Query psy9585
Match_columns 189
No_of_seqs 133 out of 1793
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 23:26:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 4.9E-22 1.7E-26 153.9 17.3 156 24-182 6-206 (336)
2 2p1m_B Transport inhibitor res 99.8 9.4E-21 3.2E-25 156.7 10.2 154 24-186 3-170 (594)
3 3ogk_B Coronatine-insensitive 99.8 2.3E-18 7.9E-23 142.4 9.5 146 28-181 14-174 (592)
4 3e4g_A ATP synthase subunit S, 99.7 1.9E-18 6.4E-23 121.6 4.5 92 94-188 62-156 (176)
5 3e4g_A ATP synthase subunit S, 99.6 7.9E-15 2.7E-19 103.1 7.0 104 66-174 62-170 (176)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 99.4 3.3E-13 1.1E-17 76.4 4.0 49 23-71 5-53 (53)
7 2ast_B S-phase kinase-associat 99.3 1.1E-11 3.7E-16 95.6 12.0 118 65-186 118-237 (336)
8 3ogk_B Coronatine-insensitive 99.3 1.2E-10 3.9E-15 96.3 14.7 103 82-188 426-529 (592)
9 2p1m_B Transport inhibitor res 99.2 8.1E-10 2.8E-14 91.2 14.3 103 79-186 384-495 (594)
10 3un9_A NLR family member X1; l 99.1 7.5E-10 2.6E-14 87.0 11.2 85 65-154 101-192 (372)
11 1io0_A Tropomodulin; LRR prote 99.0 2.6E-08 9E-13 70.6 14.5 127 56-187 27-166 (185)
12 1io0_A Tropomodulin; LRR prote 99.0 1E-08 3.5E-13 72.7 11.2 104 81-188 25-139 (185)
13 3un9_A NLR family member X1; l 98.9 6.6E-09 2.3E-13 81.6 9.6 117 65-187 72-198 (372)
14 2ca6_A RAN GTPase-activating p 98.8 7.2E-08 2.5E-12 75.7 12.8 12 170-181 302-313 (386)
15 1z7x_W Ribonuclease inhibitor; 98.8 3.1E-08 1.1E-12 79.3 10.2 124 57-187 20-157 (461)
16 2ca6_A RAN GTPase-activating p 98.8 2.7E-07 9.3E-12 72.4 14.9 115 65-186 159-288 (386)
17 1z7x_W Ribonuclease inhibitor; 98.7 2.3E-07 7.8E-12 74.2 11.3 152 29-186 14-184 (461)
18 3l2o_B F-box only protein 4; s 98.6 5.4E-09 1.9E-13 78.5 0.5 47 26-72 4-50 (312)
19 1pgv_A TMD-1, tropomodulin TMD 98.6 3.6E-07 1.2E-11 65.2 9.3 126 53-181 29-167 (197)
20 3goz_A Leucine-rich repeat-con 98.6 3.7E-07 1.3E-11 71.1 10.1 18 26-43 33-50 (362)
21 2ra8_A Uncharacterized protein 98.6 7.7E-08 2.6E-12 75.2 5.8 108 78-188 204-323 (362)
22 2e31_A FBS1, F-box only protei 98.5 2.7E-08 9.3E-13 75.2 1.1 46 25-70 49-95 (297)
23 3goz_A Leucine-rich repeat-con 98.5 4.4E-07 1.5E-11 70.7 7.9 119 66-188 52-183 (362)
24 1pgv_A TMD-1, tropomodulin TMD 98.4 3.5E-05 1.2E-09 54.9 15.2 98 81-181 30-136 (197)
25 3v7d_B Cell division control p 98.3 1.1E-07 3.9E-12 75.7 0.4 51 23-73 11-62 (464)
26 1p22_A F-BOX/WD-repeat protein 98.2 2.4E-07 8.2E-12 73.5 0.3 49 23-71 7-59 (435)
27 2ovr_B FBW7, F-BOX/WD repeat p 98.1 5.8E-07 2E-11 71.3 1.8 49 23-71 15-63 (445)
28 2je0_A Acidic leucine-rich nuc 98.1 3.1E-06 1.1E-10 57.3 5.2 80 95-181 44-123 (149)
29 4ezg_A Putative uncharacterize 98.1 1.1E-06 3.9E-11 62.5 2.0 84 95-186 90-173 (197)
30 4ezg_A Putative uncharacterize 98.0 1.8E-06 6.2E-11 61.4 2.7 80 95-182 68-147 (197)
31 2ell_A Acidic leucine-rich nuc 98.0 3.6E-07 1.2E-11 63.3 -1.4 84 95-182 73-158 (168)
32 1wwl_A Monocyte differentiatio 98.0 2.4E-05 8.3E-10 59.5 8.3 89 93-186 149-242 (312)
33 2je0_A Acidic leucine-rich nuc 97.9 1.5E-05 5E-10 53.9 5.5 106 65-180 42-149 (149)
34 4glp_A Monocyte differentiatio 97.8 1.4E-05 4.7E-10 60.8 4.1 89 94-186 146-238 (310)
35 2ell_A Acidic leucine-rich nuc 97.7 1.1E-05 3.6E-10 55.8 2.0 112 63-186 22-134 (168)
36 4fmz_A Internalin; leucine ric 97.7 9.7E-05 3.3E-09 56.7 7.5 77 95-181 245-321 (347)
37 2ra8_A Uncharacterized protein 97.7 0.00017 5.7E-09 56.3 8.8 86 91-182 251-341 (362)
38 1wwl_A Monocyte differentiatio 97.6 6.3E-05 2.2E-09 57.2 4.9 89 94-185 174-266 (312)
39 4fmz_A Internalin; leucine ric 97.5 0.00012 4.2E-09 56.2 5.3 81 94-185 266-346 (347)
40 3rw6_A Nuclear RNA export fact 97.5 0.00018 6.2E-09 53.7 5.8 87 88-179 166-259 (267)
41 4glp_A Monocyte differentiatio 97.4 5.5E-05 1.9E-09 57.5 1.9 89 94-185 170-264 (310)
42 1h6u_A Internalin H; cell adhe 97.2 0.0006 2E-08 51.7 5.7 12 170-181 194-205 (308)
43 2z81_A CD282 antigen, TOLL-lik 97.1 0.0015 5E-08 53.2 7.9 38 117-155 359-397 (549)
44 1h6t_A Internalin B; cell adhe 97.1 0.00099 3.4E-08 50.1 6.1 12 170-181 177-188 (291)
45 4fcg_A Uncharacterized protein 97.1 0.00013 4.4E-09 56.0 1.2 83 95-184 208-290 (328)
46 3v47_A TOLL-like receptor 5B a 97.0 0.00012 4E-09 58.4 0.2 84 94-181 80-164 (455)
47 1a9n_A U2A', U2A'; complex (nu 97.0 0.00012 4E-09 50.9 0.2 83 94-181 65-150 (176)
48 1a9n_A U2A', U2A'; complex (nu 97.0 9.2E-05 3.2E-09 51.5 -0.4 109 63-185 17-126 (176)
49 1m9s_A Internalin B; cell inva 97.0 0.0013 4.4E-08 54.8 6.2 35 143-181 151-185 (605)
50 1o6v_A Internalin A; bacterial 96.9 0.0016 5.6E-08 52.1 6.5 12 170-181 352-363 (466)
51 1ozn_A Reticulon 4 receptor; N 96.9 5.5E-05 1.9E-09 56.6 -2.1 86 94-185 57-142 (285)
52 2wfh_A SLIT homolog 2 protein 96.9 8.3E-05 2.8E-09 52.7 -1.0 83 94-182 55-137 (193)
53 2z81_A CD282 antigen, TOLL-lik 96.9 0.0065 2.2E-07 49.4 10.1 87 94-185 311-400 (549)
54 3v47_A TOLL-like receptor 5B a 96.9 0.00014 4.9E-09 57.8 0.0 113 65-186 30-143 (455)
55 1h6t_A Internalin B; cell adhe 96.9 0.00063 2.2E-08 51.2 3.6 75 95-181 92-166 (291)
56 1h6u_A Internalin H; cell adhe 96.9 0.00099 3.4E-08 50.5 4.7 34 144-181 150-183 (308)
57 2v9t_B SLIT homolog 2 protein 96.9 6.2E-05 2.1E-09 54.4 -2.0 83 94-182 81-163 (220)
58 1m9s_A Internalin B; cell inva 96.9 0.0007 2.4E-08 56.4 4.1 57 117-181 151-207 (605)
59 2z7x_B TOLL-like receptor 1, v 96.9 0.00035 1.2E-08 56.6 2.2 37 117-154 346-383 (520)
60 4fcg_A Uncharacterized protein 96.9 0.00019 6.4E-09 55.1 0.2 36 117-155 125-160 (328)
61 1o6v_A Internalin A; bacterial 96.8 0.0022 7.5E-08 51.4 6.4 12 170-181 374-385 (466)
62 1w8a_A SLIT protein; signaling 96.8 4.3E-05 1.5E-09 54.1 -3.6 83 94-182 55-137 (192)
63 2z7x_B TOLL-like receptor 1, v 96.8 0.00053 1.8E-08 55.6 2.4 36 94-129 349-384 (520)
64 2v70_A SLIT-2, SLIT homolog 2 96.8 8E-05 2.7E-09 53.8 -2.2 83 94-182 82-164 (220)
65 1ds9_A Outer arm dynein; leuci 96.8 0.00011 3.8E-09 52.0 -1.5 78 94-177 94-180 (198)
66 2z66_A Variable lymphocyte rec 96.8 3.9E-05 1.3E-09 58.0 -4.2 61 117-181 173-233 (306)
67 2z80_A TOLL-like receptor 2, v 96.8 0.00019 6.7E-09 55.3 -0.3 86 94-184 77-162 (353)
68 1dce_A Protein (RAB geranylger 96.7 0.00038 1.3E-08 57.5 1.0 80 94-182 464-544 (567)
69 2z62_A TOLL-like receptor 4, v 96.7 7.6E-05 2.6E-09 55.6 -2.9 82 95-181 78-159 (276)
70 1ozn_A Reticulon 4 receptor; N 96.7 0.0002 6.7E-09 53.6 -0.7 62 117-182 175-236 (285)
71 3rfs_A Internalin B, repeat mo 96.7 0.00027 9.1E-09 52.6 -0.2 85 94-185 86-170 (272)
72 1xku_A Decorin; proteoglycan, 96.6 0.00022 7.6E-09 54.4 -0.7 85 94-186 193-277 (330)
73 3rfs_A Internalin B, repeat mo 96.6 0.00013 4.3E-09 54.4 -2.0 85 94-185 110-194 (272)
74 4g8a_A TOLL-like receptor 4; l 96.6 0.00013 4.6E-09 60.1 -2.1 108 64-182 51-159 (635)
75 2v70_A SLIT-2, SLIT homolog 2 96.6 0.0001 3.5E-09 53.2 -2.4 85 94-185 58-142 (220)
76 3m19_A Variable lymphocyte rec 96.6 0.00014 4.6E-09 53.6 -2.0 85 94-185 60-144 (251)
77 2z66_A Variable lymphocyte rec 96.6 4.9E-05 1.7E-09 57.4 -4.5 86 94-185 127-212 (306)
78 2z62_A TOLL-like receptor 4, v 96.6 0.00012 4E-09 54.6 -2.4 85 94-185 53-137 (276)
79 2o6s_A Variable lymphocyte rec 96.6 0.00014 4.7E-09 51.9 -1.9 83 94-182 77-159 (208)
80 3g39_A Variable lymphocyte rec 96.6 0.00015 5.2E-09 50.2 -1.7 84 93-182 30-113 (170)
81 2z63_A TOLL-like receptor 4, v 96.6 5.7E-05 2E-09 61.8 -4.5 12 170-181 517-528 (570)
82 2z80_A TOLL-like receptor 2, v 96.6 0.00019 6.4E-09 55.4 -1.5 84 94-181 101-184 (353)
83 3rgz_A Protein brassinosteroid 96.6 0.00038 1.3E-08 59.4 0.2 60 117-181 198-257 (768)
84 1w8a_A SLIT protein; signaling 96.6 6.8E-05 2.3E-09 53.0 -3.8 61 117-181 52-112 (192)
85 3e6j_A Variable lymphocyte rec 96.6 0.00026 8.9E-09 51.4 -0.8 82 94-182 89-170 (229)
86 1xeu_A Internalin C; cellular 96.6 0.00075 2.6E-08 50.0 1.7 59 119-186 106-164 (263)
87 1xeu_A Internalin C; cellular 96.5 0.00091 3.1E-08 49.6 2.1 77 94-182 107-183 (263)
88 3m19_A Variable lymphocyte rec 96.5 0.00016 5.6E-09 53.1 -2.0 109 65-185 59-168 (251)
89 2id5_A Lingo-1, leucine rich r 96.5 0.00027 9.3E-09 56.7 -1.0 13 117-129 246-258 (477)
90 2o6s_A Variable lymphocyte rec 96.5 0.00018 6E-09 51.3 -2.0 85 94-185 53-137 (208)
91 2o6q_A Variable lymphocyte rec 96.5 0.0002 6.7E-09 53.3 -1.9 64 117-185 131-194 (270)
92 2o6r_A Variable lymphocyte rec 96.5 0.00018 6.3E-09 49.9 -1.9 83 94-182 53-135 (177)
93 1ogq_A PGIP-2, polygalacturona 96.5 4.3E-05 1.5E-09 58.2 -5.7 83 94-181 77-159 (313)
94 2r9u_A Variable lymphocyte rec 96.4 0.00017 5.9E-09 50.2 -2.3 84 93-182 33-116 (174)
95 3o6n_A APL1; leucine-rich repe 96.4 0.00029 1E-08 55.0 -1.2 81 95-181 95-175 (390)
96 4eco_A Uncharacterized protein 96.4 0.0017 5.9E-08 54.2 3.2 86 94-185 250-343 (636)
97 1ogq_A PGIP-2, polygalacturona 96.4 5.1E-05 1.7E-09 57.8 -5.6 88 93-185 50-138 (313)
98 2o6r_A Variable lymphocyte rec 96.4 0.00027 9.2E-09 49.0 -1.5 36 117-154 98-133 (177)
99 2o6q_A Variable lymphocyte rec 96.4 0.00023 7.8E-09 52.9 -2.0 83 94-182 134-216 (270)
100 3e6j_A Variable lymphocyte rec 96.4 0.00021 7.3E-09 51.8 -2.1 84 94-185 65-148 (229)
101 3vq2_A TLR4, TOLL-like recepto 96.3 0.00011 3.7E-09 60.7 -4.4 11 144-154 496-506 (606)
102 2z63_A TOLL-like receptor 4, v 96.3 0.00012 4.2E-09 59.9 -4.1 87 94-186 422-508 (570)
103 4b8c_D Glucose-repressible alc 96.3 0.00044 1.5E-08 58.8 -0.9 106 64-185 223-329 (727)
104 2wfh_A SLIT homolog 2 protein 96.3 0.00022 7.6E-09 50.4 -2.3 81 94-181 32-112 (193)
105 2xwt_C Thyrotropin receptor; s 96.3 4.2E-05 1.4E-09 55.8 -6.4 85 94-184 56-143 (239)
106 3zyj_A Leucine-rich repeat-con 96.3 0.00023 7.8E-09 56.7 -2.6 11 171-181 207-217 (440)
107 2xot_A Amphoterin-induced prot 96.3 0.00022 7.5E-09 55.4 -2.7 86 94-185 89-176 (361)
108 1ds9_A Outer arm dynein; leuci 96.3 0.0078 2.7E-07 42.3 5.6 83 90-182 68-151 (198)
109 3o53_A Protein LRIM1, AGAP0063 96.3 0.0011 3.7E-08 50.4 1.1 12 170-181 119-130 (317)
110 3vq2_A TLR4, TOLL-like recepto 96.3 0.00012 4.2E-09 60.4 -4.5 62 117-181 446-507 (606)
111 1dce_A Protein (RAB geranylger 96.3 0.0015 5E-08 54.0 1.9 81 94-186 442-522 (567)
112 3zyj_A Leucine-rich repeat-con 96.3 0.00026 8.9E-09 56.3 -2.5 37 144-181 159-195 (440)
113 1ziw_A TOLL-like receptor 3; i 96.2 0.00078 2.7E-08 56.4 0.2 110 65-186 25-135 (680)
114 2id5_A Lingo-1, leucine rich r 96.2 0.00026 8.9E-09 56.8 -2.6 82 94-181 57-138 (477)
115 3oja_B Anopheles plasmodium-re 96.2 0.00052 1.8E-08 56.8 -0.8 85 94-185 100-184 (597)
116 3zyi_A Leucine-rich repeat-con 96.2 0.00025 8.7E-09 56.6 -2.7 8 95-102 101-108 (452)
117 3rw6_A Nuclear RNA export fact 96.2 0.0033 1.1E-07 46.8 3.6 67 112-182 163-231 (267)
118 2v9t_B SLIT homolog 2 protein 96.2 0.00028 9.4E-09 51.0 -2.3 85 94-185 57-141 (220)
119 4ecn_A Leucine-rich repeat pro 96.2 0.0033 1.1E-07 54.6 4.0 83 94-181 492-583 (876)
120 3t6q_A CD180 antigen; protein- 96.2 0.00025 8.6E-09 58.5 -3.0 85 94-185 58-142 (606)
121 2ft3_A Biglycan; proteoglycan, 96.2 0.00031 1.1E-08 53.7 -2.4 63 117-185 215-277 (332)
122 3t6q_A CD180 antigen; protein- 96.1 0.00032 1.1E-08 57.9 -2.6 109 65-185 57-166 (606)
123 3zyi_A Leucine-rich repeat-con 96.1 0.00027 9.3E-09 56.4 -2.9 62 117-181 145-206 (452)
