 70.0 7 0.00015 33.0 3.9 76 109-186 208-285 (585)
84 KOG0617|consensus 61.1 1 2.2E-05 32.3 -2.2 18 143-161 100-117 (264)
85 PRK15370 E3 ubiquitin-protein 59.7 13 0.00029 32.9 3.9 32 145-181 262-293 (754)
86 KOG0531|consensus 59.5 3.7 8E-05 33.4 0.5 78 94-182 96-173 (414)
87 smart00369 LRR_TYP Leucine-ric 55.6 12 0.00026 17.0 1.7 11 171-181 2-12 (26)
88 smart00370 LRR Leucine-rich re 55.6 12 0.00026 17.0 1.7 11 171-181 2-12 (26)
89 KOG4237|consensus 50.9 5.3 0.00011 32.5 0.1 75 81-161 55-131 (498)
90 KOG0531|consensus 49.0 4.3 9.4E-05 33.0 -0.7 82 90-182 116-197 (414)
91 PF07735 FBA_2: F-box associat 46.1 58 0.0013 18.8 6.2 8 170-177 61-68 (70)
92 KOG0472|consensus 45.1 7.2 0.00016 31.9 0.0 12 143-154 250-261 (565)
93 PF03382 DUF285: Mycoplasma pr 45.1 13 0.00029 24.5 1.3 40 111-154 53-94 (120)
94 PF03448 MgtE_N: MgtE intracel 41.6 22 0.00047 22.3 1.9 35 14-48 33-67 (102)
95 COG4886 Leucine-rich repeat (L 41.2 23 0.00051 28.3 2.4 11 144-154 162-172 (394)
96 smart00446 LRRcap occurring C- 38.2 26 0.00057 16.5 1.3 15 166-180 8-22 (26)
97 smart00365 LRR_SD22 Leucine-ri 36.0 40 0.00086 15.7 1.8 10 145-154 2-11 (26)
98 smart00364 LRR_BAC Leucine-ric 31.1 33 0.00071 16.1 1.1 11 171-181 2-12 (26)
99 KOG2502|consensus 29.7 37 0.0008 27.0 1.7 37 25-61 43-87 (355)
100 KOG4408|consensus 29.0 13 0.00028 29.4 -0.8 44 27-70 8-51 (386)
101 PF08387 FBD: FBD; InterPro: 26.2 50 0.0011 18.0 1.5 33 146-178 15-49 (51)
102 KOG1665|consensus 22.9 27 0.00059 26.1 -0.1 21 111-131 188-208 (302)
103 PF03474 DMA: DMRTA motif; In 22.4 76 0.0017 16.5 1.6 17 31-47 4-20 (39)
104 PF08004 DUF1699: Protein of u 21.2 2.1E+02 0.0045 19.3 3.8 36 117-154 15-50 (131)
No 1
>KOG4341|consensus
Probab=99.94 E-value=8.4e-28 Score=184.87 Aligned_cols=164 Identities=55% Similarity=1.006 Sum_probs=157.9
Q ss_pred hhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCC
Q psy9585 25 LINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQ 104 (189)
Q Consensus 25 ~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~ 104 (189)
..--.||.|++.+||++|+.+.+.+++++|+.|...+.|...|.++|+..+..+++..++..+.++|+..|++|.++||.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r 149 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR 149 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc
Confidence 33457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCc
Q psy9585 105 SMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINI 184 (189)
Q Consensus 105 ~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~l 184 (189)
.+.+..+..+...||+++.|.+.+|.++|+..+..+.+.|++|++|+|..|..+|+..++.++++||+|++|+++||+.+
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9585 185 TENG 188 (189)
Q Consensus 185 t~~~ 188 (189)
+++|
T Consensus 230 ~~~g 233 (483)
T KOG4341|consen 230 SGNG 233 (483)
T ss_pred hcCc
Confidence 8865
No 2
>KOG2120|consensus
Probab=99.89 E-value=3e-23 Score=154.29 Aligned_cols=154 Identities=31% Similarity=0.510 Sum_probs=133.8
Q ss_pred cCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHH----------------
Q psy9585 27 NKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRR---------------- 90 (189)
Q Consensus 27 ~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~---------------- 90 (189)
|+.||||++..||+.|+.++++.++.||++|+++..+..+|..+|+.+- .+....+..+.++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r--~i~p~~l~~l~~rgV~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGR--NIHPDVLGRLLSRGVIVFRLARSFMDQPR 175 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCC--ccChhHHHHHHhCCeEEEEcchhhhcCch
Confidence 9999999999999999999999999999999999999999999998643 4444444444332
Q ss_pred -------cCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHH
Q psy9585 91 -------CGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSL 163 (189)
Q Consensus 91 -------~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l 163 (189)
+...|+.|++++ ..++-..+.-+...|.+|+.|++.+ ..++|.....|++ ..+|+.|+|++|..+|..++
T Consensus 176 lae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred hhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHH
Confidence 112488999998 6889999999999999999999999 6899999999887 68999999999999999999
Q ss_pred HHHHhcCCCCCeeecccCcCcC
Q psy9585 164 KALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 164 ~~l~~~~~~L~~L~l~~c~~lt 185 (189)
..+..+|..|..|+++||.-.+
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccc
Confidence 9999999999999999995443
No 3
>KOG4341|consensus
Probab=99.52 E-value=6.8e-15 Score=114.19 Aligned_cols=111 Identities=32% Similarity=0.601 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCC
Q psy9585 78 DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSF 157 (189)
Q Consensus 78 ~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~ 157 (189)
.++|..+..+...|.. |+.|..++|+.++|..+..++.+|++|+.|.+.+|.++++.++..+..+++.|+.+++.+|..
T Consensus 280 ~lTD~~~~~i~~~c~~-lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHA-LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred cccchHHHHHhhhhhH-hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 3556666666666665 888888888888888889999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHhcCCCCCeeecccCcCcCCCCC
Q psy9585 158 ITDQSLKALADGCRNLTHINISWCINITENGK 189 (189)
Q Consensus 158 i~~~~l~~l~~~~~~L~~L~l~~c~~lt~~~~ 189 (189)
++|..+..++.+||.|++|.+++|..+||+|+
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 99888999999999999999999999999874
No 4
>KOG2120|consensus
Probab=99.39 E-value=3e-13 Score=101.38 Aligned_cols=128 Identities=21% Similarity=0.464 Sum_probs=101.3
Q ss_pred HHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHH
Q psy9585 56 AWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDA 135 (189)
Q Consensus 56 ~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~ 135 (189)
....+....+.++.+.+.+. .++|.++..++.+- +|+.|++++|..++..+++.+..+|..|..|+|++|...++.
T Consensus 201 tl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~--~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 201 TLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNS--NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK 276 (419)
T ss_pred HHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccc--cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh
Confidence 33444333455666666654 77788888888765 399999999999999999999999999999999999766665
Q ss_pred HHHHHHHcCCCCCEEecCCCC-CCCHHHHHHHHhcCCCCCeeecccCcCcCCC
Q psy9585 136 TSLALSKHCAKLQRLDLASCS-FITDQSLKALADGCRNLTHINISWCINITEN 187 (189)
Q Consensus 136 ~~~~l~~~~~~L~~L~L~~c~-~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~~ 187 (189)
.-..+..-.++|..|+|+||. ++.+..+..+.+.||+|.+|++++|..++++
T Consensus 277 Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 277 VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 444444456899999999985 4677789999999999999999999888874
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.32 E-value=8.7e-13 Score=73.48 Aligned_cols=46 Identities=46% Similarity=0.755 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeec
Q psy9585 27 NKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL 72 (189)
Q Consensus 27 ~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l 72 (189)
|..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 5789999999999999999999999999999999988788988754
No 6
>KOG1947|consensus
Probab=99.28 E-value=4.4e-11 Score=97.59 Aligned_cols=154 Identities=31% Similarity=0.524 Sum_probs=115.2
Q ss_pred CCCCHHHHHHHHhcCCh---hhhHHHhhhhHH-HHHhhhCCCCcceeeccCC--CCCCCHHHHHHHHHHcCCCccEEeec
Q psy9585 28 KKLPKELLLRIFSYLDV---TSLCRCAQVSKA-WNILALDGSNWSRIDLFNF--QTDVEGPVLENISRRCGGFLRQISLR 101 (189)
Q Consensus 28 ~~LP~~il~~I~~~L~~---~~~~~~~~v~~~-w~~~~~~~~~~~~~~l~~~--~~~~~~~~l~~l~~~~~~~L~~L~l~ 101 (189)
......++..+....+. ..+..+..+... +..+......++.+++... ...........++..|. +++.|++.
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~ 251 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-KLKSLDLS 251 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-CcCccchh
Confidence 34455555555554333 222334344433 3445555567778887642 12233444555778885 49999999
Q ss_pred CCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 102 GCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
++..++|.++..++..|++|+.|.+.+|..++++++..+...|++|++|+|++|..++|.++..++.+||+|+.|.+..+
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 98889999999999999999999999998899999999999999999999999999999999999999999888776655
Q ss_pred c
Q psy9585 182 I 182 (189)
Q Consensus 182 ~ 182 (189)
.