124 3o6n_A APL1; leucine-rich repe 96.1 0.00052 1.8E-08 53.6 -1.6 89 89-185 66-154 (390)
125 3rgz_A Protein brassinosteroid 96.0 0.00025 8.7E-09 60.5 -3.7 85 94-181 101-188 (768)
126 3a79_B TLR6, VLRB.59, TOLL-lik 96.0 0.00087 3E-08 55.0 -0.5 12 170-181 472-483 (562)
127 3j0a_A TOLL-like receptor 5; m 96.0 0.0002 6.8E-09 61.8 -4.5 111 64-182 23-134 (844)
128 3a79_B TLR6, VLRB.59, TOLL-lik 96.0 0.001 3.5E-08 54.5 -0.4 10 172-181 451-460 (562)
129 3oja_A Leucine-rich immune mol 95.9 0.00056 1.9E-08 55.3 -2.0 13 169-181 212-224 (487)
130 3oja_B Anopheles plasmodium-re 95.9 0.00058 2E-08 56.6 -1.9 79 94-181 124-202 (597)
131 1p9a_G Platelet glycoprotein I 95.9 0.00045 1.5E-08 52.0 -2.4 61 117-181 122-182 (290)
132 2xot_A Amphoterin-induced prot 95.9 0.00033 1.1E-08 54.4 -3.3 85 94-185 65-149 (361)
133 4b8c_D Glucose-repressible alc 95.9 0.001 3.6E-08 56.5 -0.5 83 93-185 224-306 (727)
134 1ziw_A TOLL-like receptor 3; i 95.9 0.00095 3.3E-08 55.9 -0.8 109 65-185 49-158 (680)
135 4ecn_A Leucine-rich repeat pro 95.9 0.0028 9.4E-08 55.0 1.9 81 94-181 516-605 (876)
136 4g8a_A TOLL-like receptor 4; l 95.9 0.00054 1.8E-08 56.5 -2.5 107 65-181 76-183 (635)
137 3oja_A Leucine-rich immune mol 95.9 0.00077 2.6E-08 54.6 -1.6 60 117-181 142-201 (487)
138 3j0a_A TOLL-like receptor 5; m 95.8 0.00033 1.1E-08 60.4 -3.9 37 144-181 122-158 (844)
139 4eco_A Uncharacterized protein 95.8 0.0032 1.1E-07 52.6 2.1 91 90-185 204-318 (636)
140 1p9a_G Platelet glycoprotein I 95.8 0.00066 2.3E-08 51.1 -2.2 84 94-185 78-161 (290)
141 2xwt_C Thyrotropin receptor; s 95.6 0.00018 6.3E-09 52.3 -5.7 106 65-181 55-166 (239)
142 3bz5_A Internalin-J, INLJ; leu 95.5 0.0082 2.8E-07 48.1 3.4 100 65-186 42-141 (457)
143 3bz5_A Internalin-J, INLJ; leu 95.4 0.0065 2.2E-07 48.7 2.2 99 65-185 64-162 (457)
144 3o53_A Protein LRIM1, AGAP0063 95.4 0.0046 1.6E-07 46.9 1.2 89 82-185 24-112 (317)
145 2r9u_A Variable lymphocyte rec 94.9 0.0035 1.2E-07 43.4 -0.7 62 119-185 33-94 (174)
146 2ifg_A High affinity nerve gro 94.8 0.002 6.7E-08 49.5 -2.3 83 94-182 32-114 (347)
147 3g39_A Variable lymphocyte rec 94.7 0.004 1.4E-07 42.9 -0.7 81 95-185 11-91 (170)
148 2ifg_A High affinity nerve gro 94.6 0.0043 1.5E-07 47.6 -0.8 67 115-185 27-93 (347)
149 3g06_A SSPH2 (leucine-rich rep 94.5 0.018 6.3E-07 48.0 2.6 74 94-182 222-295 (622)
150 2ft3_A Biglycan; proteoglycan, 94.3 0.0024 8.1E-08 48.7 -3.0 83 94-182 218-305 (332)
151 1xku_A Decorin; proteoglycan, 94.1 0.0066 2.3E-07 46.1 -0.7 37 143-181 214-250 (330)
152 3g06_A SSPH2 (leucine-rich rep 93.4 0.046 1.6E-06 45.7 3.0 11 171-181 141-151 (622)
153 3sb4_A Hypothetical leucine ri 92.2 0.017 5.9E-07 43.9 -1.0 91 79-181 213-307 (329)
154 3cvr_A Invasion plasmid antige 91.8 0.048 1.7E-06 45.0 1.2 29 120-154 121-149 (571)
155 1jl5_A Outer protein YOPM; leu 91.7 0.05 1.7E-06 43.5 1.1 33 145-181 173-205 (454)
156 3cvr_A Invasion plasmid antige 91.4 0.043 1.5E-06 45.4 0.4 11 118-128 99-109 (571)
157 1jl5_A Outer protein YOPM; leu 90.9 0.068 2.3E-06 42.7 1.2 12 170-181 236-247 (454)
158 3sb4_A Hypothetical leucine ri 90.4 0.11 3.7E-06 39.4 1.8 80 94-180 203-283 (329)
159 4ay9_X Follicle-stimulating ho 89.5 0.0044 1.5E-07 47.7 -6.7 85 93-181 30-114 (350)
160 4ay9_X Follicle-stimulating ho 70.5 0.21 7.1E-06 38.2 -3.6 64 118-185 29-93 (350)
161 3rfe_A Platelet glycoprotein I 64.5 2 6.9E-05 27.8 0.8 45 119-165 31-75 (130)
162 4gt6_A Cell surface protein; l 63.5 2.7 9.3E-05 32.5 1.5 56 117-180 309-366 (394)
163 4gt6_A Cell surface protein; l 56.6 2.8 9.5E-05 32.4 0.5 11 144-154 356-366 (394)
164 4fdw_A Leucine rich hypothetic 55.1 0.71 2.4E-05 36.2 -3.1 10 172-181 346-355 (401)
165 2kwv_A RAD30 homolog B, DNA po 49.9 11 0.00037 19.6 1.9 26 18-43 12-37 (48)
166 4fs7_A Uncharacterized protein 38.4 3.3 0.00011 32.0 -1.8 56 117-180 318-375 (394)
167 4h09_A Hypothetical leucine ri 29.2 6.4 0.00022 30.0 -1.5 55 117-179 284-341 (379)
168 3kxr_A Magnesium transporter, 23.1 71 0.0024 22.0 3.2 38 12-49 7-44 (205)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.9e-22 Score=153.90 Aligned_cols=156 Identities=30% Similarity=0.472 Sum_probs=99.8
Q ss_pred hhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCC--------------------------
Q psy9585 24 ALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQT-------------------------- 77 (189)
Q Consensus 24 ~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~-------------------------- 77 (189)
...|++||+|++.+||+||+..|+.+++.||++|++++.++..|+.++++....
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~ 85 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP 85 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSC
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccccc
Confidence 456999999999999999999999999999999999998888899988764310
Q ss_pred ------------------CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHH
Q psy9585 78 ------------------DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLA 139 (189)
Q Consensus 78 ------------------~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~ 139 (189)
.+++..+..+...+++ |++|+++++ .+++.....+. .+++|++|++++|..+++.++..
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHH
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHH
Confidence 1122334444445543 666666654 34444444333 35566666666554555555555
Q ss_pred HHHcCCCCCEEecCCCCCCCHHHHHHHHhcCC-CCCeeecccCc
Q psy9585 140 LSKHCAKLQRLDLASCSFITDQSLKALADGCR-NLTHINISWCI 182 (189)
Q Consensus 140 l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~-~L~~L~l~~c~ 182 (189)
+...+++|++|+|++|..+++.++..+...+| +|++|++++|.
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 55555566666666553455555444444455 55555555553
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=9.4e-21 Score=156.69 Aligned_cols=154 Identities=21% Similarity=0.312 Sum_probs=103.7
Q ss_pred hhhcCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecC
Q psy9585 24 ALINKKLPKELLLRIFSYLD-VTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRG 102 (189)
Q Consensus 24 ~~~~~~LP~~il~~I~~~L~-~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~ 102 (189)
.+.|++||+|+|.+||+||+ .+|+.+++.|||+|+++.. ..|..+++..+.... . ..+..+++. |++|.+.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~~-~---~~~~~~~~~-L~~L~L~~ 75 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER--WCRRKVFIGNCYAVS-P---ATVIRRFPK-VRSVELKG 75 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHH--HHCCEEEESSTTSSC-H---HHHHHHCTT-CCEEEEEC
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh--hhceEEeeccccccC-H---HHHHhhCCC-ceEEeccC
Confidence 46799999999999999999 8999999999999999832 446667665543222 1 234455564 77777777
Q ss_pred CCCCC-------------HHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585 103 CQSMT-------------DNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG 169 (189)
Q Consensus 103 ~~~~~-------------~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~ 169 (189)
+..+. ...+..+...+++|++|+|++| .+++..+..+...+++|++|+|.+|..+++.++..+..+
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 154 (594)
T 2p1m_B 76 KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154 (594)
T ss_dssp SCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH
T ss_pred CCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh
Confidence 54322 2234555667777777777775 477777777766677777777777766777777777767
Q ss_pred CCCCCeeecccCcCcCC
Q psy9585 170 CRNLTHINISWCINITE 186 (189)
Q Consensus 170 ~~~L~~L~l~~c~~lt~ 186 (189)
||+|++|++++|. +++
T Consensus 155 ~~~L~~L~L~~~~-i~~ 170 (594)
T 2p1m_B 155 CRNLKELDLRESD-VDD 170 (594)
T ss_dssp CTTCCEEECTTCE-EEC
T ss_pred CCCCCEEeCcCCc-cCC
Confidence 7777777777774 544
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=2.3e-18 Score=142.40 Aligned_cols=146 Identities=17% Similarity=0.291 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHhcC-ChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCC-
Q psy9585 28 KKLPKELLLRIFSYL-DVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQS- 105 (189)
Q Consensus 28 ~~LP~~il~~I~~~L-~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~- 105 (189)
.+||+|+|.+||+|| +.+|+.+++.|||+|+++.. ..++.+.+...... ....+..++++ |++|+++++..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~----~~~~~~~~~~~-L~~L~L~~~~~~ 86 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS--ETREHVTMALCYTA----TPDRLSRRFPN-LRSLKLKGKPRA 86 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH--HHCCEEEESCGGGS----CHHHHHHHCTT-CSEEEEECSCGG
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh--ccccEEEEeecccc----ChHHHHHhCCC-CeEEEecCCcch
Confidence 479999999999999 88999999999999998742 11223332211111 11223333443 55555443221
Q ss_pred ------------CCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCC-CCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585 106 ------------MTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAK-LQRLDLASCSFITDQSLKALADGCRN 172 (189)
Q Consensus 106 ------------~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~-L~~L~L~~c~~i~~~~l~~l~~~~~~ 172 (189)
.....+..+...+++|++|+|++| .+++..+..+...++. |++|+|++|..+++.++..+..+||+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 165 (592)
T 3ogk_B 87 AMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165 (592)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTT
T ss_pred hhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCC
Confidence 112233334444444555554443 3444444444433333 44444444444444444444444444
Q ss_pred CCeeecccC
Q psy9585 173 LTHINISWC 181 (189)
Q Consensus 173 L~~L~l~~c 181 (189)
|++|++++|
T Consensus 166 L~~L~L~~~ 174 (592)
T 3ogk_B 166 IKTLLMEES 174 (592)
T ss_dssp CSEEECTTC
T ss_pred CCEEECccc
Confidence 444444444
No 4
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.73 E-value=1.9e-18 Score=121.59 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=84.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc---CCCCCEEecCCCCCCCHHHHHHHHhcC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH---CAKLQRLDLASCSFITDQSLKALADGC 170 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~L~~c~~i~~~~l~~l~~~~ 170 (189)
+|++|++++|. +++.++..+. .|++|+.|+|++|..++|.++..+... +++|++|+|++|..|||.++..|.. |
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence 49999999985 9999998874 899999999999999999999999872 5789999999999999999999875 9
Q ss_pred CCCCeeecccCcCcCCCC
Q psy9585 171 RNLTHINISWCINITENG 188 (189)
Q Consensus 171 ~~L~~L~l~~c~~lt~~~ 188 (189)
|+|++|+|++|+.||+.|
T Consensus 139 ~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TTCCEEEEESCTTCCCHH
T ss_pred CCCCEEECCCCCCCCchH
Confidence 999999999999999864
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.55 E-value=7.9e-15 Score=103.12 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=89.7
Q ss_pred CcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHc---CCCcceEecccCCCCCHHHHHHHHH
Q psy9585 66 NWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQY---CNNVEDINLNLCKKLTDATSLALSK 142 (189)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~ 142 (189)
.+..+|++++ .+++..+..+ ..++. |++|+|++|..++|.++..+... |++|++|+|++|.++||.++..+..