T Consensus 332 ~ 332 (482)
T KOG1947|consen 332 N 332 (482)
T ss_pred C
Confidence 3
No 7
>KOG1947|consensus
Probab=99.20 E-value=3.8e-11 Score=97.97 Aligned_cols=110 Identities=29% Similarity=0.625 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHcCCCccEEeecC-CCCCCHH--HHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 78 DVEGPVLENISRRCGGFLRQISLRG-CQSMTDN--SLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 78 ~~~~~~l~~l~~~~~~~L~~L~l~~-~~~~~~~--~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
.+.+..+..++..++. |++|.+.+ +...... ....+...|++|+.|++++|..+++.++..++..|++|++|.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~ 278 (482)
T KOG1947|consen 200 KITDDSLDALALKCPN-LEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSN 278 (482)
T ss_pred cCChhhHHHHHhhCch-hheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCC
Confidence 4445557777778776 99999887 3333322 234467788999999999988899999999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCeeecccCcCcCCCC
Q psy9585 155 CSFITDQSLKALADGCRNLTHINISWCINITENG 188 (189)
Q Consensus 155 c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~~~ 188 (189)
|..++++++..++..||+|++|++++|..+++.|
T Consensus 279 c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~ 312 (482)
T KOG1947|consen 279 CSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG 312 (482)
T ss_pred CCccchhHHHHHHHhcCcccEEeeecCccchHHH
Confidence 9999999999999999999999999999887754
No 8
>KOG3864|consensus
Probab=98.88 E-value=1.1e-09 Score=77.94 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=69.7
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
++.++.++ ..+..+++..+. .++.|+.|++.+|..++|..+.-+..-.++|+.|+|++|++||+.++..|.+ .++|+
T Consensus 103 IeaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred EEEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 56666666 356777777665 7788888888888888888888888877888888888888888888888776 78888
Q ss_pred eeecccCcCcCC
Q psy9585 175 HINISWCINITE 186 (189)
Q Consensus 175 ~L~l~~c~~lt~ 186 (189)
.|.+.+=+.|.+
T Consensus 180 ~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 180 RLHLYDLPYVAN 191 (221)
T ss_pred HHHhcCchhhhc
Confidence 888877655543
No 9
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.80 E-value=8e-09 Score=55.46 Aligned_cols=40 Identities=35% Similarity=0.543 Sum_probs=36.6
Q ss_pred CCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcce
Q psy9585 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSR 69 (189)
Q Consensus 30 LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~ 69 (189)
||+|++..||++++..|+.+++.||++|+.++.++..|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999987776653
No 10
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.78 E-value=1.3e-09 Score=60.86 Aligned_cols=42 Identities=40% Similarity=0.603 Sum_probs=34.5
Q ss_pred hcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCc
Q psy9585 26 INKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67 (189)
Q Consensus 26 ~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~ 67 (189)
.|.+||+|++.+||++|+..|+..++.||++|++++.+...|
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence 478999999999999999999999999999999988654443
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=1.5e-07 Score=73.00 Aligned_cols=87 Identities=30% Similarity=0.366 Sum_probs=42.1
Q ss_pred ccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHH---HcCCCCCEEecCCCCCCCHHHHHHHHh
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALS---KHCAKLQRLDLASCSFITDQSLKALAD 168 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~ 168 (189)
|++|+++++ .+++..+..+.. .+++|+.|++++| .+++.....+. ..+++|++|++++| .+++.++..++.
T Consensus 167 L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~ 243 (319)
T cd00116 167 LKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALAS 243 (319)
T ss_pred cCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHH
Confidence 555555553 344333333322 2335666666554 34443333322 23455666666653 355555555544
Q ss_pred cC----CCCCeeecccCcCcC
Q psy9585 169 GC----RNLTHINISWCINIT 185 (189)
Q Consensus 169 ~~----~~L~~L~l~~c~~lt 185 (189)
.+ ++|++|++++| .++
T Consensus 244 ~~~~~~~~L~~L~l~~n-~i~ 263 (319)
T cd00116 244 ALLSPNISLLTLSLSCN-DIT 263 (319)
T ss_pred HHhccCCCceEEEccCC-CCC
Confidence 33 45666666655 344
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.55 E-value=1.9e-06 Score=66.84 Aligned_cols=118 Identities=23% Similarity=0.267 Sum_probs=82.4
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcC--CCccEEeecCCCCCCHHHHHH---HHHcCCCcceEecccCCCCCHHHHHH
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCG--GFLRQISLRGCQSMTDNSLNI---LAQYCNNVEDINLNLCKKLTDATSLA 139 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~--~~L~~L~l~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~i~~~~~~~ 139 (189)
..++.+++... .+.+..+..+..... .+|+.|+++++ .+++..... ....+++|+.|++++| .+++.++..
T Consensus 165 ~~L~~L~l~~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~ 240 (319)
T cd00116 165 RDLKELNLANN--GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA 240 (319)
T ss_pred CCcCEEECcCC--CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence 34566666543 455455555443322 24999999996 566655443 4456789999999996 688877777
Q ss_pred HHHcC----CCCCEEecCCCCCCCHHHHHHHHhc---CCCCCeeecccCcCcCCCC
Q psy9585 140 LSKHC----AKLQRLDLASCSFITDQSLKALADG---CRNLTHINISWCINITENG 188 (189)
Q Consensus 140 l~~~~----~~L~~L~L~~c~~i~~~~l~~l~~~---~~~L~~L~l~~c~~lt~~~ 188 (189)
+...+ +.|++|++.+|. +++.+...+... +++|++++++++ .++++|
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~ 294 (319)
T cd00116 241 LASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEG 294 (319)
T ss_pred HHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHH
Confidence 77654 799999999964 887666555443 468999999998 677653
No 13
>KOG3864|consensus
Probab=98.35 E-value=8.4e-07 Score=63.53 Aligned_cols=82 Identities=22% Similarity=0.408 Sum_probs=67.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH--HHHHHHhcCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ--SLKALADGCR 171 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~--~l~~l~~~~~ 171 (189)
.++.|.+.+|.++.|..+..+..-.++|+.|++++|..||+.++..+.. +++|+.|.|.+-..+..- ....+-..+|
T Consensus 126 ~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~aLP 204 (221)
T KOG3864|consen 126 SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEEALP 204 (221)
T ss_pred hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHHhCc
Confidence 4999999999999999999999889999999999999999999999876 899999999885544332 2333445567
Q ss_pred CCCee
Q psy9585 172 NLTHI 176 (189)
Q Consensus 172 ~L~~L 176 (189)
++...
T Consensus 205 ~c~I~ 209 (221)
T KOG3864|consen 205 KCDIV 209 (221)
T ss_pred cccee
Confidence 76654
No 14
>KOG1909|consensus
Probab=98.13 E-value=2.3e-05 Score=60.56 Aligned_cols=75 Identities=27% Similarity=0.386 Sum_probs=48.6
Q ss_pred HHHHHHcCCCcceEecccCCCCCHHHHHHHH---HcCCCCCEEecCCCCCCCHHHHHHHHhcC---CCCCeeecccCcCc
Q psy9585 111 LNILAQYCNNVEDINLNLCKKLTDATSLALS---KHCAKLQRLDLASCSFITDQSLKALADGC---RNLTHINISWCINI 184 (189)
Q Consensus 111 l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~~~---~~L~~L~l~~c~~l 184 (189)
+....+.++.|+.+.+.. +.|..+++..+. .+||+|+.|+|.. ..++.++-..++... |+|+.|++++| .+
T Consensus 177 ~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll 253 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LL 253 (382)
T ss_pred HHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-cc
Confidence 444555667777777776 455555554433 3678888888877 557766655555443 56777788888 67
Q ss_pred CCCC
Q psy9585 185 TENG 188 (189)
Q Consensus 185 t~~~ 188 (189)
.++|
T Consensus 254 ~~~G 257 (382)
T KOG1909|consen 254 ENEG 257 (382)
T ss_pred cccc
Confidence 7665
No 15
>KOG3665|consensus
Probab=98.10 E-value=6.9e-06 Score=70.17 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCC
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLT 133 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~ 133 (189)
..++++++++.. .+...+...+....|. |++|.+.|. .+....+..+..++|+|..|+++++ +++
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPs-L~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPS-LRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NIS 186 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcc-cceEEecCc-eecchhHHHHhhccCccceeecCCC-Ccc
Confidence 345566665533 4456667777777775 888888874 4444446667778888888888774 444
No 16
>KOG3207|consensus
Probab=98.03 E-value=4.3e-06 Score=66.31 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=67.3
Q ss_pred ceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCC
Q psy9585 68 SRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKL 147 (189)
Q Consensus 68 ~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L 147 (189)
+.+.+.++ .+.+.......+.|+. ++.|+++......-..+..++..+|+|+.|+|+. +++..-.-......++.|
T Consensus 124 ~~IsLdn~--~V~~~~~~~~~k~~~~-v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 124 REISLDNY--RVEDAGIEEYSKILPN-VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHL 199 (505)
T ss_pred hheeecCc--cccccchhhhhhhCCc-ceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhhh
Confidence 44444444 2322222245666775 8888888754444455666777888888888776 222110000111135778
Q ss_pred CEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585 148 QRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182 (189)
Q Consensus 148 ~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~ 182 (189)
++|.|+.|. ++...+..+...||+|+.|.+.++.
T Consensus 200 K~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 200 KQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred heEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc
Confidence 888888866 7777788888888888888887763
No 17
>KOG1909|consensus
Probab=97.95 E-value=5.1e-05 Score=58.72 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=42.8
Q ss_pred ccEEeecCCCCCCHHH---HHHHHHcCCCcceEecccCCCCCHHHHHHHH----HcCCCCCEEecCCCCCCCHHHHHHHH
Q psy9585 95 LRQISLRGCQSMTDNS---LNILAQYCNNVEDINLNLCKKLTDATSLALS----KHCAKLQRLDLASCSFITDQSLKALA 167 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~L~~c~~i~~~~l~~l~ 167 (189)
|+.|++... .++..+ +......+++|++|+++.| .+.+.+..++. ...|+|+.|.+.++. |+..+...+.
T Consensus 215 LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la 291 (382)
T KOG1909|consen 215 LEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALA 291 (382)
T ss_pred ceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHH
Confidence 666666553 333332 2222334556666666665 34443333332 345666666666633 6555544332
Q ss_pred h---cCCCCCeeecccC
Q psy9585 168 D---GCRNLTHINISWC 181 (189)
Q Consensus 168 ~---~~~~L~~L~l~~c 181 (189)
. ..|.|++|+|++|
T Consensus 292 ~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHhcchhhHHhcCCcc
Confidence 2 2466777777776
No 18
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.95 E-value=1.4e-05 Score=38.23 Aligned_cols=25 Identities=52% Similarity=0.942 Sum_probs=17.0
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHh
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALAD 168 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~ 168 (189)
||+|+.|+|++|..|||.++..|+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4667777777777777777766653
No 19
>KOG3665|consensus
Probab=97.67 E-value=3.4e-05 Score=66.02 Aligned_cols=67 Identities=10% Similarity=0.196 Sum_probs=54.9
Q ss_pred cCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCC
Q psy9585 91 CGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFIT 159 (189)
Q Consensus 91 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~ 159 (189)
...+|++|+++|...++..-...++..+|+|++|.+.+- .+..+.+..+...+|+|..||++++ +|+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~ 186 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NIS 186 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-Ccc
Confidence 345699999999777766667788889999999999994 5666668888999999999999994 344
No 20
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.65 E-value=6.8e-05 Score=35.78 Aligned_cols=25 Identities=36% Similarity=0.708 Sum_probs=21.0
Q ss_pred CCCcceEecccCCCCCHHHHHHHHH
Q psy9585 118 CNNVEDINLNLCKKLTDATSLALSK 142 (189)
Q Consensus 118 ~~~L~~L~l~~~~~i~~~~~~~l~~ 142 (189)
|++|+.|+|++|.+++|.++..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6788889999988899888888764
No 21
>KOG2997|consensus
Probab=97.42 E-value=0.00014 Score=55.59 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=41.6
Q ss_pred hhhcCCCCHHHHHHHHhc-----CChhhhHHHhhhhHHHHHhhhCCCCcceeec
Q psy9585 24 ALINKKLPKELLLRIFSY-----LDVTSLCRCAQVSKAWNILALDGSNWSRIDL 72 (189)
Q Consensus 24 ~~~~~~LP~~il~~I~~~-----L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l 72 (189)
...+..||||||..||.. ++..++.+++.||+.|+..+.++.+|+..-+
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 344789999999999974 5678899999999999999999988876543
No 22
>KOG0281|consensus
Probab=97.41 E-value=9.6e-05 Score=57.07 Aligned_cols=48 Identities=35% Similarity=0.668 Sum_probs=44.3
Q ss_pred hhhcCCCC----HHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585 24 ALINKKLP----KELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID 71 (189)
Q Consensus 24 ~~~~~~LP----~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~ 71 (189)
.+.+..|| +++.+.||+||+..++..|-.||++|+.+..++..|+.+-
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 46788999 9999999999999999999999999999999999998863
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.10 E-value=0.00014 Score=51.85 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=30.3
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCCHHH--HHHHHhcCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFITDQS--LKALADGCR 171 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~~~~--l~~l~~~~~ 171 (189)
|+.|.+++. .++.-. ..+...+|+|++|.+++ ..+.+ ..+..+. .+|+|+.|+|.+ ..+++.. -..+...+|
T Consensus 66 L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~-~l~~L~~L~L~~-NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 66 LKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSN-NKISDLNELEPLS-SLPKLRVLSLEG-NPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp --EEE--SS----S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGGG-G-TT--EEE-TT--GGGGSTTHHHHHHHH-T
T ss_pred hhhcccCCC-CCCccc-cchHHhCCcCCEEECcC-CcCCChHHhHHHH-cCCCcceeeccC-CcccchhhHHHHHHHHcC
Confidence 777777763 333221 12223567777777776 44443 2233332 477777777777 3344321 233444577
Q ss_pred CCCeeeccc
Q psy9585 172 NLTHINISW 180 (189)
Q Consensus 172 ~L~~L~l~~ 180 (189)
+|+.||-..
T Consensus 141 ~Lk~LD~~~ 149 (175)
T PF14580_consen 141 SLKVLDGQD 149 (175)
T ss_dssp T-SEETTEE
T ss_pred hhheeCCEE
Confidence 777776543
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.08 E-value=0.00033 Score=49.86 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=37.1
Q ss_pred CcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCC
Q psy9585 66 NWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCA 145 (189)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 145 (189)
..+.+++.+. .++ .++.+..... +|+.|+++++.-..-+++ ..+++|++|.+++ ..++.-. ..+...+|
T Consensus 20 ~~~~L~L~~n--~I~--~Ie~L~~~l~-~L~~L~Ls~N~I~~l~~l----~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRGN--QIS--TIENLGATLD-KLEVLDLSNNQITKLEGL----PGLPRLKTLDLSN-NRISSIS-EGLDKNLP 88 (175)
T ss_dssp --------------------S--TT-T-T--EEE-TTS--S--TT--------TT--EEE--S-S---S-C-HHHHHH-T
T ss_pred cccccccccc--ccc--cccchhhhhc-CCCEEECCCCCCccccCc----cChhhhhhcccCC-CCCCccc-cchHHhCC
Confidence 3455666544 222 2444443333 499999998632222222 2578999999998 5666421 23444589
Q ss_pred CCCEEecCCCCCCCH-HHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585 146 KLQRLDLASCSFITD-QSLKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 146 ~L~~L~L~~c~~i~~-~~l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
+|++|.|++ ..|.+ ..+..+. .+|+|+.|++.+++ +++
T Consensus 89 ~L~~L~L~~-N~I~~l~~l~~L~-~l~~L~~L~L~~NP-v~~ 127 (175)
T PF14580_consen 89 NLQELYLSN-NKISDLNELEPLS-SLPKLRVLSLEGNP-VCE 127 (175)
T ss_dssp T--EEE-TT-S---SCCCCGGGG-G-TT--EEE-TT-G-GGG
T ss_pred cCCEEECcC-CcCCChHHhHHHH-cCCCcceeeccCCc-ccc
Confidence 999999998 55654 2245554 48999999999985 544
No 25
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.08 E-value=0.00059 Score=36.98 Aligned_cols=37 Identities=35% Similarity=0.425 Sum_probs=18.3
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
++|++|+|++ ..|++ +......+++|+.|++++| .++
T Consensus 1 ~~L~~L~l~~-N~i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSN-NQITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETS-SS-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccC-CCCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence 3566666666 33543 2332234666666666666 344
No 26
>KOG3207|consensus
Probab=97.06 E-value=0.00032 Score=56.03 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=64.3
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCC---CHHHHHHHHhcC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFI---TDQSLKALADGC 170 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i---~~~~l~~l~~~~ 170 (189)
+|+.+.+.++ .+.+.........|++++.|+|+...--....+..|+..+|+|+.|+|+. ..+ .++.... ..
T Consensus 122 kL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~---~l 196 (505)
T KOG3207|consen 122 KLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTL---LL 196 (505)
T ss_pred hhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchh---hh
Confidence 4888889885 56666655677799999999999854455678899999999999999986 222 1211221 35
Q ss_pred CCCCeeecccCcCcC
Q psy9585 171 RNLTHINISWCINIT 185 (189)
Q Consensus 171 ~~L~~L~l~~c~~lt 185 (189)
++|+.|.|+.| .++
T Consensus 197 ~~lK~L~l~~C-Gls 210 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLS 210 (505)
T ss_pred hhhheEEeccC-CCC
Confidence 78999999999 565
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.81 E-value=0.023 Score=43.24 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=52.5
Q ss_pred HHHcCCCcceEecccCCCCCHHHHHHHH----HcCCCCCEEecCCCCCCCHHHHHHHHhcC---CCCCeeecccCcCcCC
Q psy9585 114 LAQYCNNVEDINLNLCKKLTDATSLALS----KHCAKLQRLDLASCSFITDQSLKALADGC---RNLTHINISWCINITE 186 (189)
Q Consensus 114 l~~~~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~L~~c~~i~~~~l~~l~~~~---~~L~~L~l~~c~~lt~ 186 (189)
...+-.+|+.+.+.. +.|..+++..+. .++.+|+.|+|.. ..+|..+-..++... +.|+.|++.+| .++.
T Consensus 180 ~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDC-lls~ 256 (388)
T COG5238 180 LLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDC-LLSN 256 (388)
T ss_pred HHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccch-hhcc
Confidence 333446788888877 567777655543 3689999999988 668888777766654 46799999999 6777
Q ss_pred CC
Q psy9585 187 NG 188 (189)
Q Consensus 187 ~~ 188 (189)
+|
T Consensus 257 ~G 258 (388)
T COG5238 257 EG 258 (388)
T ss_pred cc
Confidence 66
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.80 E-value=3e-05 Score=45.18 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585 119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182 (189)
Q Consensus 119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~ 182 (189)
|+|++|.++++ .++.-. ......+++|++|++++ ..++.-.-. ...++++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~-N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSN-NNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETS-SSESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccC-CccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 56788888775 444211 12234578888888887 335422222 23457888888888873
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.72 E-value=0.0017 Score=59.22 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=25.3
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
.+++|++|+|++|..++.- ..-...+++|+.|++++|..++
T Consensus 867 ~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRV--SLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cCCCCCEEECCCCCCcCcc--CcccccccCCCeeecCCCcccc
Confidence 4677777777777766531 1112345677777777776654
No 30
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.69 E-value=0.0016 Score=51.63 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=33.8
Q ss_pred hcCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHHhhh
Q psy9585 26 INKKLPKELLLRIFSYLD-VTSLCRCAQVSKAWNILAL 62 (189)
Q Consensus 26 ~~~~LP~~il~~I~~~L~-~~~~~~~~~v~~~w~~~~~ 62 (189)
.|++||+|+|..|...|+ ..|+.+.+.||+.||..+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 599999999999999994 5899999999999999764
No 31
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.69 E-value=0.0025 Score=57.02 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=5.2
Q ss_pred CCCCCEEecCC
Q psy9585 144 CAKLQRLDLAS 154 (189)
Q Consensus 144 ~~~L~~L~L~~ 154 (189)
+++|++|+|++
T Consensus 163 l~~L~~L~L~~ 173 (968)
T PLN00113 163 FSSLKVLDLGG 173 (968)
T ss_pred CCCCCEEECcc
Confidence 44444444444
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.49 E-value=0.0025 Score=58.19 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=30.3
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCIN 183 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 183 (189)
.+++|+.|+|.+|..+. .+..-...+++|+.|++++|..++.-. . ..++++|+.|++++|..