T Consensus 62 ~L~~LDLs~~--~Itd~GL~~L-~~~~~-L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDS--CIMSIGFDHM-EGLQY-VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESC--CCCGGGGGGG-TTCSC-CCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCC--CccHHHHHHh-cCCCC-CCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 4677888866 4888888887 46775 99999999999999999999853 6799999999999999999999875
Q ss_pred cCCCCCEEecCCCCCCCHHH--HHHHHhcCCCCC
Q psy9585 143 HCAKLQRLDLASCSFITDQS--LKALADGCRNLT 174 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~--l~~l~~~~~~L~ 174 (189)
+++|++|+|++|..|||.+ ...+-...|+++
T Consensus 138 -~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 -FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp -CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred -CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8999999999999999976 556667788876
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.38 E-value=3.3e-13 Score=76.39 Aligned_cols=49 Identities=41% Similarity=0.614 Sum_probs=40.1
Q ss_pred hhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585 23 EALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID 71 (189)
Q Consensus 23 ~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~ 71 (189)
....|..||+|++.+||+||+..|+.+++.|||+|+.++.++.+|+.+|
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 3456899999999999999999999999999999999999989998875
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=1.1e-11 Score=95.63 Aligned_cols=118 Identities=20% Similarity=0.483 Sum_probs=62.6
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC 144 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 144 (189)
..++.+++.+. .+++.....+.. ++ +|++|+++++..+++..+..+...+++|++|++++|..+++.++..+...+
T Consensus 118 ~~L~~L~L~~~--~l~~~~~~~l~~-~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 118 SKLQNLSLEGL--RLSDPIVNTLAK-NS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp CCCSEEECTTC--BCCHHHHHHHTT-CT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred CCCCEEeCcCc--ccCHHHHHHHhc-CC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 44555555433 344444444333 33 266666665545555555555555666666666655455555555555555
Q ss_pred C-CCCEEecCCCC-CCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585 145 A-KLQRLDLASCS-FITDQSLKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 145 ~-~L~~L~L~~c~-~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
+ +|++|+|++|. .+++..+..+...+|+|++|++++|..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 5 66666666554 455555555555556666666665543443
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.27 E-value=1.2e-10 Score=96.27 Aligned_cols=103 Identities=21% Similarity=0.350 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCCccEEeecCCC-CCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCH
Q psy9585 82 PVLENISRRCGGFLRQISLRGCQ-SMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITD 160 (189)
Q Consensus 82 ~~l~~l~~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~ 160 (189)
..+..+...+++ |++|++++|. .+++..+..+...+++|+.|++++| .+++.++..+...+++|++|+|++|. +++
T Consensus 426 ~~~~~~~~~~~~-L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 502 (592)
T 3ogk_B 426 NGVRSLLIGCKK-LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSE 502 (592)
T ss_dssp HHHHHHHHHCTT-CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBH
T ss_pred HHHHHHHHhCCC-CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcH
Confidence 356666666665 8888876543 3778888888878889999999885 58888888888888999999999977 898
Q ss_pred HHHHHHHhcCCCCCeeecccCcCcCCCC
Q psy9585 161 QSLKALADGCRNLTHINISWCINITENG 188 (189)
Q Consensus 161 ~~l~~l~~~~~~L~~L~l~~c~~lt~~~ 188 (189)
.++..++..+|+|++|++++|. +|+.|
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred HHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 8888888889999999999995 88775
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=8.1e-10 Score=91.17 Aligned_cols=103 Identities=19% Similarity=0.334 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHcCCCccEEeec-----CCCCCC----HHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCE
Q psy9585 79 VEGPVLENISRRCGGFLRQISLR-----GCQSMT----DNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQR 149 (189)
Q Consensus 79 ~~~~~l~~l~~~~~~~L~~L~l~-----~~~~~~----~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~ 149 (189)
+++..+..++..+++ |+.|++. +|..++ +.++..+...|++|+.|++++ .+++.++..+...+++|++
T Consensus 384 l~~~~~~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 384 MTNAALITIARNRPN-MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp CCHHHHHHHHHHCTT-CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCE
T ss_pred cCHHHHHHHHhhCCC-cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccE
Confidence 344444444444543 6666665 344555 555655566666666666654 5666666666666777777
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585 150 LDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 150 L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
|+|++|. +++.++..++.+||+|++|++++|. +++
T Consensus 461 L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~-~~~ 495 (594)
T 2p1m_B 461 LSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP-FGD 495 (594)
T ss_dssp EEEESCC-SSHHHHHHHHHHCTTCCEEEEESCS-CCH
T ss_pred eeccCCC-CcHHHHHHHHhcCCCcCEEECcCCC-CcH
Confidence 7777754 7777777776778888888888874 343
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.10 E-value=7.5e-10 Score=86.98 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=38.3
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH----cCCCcceEecccCCCCCHHHHHHH
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ----YCNNVEDINLNLCKKLTDATSLAL 140 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~~~l 140 (189)
..++.++++.. .+++..+..++..... |++|+++++ .+++.+...+.. .+++|++|+|++| .+++.++..+
T Consensus 101 ~~L~~L~Ls~n--~l~~~~~~~l~~~L~~-L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASC--QLDPAGLRTLLPVFLR-ARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTC--CCCHHHHHHTHHHHHT-EEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHH
T ss_pred CCceEEEecCC--CCCHHHHHHHHHHHHh-ccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHH
Confidence 45667777643 4555555554444332 555555553 344444333321 2334444444443 3444333333
Q ss_pred H---HcCCCCCEEecCC
Q psy9585 141 S---KHCAKLQRLDLAS 154 (189)
Q Consensus 141 ~---~~~~~L~~L~L~~ 154 (189)
. ..+++|++|+|++
T Consensus 176 ~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp HHHHHTCSSCCEEECTT
T ss_pred HHHHhcCCCcCEEeCCC
Confidence 2 1234444444444
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.99 E-value=2.6e-08 Score=70.61 Aligned_cols=127 Identities=15% Similarity=0.226 Sum_probs=94.0
Q ss_pred HHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHc--CCCccEEeecCCCCCCHHHHHHHH---HcCCCcceEecccCC
Q psy9585 56 AWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRC--GGFLRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCK 130 (189)
Q Consensus 56 ~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~--~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~ 130 (189)
....+......++.++++.. ..+.+..+..++... ..+|++|+++++ .+++.+...++ ...++|++|+|+++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n-~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 34444455567788888633 167777777776632 235999999996 68888766554 45689999999995
Q ss_pred CCCHHHHHHHHH---cCCCCCEEec--CCCCCCCHHHHHHHHh---cCCCCCeeecccCcCcCCC
Q psy9585 131 KLTDATSLALSK---HCAKLQRLDL--ASCSFITDQSLKALAD---GCRNLTHINISWCINITEN 187 (189)
Q Consensus 131 ~i~~~~~~~l~~---~~~~L~~L~L--~~c~~i~~~~l~~l~~---~~~~L~~L~l~~c~~lt~~ 187 (189)
.+++++...++. ..+.|++|+| ++ ..+++++...|+. .+++|++|++++| .++++
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~ 166 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPR 166 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChH
Confidence 799999888875 4578999999 66 5699998666543 4689999999998 56544
No 12
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=1e-08 Score=72.73 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCC
Q psy9585 81 GPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLAS 154 (189)
Q Consensus 81 ~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~ 154 (189)
...+..+...++. |++|+++++..+++.++..+.. .+++|++|+|+++ .+++++...++. ..++|++|+|++
T Consensus 25 ~~~l~~~l~~~~~-L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPD-LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTT-CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCC-CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3455566666665 9999999965889988776654 5689999999995 799988877765 468999999999
Q ss_pred CCCCCHHHHHHHHhc---CCCCCeeec--ccCcCcCCCC
Q psy9585 155 CSFITDQSLKALADG---CRNLTHINI--SWCINITENG 188 (189)
Q Consensus 155 c~~i~~~~l~~l~~~---~~~L~~L~l--~~c~~lt~~~ 188 (189)
..|++.+...|+.. +++|++|++ +++ .++++|
T Consensus 103 -N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 103 -NFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp -SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred -CcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 45999998887654 578999999 666 677654
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=6.6e-09 Score=81.60 Aligned_cols=117 Identities=15% Similarity=0.253 Sum_probs=92.8
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHH---cCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHH
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRR---CGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~---~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~ 141 (189)
..++.++++.. .+++.....++.. ...+|++|+++++ .+++.++..+...+++|++|+|++| .+++.++..+.
T Consensus 72 ~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTS--CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred hhCCEEEecCC--CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 45678888755 6777666666654 3246999999996 6899999888888889999999996 79998888876
Q ss_pred H----cCCCCCEEecCCCCCCCHHHHHHHH---hcCCCCCeeecccCcCcCCC
Q psy9585 142 K----HCAKLQRLDLASCSFITDQSLKALA---DGCRNLTHINISWCINITEN 187 (189)
Q Consensus 142 ~----~~~~L~~L~L~~c~~i~~~~l~~l~---~~~~~L~~L~l~~c~~lt~~ 187 (189)
. .+++|++|+|++|. +++.+...++ ..+++|++|++++| .+++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~ 198 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDE 198 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHH
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcH
Confidence 4 36899999999964 9988877764 45789999999998 57654
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.82 E-value=7.2e-08 Score=75.69 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=5.7
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+|+|++|++++|
T Consensus 302 l~~L~~L~l~~N 313 (386)
T 2ca6_A 302 MPDLLFLELNGN 313 (386)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCceEEEccCC
Confidence 344444444444
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.80 E-value=3.1e-08 Score=79.25 Aligned_cols=124 Identities=20% Similarity=0.323 Sum_probs=86.3
Q ss_pred HHHhhhCCCCcceeeccCCCCCCCHHHHHHH---HHHcCCCccEEeecCCCCCCHHHHHHHHHcCC----CcceEecccC
Q psy9585 57 WNILALDGSNWSRIDLFNFQTDVEGPVLENI---SRRCGGFLRQISLRGCQSMTDNSLNILAQYCN----NVEDINLNLC 129 (189)
Q Consensus 57 w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l---~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~ 129 (189)
|..++..-..++.++++.. .+++..+..+ ...++. |++|+++++ .+++..+..+...++ +|++|++++|
T Consensus 20 ~~~~~~~~~~L~~L~L~~~--~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPA-LAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHHHHHHHTTCSEEEEESS--CCCHHHHHHHHHHHHTCTT-CCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred HHHHHhhcCCccEEEccCC--CCCHHHHHHHHHHHHhCCC-cCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC
Confidence 4443333356778888755 5666544444 334454 999999985 577877877777776 6999999986
Q ss_pred CCCCHHHH---HHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc----CCCCCeeecccCcCcCCC
Q psy9585 130 KKLTDATS---LALSKHCAKLQRLDLASCSFITDQSLKALADG----CRNLTHINISWCINITEN 187 (189)
Q Consensus 130 ~~i~~~~~---~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~----~~~L~~L~l~~c~~lt~~ 187 (189)
.+++.++ ......+++|++|+|+++. +++.++..+... .++|++|++++| .+++.
T Consensus 96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~ 157 (461)
T 1z7x_W 96 -CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAA 157 (461)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGG
T ss_pred -CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHH
Confidence 5776443 3334568899999999855 888887777654 457999999998 56654
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.78 E-value=2.7e-07 Score=72.38 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=86.1
Q ss_pred CCcceeeccCCCCCCCHHHHHH---HHHHcCCCccEEeecCCCCCCHHHHHHHHH----cCCCcceEecccCCCCCHHHH
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLEN---ISRRCGGFLRQISLRGCQSMTDNSLNILAQ----YCNNVEDINLNLCKKLTDATS 137 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~---l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~ 137 (189)
..++.++++.. .+.+..+.. ....++. |++|.++++ .+++.++..+.. .+++|+.|+|+++ .+++.+.
T Consensus 159 ~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~-L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRN--RLENGSMKEWAKTFQSHRL-LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGS 233 (386)
T ss_dssp CCCCEEECCSS--CCTGGGHHHHHHHHHHCTT-CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHH
T ss_pred CCCcEEECCCC--CCCcHHHHHHHHHHHhCCC-cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHH
Confidence 46788888754 555444554 3346664 999999996 788877655544 7899999999995 6876555
Q ss_pred HHHH---HcCCCCCEEecCCCCCCCHHHHHHHHhc-----CCCCCeeecccCcCcCC
Q psy9585 138 LALS---KHCAKLQRLDLASCSFITDQSLKALADG-----CRNLTHINISWCINITE 186 (189)
Q Consensus 138 ~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~~-----~~~L~~L~l~~c~~lt~ 186 (189)
..+. ..+++|++|+|++|. +++.+...+... +++|++|++++| .+++
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~ 288 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIEL 288 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBH
T ss_pred HHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCH
Confidence 4443 568999999999965 998877666543 799999999999 5664
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.66 E-value=2.3e-07 Score=74.22 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHhcC---ChhhhHHHhhhhH---HHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCC---CccEEe
Q psy9585 29 KLPKELLLRIFSYL---DVTSLCRCAQVSK---AWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGG---FLRQIS 99 (189)
Q Consensus 29 ~LP~~il~~I~~~L---~~~~~~~~~~v~~---~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~---~L~~L~ 99 (189)
.+.++.+..++..+ ...++..+..... .+.........++.+++++. .+.+..+..+...... +|++|+
T Consensus 14 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 14 ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN--ELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC--CCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC--cCChHHHHHHHHHHhhCCCceeEEE
Confidence 35555666655543 3333333332222 22233333466889999754 6777777777776552 499999
Q ss_pred ecCCCCCCHHH---HHHHHHcCCCcceEecccCCCCCHHHHHHHHHc----CCCCCEEecCCCCCCCHHHHHH---HHhc
Q psy9585 100 LRGCQSMTDNS---LNILAQYCNNVEDINLNLCKKLTDATSLALSKH----CAKLQRLDLASCSFITDQSLKA---LADG 169 (189)
Q Consensus 100 l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~L~~L~L~~c~~i~~~~l~~---l~~~ 169 (189)
++++ .+++.+ +......+++|++|+++++ .+++.++..+... .++|++|+|++|. +++.+... ....