T Consensus 655 ~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp--~-~i~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 655 MATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILP--T-GINLKSLYRLNLSGCSR 716 (1153)
T ss_pred cCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccC--C-cCCCCCCCEEeCCCCCC
Confidence 34566666666654432 122222345666666666665443211 0 01355666666666643
No 33
>KOG2739|consensus
Probab=96.40 E-value=0.00082 Score=50.18 Aligned_cols=85 Identities=24% Similarity=0.272 Sum_probs=54.6
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCC--CCHHHHHHHHhcC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSF--ITDQSLKALADGC 170 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~--i~~~~l~~l~~~~ 170 (189)
+||+|.++.........+..++..+|+|++|++++ +++.+ +.+..+. .+++|..|++.+|.. ++|. -+.++...
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll 142 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVFLLL 142 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhh-hhcchhhhhcccCCccccccH-HHHHHHHh
Confidence 48888887754445556667777788888888888 45553 3344433 367788888888753 2222 23344446
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
|+|++|+-..+
T Consensus 143 ~~L~~LD~~dv 153 (260)
T KOG2739|consen 143 PSLKYLDGCDV 153 (260)
T ss_pred hhhcccccccc
Confidence 88888876655
No 34
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.40 E-value=0.0028 Score=29.40 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=11.6
Q ss_pred CCCCEEecCCCCCCCHHHHHHHH
Q psy9585 145 AKLQRLDLASCSFITDQSLKALA 167 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~ 167 (189)
++|++|+|++|. |+++++..|+
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 556666666644 6666665554
No 35
>KOG0618|consensus
Probab=96.35 E-value=0.0028 Score=55.21 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCccEEeecCCC--CCCHHHHHHHHHcCCCcceEecccCCCCCH---H------------------HHHHHHHcCCCCCE
Q psy9585 93 GFLRQISLRGCQ--SMTDNSLNILAQYCNNVEDINLNLCKKLTD---A------------------TSLALSKHCAKLQR 149 (189)
Q Consensus 93 ~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~---~------------------~~~~l~~~~~~L~~ 149 (189)
.+||.|+|++.. .+++..+. .++.|++|.|+| +.++. . .+..+. .++.|+.
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~-~l~qL~~ 456 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA-QLPQLKV 456 (1081)
T ss_pred cceeeeeecccccccCCHHHHh----chHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhh-hcCcceE
Confidence 468888888852 24444433 556777777777 33332 1 112222 3688889
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCeeecccCcC
Q psy9585 150 LDLASCSFITDQSLKALADGCRNLTHINISWCIN 183 (189)
Q Consensus 150 L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 183 (189)
+||+. ..++...+..... -|+|++|+++|+.+
T Consensus 457 lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred Eeccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence 99984 7787766665443 38999999999864
No 36
>KOG2123|consensus
Probab=96.32 E-value=0.0015 Score=49.58 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=32.0
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC---CCCCCHHHHHHHHhcCCCCCeee
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS---CSFITDQSLKALADGCRNLTHIN 177 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~---c~~i~~~~l~~l~~~~~~L~~L~ 177 (189)
.|++|++|.|+. +.|.+-.-..-.+++|+|++|-|.. |..-+.+.-..+.+.+|||++|+
T Consensus 61 rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 61 RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 667777777765 2343322222234577777776654 22222333334556677777775
No 37
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.05 E-value=0.0069 Score=54.28 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=16.7
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
+++|++|+|+++. ++......+ ..+++|++|++++|
T Consensus 211 l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n 246 (968)
T PLN00113 211 MKSLKWIYLGYNN-LSGEIPYEI-GGLTSLNHLDLVYN 246 (968)
T ss_pred cCCccEEECcCCc-cCCcCChhH-hcCCCCCEEECcCc
Confidence 4445555554422 322222222 23566666666666
No 38
>PLN03150 hypothetical protein; Provisional
Probab=96.05 E-value=0.0087 Score=51.18 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=17.1
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
.+++|+.|+|+++ .++...-.. ...+++|++|+|++
T Consensus 464 ~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 464 SITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNG 499 (623)
T ss_pred CCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcC
Confidence 4555666666553 333222222 22355666666655
No 39
>KOG2982|consensus
Probab=95.81 E-value=0.0075 Score=46.38 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCCccEEeecCCCCCCHH-HHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCC
Q psy9585 81 GPVLENISRRCGGFLRQISLRGCQSMTDN-SLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFIT 159 (189)
Q Consensus 81 ~~~l~~l~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~ 159 (189)
...+..+...+.. ++++++.+. .+++. .+..+..+.|.|+.|+|+. +.++. .+..+.....+|++|.|.| +.+.
T Consensus 60 ~gd~~~~~~~~~~-v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~-N~L~s-~I~~lp~p~~nl~~lVLNg-T~L~ 134 (418)
T KOG2982|consen 60 EGDVMLFGSSVTD-VKELDLTGN-LISDWSEIGAILEQLPALTTLNLSC-NSLSS-DIKSLPLPLKNLRVLVLNG-TGLS 134 (418)
T ss_pred chhHHHHHHHhhh-hhhhhcccc-hhccHHHHHHHHhcCccceEeeccC-CcCCC-ccccCcccccceEEEEEcC-CCCC
Confidence 3456677777775 999999884 56654 4566788999999999986 44432 2233322357899999999 6688
Q ss_pred HHHHHHHHhcCCCCCeeecccC
Q psy9585 160 DQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 160 ~~~l~~l~~~~~~L~~L~l~~c 181 (189)
-.....+....|+++.|+++.+
T Consensus 135 w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 135 WTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhhcchhhhhhhhccc
Confidence 8888888888899999988776
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.79 E-value=0.0089 Score=32.28 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCC
Q psy9585 119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFIT 159 (189)
Q Consensus 119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~ 159 (189)
++|++|+++++ .+++ +......+++|++|+++++ .|+
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence 46788888773 5653 4442345788888888874 354
No 41
>KOG2739|consensus
Probab=95.64 E-value=0.0065 Score=45.48 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=52.0
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCH-HHHHHHHhcCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITD-QSLKALADGCRNL 173 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~-~~l~~l~~~~~~L 173 (189)
++.|++.++...+...+. ..|+|++|.++.-+.-..-++..++..+|+|++|+|++ ..|.+ ..+..+. ..++|
T Consensus 45 le~ls~~n~gltt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~-~l~nL 118 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLK-ELENL 118 (260)
T ss_pred hhhhhhhccceeecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhh-hhcch
Confidence 555555544333333322 45689999988632223346677777789999999998 66764 3344433 36788
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
..|++++|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 999999984
No 42
>KOG2982|consensus
Probab=95.58 E-value=0.011 Score=45.49 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=59.5
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
++-|.+.+|.-=+.-....++..++.++.|+|.+..--+...+.+|..++|.|++|+|+. ..+. ..+..+.....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~-s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLS-SDIKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCC-CccccCcccccceE
Confidence 344556665322334456678889999999999954445678889999999999999996 6554 33444433356889
Q ss_pred eeecccC
Q psy9585 175 HINISWC 181 (189)
Q Consensus 175 ~L~l~~c 181 (189)
.|.+.|-
T Consensus 125 ~lVLNgT 131 (418)
T KOG2982|consen 125 VLVLNGT 131 (418)
T ss_pred EEEEcCC
Confidence 8888764
No 43
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.54 E-value=0.014 Score=26.94 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCCcceEecccCCCCCHHHHHHHH
Q psy9585 118 CNNVEDINLNLCKKLTDATSLALS 141 (189)
Q Consensus 118 ~~~L~~L~l~~~~~i~~~~~~~l~ 141 (189)
|++|++|+|++| .++++++..|+
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 578888888886 48888887765
No 44
>KOG2123|consensus
Probab=94.67 E-value=0.025 Score=43.22 Aligned_cols=86 Identities=19% Similarity=0.299 Sum_probs=57.4
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
++++|++.|| .++|.. +....+.|+.|.|+- +.|+ .+..+. .|++|+.|.|.. ..|.+-.=..-.++.|+|
T Consensus 20 ~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSv-NkIs--sL~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSV-NKIS--SLAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPSL 90 (388)
T ss_pred HhhhhcccCC-CccHHH---HHHhcccceeEEeec-cccc--cchhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCchh
Confidence 4888888886 455544 344678888888876 4555 344544 488888888887 556554433335668888
Q ss_pred CeeecccCcCcCCCC
Q psy9585 174 THINISWCINITENG 188 (189)
Q Consensus 174 ~~L~l~~c~~lt~~~ 188 (189)
+.|.|..++-....|
T Consensus 91 r~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAG 105 (388)
T ss_pred hhHhhccCCcccccc
Confidence 888887776554443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.57 E-value=0.0014 Score=37.98 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=38.9
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCS 156 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~ 156 (189)
+|++|.++++ .++.-. ......+++|++|+++++ .++.-.. .....+++|++|+++++.
T Consensus 2 ~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEEC-TTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 4889999886 333221 123347799999999974 5543221 234568999999999853
No 46
>PLN03150 hypothetical protein; Provisional
Probab=94.52 E-value=0.054 Score=46.40 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=55.0
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
++.|.|.++. +....-. -...+++|+.|+|+++ .++.. +......+++|+.|+|+++ .++...-..+. .+++|+
T Consensus 420 v~~L~L~~n~-L~g~ip~-~i~~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPN-DISKLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLR 493 (623)
T ss_pred EEEEECCCCC-ccccCCH-HHhCCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCC
Confidence 7888888753 3222112 2347899999999985 45432 2222456899999999994 46544334444 489999
Q ss_pred eeecccCc
Q psy9585 175 HINISWCI 182 (189)
Q Consensus 175 ~L~l~~c~ 182 (189)
.|+|++|.
T Consensus 494 ~L~Ls~N~ 501 (623)
T PLN03150 494 ILNLNGNS 501 (623)
T ss_pred EEECcCCc
Confidence 99999883
No 47
>KOG4194|consensus
Probab=94.32 E-value=0.018 Score=48.30 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=41.3
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+++.+.... -..++.++....+|+.|.|.+ +.|+.-.-..+. ..|.|++|+|+. ..|+.-....+.. -+++
T Consensus 103 nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~-~l~alrslDLSr-N~is~i~~~sfp~-~~ni 175 (873)
T KOG4194|consen 103 NLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRH-NLISSVTSEELS-ALPALRSLDLSR-NLISEIPKPSFPA-KVNI 175 (873)
T ss_pred cceeeeeccch---hhhcccccccccceeEEeeec-cccccccHHHHH-hHhhhhhhhhhh-chhhcccCCCCCC-CCCc
Confidence 47777776632 122333443445677777766 344432222322 245666666665 3333211111111 2456
Q ss_pred CeeecccCcCcCC
Q psy9585 174 THINISWCINITE 186 (189)
Q Consensus 174 ~~L~l~~c~~lt~ 186 (189)
++|+++++ ++|+
T Consensus 176 ~~L~La~N-~It~ 187 (873)
T KOG4194|consen 176 KKLNLASN-RITT 187 (873)
T ss_pred eEEeeccc-cccc
Confidence 67777665 4554
No 48
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.30 E-value=0.087 Score=25.31 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=16.1
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585 145 AKLQRLDLASCSFITDQSLKALADG 169 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~~~ 169 (189)
++|++|+|++ ..+++++...|+..
T Consensus 2 ~~L~~LdL~~-N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSN-NKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCC-CCCCHHHHHHHHHH
Confidence 4677777776 44777777776653
No 49
>KOG3763|consensus
Probab=94.17 E-value=0.097 Score=43.45 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=61.6
Q ss_pred HHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccC--CCCCHHHHHHHHHcCCCCCEEecCC---CCCCC
Q psy9585 85 ENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLC--KKLTDATSLALSKHCAKLQRLDLAS---CSFIT 159 (189)
Q Consensus 85 ~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~i~~~~~~~l~~~~~~L~~L~L~~---c~~i~ 159 (189)
.......+. +.+++|++.....-..+..+....|+|+.|+|++. ..-++..+..+ +..-|++|-+.| |+.+.
T Consensus 211 ~~~~~n~p~-i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 211 KHIEENFPE-ILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHhhcCCcc-eeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 334445555 88999988766677778888889999999999984 12222233332 357788999988 44444
Q ss_pred HH--HHHHHHhcCCCCCeee
Q psy9585 160 DQ--SLKALADGCRNLTHIN 177 (189)
Q Consensus 160 ~~--~l~~l~~~~~~L~~L~ 177 (189)
+. .+.+|...+|+|..||
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 43 3666777789888875
No 50
>KOG4194|consensus
Probab=94.16 E-value=0.036 Score=46.56 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=30.2
Q ss_pred cCCCcceEecccCCCCC---HHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLT---DATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~---~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
...+|++|+|+. +.++ +++... ...++.|+.|.|.| .++..-.=.+ ..+++.|++|++.++
T Consensus 363 ~lssL~~LdLr~-N~ls~~IEDaa~~-f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 363 GLSSLHKLDLRS-NELSWCIEDAAVA-FNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN 426 (873)
T ss_pred HhhhhhhhcCcC-CeEEEEEecchhh-hccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC
Confidence 345666666554 2222 112222 33467777777766 4443222222 223677777777665
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.94 E-value=0.49 Score=36.36 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=25.9
Q ss_pred CCCCEEecCCCCCCCHHHHHHHH----hcCCCCCeeecccCcCcCCCC
Q psy9585 145 AKLQRLDLASCSFITDQSLKALA----DGCRNLTHINISWCINITENG 188 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~----~~~~~L~~L~l~~c~~lt~~~ 188 (189)
.+|+++.+.. ..|-.+++..++ ..|.+|+.|++.++ .+|-.|
T Consensus 185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~g 230 (388)
T COG5238 185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEG 230 (388)
T ss_pred cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhh
Confidence 3455555544 446666655543 34788999999887 565554
No 52
>PF13013 F-box-like_2: F-box-like domain
Probab=93.53 E-value=0.12 Score=33.82 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=26.8
Q ss_pred hcCCCCHHHHHHHHhcCChhhhHHHhhhhH
Q psy9585 26 INKKLPKELLLRIFSYLDVTSLCRCAQVSK 55 (189)
Q Consensus 26 ~~~~LP~~il~~I~~~L~~~~~~~~~~v~~ 55 (189)
.+.+||+|++..||.+-...++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478999999999999999888888888777
No 53
>KOG1859|consensus
Probab=93.52 E-value=0.045 Score=47.18 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
+|.|+.|+|++ ..+++.. .|. .|++|++|+|+++
T Consensus 186 l~ale~LnLsh-Nk~~~v~--~Lr-~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD--NLR-RLPKLKHLDLSYN 219 (1096)
T ss_pred HHHhhhhccch-hhhhhhH--HHH-hcccccccccccc
Confidence 57788999998 6676544 333 4899999999876
No 54
>KOG0472|consensus
Probab=93.48 E-value=0.025 Score=45.37 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=27.4
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCIN 183 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 183 (189)
+.+|.+|+|.+ ..+ ..+..+..+|.+|++|++.|++.
T Consensus 504 m~nL~tLDL~n-Ndl--q~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDL--QQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhcceeccCC-Cch--hhCChhhccccceeEEEecCCcc
Confidence 67788888887 433 44555677788999999988753
No 55
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.13 E-value=0.076 Score=22.32 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=6.7
Q ss_pred CCCCeeecccCc
Q psy9585 171 RNLTHINISWCI 182 (189)
Q Consensus 171 ~~L~~L~l~~c~ 182 (189)
++|+.|+|++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 456777777763
No 56
>KOG1644|consensus
Probab=91.52 E-value=0.16 Score=37.09 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=44.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCCHHHHHH--HHhcC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFITDQSLKA--LADGC 170 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~--l~~~~ 170 (189)
.|..|.+.+. .++.-+ ..+....|+|+.|.|.+ +.+-. ..+..++ .||.|++|.+-+ ..+++..-.. +....
T Consensus 65 rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p~L~~Ltll~-Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 65 RLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTN-NSIQELGDLDPLA-SCPKLEYLTLLG-NPVEHKKNYRLYVLYKL 139 (233)
T ss_pred ccceEEecCC-cceeec-cchhhhccccceEEecC-cchhhhhhcchhc-cCCccceeeecC-CchhcccCceeEEEEec
Confidence 3777777663 343322 12334557777777776 22221 2233333 377888887776 4455443111 22235
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
|+|+.|++...
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 77777777654
No 57
>KOG0444|consensus
Probab=91.22 E-value=0.018 Score=48.80 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=6.7
Q ss_pred CccEEeecCC
Q psy9585 94 FLRQISLRGC 103 (189)
Q Consensus 94 ~L~~L~l~~~ 103 (189)
+|++|+|++.