T Consensus 92 L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 92 LQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRA 168 (461)
T ss_dssp CTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred ccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhh
Confidence 9997 577643 4444567899999999996 5888888777653 4679999999964 77755433 3445
Q ss_pred CCCCCeeecccCcCcCC
Q psy9585 170 CRNLTHINISWCINITE 186 (189)
Q Consensus 170 ~~~L~~L~l~~c~~lt~ 186 (189)
+++|++|++++|. +++
T Consensus 169 ~~~L~~L~L~~n~-i~~ 184 (461)
T 1z7x_W 169 KPDFKELTVSNND-INE 184 (461)
T ss_dssp CTTCCEEECCSSB-CHH
T ss_pred CCCCCEEECcCCC-cch
Confidence 8999999999984 654
No 18
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.61 E-value=5.4e-09 Score=78.47 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=42.7
Q ss_pred hcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeec
Q psy9585 26 INKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL 72 (189)
Q Consensus 26 ~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l 72 (189)
.++.||+|++.+||+||+++|+.+++.||++|+.++.++.+|+.+-.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 47899999999999999999999999999999999999888877643
No 19
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.58 E-value=3.6e-07 Score=65.18 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=86.3
Q ss_pred hhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHc--CCCccEEeecCCCCCCHHHHHHH---HHcCCCcceEecc
Q psy9585 53 VSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRC--GGFLRQISLRGCQSMTDNSLNIL---AQYCNNVEDINLN 127 (189)
Q Consensus 53 v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~--~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~ 127 (189)
+-.....+......++.+++... ..+.+..+..++... ...|++|+|+++ .++|.+.+.+ ....+.|+.|+|+
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecC
Confidence 33444555555566788887632 266777666665532 224999999885 6888775444 3466789999998
Q ss_pred cCCCCCHHHHHHHHHcC---CCCCEEecCCCC--CCCHHHHHHH---HhcCCCCCeeecccC
Q psy9585 128 LCKKLTDATSLALSKHC---AKLQRLDLASCS--FITDQSLKAL---ADGCRNLTHINISWC 181 (189)
Q Consensus 128 ~~~~i~~~~~~~l~~~~---~~L~~L~L~~c~--~i~~~~l~~l---~~~~~~L~~L~l~~c 181 (189)
+ ..|++++...++..+ +.|++|+|+++. .+++.+-..| ....+.|++|++..+
T Consensus 107 ~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 S-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp S-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred C-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 8 579999988888744 679999998642 5788764444 344678999988765
No 20
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.58 E-value=3.7e-07 Score=71.11 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=10.7
Q ss_pred hcCCCCHHHHHHHHhcCC
Q psy9585 26 INKKLPKELLLRIFSYLD 43 (189)
Q Consensus 26 ~~~~LP~~il~~I~~~L~ 43 (189)
.+.+.+...+...|..++
T Consensus 33 ~l~~~~~~~l~~~l~~~~ 50 (362)
T 3goz_A 33 NLYSISTVELIQAFANTP 50 (362)
T ss_dssp CGGGSCHHHHHHHHHTCC
T ss_pred CCChHHHHHHHHHHHhCC
Confidence 356666666666666443
No 21
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=7.7e-08 Score=75.24 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHcCCCccEEeecCCCC--CCH---HHHHHHH--HcCCCcceEecccCCCCCHHHHHHHHH--cCCCCC
Q psy9585 78 DVEGPVLENISRRCGGFLRQISLRGCQS--MTD---NSLNILA--QYCNNVEDINLNLCKKLTDATSLALSK--HCAKLQ 148 (189)
Q Consensus 78 ~~~~~~l~~l~~~~~~~L~~L~l~~~~~--~~~---~~l~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~L~ 148 (189)
.+++..+..++....++|++|+|..... ..+ ..+..+. ..+|+|+.|.|.+| .+++.....++. .+|+|+
T Consensus 204 ~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~ 282 (362)
T 2ra8_A 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLE 282 (362)
T ss_dssp BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCS
T ss_pred CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCC
Confidence 4667777777764333599998853111 111 1222222 25789999999886 577666666664 578999
Q ss_pred EEecCCCCCCCHHHHHHHHh---cCCCCCeeecccCcCcCCCC
Q psy9585 149 RLDLASCSFITDQSLKALAD---GCRNLTHINISWCINITENG 188 (189)
Q Consensus 149 ~L~L~~c~~i~~~~l~~l~~---~~~~L~~L~l~~c~~lt~~~ 188 (189)
+|+|++ ..+++.+...+.. .+++|+.|++++| .++++|
T Consensus 283 ~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~ 323 (362)
T 2ra8_A 283 TMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEM 323 (362)
T ss_dssp EEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHH
T ss_pred EEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHH
Confidence 999987 6699998888764 4789999999988 587653
No 22
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.48 E-value=2.7e-08 Score=75.20 Aligned_cols=46 Identities=30% Similarity=0.469 Sum_probs=42.1
Q ss_pred hhcCCCCHHHHHHHHhcCChhhhH-HHhhhhHHHHHhhhCCCCccee
Q psy9585 25 LINKKLPKELLLRIFSYLDVTSLC-RCAQVSKAWNILALDGSNWSRI 70 (189)
Q Consensus 25 ~~~~~LP~~il~~I~~~L~~~~~~-~~~~v~~~w~~~~~~~~~~~~~ 70 (189)
..+..||+|++..||++|+..+++ +|+.|||+|+.++.++.+|+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 467899999999999999999999 9999999999999888777765
No 23
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.47 E-value=4.4e-07 Score=70.69 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=77.4
Q ss_pred CcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCH---HHHHHHHHcC-CCcceEecccCCCCCHHHHHHH
Q psy9585 66 NWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTD---NSLNILAQYC-NNVEDINLNLCKKLTDATSLAL 140 (189)
Q Consensus 66 ~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~---~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l 140 (189)
.++.++++...- ......+..+......+|++|+++++. +++ ..+......+ ++|++|+++++ .+++.....+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 129 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEF 129 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHH
Confidence 678888876531 122344444444543459999999864 443 3344444455 79999999995 5666555555
Q ss_pred HH---c-CCCCCEEecCCCCCCCHHHHHHHH---hcCC-CCCeeecccCcCcCCCC
Q psy9585 141 SK---H-CAKLQRLDLASCSFITDQSLKALA---DGCR-NLTHINISWCINITENG 188 (189)
Q Consensus 141 ~~---~-~~~L~~L~L~~c~~i~~~~l~~l~---~~~~-~L~~L~l~~c~~lt~~~ 188 (189)
.. . +++|++|+|++| .+++.+...+. ...+ +|++|++++| .+++.|
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~ 183 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKN 183 (362)
T ss_dssp HHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSC
T ss_pred HHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhh
Confidence 44 2 469999999995 47765544443 3344 8999999999 676654
No 24
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.38 E-value=3.5e-05 Score=54.89 Aligned_cols=98 Identities=13% Similarity=0.287 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCC
Q psy9585 81 GPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLAS 154 (189)
Q Consensus 81 ~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~ 154 (189)
+..+..+...... |++|++++...+++++.+.++. ....|+.|+|++| .+++.+...|+. ..+.|++|+|++
T Consensus 30 ~~~l~~ll~~n~~-L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 30 ESCINRLREDDTD-LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHTTCSS-CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCC-ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 3456666666554 9999998755788887766654 4557999999985 788888777664 458899999998
Q ss_pred CCCCCHHHHHHHHhcC---CCCCeeecccC
Q psy9585 155 CSFITDQSLKALADGC---RNLTHINISWC 181 (189)
Q Consensus 155 c~~i~~~~l~~l~~~~---~~L~~L~l~~c 181 (189)
..|++.+...|+..+ ..|++|+|+++
T Consensus 108 -N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 108 -NFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp -SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred -CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 669999988887765 46999999876
No 25
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.28 E-value=1.1e-07 Score=75.69 Aligned_cols=51 Identities=27% Similarity=0.511 Sum_probs=45.6
Q ss_pred hhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhC-CCCcceeecc
Q psy9585 23 EALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALD-GSNWSRIDLF 73 (189)
Q Consensus 23 ~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~-~~~~~~~~l~ 73 (189)
..+.+..||+|++.+||+||+..++.++++||++|++++.+ +.+|+.+.+.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~ 62 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS 62 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 35778999999999999999999999999999999999887 7888887653
No 26
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.18 E-value=2.4e-07 Score=73.50 Aligned_cols=49 Identities=33% Similarity=0.592 Sum_probs=44.7
Q ss_pred hhhhcCCCCHH----HHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585 23 EALINKKLPKE----LLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID 71 (189)
Q Consensus 23 ~~~~~~~LP~~----il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~ 71 (189)
..+.+..||+| ++.+||+||+..++.++++|||+|+.++.++.+|+.+-
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 35778999999 99999999999999999999999999998888898763
No 27
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.14 E-value=5.8e-07 Score=71.35 Aligned_cols=49 Identities=35% Similarity=0.518 Sum_probs=44.2
Q ss_pred hhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585 23 EALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID 71 (189)
Q Consensus 23 ~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~ 71 (189)
..+.+..||+|++.+||+||+..++.++++||++|+.++.++.+|+.+-
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 4677999999999999999999999999999999999988877787654
No 28
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.14 E-value=3.1e-06 Score=57.33 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=41.2
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|+.|+++++ .++.. .....+++|+.|+++++ .++.. +......+++|++|+++++. +++.........+++|+
T Consensus 44 L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 44 LEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCC
T ss_pred CcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCC
Confidence 666666664 23222 22235566666666664 34321 33333446666666666633 55432222233466666
Q ss_pred eeecccC
Q psy9585 175 HINISWC 181 (189)
Q Consensus 175 ~L~l~~c 181 (189)
+|++++|
T Consensus 117 ~L~l~~N 123 (149)
T 2je0_A 117 SLDLFNC 123 (149)
T ss_dssp EEECTTC
T ss_pred EEeCcCC
Confidence 6666666
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.08 E-value=1.1e-06 Score=62.49 Aligned_cols=84 Identities=17% Similarity=0.257 Sum_probs=47.7
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|++|.++++ .+++.....+ ..+++|+.|+++++ .+++.....+. .+++|++|+|++|..+++- .. ...+++|+
T Consensus 90 L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~~-l~~l~~L~ 162 (197)
T 4ezg_A 90 LERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDI--MP-LKTLPELK 162 (197)
T ss_dssp CCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCC--GG-GGGCSSCC
T ss_pred CCEEEeECC-ccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCcccc--Hh-hcCCCCCC
Confidence 666666663 3333222222 25667777777774 45554444443 4677777777775535442 12 34467777
Q ss_pred eeecccCcCcCC
Q psy9585 175 HINISWCINITE 186 (189)
Q Consensus 175 ~L~l~~c~~lt~ 186 (189)
+|++++| .+++
T Consensus 163 ~L~l~~n-~i~~ 173 (197)
T 4ezg_A 163 SLNIQFD-GVHD 173 (197)
T ss_dssp EEECTTB-CCCC
T ss_pred EEECCCC-CCcC
Confidence 7777777 3443
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.05 E-value=1.8e-06 Score=61.41 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=38.0
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|++|.++++ .+++.. ....+++|++|+++++ .+++.....+. .+++|++|+|+++ .+++.....+. .+++|+
T Consensus 68 L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~ 139 (197)
T 4ezg_A 68 IKDLTINNI-HATNYN---PISGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVN 139 (197)
T ss_dssp CSEEEEESC-CCSCCG---GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCC
T ss_pred CCEEEccCC-CCCcch---hhhcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCC
Confidence 666666554 222211 1224556666666553 34432222222 3556666666653 35444444433 255666
Q ss_pred eeecccCc
Q psy9585 175 HINISWCI 182 (189)
Q Consensus 175 ~L~l~~c~ 182 (189)
+|++++|.
T Consensus 140 ~L~L~~n~ 147 (197)
T 4ezg_A 140 SIDLSYNG 147 (197)
T ss_dssp EEECCSCT
T ss_pred EEEccCCC
Confidence 66666653
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.02 E-value=3.6e-07 Score=63.29 Aligned_cols=84 Identities=25% Similarity=0.287 Sum_probs=43.9
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHH--HHHHhcCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSL--KALADGCRN 172 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l--~~l~~~~~~ 172 (189)
|+.|+++++. ++.. +..+...+++|+.|+++++ .+++-........+++|++|+|+++. ++.... ......+|+
T Consensus 73 L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 73 LKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSS
T ss_pred CCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCcc
Confidence 6666666643 2221 2333435677777777764 44431111123346777777777743 432211 123445777
Q ss_pred CCeeecccCc
Q psy9585 173 LTHINISWCI 182 (189)
Q Consensus 173 L~~L~l~~c~ 182 (189)
|++|++++|.
T Consensus 149 L~~L~l~~n~ 158 (168)
T 2ell_A 149 LTYLDGYDRE 158 (168)
T ss_dssp CCEETTEETT
T ss_pred CcEecCCCCC
Confidence 7777777763
No 32
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.00 E-value=2.4e-05 Score=59.52 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=51.0
Q ss_pred CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHH-HHH-HH-HHcCCCCCEEecCCCCCCCH--HHHHHHH
Q psy9585 93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDA-TSL-AL-SKHCAKLQRLDLASCSFITD--QSLKALA 167 (189)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~-~~~-~l-~~~~~~L~~L~L~~c~~i~~--~~l~~l~ 167 (189)
.+|++|+++++. ++..... ....+++|+.|+++++ .+... .+. .+ ...+++|++|+|+++. ++. .....+.
T Consensus 149 ~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQAH-SLNFSCE-QVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEESCS-CCCCCTT-TCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHH
T ss_pred CCCcEEEeeCCC-CccchHH-HhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHH
Confidence 457788777752 2221111 1225678888888875 33332 221 22 1457888888888854 552 2233455
Q ss_pred hcCCCCCeeecccCcCcCC
Q psy9585 168 DGCRNLTHINISWCINITE 186 (189)
Q Consensus 168 ~~~~~L~~L~l~~c~~lt~ 186 (189)
..+++|++|+++++ .+++
T Consensus 225 ~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 225 AARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp HTTCCCSEEECTTS-CCCS
T ss_pred hcCCCCCEEECCCC-cCCc
Confidence 56788888888887 4544
No 33
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.94 E-value=1.5e-05 Score=53.93 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=68.1
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC 144 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 144 (189)
..++.++++.. .+... ......+ +|+.|+++++. ++.. +......+++|+.|+++++ .+++-........+
T Consensus 42 ~~L~~L~l~~n--~l~~~---~~~~~l~-~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l 112 (149)
T 2je0_A 42 EELEFLSTINV--GLTSI---ANLPKLN-KLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL 112 (149)
T ss_dssp TTCCEEECTTS--CCCCC---TTCCCCT-TCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred CCCcEEECcCC--CCCCc---hhhhcCC-CCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence 34566666544 23221 1112234 59999999964 4332 3445557999999999995 57654332335569
Q ss_pred CCCCEEecCCCCCCCHHHH--HHHHhcCCCCCeeeccc
Q psy9585 145 AKLQRLDLASCSFITDQSL--KALADGCRNLTHINISW 180 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l--~~l~~~~~~L~~L~l~~ 180 (189)
++|++|+++++. +++... ......+|+|++|++++
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999964 654332 23455699999999874
No 34
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.82 E-value=1.4e-05 Score=60.81 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=50.6
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHH--HHcCCCCCEEecCCCCCCC--HHHHHHHHhc
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLAL--SKHCAKLQRLDLASCSFIT--DQSLKALADG 169 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~L~~c~~i~--~~~l~~l~~~ 169 (189)
+|++|+++++. ++.... .....+++|++|+|+++...++.++... ...+++|++|+|++|. ++ ......+...