T Consensus 246 ~LrrLNLS~N 255 (1255)
T KOG0444|consen 246 NLRRLNLSGN 255 (1255)
T ss_pred hhheeccCcC
Confidence 3777777763
No 58
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=91.16 E-value=0.16 Score=24.01 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=16.3
Q ss_pred CCCEEecCCCCCCCHHHHHHHHhcCC
Q psy9585 146 KLQRLDLASCSFITDQSLKALADGCR 171 (189)
Q Consensus 146 ~L~~L~L~~c~~i~~~~l~~l~~~~~ 171 (189)
+|++|.|..+..-.+..++.+..+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 36677777655444456777776665
No 59
>KOG0444|consensus
Probab=91.04 E-value=0.079 Score=45.16 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=16.4
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEeccc
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNL 128 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 128 (189)
+|++|.|++. .+....+..+. +.+.|+.|++++
T Consensus 174 ~LqtL~Ls~N-PL~hfQLrQLP-smtsL~vLhms~ 206 (1255)
T KOG0444|consen 174 MLQTLKLSNN-PLNHFQLRQLP-SMTSLSVLHMSN 206 (1255)
T ss_pred hhhhhhcCCC-hhhHHHHhcCc-cchhhhhhhccc
Confidence 3777777764 22222333222 344555556655
No 60
>KOG0274|consensus
Probab=90.98 E-value=0.097 Score=43.99 Aligned_cols=46 Identities=37% Similarity=0.548 Sum_probs=39.5
Q ss_pred chhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCc
Q psy9585 22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67 (189)
Q Consensus 22 ~~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~ 67 (189)
...+.+..||.|+...|+.||+.+++..+++||+.|+.+..+-..|
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 3457789999999999999999999999999999999987554433
No 61
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=90.91 E-value=0.23 Score=31.66 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.3
Q ss_pred hhcCCCCHHHHHHHHhcCChhhhHHH
Q psy9585 25 LINKKLPKELLLRIFSYLDVTSLCRC 50 (189)
Q Consensus 25 ~~~~~LP~~il~~I~~~L~~~~~~~~ 50 (189)
..|..||.|+...|+++|+..|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 77999999999999999999887543
No 62
>KOG1644|consensus
Probab=87.70 E-value=0.2 Score=36.55 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCCCCEEecCCCCCCCHH-HHHHHHhcCCCCCeeecccC
Q psy9585 144 CAKLQRLDLASCSFITDQ-SLKALADGCRNLTHINISWC 181 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~-~l~~l~~~~~~L~~L~l~~c 181 (189)
+|+|.+|.|.+ ..|..- .+..++. ||+|++|.+-++
T Consensus 87 ~p~l~~L~Ltn-Nsi~~l~dl~pLa~-~p~L~~Ltll~N 123 (233)
T KOG1644|consen 87 LPNLKTLILTN-NSIQELGDLDPLAS-CPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecC-cchhhhhhcchhcc-CCccceeeecCC
Confidence 45555555554 223221 1333332 555555555444
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.43 E-value=0.51 Score=38.35 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=45.4
Q ss_pred HcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585 90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG 169 (189)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~ 169 (189)
.|. ++++|.+++| .++ .+..-.++|++|.+++|..++. +.... .++|++|.+++|..+.. +
T Consensus 50 ~~~-~l~~L~Is~c-~L~-----sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~s-----L--- 110 (426)
T PRK15386 50 EAR-ASGRLYIKDC-DIE-----SLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISG-----L--- 110 (426)
T ss_pred Hhc-CCCEEEeCCC-CCc-----ccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccc-----c---
Confidence 354 4999999997 322 1111234799999999987632 22211 36899999999876641 1
Q ss_pred CCCCCeeeccc
Q psy9585 170 CRNLTHINISW 180 (189)
Q Consensus 170 ~~~L~~L~l~~ 180 (189)
-+.|+.|++.+
T Consensus 111 P~sLe~L~L~~ 121 (426)
T PRK15386 111 PESVRSLEIKG 121 (426)
T ss_pred ccccceEEeCC
Confidence 13466666643
No 64
>KOG1259|consensus
Probab=85.19 E-value=1 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=17.5
Q ss_pred CCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 118 CNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 118 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
.|.++.|.++. +.+. .+..+ +.+++|+.|+|++
T Consensus 306 ~Pkir~L~lS~-N~i~--~v~nL-a~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 306 APKLRRLILSQ-NRIR--TVQNL-AELPQLQLLDLSG 338 (490)
T ss_pred ccceeEEeccc-ccee--eehhh-hhcccceEeeccc
Confidence 45666666665 3333 12232 2356666666666
No 65
>KOG0618|consensus
Probab=84.97 E-value=0.12 Score=45.69 Aligned_cols=56 Identities=16% Similarity=0.366 Sum_probs=36.8
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCC---CCHHHHHHHHHcCCCCCEEecCCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKK---LTDATSLALSKHCAKLQRLDLASCSFI 158 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~---i~~~~~~~l~~~~~~L~~L~L~~c~~i 158 (189)
|+.|.+.+ ..++|..+..+. .+++|+.|+|+. ++ +++..+. +++.|+.|+|+| ..+
T Consensus 361 Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsy-NrL~~fpas~~~----kle~LeeL~LSG-NkL 419 (1081)
T KOG0618|consen 361 LQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSY-NRLNSFPASKLR----KLEELEELNLSG-NKL 419 (1081)
T ss_pred HHHHHHhc-Ccccccchhhhc-cccceeeeeecc-cccccCCHHHHh----chHHhHHHhccc-chh
Confidence 44444544 356777776554 889999999998 33 4444433 357788899988 434
No 66
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=84.91 E-value=1 Score=39.69 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=5.7
Q ss_pred CCCCEEecCC
Q psy9585 145 AKLQRLDLAS 154 (189)
Q Consensus 145 ~~L~~L~L~~ 154 (189)
++|+.|+|++
T Consensus 302 ~~L~~LdLS~ 311 (788)
T PRK15387 302 PGLQELSVSD 311 (788)
T ss_pred cccceeECCC
Confidence 4556666655
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.67 E-value=0.46 Score=21.22 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=9.0
Q ss_pred CCCeeecccCcCcC
Q psy9585 172 NLTHINISWCINIT 185 (189)
Q Consensus 172 ~L~~L~l~~c~~lt 185 (189)
+|++|++++| .++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 4677888777 554
No 68
>KOG3926|consensus
Probab=84.45 E-value=0.52 Score=35.78 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=42.3
Q ss_pred ccccchhhhcCCCCHHHHHHHHhcCCh-hhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585 18 VFLEDEALINKKLPKELLLRIFSYLDV-TSLCRCAQVSKAWNILALDGSNWSRID 71 (189)
Q Consensus 18 ~~~~~~~~~~~~LP~~il~~I~~~L~~-~~~~~~~~v~~~w~~~~~~~~~~~~~~ 71 (189)
..+......+.+||.+++..|+..++. .|+..+++|......+..+..+|+.+.
T Consensus 193 ~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLc 247 (332)
T KOG3926|consen 193 TEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLC 247 (332)
T ss_pred cCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334445677999999999999998865 889899988888777776666777664
No 69
>KOG4237|consensus
Probab=83.27 E-value=0.93 Score=36.59 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=32.7
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
..++|++|+|++ +.++.-.-.+ +.....|+.|.|.. ..+. ..-....++...|+.|+++++ ++|
T Consensus 272 ~L~~L~~lnlsn-N~i~~i~~~a-Fe~~a~l~eL~L~~-N~l~-~v~~~~f~~ls~L~tL~L~~N-~it 335 (498)
T KOG4237|consen 272 KLPNLRKLNLSN-NKITRIEDGA-FEGAAELQELYLTR-NKLE-FVSSGMFQGLSGLKTLSLYDN-QIT 335 (498)
T ss_pred hcccceEeccCC-Cccchhhhhh-hcchhhhhhhhcCc-chHH-HHHHHhhhccccceeeeecCC-eeE
Confidence 556677777766 4454322222 22244555555554 2222 111223445677888888776 454
No 70
>KOG1259|consensus
Probab=83.24 E-value=0.51 Score=36.79 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=38.8
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~ 182 (189)
.++-|++|+|++ +.|+ .+..-.+-.|.++.|++++ ..|+..+- ++ ..++|.+|+++++.
T Consensus 282 TWq~LtelDLS~-N~I~--~iDESvKL~Pkir~L~lS~-N~i~~v~n--La-~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 282 TWQELTELDLSG-NLIT--QIDESVKLAPKLRRLILSQ-NRIRTVQN--LA-ELPQLQLLDLSGNL 340 (490)
T ss_pred hHhhhhhccccc-cchh--hhhhhhhhccceeEEeccc-cceeeehh--hh-hcccceEeecccch
Confidence 455688889988 4444 2222233368999999998 55653322 33 26899999999873
No 71
>KOG4658|consensus
Probab=82.57 E-value=1.2 Score=40.00 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=21.5
Q ss_pred HHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 115 AQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 115 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
....|.|..|+|++|..+. .++.....+-+|++|+|++
T Consensus 567 f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccC
Confidence 3466777777777654433 2222233355666666666
No 72
>KOG4308|consensus
Probab=82.34 E-value=0.41 Score=39.75 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=5.7
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
|++++.|.+++.
T Consensus 289 ~~~l~~l~l~~n 300 (478)
T KOG4308|consen 289 CRQLEELSLSNN 300 (478)
T ss_pred hHHHHHhhcccC
Confidence 444445544443
No 73
>KOG4579|consensus
Probab=81.23 E-value=0.79 Score=31.62 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=47.5
Q ss_pred eeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCC
Q psy9585 69 RIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQ 148 (189)
Q Consensus 69 ~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~ 148 (189)
.++++.++-..-.+.+..+.... .|+..++++... ...-+.+...++.++.|+|.+ +.+.+--.. + ..+|.|+
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~--el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~-neisdvPeE-~-Aam~aLr 103 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGY--ELTKISLSDNGF--KKFPKKFTIKFPTATTLNLAN-NEISDVPEE-L-AAMPALR 103 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCc--eEEEEecccchh--hhCCHHHhhccchhhhhhcch-hhhhhchHH-H-hhhHHhh
Confidence 34555443222234444443333 377788877421 111234555778899999988 556543333 3 3489999
Q ss_pred EEecCCCCCCC
Q psy9585 149 RLDLASCSFIT 159 (189)
Q Consensus 149 ~L~L~~c~~i~ 159 (189)
.|++.. ..+.