T Consensus 146 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 146 GLKVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp CCCEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred CCCEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 48888888753 222111 1123567788888887532222222211 1357788888888854 55 2233334556
Q ss_pred CCCCCeeecccCcCcCC
Q psy9585 170 CRNLTHINISWCINITE 186 (189)
Q Consensus 170 ~~~L~~L~l~~c~~lt~ 186 (189)
+++|++|+++++ .+++
T Consensus 223 l~~L~~L~Ls~N-~l~~ 238 (310)
T 4glp_A 223 GVQPHSLDLSHN-SLRA 238 (310)
T ss_dssp TCCCSSEECTTS-CCCC
T ss_pred CCCCCEEECCCC-CCCc
Confidence 788888888877 3443
No 35
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.73 E-value=1.1e-05 Score=55.76 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585 63 DGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142 (189)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 142 (189)
.+..++.+++.+.. +.+..+......++ +|+.|+++++. ++.. .....+++|+.|+++++ .++.. +..+..
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~~~~~~l~-~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIEGLTAEFV-NLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAE 92 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCSSCCGGGG-GCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHH
T ss_pred CcccCCEEECCCCC--CChhhHHHHHHhCC-CCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHh
Confidence 34667888887653 22111122223445 49999999974 4433 33447889999999996 45542 445555
Q ss_pred cCCCCCEEecCCCCCCCHHH-HHHHHhcCCCCCeeecccCcCcCC
Q psy9585 143 HCAKLQRLDLASCSFITDQS-LKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~-l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
.+++|++|+|+++ .+++.. +.. ...+++|++|++++| .++.
T Consensus 93 ~l~~L~~L~Ls~N-~l~~~~~~~~-l~~l~~L~~L~l~~N-~l~~ 134 (168)
T 2ell_A 93 KLPNLTHLNLSGN-KLKDISTLEP-LKKLECLKSLDLFNC-EVTN 134 (168)
T ss_dssp HCTTCCEEECBSS-SCCSSGGGGG-GSSCSCCCEEECCSS-GGGT
T ss_pred hCCCCCEEeccCC-ccCcchhHHH-HhcCCCCCEEEeeCC-cCcc
Confidence 6999999999996 466532 233 345899999999998 4544
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.72 E-value=9.7e-05 Score=56.73 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=41.3
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|++|+++++. +++. . ....+++|+.|++++| .+++- .. ...+++|++|+|++|. +++.....+.. +++|+
T Consensus 245 L~~L~l~~n~-l~~~--~-~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~ 314 (347)
T 4fmz_A 245 LTWLEIGTNQ-ISDI--N-AVKDLTKLKMLNVGSN-QISDI--SV-LNNLSQLNSLFLNNNQ-LGNEDMEVIGG-LTNLT 314 (347)
T ss_dssp CCEEECCSSC-CCCC--G-GGTTCTTCCEEECCSS-CCCCC--GG-GGGCTTCSEEECCSSC-CCGGGHHHHHT-CTTCS
T ss_pred CCEEECCCCc-cCCC--h-hHhcCCCcCEEEccCC-ccCCC--hh-hcCCCCCCEEECcCCc-CCCcChhHhhc-cccCC
Confidence 6666666542 2221 1 1235566666666664 34331 11 3346677777777643 55444444443 66777
Q ss_pred eeecccC
Q psy9585 175 HINISWC 181 (189)
Q Consensus 175 ~L~l~~c 181 (189)
+|++++|
T Consensus 315 ~L~L~~n 321 (347)
T 4fmz_A 315 TLFLSQN 321 (347)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 7777766
No 37
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=0.00017 Score=56.33 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=67.2
Q ss_pred cCCCccEEeecCCCCCCHHHHHHHHH--cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCCCCCCCHHHHHH
Q psy9585 91 CGGFLRQISLRGCQSMTDNSLNILAQ--YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLASCSFITDQSLKA 165 (189)
Q Consensus 91 ~~~~L~~L~l~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~c~~i~~~~l~~ 165 (189)
++ +|+.|.+.+| .+++.....+.. .+++|++|+|+. ..+++.+...+.. .+++|++|+|++| .+++.++..
T Consensus 251 ~p-~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~ 326 (362)
T 2ra8_A 251 FP-NLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKE 326 (362)
T ss_dssp CT-TCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHH
T ss_pred CC-CcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHH
Confidence 44 5999999986 566666555553 578999999987 5799988877763 4799999999986 599999999
Q ss_pred HHhcCCCCCeeecccCc
Q psy9585 166 LADGCRNLTHINISWCI 182 (189)
Q Consensus 166 l~~~~~~L~~L~l~~c~ 182 (189)
|...+ ...+++++..
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 98755 4567777653
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.60 E-value=6.3e-05 Score=57.19 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=57.7
Q ss_pred CccEEeecCCCCCCHHHHHHHH--HcCCCcceEecccCCCCCH--HHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585 94 FLRQISLRGCQSMTDNSLNILA--QYCNNVEDINLNLCKKLTD--ATSLALSKHCAKLQRLDLASCSFITDQSLKALADG 169 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~--~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~ 169 (189)
+|+.|+++++...+...+..-. ..+++|++|+++++ .++. .....+...+++|++|+|+++. +++.........
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~ 251 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDW 251 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhh
Confidence 5999999986433333332222 57889999999995 5662 3344555678999999999843 554221112233
Q ss_pred CCCCCeeecccCcCcC
Q psy9585 170 CRNLTHINISWCINIT 185 (189)
Q Consensus 170 ~~~L~~L~l~~c~~lt 185 (189)
+++|++|++++| .++
T Consensus 252 l~~L~~L~Ls~N-~l~ 266 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLK 266 (312)
T ss_dssp CTTCCEEECTTS-CCS
T ss_pred cCCCCEEECCCC-ccC
Confidence 578999999888 454
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.51 E-value=0.00012 Score=56.18 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=59.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++ .+++. . ....+++|+.|++++| .+++.....+. .+++|++|+|++|. +++... ...+++|
T Consensus 266 ~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~---~~~l~~L 335 (347)
T 4fmz_A 266 KLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNH-ITDIRP---LASLSKM 335 (347)
T ss_dssp TCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSS-CCCCGG---GGGCTTC
T ss_pred CcCEEEccCC-ccCCC--h-hhcCCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCc-cccccC---hhhhhcc
Confidence 5999999997 44432 2 2458899999999996 57665555554 48999999999966 554222 4559999
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|++++| .++
T Consensus 336 ~~L~l~~N-~i~ 346 (347)
T 4fmz_A 336 DSADFANQ-VIK 346 (347)
T ss_dssp SEESSSCC----
T ss_pred ceeehhhh-ccc
Confidence 99999999 454
No 40
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=0.00018 Score=53.74 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=58.4
Q ss_pred HHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHH-HHHHHHHcCCCCCEEecCCCCCCCH------
Q psy9585 88 SRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDA-TSLALSKHCAKLQRLDLASCSFITD------ 160 (189)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~L~~c~~i~~------ 160 (189)
....+. |++|+|++...-.-..+..+...+++|+.|+|++ +.+++- .+..+. .+ +|++|+|.+. .++.
T Consensus 166 ~~~l~~-L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~ 240 (267)
T 3rw6_A 166 EENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQS 240 (267)
T ss_dssp HHHCTT-CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHH
T ss_pred HhhCCC-CCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCC-cCccccCcch
Confidence 345564 9999999964333334445556899999999998 566643 333322 23 9999999994 4553
Q ss_pred HHHHHHHhcCCCCCeeecc
Q psy9585 161 QSLKALADGCRNLTHINIS 179 (189)
Q Consensus 161 ~~l~~l~~~~~~L~~L~l~ 179 (189)
.....+...+|+|+.|+=.
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 3344566779999999744
No 41
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.37 E-value=5.5e-05 Score=57.46 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=54.0
Q ss_pred CccEEeecCCCCCCHHHHHHH--HHcCCCcceEecccCCCCC--HHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHh-
Q psy9585 94 FLRQISLRGCQSMTDNSLNIL--AQYCNNVEDINLNLCKKLT--DATSLALSKHCAKLQRLDLASCSFITDQSLKALAD- 168 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~- 168 (189)
+|++|+++++...++..+... ...+++|++|++++| .++ ......+...+++|++|+|+++. +++.....+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhc
Confidence 599999998644444443221 246788999999986 565 23333345568899999998843 54321111111
Q ss_pred -cCCCCCeeecccCcCcC
Q psy9585 169 -GCRNLTHINISWCINIT 185 (189)
Q Consensus 169 -~~~~L~~L~l~~c~~lt 185 (189)
..++|++|++++| .++
T Consensus 248 ~~~~~L~~L~Ls~N-~l~ 264 (310)
T 4glp_A 248 MWSSALNSLNLSFA-GLE 264 (310)
T ss_dssp CCCTTCCCEECCSS-CCC
T ss_pred cCcCcCCEEECCCC-CCC
Confidence 1267888888777 444
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.17 E-value=0.0006 Score=51.73 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=5.4
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|++|++++|
T Consensus 194 l~~L~~L~L~~N 205 (308)
T 1h6u_A 194 LPNLIEVHLKNN 205 (308)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEEccCC
Confidence 444444444444
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.12 E-value=0.0015 Score=53.25 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=17.1
Q ss_pred cCCCcceEecccCCCCCHHH-HHHHHHcCCCCCEEecCCC
Q psy9585 117 YCNNVEDINLNLCKKLTDAT-SLALSKHCAKLQRLDLASC 155 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~L~~L~L~~c 155 (189)
.+++|+.|+++++ .++.-. .......+++|++|+|+++
T Consensus 359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC
Confidence 4455555555553 333211 1122334555555555553
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.09 E-value=0.00099 Score=50.11 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=5.7
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|++|++++|
T Consensus 177 l~~L~~L~L~~N 188 (291)
T 1h6t_A 177 LTKLQNLYLSKN 188 (291)
T ss_dssp CTTCCEEECCSS
T ss_pred CCccCEEECCCC
Confidence 444444444444
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.08 E-value=0.00013 Score=55.99 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=41.4
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|++|+++++. ++. +......+++|++|++++|..... +......+++|++|+|++|..++. .... ...+++|+
T Consensus 208 L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-~p~~-~~~l~~L~ 280 (328)
T 4fcg_A 208 LKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-LPLD-IHRLTQLE 280 (328)
T ss_dssp CCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-CCTT-GGGCTTCC
T ss_pred CCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-cchh-hhcCCCCC
Confidence 6666665542 221 111133566666666666532221 111123466777777776543321 1111 23477788
Q ss_pred eeecccCcCc
Q psy9585 175 HINISWCINI 184 (189)
Q Consensus 175 ~L~l~~c~~l 184 (189)
+|++++|..+
T Consensus 281 ~L~L~~n~~~ 290 (328)
T 4fcg_A 281 KLDLRGCVNL 290 (328)
T ss_dssp EEECTTCTTC
T ss_pred EEeCCCCCch
Confidence 8888777543
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.00 E-value=0.00012 Score=58.36 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=51.3
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHH-HHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLA-LSKHCAKLQRLDLASCSFITDQSLKALADGCRN 172 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~-l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~ 172 (189)
+|++|+++++. ++..... ....+++|++|++++| .++...... ....+++|++|+|+++. ++......+...+++
T Consensus 80 ~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 80 SLIILKLDYNQ-FLQLETG-AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRR 155 (455)
T ss_dssp TCCEEECTTCT-TCEECTT-TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTT
T ss_pred cCCEEeCCCCc-cCccChh-hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCc
Confidence 48888888753 3322111 2236778888888885 465433322 13357888888888843 543322333455788
Q ss_pred CCeeecccC
Q psy9585 173 LTHINISWC 181 (189)
Q Consensus 173 L~~L~l~~c 181 (189)
|++|++++|
T Consensus 156 L~~L~L~~n 164 (455)
T 3v47_A 156 FHVLDLTFN 164 (455)
T ss_dssp CCEEECTTC
T ss_pred ccEEeCCCC
Confidence 888888887
No 47
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.00 E-value=0.00012 Score=50.91 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=41.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHH-HHHHHHcCCCCCEEecCCCCCCCHHH--HHHHHhcC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDAT-SLALSKHCAKLQRLDLASCSFITDQS--LKALADGC 170 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~L~~L~L~~c~~i~~~~--l~~l~~~~ 170 (189)
+|+.|+++++ .++... ..+...+++|+.|+++++ .+++-. +.. ...+++|++|+++++. ++... -..+...+
T Consensus 65 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 65 RLKTLLVNNN-RICRIG-EGLDQALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKV 139 (176)
T ss_dssp SCCEEECCSS-CCCEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHC
T ss_pred CCCEEECCCC-cccccC-cchhhcCCCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHC
Confidence 3666666664 232111 112235667777777764 343211 112 2346777777777643 33211 11123446
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
|+|+.|+++++
T Consensus 140 ~~L~~Ld~~~n 150 (176)
T 1a9n_A 140 PQVRVLDFQKV 150 (176)
T ss_dssp TTCSEETTEEC
T ss_pred CccceeCCCcC
Confidence 77777777665
No 48
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.99 E-value=9.2e-05 Score=51.46 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585 63 DGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142 (189)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 142 (189)
.+..++.+++.+.. ++. +..+... .++|+.|+++++ .++.. . ....+++|+.|+++++ .++.- ...+..
T Consensus 17 ~~~~L~~L~l~~n~--l~~--i~~~~~~-~~~L~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYK--IPV--IENLGAT-LDQFDAIDFSDN-EIRKL--D-GFPLLRRLKTLLVNNN-RICRI-GEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSC--CCS--CCCGGGG-TTCCSEEECCSS-CCCEE--C-CCCCCSSCCEEECCSS-CCCEE-CSCHHH
T ss_pred CcCCceEEEeeCCC--Cch--hHHhhhc-CCCCCEEECCCC-CCCcc--c-ccccCCCCCEEECCCC-ccccc-Ccchhh
Confidence 34567788877543 221 1223232 324999999996 44432 2 2347889999999995 56531 112334
Q ss_pred cCCCCCEEecCCCCCCCHHH-HHHHHhcCCCCCeeecccCcCcC
Q psy9585 143 HCAKLQRLDLASCSFITDQS-LKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~-l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
.+++|++|+|+++ .+++-. +..+ ..+++|++|++++|+ ++
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N~-i~ 126 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRNP-VT 126 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSSG-GG
T ss_pred cCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCCC-CC
Confidence 5899999999995 465422 2233 358999999999984 44
No 49
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.97 E-value=0.0013 Score=54.76 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=16.2
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|+.|+|++|. +++... ...+++|++|+|++|
T Consensus 151 ~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN 185 (605)
T ss_dssp SCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSS
T ss_pred ccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCC
Confidence 34555555555532 322111 233555666665555
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.94 E-value=0.0016 Score=52.11 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=5.8
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|+.|++++|
T Consensus 352 l~~L~~L~l~~n 363 (466)
T 1o6v_A 352 LTNINWLSAGHN 363 (466)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEeCCCC
Confidence 444455555444
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=96.94 E-value=5.5e-05 Score=56.64 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=53.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++..... ....+++|++|+++++..++.-.... ...+++|++|+|+++. ++..... ....+++|
T Consensus 57 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L 131 (285)
T 1ozn_A 57 NLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCG-LQELGPG-LFRGLAAL 131 (285)
T ss_dssp TCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCTT-TTTTCTTC
T ss_pred CCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCc-CCEECHh-HhhCCcCC
Confidence 4899998875 34322111 22367889999998864344321122 3357899999999854 5432222 23457899
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 132 ~~L~l~~n-~l~ 142 (285)
T 1ozn_A 132 QYLYLQDN-ALQ 142 (285)
T ss_dssp CEEECCSS-CCC
T ss_pred CEEECCCC-ccc
Confidence 99999988 444
No 52
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.94 E-value=8.3e-05 Score=52.69 Aligned_cols=83 Identities=16% Similarity=0.052 Sum_probs=45.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++ .++.... .....+++|++|+|+++ .++.-.... ...+++|++|+|++ ..++.-... ....+++|
T Consensus 55 ~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L 128 (193)
T 2wfh_A 55 HLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHG-NDISVVPEG-AFNDLSAL 128 (193)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCS-SCCCBCCTT-TTTTCTTC
T ss_pred CCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCC-CCCCeeChh-hhhcCccc
Confidence 3778877764 2322111 11235677888888773 444221111 23467888888887 335421111 23346788
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
+.|++++++
T Consensus 129 ~~L~L~~N~ 137 (193)
T 2wfh_A 129 SHLAIGANP 137 (193)
T ss_dssp CEEECCSSC
T ss_pred cEEEeCCCC
Confidence 888887763
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.94 E-value=0.0065 Score=49.41 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=59.7
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHH--HHcCCCCCEEecCCCCCCCHHH-HHHHHhcC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLAL--SKHCAKLQRLDLASCSFITDQS-LKALADGC 170 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~L~~c~~i~~~~-l~~l~~~~ 170 (189)
+|++|.+.++. ++.-. ..+...+++|++|+++++ .+++...... ...+++|++|+|+++. ++.-. .......+
T Consensus 311 ~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l 386 (549)
T 2z81_A 311 KVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTL 386 (549)
T ss_dssp TCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGC
T ss_pred cceEEEeccCc-cccCC-HHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcC
Confidence 49999998863 33111 223347899999999995 6776544332 3468999999999965 65432 22345568
Q ss_pred CCCCeeecccCcCcC
Q psy9585 171 RNLTHINISWCINIT 185 (189)
Q Consensus 171 ~~L~~L~l~~c~~lt 185 (189)
++|++|++++| .++
T Consensus 387 ~~L~~L~Ls~N-~l~ 400 (549)
T 2z81_A 387 KNLTSLDISRN-TFH 400 (549)
T ss_dssp TTCCEEECTTC-CCC
T ss_pred CCCCEEECCCC-CCc
Confidence 99999999998 444
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.91 E-value=0.00014 Score=57.83 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=67.5
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC 144 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 144 (189)
..++.++++.. .+....- .....+. +|++|+++++....... ......+++|++|+|+++ .++...... ...+
T Consensus 30 ~~l~~L~Ls~n--~i~~~~~-~~~~~l~-~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLN--SIAELNE-TSFSRLQ-DLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN-QFLQLETGA-FNGL 102 (455)
T ss_dssp TTCCEEECCSS--CCCEECT-TTTSSCT-TCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTC-TTCEECTTT-TTTC
T ss_pred CccCEEEecCC--ccCcCCh-hHhccCc-cccEEECcCCcccceEC-cccccccccCCEEeCCCC-ccCccChhh-ccCc
Confidence 44667777644 2221100 1112334 49999999864321111 112346899999999985 454322222 3458
Q ss_pred CCCCEEecCCCCCCCHHHHHH-HHhcCCCCCeeecccCcCcCC
Q psy9585 145 AKLQRLDLASCSFITDQSLKA-LADGCRNLTHINISWCINITE 186 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~-l~~~~~~L~~L~l~~c~~lt~ 186 (189)
++|++|+|++|. +++..+.. ....+++|++|++++| .++.
T Consensus 103 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~ 143 (455)
T 3v47_A 103 ANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKK 143 (455)
T ss_dssp TTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCS
T ss_pred ccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCc
Confidence 999999999965 66544443 2345899999999998 4543
No 55
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.91 E-value=0.00063 Score=51.20 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=32.4
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|+.|.++++. +++ +.. ...+++|+.|+++++ .+++ +.. ...+++|++|+|+++. +++- .. ...+++|+
T Consensus 92 L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n-~i~~--~~~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~ 159 (291)
T 1h6t_A 92 LGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEHN-GISD--ING-LVHLPQLESLYLGNNK-ITDI--TV-LSRLTKLD 159 (291)
T ss_dssp CCEEECCSSC-CCC--GGG-GTTCTTCCEEECTTS-CCCC--CGG-GGGCTTCCEEECCSSC-CCCC--GG-GGGCTTCS
T ss_pred CCEEECCCCc-CCC--Chh-hccCCCCCEEECCCC-cCCC--Chh-hcCCCCCCEEEccCCc-CCcc--hh-hccCCCCC
Confidence 5666665542 222 111 224555555555553 2332 111 2235555555555532 3321 11 22355555
Q ss_pred eeecccC
Q psy9585 175 HINISWC 181 (189)
Q Consensus 175 ~L~l~~c 181 (189)
+|++++|
T Consensus 160 ~L~L~~N 166 (291)
T 1h6t_A 160 TLSLEDN 166 (291)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 5555555
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.90 E-value=0.00099 Score=50.51 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=15.5
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
+++|++|+|+++. +++- .. ...+++|++|++++|
T Consensus 150 l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 150 LTNLQYLSIGNAQ-VSDL--TP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSS
T ss_pred CCCccEEEccCCc-CCCC--hh-hcCCCCCCEEECCCC
Confidence 4555555555532 3321 11 233555555555555
No 57
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.90 E-value=6.2e-05 Score=54.41 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=43.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++ .++.-. ..+...+++|+.|+|+++ .++.-.... ...+++|++|+|+++ .++...... ...+++|
T Consensus 81 ~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L 154 (220)
T 2v9t_B 81 SLNSLVLYGN-KITELP-KSLFEGLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKGT-FSPLRAI 154 (220)
T ss_dssp SCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTC
T ss_pred CCCEEECCCC-cCCccC-HhHccCCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCC-cCCEECHHH-HhCCCCC
Confidence 3777777664 222110 112235677777777763 344221112 234677777777773 343222122 2336777
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
++|++++++
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 888887763
No 58
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.90 E-value=0.0007 Score=56.36 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=28.2
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|+.|+|++| .+++.. . ...+++|+.|+|++|. +++ +.. ...+++|+.|+|++|
T Consensus 151 ~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~-i~~--l~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 151 RLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSKNH-ISD--LRA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp SCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC-CCB--CGG-GTTCTTCSEEECCSE
T ss_pred ccCCCCEEECcCC-cCCCch--h-hccCCCCCEEECcCCC-CCC--ChH-HccCCCCCEEEccCC
Confidence 4555666666553 233211 1 3345666666666632 433 122 223566666666665
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.89 E-value=0.00035 Score=56.62 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=15.0
Q ss_pred cCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCC
Q psy9585 117 YCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~ 154 (189)
.+++|++|+++++ .++. ..+......+++|++|+|++
T Consensus 346 ~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 346 HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCC
Confidence 3444555555543 2332 11222223344555555544
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=96.85 E-value=0.00019 Score=55.09 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=15.4
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASC 155 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c 155 (189)
.+++|++|+|+++ .++ .+..-...+++|++|+|++|
T Consensus 125 ~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 125 QFAGLETLTLARN-PLR--ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp GGTTCSEEEEESC-CCC--CCCGGGGGCTTCCEEEEEEE
T ss_pred ccCCCCEEECCCC-ccc--cCcHHHhcCcCCCEEECCCC
Confidence 4455555555543 232 11111223455555555554
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.84 E-value=0.0022 Score=51.36 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=6.5
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|++|++++|
T Consensus 374 l~~L~~L~l~~n 385 (466)
T 1o6v_A 374 LTRITQLGLNDQ 385 (466)
T ss_dssp CTTCCEEECCCE
T ss_pred CCCCCEEeccCC
Confidence 455555555555
No 62
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.78 E-value=4.3e-05 Score=54.07 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=46.6
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++... ......+++|++|+|+++ .++.-.... ...+++|++|+|++ ..++...... ...+++|
T Consensus 55 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L 128 (192)
T 1w8a_A 55 HLVKLELKRN-QLTGIE-PNAFEGASHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYD-NQISCVMPGS-FEHLNSL 128 (192)
T ss_dssp TCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCS-SCCCEECTTS-STTCTTC
T ss_pred CCCEEECCCC-CCCCcC-HhHcCCcccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCC-CcCCeeCHHH-hhcCCCC
Confidence 3888888775 332211 112235677888888773 454322111 23467888888887 3454321122 2346788
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
++|++++++
T Consensus 129 ~~L~L~~N~ 137 (192)
T 1w8a_A 129 TSLNLASNP 137 (192)
T ss_dssp CEEECTTCC
T ss_pred CEEEeCCCC
Confidence 888888873
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.78 E-value=0.00053 Score=55.58 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=20.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLC 129 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 129 (189)
+|+.|.++++..-.-..+......+++|+.|+++++
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 367777766532222233334446677777777764
No 64
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.78 E-value=8e-05 Score=53.83 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=46.7
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|.++++. ++... ......+++|++|+|+++ .++.-.... ...+++|++|+|+++ .++...... ...+++|
T Consensus 82 ~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L 155 (220)
T 2v70_A 82 GVNEILLTSNR-LENVQ-HKMFKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDN-QITTVAPGA-FDTLHSL 155 (220)
T ss_dssp TCCEEECCSSC-CCCCC-GGGGTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTS-CCCCBCTTT-TTTCTTC
T ss_pred CCCEEECCCCc-cCccC-HhHhcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCC-cCCEECHHH-hcCCCCC
Confidence 47888887743 22211 112336778888888774 444211111 234678888888873 344321122 2347788
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
++|++++++
T Consensus 156 ~~L~L~~N~ 164 (220)
T 2v70_A 156 STLNLLANP 164 (220)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCcC
Confidence 888888773
No 65
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.76 E-value=0.00011 Score=52.03 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=49.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH---------HHH
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ---------SLK 164 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~---------~l~ 164 (189)
+|+.|+++++ .++. +.. ...+++|+.|+++++ .+++-........+++|++|+++++. +++. ...
T Consensus 94 ~L~~L~L~~N-~l~~--l~~-~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 94 TLEELWISYN-QIAS--LSG-IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRI 167 (198)
T ss_dssp HCSEEEEEEE-ECCC--HHH-HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHH
T ss_pred cCCEEECcCC-cCCc--CCc-cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHH
Confidence 3888888876 3333 222 236788999999885 56542221233458999999999853 4332 223
Q ss_pred HHHhcCCCCCeee
Q psy9585 165 ALADGCRNLTHIN 177 (189)
Q Consensus 165 ~l~~~~~~L~~L~ 177 (189)
.+...+|+|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 3455689999887
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.76 E-value=3.9e-05 Score=58.01 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=25.7
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|+.|+++++ .++...... ...+++|++|+|+++. +++..... ...+++|++|++++|
T Consensus 173 ~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 173 ELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN 233 (306)
T ss_dssp TCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS
T ss_pred hCcCCCEEECCCC-CcCCcCHHH-hcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC
Confidence 3445555555553 233211111 1234555555555532 32211111 123555666666555
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=96.75 E-value=0.00019 Score=55.33 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=47.6
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++..... ....+++|++|+++++ .++.-.. .....+++|++|+|+++ .++.-........+++|
T Consensus 77 ~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 77 NLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTC
T ss_pred CCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCchhhhccCCCC
Confidence 3777777775 33321111 1235677888888774 4443211 22345788888888874 34421110123447788
Q ss_pred CeeecccCcCc
Q psy9585 174 THINISWCINI 184 (189)
Q Consensus 174 ~~L~l~~c~~l 184 (189)
++|++++|..+
T Consensus 152 ~~L~l~~n~~~ 162 (353)
T 2z80_A 152 QILRVGNMDTF 162 (353)
T ss_dssp CEEEEEESSSC
T ss_pred cEEECCCCccc
Confidence 88888877433
No 68
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.71 E-value=0.00038 Score=57.52 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=52.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHH-HHHHHhcCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQS-LKALADGCRN 172 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~-l~~l~~~~~~ 172 (189)
+|+.|+++++ .++ .+......+++|+.|+|+++ .++. +.. ...+++|++|+|+++ .++... ...+ ..+++
T Consensus 464 ~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~ 534 (567)
T 1dce_A 464 LVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VDG-VANLPRLQELLLCNN-RLQQSAAIQPL-VSCPR 534 (567)
T ss_dssp TCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSS-CCCSSSTTGGG-GGCTT
T ss_pred cCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCCCcEEECCCC-CCCCCCCcHHH-hcCCC
Confidence 4888888875 333 22223447888888888884 5553 333 345788999999884 465432 2333 34888
Q ss_pred CCeeecccCc
Q psy9585 173 LTHINISWCI 182 (189)
Q Consensus 173 L~~L~l~~c~ 182 (189)
|+.|+++++.
T Consensus 535 L~~L~L~~N~ 544 (567)
T 1dce_A 535 LVLLNLQGNS 544 (567)
T ss_dssp CCEEECTTSG
T ss_pred CCEEEecCCc
Confidence 9999998883
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.70 E-value=7.6e-05 Score=55.58 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=35.6
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|++|+++++. ++..... ....+++|++|+++++ .++...... ...+++|++|+|+++. ++...+......+++|+
T Consensus 78 L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 78 LSTLILTGNP-IQSLALG-AFSGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp CCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCC
T ss_pred CCEEECCCCc-cCccChh-hhcCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCCc-cceecCchhhccCCCCC
Confidence 6666666542 2211111 1124556666666553 222111001 2235666666666532 33211112223356666
Q ss_pred eeecccC
Q psy9585 175 HINISWC 181 (189)
Q Consensus 175 ~L~l~~c 181 (189)
+|++++|
T Consensus 153 ~L~Ls~N 159 (276)
T 2z62_A 153 HLDLSSN 159 (276)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666665
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=96.69 E-value=0.0002 Score=53.58 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=33.5
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~ 182 (189)
.+++|+.|+++++ .++...... ...+++|++|+|+++ .+++.....+ ..+++|++|++++++
T Consensus 175 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 175 GLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred CccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccCCC
Confidence 4556666666653 333221122 223667777777774 3443322333 347778888887774
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=96.65 E-value=0.00027 Score=52.62 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=45.8
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|.++++ .++... ......+++|++|+++++ .++.-. ......+++|++|+|+++ .++.... .....+++|
T Consensus 86 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L 159 (272)
T 3rfs_A 86 NLTYLILTGN-QLQSLP-NGVFDKLTNLKELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNL 159 (272)
T ss_dssp TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CCCEEECCCC-ccCccC-hhHhcCCcCCCEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccCH-HHhccCccC
Confidence 3777777765 222111 111235677777777774 343211 111234677888888775 3442111 122347788
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|++++| .++
T Consensus 160 ~~L~l~~n-~l~ 170 (272)
T 3rfs_A 160 TELDLSYN-QLQ 170 (272)
T ss_dssp CEEECCSS-CCC
T ss_pred CEEECCCC-CcC
Confidence 88888887 444
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.65 E-value=0.00022 Score=54.45 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=44.7
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++..... ....+++|+.|+++++ .++...... ...+++|++|+|+++. ++ .+..-...+++|
T Consensus 193 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L 265 (330)
T 1xku_A 193 SLTELHLDGN-KITKVDAA-SLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNNK-LV--KVPGGLADHKYI 265 (330)
T ss_dssp TCSEEECTTS-CCCEECTG-GGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSSC-CS--SCCTTTTTCSSC
T ss_pred cCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCCc-Cc--cCChhhccCCCc
Confidence 3555555553 22221111 2235677777877774 344322112 2346778888888753 44 111112346778
Q ss_pred CeeecccCcCcCC
Q psy9585 174 THINISWCINITE 186 (189)
Q Consensus 174 ~~L~l~~c~~lt~ 186 (189)
++|++++| .++.