T Consensus 104 ~lNl~~-N~l~ 113 (177)
T KOG4579|consen 104 SLNLRF-NPLN 113 (177)
T ss_pred hccccc-Cccc
Confidence 999998 4454
No 74
>KOG3735|consensus
Probab=80.84 E-value=4.8 Score=31.71 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=60.7
Q ss_pred HcCCCccEEeecCCCCCCHHHHHHHHHc---CCCcceEecccCCCCCHHH---HHHHHHcCCCCCEEecCCCCCCCHHHH
Q psy9585 90 RCGGFLRQISLRGCQSMTDNSLNILAQY---CNNVEDINLNLCKKLTDAT---SLALSKHCAKLQRLDLASCSFITDQSL 163 (189)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~---~~~l~~~~~~L~~L~L~~c~~i~~~~l 163 (189)
.+.+.++.+++++...++...+..+... ....+.+++.+ ...++.. +..+...++.|++|++.+ ..||..++
T Consensus 195 ~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnves-nFItg~gi 272 (353)
T KOG3735|consen 195 ENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVES-NFITGLGI 272 (353)
T ss_pred cCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheeccc-cccccHHH
Confidence 3344599999999888988887766544 34577777776 4455433 334445789999999998 78999998
Q ss_pred HHHHhcCC---CCCeeec
Q psy9585 164 KALADGCR---NLTHINI 178 (189)
Q Consensus 164 ~~l~~~~~---~L~~L~l 178 (189)
.++.+... .|..|.+
T Consensus 273 ~a~~~al~~n~tl~el~~ 290 (353)
T KOG3735|consen 273 MALLRALQSNKSLTELKN 290 (353)
T ss_pred HHHHHHHhccchhhHhhh
Confidence 88876443 3444444
No 75
>KOG4658|consensus
Probab=80.04 E-value=1.3 Score=39.68 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=47.5
Q ss_pred CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585 93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN 172 (189)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~ 172 (189)
+.|+.|+++++... ..++..+..+-+|+.|+++++ .+. .++.=...++.|.+|++..+.... .+..+....++
T Consensus 571 ~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~ 643 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQS 643 (889)
T ss_pred cceEEEECCCCCcc--CcCChHHhhhhhhhcccccCC-Ccc--ccchHHHHHHhhheeccccccccc--cccchhhhccc
Confidence 35888899875432 233333445668888888884 454 222223345677788887644321 11334444677
Q ss_pred CCeeecccC
Q psy9585 173 LTHINISWC 181 (189)
Q Consensus 173 L~~L~l~~c 181 (189)
|++|.+..-
T Consensus 644 Lr~L~l~~s 652 (889)
T KOG4658|consen 644 LRVLRLPRS 652 (889)
T ss_pred ccEEEeecc
Confidence 777777654
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=79.22 E-value=3.2 Score=33.92 Aligned_cols=89 Identities=19% Similarity=0.341 Sum_probs=52.4
Q ss_pred CcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCC
Q psy9585 66 NWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCA 145 (189)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 145 (189)
....++++++ .+. .+. ..+.+|++|.+.+|..++. +... -.++|++|.+.+|..+. .+ .+
T Consensus 53 ~l~~L~Is~c--~L~-----sLP-~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~-----sL---P~ 112 (426)
T PRK15386 53 ASGRLYIKDC--DIE-----SLP-VLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEIS-----GL---PE 112 (426)
T ss_pred CCCEEEeCCC--CCc-----ccC-CCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCccccc-----cc---cc
Confidence 3456777654 221 121 3466799999999866421 2211 13589999999986553 22 35
Q ss_pred CCCEEecCCCCCCCHHHHHHHHhcCCCCCeeeccc
Q psy9585 146 KLQRLDLASCSFITDQSLKALADGCRNLTHINISW 180 (189)
Q Consensus 146 ~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~ 180 (189)
+|++|++.+ ..... +..+ -++|+.|.+.+
T Consensus 113 sLe~L~L~~-n~~~~--L~~L---PssLk~L~I~~ 141 (426)
T PRK15386 113 SVRSLEIKG-SATDS--IKNV---PNGLTSLSINS 141 (426)
T ss_pred ccceEEeCC-CCCcc--cccC---cchHhheeccc
Confidence 788898875 33321 2222 24678887754
No 77
>KOG3735|consensus
Probab=79.04 E-value=4.9 Score=31.69 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=60.0
Q ss_pred CHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC---CCCCEEecCCCCCCCHHH---HHHHHhcCCCCCeeeccc
Q psy9585 107 TDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC---AKLQRLDLASCSFITDQS---LKALADGCRNLTHINISW 180 (189)
Q Consensus 107 ~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~---~~L~~L~L~~c~~i~~~~---l~~l~~~~~~L~~L~l~~ 180 (189)
.+..++.+...-++++.+++.+..+++...+..+...+ ...+...|.+ +..+|.. +....+.|+.|+.|++.+
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnves 264 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVES 264 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheeccc
Confidence 45677878777889999999998889988888777644 5566677777 4454432 444566789999999999
Q ss_pred CcCcCCCC
Q psy9585 181 CINITENG 188 (189)
Q Consensus 181 c~~lt~~~ 188 (189)
. .||..|
T Consensus 265 n-FItg~g 271 (353)
T KOG3735|consen 265 N-FITGLG 271 (353)
T ss_pred c-ccccHH
Confidence 7 788765
No 78
>KOG1859|consensus
Probab=76.54 E-value=0.93 Score=39.57 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=7.8
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
..+|+.|+++++
T Consensus 253 LksL~~LDlsyN 264 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN 264 (1096)
T ss_pred hhhhhccchhHh
Confidence 456677777665
No 79
>KOG4579|consensus
Probab=74.20 E-value=1.3 Score=30.65 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=31.1
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
+..|++.+. .+++-..+ + ...+.|+.|+++. +.+.. ..+.++. +.+|-.|+..+
T Consensus 79 ~t~lNl~~n-eisdvPeE-~-Aam~aLr~lNl~~-N~l~~-~p~vi~~-L~~l~~Lds~~ 132 (177)
T KOG4579|consen 79 ATTLNLANN-EISDVPEE-L-AAMPALRSLNLRF-NPLNA-EPRVIAP-LIKLDMLDSPE 132 (177)
T ss_pred hhhhhcchh-hhhhchHH-H-hhhHHhhhccccc-Ccccc-chHHHHH-HHhHHHhcCCC
Confidence 667777663 34443333 2 3677888888877 33432 3444444 66666676665
No 80
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=70.77 E-value=3.7 Score=36.38 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=18.6
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
++|+.|+|+++ .++. +....|+|+.|+++++ .++
T Consensus 282 ~~L~~L~Ls~N-~Lt~-----LP~~p~~L~~LdLS~N-~L~ 315 (788)
T PRK15387 282 SGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDN-QLA 315 (788)
T ss_pred hhcCEEECcCC-cccc-----ccccccccceeECCCC-ccc
Confidence 34555555552 2331 2222467888888887 444
No 81
>KOG4308|consensus
Probab=70.66 E-value=2.1 Score=35.68 Aligned_cols=67 Identities=28% Similarity=0.437 Sum_probs=40.8
Q ss_pred CCcceEecccCCCCCHHHHHHHHH---cCCC-CCEEecCCCCCCCHHHHHHHHhcC----CCCCeeecccCcCcCCCC
Q psy9585 119 NNVEDINLNLCKKLTDATSLALSK---HCAK-LQRLDLASCSFITDQSLKALADGC----RNLTHINISWCINITENG 188 (189)
Q Consensus 119 ~~L~~L~l~~~~~i~~~~~~~l~~---~~~~-L~~L~L~~c~~i~~~~l~~l~~~~----~~L~~L~l~~c~~lt~~~ 188 (189)
.+++.|++..| .++...+..+.. ..+. +..|++.. ..+.|.++..+.... ++++++++..| .+++.|
T Consensus 204 ~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~ 278 (478)
T KOG4308|consen 204 SSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKG 278 (478)
T ss_pred ccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-Cccccc
Confidence 35667777775 455555544443 2233 44566665 567777777665544 35588889888 566655
No 82
>PHA02989 ankyrin repeat protein; Provisional
Probab=70.02 E-value=5.3 Score=33.28 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred hhhcCCCCHHHHHHHHhcCChhhhHHHhh
Q psy9585 24 ALINKKLPKELLLRIFSYLDVTSLCRCAQ 52 (189)
Q Consensus 24 ~~~~~~LP~~il~~I~~~L~~~~~~~~~~ 52 (189)
...|..||.|+...|+++|+..|+..+..
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 46799999999999999999999866544
No 83
>KOG3763|consensus
Probab=70.00 E-value=7 Score=32.98 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCC-CC-CHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585 109 NSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCS-FI-TDQSLKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 109 ~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~-~i-~~~~l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
..++.+....|.+..++|++..--.-+++..+.+..|+|.+|+|++-. .+ ++..++.+. .+.|++|-+.|++-.+.
T Consensus 208 ~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 208 AVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELVLEGNPLCTT 285 (585)
T ss_pred HHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCHHHeeecCCccccc
Confidence 455666678889999999884333445777888889999999999831 22 223344443 46689999988865543
No 84
>KOG0617|consensus
Probab=61.14 E-value=1 Score=32.34 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=10.7
Q ss_pred cCCCCCEEecCCCCCCCHH
Q psy9585 143 HCAKLQRLDLASCSFITDQ 161 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~ 161 (189)
.+|.|+.|+|.+ .++.+.
T Consensus 100 s~p~levldlty-nnl~e~ 117 (264)
T KOG0617|consen 100 SFPALEVLDLTY-NNLNEN 117 (264)
T ss_pred CCchhhhhhccc-cccccc
Confidence 456677777766 445443
No 85
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=59.73 E-value=13 Score=32.92 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=16.3
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+|+.|+|++ ..++. +.. .-+++|+.|++++|
T Consensus 262 s~L~~L~Ls~-N~L~~--LP~--~l~~sL~~L~Ls~N 293 (754)
T PRK15370 262 SALQSLDLFH-NKISC--LPE--NLPEELRYLSVYDN 293 (754)
T ss_pred CCCCEEECcC-CccCc--ccc--ccCCCCcEEECCCC
Confidence 3566666664 33431 111 01246777777766
No 86
>KOG0531|consensus
Probab=59.47 E-value=3.7 Score=33.39 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=45.9
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+++.|.+.+.. + ..+..+...+++|+.|++++ ..|+. +..+.. ++.|+.|++.+ ..|++ +..+. .+++|
T Consensus 96 ~l~~l~l~~n~-i--~~i~~~l~~~~~L~~L~ls~-N~I~~--i~~l~~-l~~L~~L~l~~-N~i~~--~~~~~-~l~~L 164 (414)
T KOG0531|consen 96 SLEALDLYDNK-I--EKIENLLSSLVNLQVLDLSF-NKITK--LEGLST-LTLLKELNLSG-NLISD--ISGLE-SLKSL 164 (414)
T ss_pred ceeeeeccccc-h--hhcccchhhhhcchheeccc-ccccc--ccchhh-ccchhhheecc-Ccchh--ccCCc-cchhh
Confidence 36666666532 1 22222244678899999988 55653 333332 56688898888 33543 11111 16778
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
+.++++++.
T Consensus 165 ~~l~l~~n~ 173 (414)
T KOG0531|consen 165 KLLDLSYNR 173 (414)
T ss_pred hcccCCcch
Confidence 888888884
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.64 E-value=12 Score=17.00 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=5.9
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555555
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.64 E-value=12 Score=17.00 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=5.9
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555555
No 89
>KOG4237|consensus
Probab=50.88 E-value=5.3 Score=32.47 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCCccEEeecCC--CCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCC
Q psy9585 81 GPVLENISRRCGGFLRQISLRGC--QSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFI 158 (189)
Q Consensus 81 ~~~l~~l~~~~~~~L~~L~l~~~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i 158 (189)
...+..+....+....++.|... ..+++.++. ..++|+.|+|++ +.|+.-+-.++ +++++|.+|-+.+-..|
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~----~l~~LRrLdLS~-N~Is~I~p~AF-~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFK----TLHRLRRLDLSK-NNISFIAPDAF-KGLASLLSLVLYGNNKI 128 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhcc----chhhhceecccc-cchhhcChHhh-hhhHhhhHHHhhcCCch
Confidence 34444555555655666666542 334444443 567899999988 55654333333 34677777766664667
Q ss_pred CHH
Q psy9585 159 TDQ 161 (189)
Q Consensus 159 ~~~ 161 (189)
++-
T Consensus 129 ~~l 131 (498)
T KOG4237|consen 129 TDL 131 (498)
T ss_pred hhh
Confidence 653
No 90
>KOG0531|consensus
Probab=49.01 E-value=4.3 Score=33.01 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=49.0
Q ss_pred HcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585 90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG 169 (189)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~ 169 (189)
.+. +|+.|++++..--...++. .++.|+.|.+.+. .+++ +..+. .+++|+.++++++. +++..... ...
T Consensus 116 ~~~-~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N-~i~~--~~~~~-~l~~L~~l~l~~n~-i~~ie~~~-~~~ 184 (414)
T KOG0531|consen 116 SLV-NLQVLDLSFNKITKLEGLS----TLTLLKELNLSGN-LISD--ISGLE-SLKSLKLLDLSYNR-IVDIENDE-LSE 184 (414)
T ss_pred hhh-cchheeccccccccccchh----hccchhhheeccC-cchh--ccCCc-cchhhhcccCCcch-hhhhhhhh-hhh
Confidence 344 4999999985322333443 3345888998883 4432 22221 27888889998844 44322211 345
Q ss_pred CCCCCeeecccCc
Q psy9585 170 CRNLTHINISWCI 182 (189)
Q Consensus 170 ~~~L~~L~l~~c~ 182 (189)
+.+|+.+.+.++.
T Consensus 185 ~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 185 LISLEELDLGGNS 197 (414)
T ss_pred ccchHHHhccCCc
Confidence 6778888887764
No 91
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=46.10 E-value=58 Score=18.78 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=3.8
Q ss_pred CCCCCeee
Q psy9585 170 CRNLTHIN 177 (189)
Q Consensus 170 ~~~L~~L~ 177 (189)
.|+|++|.
T Consensus 61 ~~~Le~l~ 68 (70)
T PF07735_consen 61 NPRLEYLE 68 (70)
T ss_pred CcCCcEEE
Confidence 44555444
No 92
>KOG0472|consensus
Probab=45.11 E-value=7.2 Score=31.90 Aligned_cols=12 Identities=42% Similarity=0.481 Sum_probs=5.7
Q ss_pred cCCCCCEEecCC
Q psy9585 143 HCAKLQRLDLAS 154 (189)
Q Consensus 143 ~~~~L~~L~L~~ 154 (189)
++++|.+|+|..
T Consensus 250 ~L~~l~vLDLRd 261 (565)
T KOG0472|consen 250 HLNSLLVLDLRD 261 (565)
T ss_pred ccccceeeeccc
Confidence 344444555544
No 93
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=45.08 E-value=13 Score=24.46 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=19.9
Q ss_pred HHHHHHcCCCcceEeccc--CCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 111 LNILAQYCNNVEDINLNL--CKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 111 l~~l~~~~~~L~~L~l~~--~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
+..+...|+.|+. .+++ ..++ ..+..+...|..| ..+|+.
T Consensus 53 m~~mF~~~~~l~~-dls~w~~s~v--~~~~~mF~~~~~l-~~~l~~ 94 (120)
T PF03382_consen 53 MSGMFAGCSSLNQ-DLSNWDTSNV--TNMSNMFSGCSSL-NQDLSN 94 (120)
T ss_pred HHHHHhhhhhcCC-Cccccccccc--ccHHHHHhhhHHc-CCchhh
Confidence 3445556666665 5543 2222 2345555556666 444543
No 94
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=41.59 E-value=22 Score=22.33 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=16.2
Q ss_pred ccccccccchhhhcCCCCHHHHHHHHhcCChhhhH
Q psy9585 14 VLTRVFLEDEALINKKLPKELLLRIFSYLDVTSLC 48 (189)
Q Consensus 14 ~~~~~~~~~~~~~~~~LP~~il~~I~~~L~~~~~~ 48 (189)
++...+.......+..|+++-+..|++.++..++.
T Consensus 33 vl~~l~~~~~~~il~~l~~~~~a~il~~m~~dd~~ 67 (102)
T PF03448_consen 33 VLEELDPDTQAEILEALSPEEAAEILAEMDSDDAA 67 (102)
T ss_dssp HHCTS-CCCCCHCCCCS-HHHHHHHHCCS-HHHHH
T ss_pred HHHcCCHHHHHHHHHhCCHHHHHHHHHccChHHHH
Confidence 33444444444555555555555555555554443
No 95
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=41.22 E-value=23 Score=28.33 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=5.9
Q ss_pred CCCCCEEecCC
Q psy9585 144 CAKLQRLDLAS 154 (189)
Q Consensus 144 ~~~L~~L~L~~ 154 (189)
+++|+.|++++
T Consensus 162 l~~L~~L~l~~ 172 (394)
T COG4886 162 LPNLKNLDLSF 172 (394)
T ss_pred cccccccccCC
Confidence 45555555555
No 96
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=38.19 E-value=26 Score=16.46 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=10.6
Q ss_pred HHhcCCCCCeeeccc
Q psy9585 166 LADGCRNLTHINISW 180 (189)
Q Consensus 166 l~~~~~~L~~L~l~~ 180 (189)
+...+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 445578888888754
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=35.99 E-value=40 Score=15.74 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=5.7
Q ss_pred CCCCEEecCC
Q psy9585 145 AKLQRLDLAS 154 (189)
Q Consensus 145 ~~L~~L~L~~ 154 (189)
++|+.|+|++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 4556666655
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=31.15 E-value=33 Score=16.13 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=7.2
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
++|+.|+++++
T Consensus 2 ~~L~~L~vs~N 12 (26)
T smart00364 2 PSLKELNVSNN 12 (26)
T ss_pred cccceeecCCC
Confidence 35677777766
No 99
>KOG2502|consensus
Probab=29.72 E-value=37 Score=27.04 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=30.9
Q ss_pred hhcCCCCHHHHHHHHhcCCh--------hhhHHHhhhhHHHHHhh
Q psy9585 25 LINKKLPKELLLRIFSYLDV--------TSLCRCAQVSKAWNILA 61 (189)
Q Consensus 25 ~~~~~LP~~il~~I~~~L~~--------~~~~~~~~v~~~w~~~~ 61 (189)
..|.+||.+.|..|+..... .....++.+|+.|++..
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 57999999999999987642 35578999999999965
No 100
>KOG4408|consensus
Probab=29.03 E-value=13 Score=29.39 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=37.5
Q ss_pred cCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCccee
Q psy9585 27 NKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRI 70 (189)
Q Consensus 27 ~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~ 70 (189)
+..+|++++..+++++..+++.+++.|+++...+...-..|...
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~ 51 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRP 51 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccc
Confidence 56788999999999999999999999999999987665666543
No 101
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=26.23 E-value=50 Score=18.00 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=14.7
Q ss_pred CCCEEecCCCCCCCH--HHHHHHHhcCCCCCeeec
Q psy9585 146 KLQRLDLASCSFITD--QSLKALADGCRNLTHINI 178 (189)
Q Consensus 146 ~L~~L~L~~c~~i~~--~~l~~l~~~~~~L~~L~l 178 (189)
+|+.+.+.+...... +-+..+.++.+.|+.+.|
T Consensus 15 ~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i 49 (51)
T PF08387_consen 15 HLKFVEIKGFRGEENELEFAKYILENAPVLKKMTI 49 (51)
T ss_pred eeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEE
Confidence 455555544322221 124445555555655544
No 102
>KOG1665|consensus
Probab=22.92 E-value=27 Score=26.09 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=10.5
Q ss_pred HHHHHHcCCCcceEecccCCC
Q psy9585 111 LNILAQYCNNVEDINLNLCKK 131 (189)
Q Consensus 111 l~~l~~~~~~L~~L~l~~~~~ 131 (189)
++..--.|.+++-=+|.+|.-
T Consensus 188 L~~v~~lcaN~eGA~L~gcNf 208 (302)
T KOG1665|consen 188 LREVEMLCANAEGASLKGCNF 208 (302)
T ss_pred hhhhhheecccccccccCcCC
Confidence 333333455555555666543
No 103
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=22.45 E-value=76 Score=16.55 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=10.7
Q ss_pred CHHHHHHHHhcCChhhh
Q psy9585 31 PKELLLRIFSYLDVTSL 47 (189)
Q Consensus 31 P~~il~~I~~~L~~~~~ 47 (189)
|-|++.+||..-....+
T Consensus 4 pidiL~rvFP~~kr~~L 20 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVL 20 (39)
T ss_pred HHHHHHHHCCCCChHHH
Confidence 66777777776544333
No 104
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=21.23 E-value=2.1e+02 Score=19.34 Aligned_cols=36 Identities=17% Similarity=0.404 Sum_probs=23.9
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
-.++=+..+|.. +=++..+..+.+.||+|+.+.+-.
T Consensus 15 Ln~nE~~VHlAF--RPSN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 15 LNPNEEIVHLAF--RPSNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred cCCCceEEEEEe--cCcchHHHHHHHhCCCCeEEeCCh
Confidence 345555566654 234456677777899999998864
Done!