T Consensus 266 ~~L~l~~N-~i~~ 277 (330)
T 1xku_A 266 QVVYLHNN-NISA 277 (330)
T ss_dssp CEEECCSS-CCCC
T ss_pred CEEECCCC-cCCc
Confidence 88888877 4543
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=96.65 E-value=0.00013 Score=54.42 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=49.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|.++++. ++... ......+++|+.|+++++ .++.-. ......+++|++|+|+++. +++... .....+++|
T Consensus 110 ~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L 183 (272)
T 3rfs_A 110 NLKELVLVENQ-LQSLP-DGVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQL 183 (272)
T ss_dssp TCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred CCCEEECCCCc-CCccC-HHHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCCC-cCccCH-HHhcCCccC
Confidence 48888887753 32111 112236678888888875 444211 1223457888888888853 542211 123347888
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|++++| .++
T Consensus 184 ~~L~L~~N-~l~ 194 (272)
T 3rfs_A 184 KDLRLYQN-QLK 194 (272)
T ss_dssp CEEECCSS-CCS
T ss_pred CEEECCCC-cCC
Confidence 88888887 344
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.64 E-value=0.00013 Score=60.13 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=60.5
Q ss_pred CCCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585 64 GSNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142 (189)
Q Consensus 64 ~~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 142 (189)
|...+.++++...- .+....+ ..+. +|+.|+++++. ++.-. ...+..+++|++|+|+++ .++.-.. ....
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f----~~l~-~L~~L~Ls~N~-i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~-~~f~ 121 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSF----FSFP-ELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGN-PIQSLAL-GAFS 121 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTT----TTCT-TCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTC-CCCEECG-GGGT
T ss_pred CcCCCEEEeeCCCCCCCCHHHH----hCCC-CCCEEECCCCc-CCCcC-hhHhcCCCCCCEEEccCC-cCCCCCH-HHhc
Confidence 34567777764321 1111112 2334 48888888863 32111 112336788999999885 4543111 2234
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585 143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~ 182 (189)
.+++|++|+|+++. ++.-.-.. ..++++|++|+++++.
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~~~-~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNL 159 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-CCCCChhh-hhcCcccCeeccccCc
Confidence 58899999998853 44211111 3457889999999883
No 75
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.64 E-value=0.0001 Score=53.23 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=52.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|.++++ .++...-. ....+++|++|+|+++ .++.-.. .....+++|++|+|+++ .++......+ ..+++|
T Consensus 58 ~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L 131 (220)
T 2v70_A 58 QLRKINFSNN-KITDIEEG-AFEGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSN-RITCVGNDSF-IGLSSV 131 (220)
T ss_dssp TCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTS-CCCCBCTTSS-TTCTTC
T ss_pred CCCEEECCCC-cCCEECHH-HhCCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCC-cCCeECHhHc-CCCccC
Confidence 4888888875 33322111 2236788999999884 4443221 22345889999999984 3543221222 347899
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 132 ~~L~L~~N-~l~ 142 (220)
T 2v70_A 132 RLLSLYDN-QIT 142 (220)
T ss_dssp SEEECTTS-CCC
T ss_pred CEEECCCC-cCC
Confidence 99999988 444
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.62 E-value=0.00014 Score=53.55 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=51.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++... ......+++|+.|+|+++ .++.-. ......+++|++|+|+++ .++.-.. .....+++|
T Consensus 60 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L 133 (251)
T 3m19_A 60 KLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKL 133 (251)
T ss_dssp TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred cCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcc
Confidence 4888888875 333211 112236788888888884 454211 122345788999999884 4552111 123457889
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 134 ~~L~Ls~N-~l~ 144 (251)
T 3m19_A 134 KELRLNTN-QLQ 144 (251)
T ss_dssp CEEECCSS-CCC
T ss_pred cEEECcCC-cCC
Confidence 99999888 454
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.61 E-value=4.9e-05 Score=57.44 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++. ++... ......+++|++|+++++ .+++.........+++|++|+|+++. +++.....+ ..+++|
T Consensus 127 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L 201 (306)
T 2z66_A 127 NLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSL 201 (306)
T ss_dssp TCCEEECTTSC-CEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTC
T ss_pred CCCEEECCCCc-CCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHh-cCCCCC
Confidence 36777776642 21111 112235677888888774 34332222333457888888888853 543222223 347888
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|++++| .++
T Consensus 202 ~~L~L~~N-~l~ 212 (306)
T 2z66_A 202 QVLNMSHN-NFF 212 (306)
T ss_dssp CEEECTTS-CCS
T ss_pred CEEECCCC-ccC
Confidence 88888887 344
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.61 E-value=0.00012 Score=54.58 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=52.3
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++ .++..... ....+++|++|+++++ .++...... ...+++|++|+++++. ++...-.. ...+++|
T Consensus 53 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L 126 (276)
T 2z62_A 53 ELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGA-FSGLSSLQKLVAVETN-LASLENFP-IGHLKTL 126 (276)
T ss_dssp TCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTSC-CCCSTTCC-CTTCTTC
T ss_pred CCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChhh-hcCCccccEEECCCCC-ccccCchh-cccCCCC
Confidence 4999999886 33322111 2236788999999885 444322222 2357899999998854 43211111 3357899
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 127 ~~L~l~~n-~l~ 137 (276)
T 2z62_A 127 KELNVAHN-LIQ 137 (276)
T ss_dssp CEEECCSS-CCC
T ss_pred CEEECcCC-ccc
Confidence 99999988 444
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.61 E-value=0.00014 Score=51.85 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=47.4
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++. ++... ......+++|+.|+++++ .++.-. ......+++|++|+|+++ .++.... .....+++|
T Consensus 77 ~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L 150 (208)
T 2o6s_A 77 SLTYLNLSTNQ-LQSLP-NGVFDKLTQLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSL 150 (208)
T ss_dssp TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTC
T ss_pred CcCEEECCCCc-CCccC-HhHhcCccCCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCc
Confidence 48888887752 32111 112236778888888774 444211 112345788888888874 3442111 223447888
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
++|++++++
T Consensus 151 ~~L~l~~N~ 159 (208)
T 2o6s_A 151 QYIWLHDNP 159 (208)
T ss_dssp CEEECCSCC
T ss_pred cEEEecCCC
Confidence 888888874
No 80
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.61 E-value=0.00015 Score=50.20 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585 93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN 172 (189)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~ 172 (189)
.+++.|.+++. .++... ......+++|+.|+|++. .++.- ...+...+++|++|+|++ ..++.-.- .....+++
T Consensus 30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLND-NQLKSIPR-GAFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTT
T ss_pred CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCC-CccCEeCH-HHhcCCCC
Confidence 45888888875 332211 112236778888888873 45421 112234578888888888 44542111 12334788
Q ss_pred CCeeecccCc
Q psy9585 173 LTHINISWCI 182 (189)
Q Consensus 173 L~~L~l~~c~ 182 (189)
|++|++++++
T Consensus 104 L~~L~L~~N~ 113 (170)
T 3g39_A 104 LTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 8888888873
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.61 E-value=5.7e-05 Score=61.80 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=5.7
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|++|+++++
T Consensus 517 l~~L~~L~l~~N 528 (570)
T 2z63_A 517 LTSLQKIWLHTN 528 (570)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCcEEEecCC
Confidence 444444444444
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=96.59 E-value=0.00019 Score=55.42 Aligned_cols=84 Identities=19% Similarity=0.101 Sum_probs=47.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++.... .....+++|++|+++++ .++.-........+++|++|+++++..++...... ...+++|
T Consensus 101 ~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L 176 (353)
T 2z80_A 101 SLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFL 176 (353)
T ss_dssp TCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEE
T ss_pred CCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCC
Confidence 4888888775 3332111 22346778888888774 34421100123457788888888764343221122 2346788
Q ss_pred CeeecccC
Q psy9585 174 THINISWC 181 (189)
Q Consensus 174 ~~L~l~~c 181 (189)
++|++++|
T Consensus 177 ~~L~l~~n 184 (353)
T 2z80_A 177 EELEIDAS 184 (353)
T ss_dssp EEEEEEET
T ss_pred CEEECCCC
Confidence 88888877
No 83
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.58 E-value=0.00038 Score=59.43 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=28.2
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|++|+++++. ++.. ... ...+++|++|+|+++. +++.....+ ..+++|++|++++|
T Consensus 198 ~l~~L~~L~Ls~n~-l~~~-~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 198 RCVNLEFLDVSSNN-FSTG-IPF-LGDCSALQHLDISGNK-LSGDFSRAI-STCTELKLLNISSN 257 (768)
T ss_dssp TCTTCCEEECCSSC-CCSC-CCB-CTTCCSCCEEECCSSC-CCSCHHHHT-TTCSSCCEEECCSS
T ss_pred cCCcCCEEECcCCc-CCCC-Ccc-cccCCCCCEEECcCCc-CCCcccHHH-hcCCCCCEEECCCC
Confidence 44555555555532 2210 111 2335666666666633 443323333 23566666666665
No 84
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.57 E-value=6.8e-05 Score=53.00 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=26.9
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|+.|+|+++ .++.-.... ...+++|++|+|++ ..++...... ..++++|++|+++++
T Consensus 52 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 52 RLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGE-NKIKEISNKM-FLGLHQLKTLNLYDN 112 (192)
T ss_dssp GCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCS-CCCCEECSSS-STTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCC-CcCCccCHHH-hcCCCCCCEEECCCC
Confidence 4556666666553 333211111 22355666666665 2233211111 122455666666555
No 85
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.56 E-value=0.00026 Score=51.40 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=44.3
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++ .++... ......+++|+.|+|+++ .++ .+..-...+++|++|+|++. .++.-.. .....+++|
T Consensus 89 ~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L 161 (229)
T 3e6j_A 89 QLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCCN-KLT--ELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSL 161 (229)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCC--SCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CcCEEECCCC-cCCccC-hhHhCcchhhCeEeccCC-ccc--ccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCC
Confidence 3777777764 232111 112235677777777773 444 12112245777888888773 3442111 123346778
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
+.|++++++
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 888887763
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.55 E-value=0.00075 Score=50.05 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585 119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
++|+.|+++++ .+++ +.. ...+++|++|+|+++ .+++- .. ...+++|++|++++| .+++
T Consensus 106 ~~L~~L~L~~N-~l~~--~~~-l~~l~~L~~L~Ls~N-~i~~~--~~-l~~l~~L~~L~L~~N-~i~~ 164 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRD--TDS-LIHLKNLEILSIRNN-KLKSI--VM-LGFLSKLEVLDLHGN-EITN 164 (263)
T ss_dssp SSCCEEECCSS-CCSB--SGG-GTTCTTCCEEECTTS-CCCBC--GG-GGGCTTCCEEECTTS-CCCB
T ss_pred CcccEEEccCC-ccCC--Chh-hcCcccccEEECCCC-cCCCC--hH-HccCCCCCEEECCCC-cCcc
Confidence 56666666664 3433 122 335778888888874 35542 22 334788888888887 4543
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.54 E-value=0.00091 Score=49.60 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=53.0
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|.++++ .+++. .. ...+++|+.|+++++ .+++- .. ...+++|++|+|+++ .+++. .. ...+++|
T Consensus 107 ~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~--~~-l~~l~~L~~L~L~~N-~i~~~--~~-l~~l~~L 174 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSI--VM-LGFLSKLEVLDLHGN-EITNT--GG-LTRLKKV 174 (263)
T ss_dssp SCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBC--GG-GGGCTTCCEEECTTS-CCCBC--TT-STTCCCC
T ss_pred cccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCC--hH-HccCCCCCEEECCCC-cCcch--HH-hccCCCC
Confidence 4666666664 33321 22 347899999999995 56542 23 445899999999995 46654 33 3458999
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
+.|+++++.
T Consensus 175 ~~L~l~~N~ 183 (263)
T 1xeu_A 175 NWIDLTGQK 183 (263)
T ss_dssp CEEEEEEEE
T ss_pred CEEeCCCCc
Confidence 999999884
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.53 E-value=0.00016 Score=53.09 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=65.3
Q ss_pred CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585 65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143 (189)
Q Consensus 65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 143 (189)
..++.+++++... .+....+ .... +|+.|+++++ .++... ......+++|++|+|+++ .++.-. ......
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~----~~l~-~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~ 129 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVF----DDLT-ELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGN-QLKSLP-SGVFDR 129 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT----TTCT-TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTT
T ss_pred ccCCEEECCCCcCCccCHhHh----ccCC-cCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCC-cCCCcC-hhHhcc
Confidence 4567777765421 1111111 2234 5999999985 333211 122347889999999985 555211 122345
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
+++|++|+|+++ .++...... ...+++|++|+++++ .++
T Consensus 130 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~ 168 (251)
T 3m19_A 130 LTKLKELRLNTN-QLQSIPAGA-FDKLTNLQTLSLSTN-QLQ 168 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCS
T ss_pred CCcccEEECcCC-cCCccCHHH-cCcCcCCCEEECCCC-cCC
Confidence 899999999984 465322222 335799999999998 454
No 89
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.51 E-value=0.00027 Score=56.68 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=7.7
Q ss_pred cCCCcceEecccC
Q psy9585 117 YCNNVEDINLNLC 129 (189)
Q Consensus 117 ~~~~L~~L~l~~~ 129 (189)
.+++|+.|+|+++
T Consensus 246 ~l~~L~~L~Ls~n 258 (477)
T 2id5_A 246 HLVYLRFLNLSYN 258 (477)
T ss_dssp TCTTCCEEECCSS
T ss_pred CccccCeeECCCC
Confidence 5566666666653
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.51 E-value=0.00018 Score=51.30 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=53.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++... ......+++|++|+++++ .++.-. ......+++|++|+|+++ .++.... .....+++|
T Consensus 53 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L 126 (208)
T 2o6s_A 53 SLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLP-NGVFDKLTQLKELALNTN-QLQSLPD-GVFDKLTQL 126 (208)
T ss_dssp TCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred cCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccC-HhHhcCccCCCEEEcCCC-cCcccCH-hHhccCCcC
Confidence 4999999885 333211 112346789999999885 454211 122345789999999984 3542211 123457899
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 127 ~~L~l~~N-~l~ 137 (208)
T 2o6s_A 127 KDLRLYQN-QLK 137 (208)
T ss_dssp CEEECCSS-CCS
T ss_pred CEEECCCC-ccc
Confidence 99999988 454
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.48 E-value=0.0002 Score=53.25 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=33.4
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
.+++|+.|+++++ .++.-.. .....+++|++|+|+++. ++...... ...+++|++|++++| .++
T Consensus 131 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~ 194 (270)
T 2o6q_A 131 SLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNNQ-LKRVPEGA-FDKLTELKTLKLDNN-QLK 194 (270)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSS-CCS
T ss_pred cCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCCc-CcEeChhH-hccCCCcCEEECCCC-cCC
Confidence 5566777777664 3332111 112346777777777643 33211111 233677788887777 343
No 92
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.48 E-value=0.00018 Score=49.87 Aligned_cols=83 Identities=14% Similarity=0.098 Sum_probs=49.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++... ......+++|+.|+++++ .++.-. ......+++|++|+|+++ .++.- ...+...+++|
T Consensus 53 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L 126 (177)
T 2o6r_A 53 QLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSL 126 (177)
T ss_dssp TCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTC
T ss_pred cccEEECCCC-cceEeC-hhHccCCCccCEEECCCC-CccccC-HHHhhCCcccCEEECcCC-cceEe-CHHHhcCCccc
Confidence 4888888875 333111 112236778888888874 454211 112345788889988884 45421 11223457889
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
++|++++++
T Consensus 127 ~~L~l~~N~ 135 (177)
T 2o6r_A 127 QKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999998874
No 93
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.46 E-value=4.3e-05 Score=58.21 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=41.8
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++..+....... ...+++|++|+++++ .++...... ...+++|++|+|+++. ++......+ ..+++|
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L 151 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNA-LSGTLPPSI-SSLPNL 151 (313)
T ss_dssp TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSE-EESCCCGGG-GGCTTC
T ss_pred CCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCc-cCCcCChHH-hcCCCC
Confidence 48888887422222111111 236677777777764 343211112 2346777777777643 332111122 336677
Q ss_pred CeeecccC
Q psy9585 174 THINISWC 181 (189)
Q Consensus 174 ~~L~l~~c 181 (189)
++|++++|
T Consensus 152 ~~L~L~~N 159 (313)
T 1ogq_A 152 VGITFDGN 159 (313)
T ss_dssp CEEECCSS
T ss_pred CeEECcCC
Confidence 77777666
No 94
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.44 E-value=0.00017 Score=50.15 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585 93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN 172 (189)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~ 172 (189)
.+|+.|.+++.. ++... ......+++|+.|+|++. .++.- ...+...+++|++|+|++ ..++.-. ......+++
T Consensus 33 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~-N~l~~l~-~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLND-NHLKSIP-RGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTT
T ss_pred CCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCC-CccceeC-HHHhccccC
Confidence 458888888753 32211 112336788888888884 55431 112234578888888888 4454211 112334788
Q ss_pred CCeeecccCc
Q psy9585 173 LTHINISWCI 182 (189)
Q Consensus 173 L~~L~l~~c~ 182 (189)
|++|++++++
T Consensus 107 L~~L~L~~N~ 116 (174)
T 2r9u_A 107 LTHIYLYNNP 116 (174)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 8888888874
No 95
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=96.44 E-value=0.00029 Score=55.03 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=39.2
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
|++|+++++. ++.... .....+++|++|+++++ .++. ....+...+++|++|+|+++. ++...... ...+++|+
T Consensus 95 L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~-l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~ 168 (390)
T 3o6n_A 95 IQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIEDDT-FQATTSLQ 168 (390)
T ss_dssp CCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTTT-TSSCTTCC
T ss_pred cCEEECCCCC-CCcCCH-HHhcCCCCCCEEECCCC-ccCc-CCHHHhcCCCCCcEEECCCCc-cCccChhh-ccCCCCCC
Confidence 6666666542 221111 11235566777777664 3331 111122346677777777643 33211111 23366777
Q ss_pred eeecccC
Q psy9585 175 HINISWC 181 (189)
Q Consensus 175 ~L~l~~c 181 (189)
+|+++++
T Consensus 169 ~L~l~~n 175 (390)
T 3o6n_A 169 NLQLSSN 175 (390)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 7777776
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.42 E-value=0.0017 Score=54.21 Aligned_cols=86 Identities=10% Similarity=0.170 Sum_probs=56.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHH-----cCCCCCEEecCCCCCCCHHHHHH--
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSK-----HCAKLQRLDLASCSFITDQSLKA-- 165 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~-----~~~~L~~L~L~~c~~i~~~~l~~-- 165 (189)
+|++|.++++...+. +......+++|+.|+++++..++. .....+.. .+++|++|+|+++. ++ .+..
T Consensus 250 ~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~ 324 (636)
T 4eco_A 250 DLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVET 324 (636)
T ss_dssp TCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHH
T ss_pred CCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchh
Confidence 599999998743221 112233788999999999643776 33333332 24899999999854 65 3332
Q ss_pred HHhcCCCCCeeecccCcCcC
Q psy9585 166 LADGCRNLTHINISWCINIT 185 (189)
Q Consensus 166 l~~~~~~L~~L~l~~c~~lt 185 (189)
....+++|++|++++| .++
T Consensus 325 ~l~~l~~L~~L~L~~N-~l~ 343 (636)
T 4eco_A 325 SLQKMKKLGMLECLYN-QLE 343 (636)
T ss_dssp HHTTCTTCCEEECCSC-CCE
T ss_pred hhccCCCCCEEeCcCC-cCc
Confidence 3445889999999988 344
No 97
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.41 E-value=5.1e-05 Score=57.81 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCccEEeecCCCCCCH-HHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q psy9585 93 GFLRQISLRGCQSMTD-NSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCR 171 (189)
Q Consensus 93 ~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~ 171 (189)
.+++.|+++++. ++. ..+......+++|++|+++++..++...... ...+++|++|+|+++. ++......+ ..++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPDFL-SQIK 125 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCGGG-GGCT
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCe-eCCcCCHHH-hCCC
Confidence 359999999863 332 0112234478999999999534444322223 3458999999999854 542222223 4589
Q ss_pred CCCeeecccCcCcC
Q psy9585 172 NLTHINISWCINIT 185 (189)
Q Consensus 172 ~L~~L~l~~c~~lt 185 (189)
+|++|+++++ .++
T Consensus 126 ~L~~L~Ls~N-~l~ 138 (313)
T 1ogq_A 126 TLVTLDFSYN-ALS 138 (313)
T ss_dssp TCCEEECCSS-EEE
T ss_pred CCCEEeCCCC-ccC
Confidence 9999999998 444
No 98
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.41 E-value=0.00027 Score=49.02 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=15.2
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
.+++|+.|+++++ .++.- ...+...+++|++|+|++
T Consensus 98 ~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 98 KLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp TCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCS
T ss_pred CCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecC
Confidence 3455555555542 23210 111122345555555555
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.40 E-value=0.00023 Score=52.90 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=46.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++. ++... ......+++|+.|+++++ .++.-... ....+++|++|+|+++ .++..... ....+++|
T Consensus 134 ~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L 207 (270)
T 2o6q_A 134 KLTYLSLGYNE-LQSLP-KGVFDKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKL 207 (270)
T ss_dssp TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTC
T ss_pred CCCEEECCCCc-CCccC-HhHccCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC-cCCcCCHH-HhccccCC
Confidence 36677666642 22111 111236788888888874 34321111 1234788888888874 35421111 23347888
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 888888874
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.40 E-value=0.00021 Score=51.84 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=51.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|.++++. ++... ......+++|+.|+|+++ .++.-. ......+++|++|+|++ ..++ .+..-...+++|
T Consensus 65 ~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~-N~l~--~lp~~~~~l~~L 137 (229)
T 3e6j_A 65 NLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCC-NKLT--ELPRGIERLTHL 137 (229)
T ss_dssp TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCC--SCCTTGGGCTTC
T ss_pred CCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcchhhCeEeccC-Cccc--ccCcccccCCCC
Confidence 48888888753 32111 112346788999999884 454211 12234578899999988 4455 222223558899
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 138 ~~L~L~~N-~l~ 148 (229)
T 3e6j_A 138 THLALDQN-QLK 148 (229)
T ss_dssp SEEECCSS-CCC
T ss_pred CEEECCCC-cCC
Confidence 99999987 444
No 101
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.34 E-value=0.00011 Score=60.72 Aligned_cols=11 Identities=27% Similarity=0.449 Sum_probs=5.1
Q ss_pred CCCCCEEecCC
Q psy9585 144 CAKLQRLDLAS 154 (189)
Q Consensus 144 ~~~L~~L~L~~ 154 (189)
+++|++|+|++
T Consensus 496 l~~L~~L~Ls~ 506 (606)
T 3vq2_A 496 LHRLQLLNMSH 506 (606)
T ss_dssp CTTCCEEECCS
T ss_pred cccCCEEECCC
Confidence 44444444444
No 102
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.34 E-value=0.00012 Score=59.86 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=58.6
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++. +.... ......+++|++|++++| .+++..+......+++|++|+|++|. +++.....+ ..+++|
T Consensus 422 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L 496 (570)
T 2z63_A 422 NLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSL 496 (570)
T ss_dssp TCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTC
T ss_pred CCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhh-hcccCC
Confidence 49999999863 22211 123347899999999996 34432233334568999999999964 654323333 358999
Q ss_pred CeeecccCcCcCC
Q psy9585 174 THINISWCINITE 186 (189)
Q Consensus 174 ~~L~l~~c~~lt~ 186 (189)
++|++++| .+++
T Consensus 497 ~~L~l~~n-~l~~ 508 (570)
T 2z63_A 497 QVLNMASN-QLKS 508 (570)
T ss_dssp CEEECCSS-CCSC
T ss_pred CEEeCCCC-cCCC
Confidence 99999998 4554
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.33 E-value=0.00044 Score=58.79 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=61.8
Q ss_pred CCCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585 64 GSNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142 (189)
Q Consensus 64 ~~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 142 (189)
...++.++++.... .+..... ... +|++|.|+++ .++ .+..-+..+++|+.|+|+++ .++ .+..-..
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~-----~l~-~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~ 290 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIF-----KYD-FLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT--SLPAELG 290 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGG-----GCC-SCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS--SCCSSGG
T ss_pred CCCCcEEECCCCCCCCCChhhc-----CCC-CCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC--ccChhhc
Confidence 35567777765432 1222211 334 4888888875 333 22222346788888888884 455 2222234
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
.+++|++|+|+++ .++ .+..-...+++|++|+|+++ .++
T Consensus 291 ~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~ 329 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGN-PLE 329 (727)
T ss_dssp GGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTS-CCC
T ss_pred CCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCC-ccC
Confidence 5788889988884 354 11111345788899999888 344
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.32 E-value=0.00022 Score=50.45 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=36.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
++++|.+++. .++. +......+++|+.|+|+++ .++.-.... ...+++|++|+|++. .++...... ..++++|
T Consensus 32 ~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYN-RLRCIPPRT-FDGLKSL 104 (193)
T ss_dssp TCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTC
T ss_pred CCCEEECCCC-cCch--hHHHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCHHH-hCCCCCC
Confidence 3666666553 2221 1112235566666666653 333211111 223566666666652 233211111 2235666
Q ss_pred CeeecccC
Q psy9585 174 THINISWC 181 (189)
Q Consensus 174 ~~L~l~~c 181 (189)
++|+++++
T Consensus 105 ~~L~L~~N 112 (193)
T 2wfh_A 105 RLLSLHGN 112 (193)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66666665
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.31 E-value=4.2e-05 Score=55.81 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=44.0
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++..++...-. ....+++|++|++++|..++.-.. .....+++|++|+|+++. ++. +.. ...+++|
T Consensus 56 ~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~-l~~--lp~-~~~l~~L 129 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTG-LKM--FPD-LTKVYST 129 (239)
T ss_dssp TCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEEC-CCS--CCC-CTTCCBC
T ss_pred CCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCC-Ccc--ccc-ccccccc
Confidence 3777777765323221111 123567777777776444442111 112346777777777643 332 222 2346666
Q ss_pred C---eeecccCcCc
Q psy9585 174 T---HINISWCINI 184 (189)
Q Consensus 174 ~---~L~l~~c~~l 184 (189)
+ +|+++++..+
T Consensus 130 ~~L~~L~l~~N~~l 143 (239)
T 2xwt_C 130 DIFFILEITDNPYM 143 (239)
T ss_dssp CSEEEEEEESCTTC
T ss_pred ccccEEECCCCcch
Confidence 6 7777776333
No 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.31 E-value=0.00023 Score=56.69 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=4.8
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
++|++|++++|
T Consensus 207 ~~L~~L~Ls~N 217 (440)
T 3zyj_A 207 IKLDELDLSGN 217 (440)
T ss_dssp SSCCEEECTTS
T ss_pred cccCEEECCCC
Confidence 34444444444
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.30 E-value=0.00022 Score=55.38 Aligned_cols=86 Identities=17% Similarity=0.160 Sum_probs=49.7
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHH--hcCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALA--DGCR 171 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~--~~~~ 171 (189)
+|+.|+++++. ++... ......+++|+.|+|+++ .++.-.... ...+++|++|+|+++ .++.-....+. ..++
T Consensus 89 ~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 89 NLRYLDLSSNH-LHTLD-EFLFSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLP 163 (361)
T ss_dssp TCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGTC----CT
T ss_pred CCCEEECCCCc-CCcCC-HHHhCCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHhcCcccCC
Confidence 48888888753 33211 112336788888888884 454321112 335788999999884 35432111111 3478
Q ss_pred CCCeeecccCcCcC
Q psy9585 172 NLTHINISWCINIT 185 (189)
Q Consensus 172 ~L~~L~l~~c~~lt 185 (189)
+|++|+|+++ .++
T Consensus 164 ~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 164 KLMLLDLSSN-KLK 176 (361)
T ss_dssp TCCEEECCSS-CCC
T ss_pred cCCEEECCCC-CCC
Confidence 8999999887 454
No 108
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.27 E-value=0.0078 Score=42.32 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=57.0
Q ss_pred HcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHH-HHHHHh
Q psy9585 90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQS-LKALAD 168 (189)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~-l~~l~~ 168 (189)
... +|+.|+++++. ++ .+......+++|+.|+++++ .++. +..+. .+++|++|+|+++. +++-. +..+.
T Consensus 68 ~l~-~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~-~l~~L~~L~l~~N~-i~~~~~~~~l~- 137 (198)
T 1ds9_A 68 GME-NLRILSLGRNL-IK--KIENLDAVADTLEELWISYN-QIAS--LSGIE-KLVNLRVLYMSNNK-ITNWGEIDKLA- 137 (198)
T ss_dssp HHT-TCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEE-ECCC--HHHHH-HHHHSSEEEESEEE-CCCHHHHHHHT-
T ss_pred cCC-CCCEEECCCCC-cc--cccchhhcCCcCCEEECcCC-cCCc--CCccc-cCCCCCEEECCCCc-CCchhHHHHHh-
Confidence 345 49999998853 33 12233345689999999996 5654 33433 47899999999954 66533 34444
Q ss_pred cCCCCCeeecccCc
Q psy9585 169 GCRNLTHINISWCI 182 (189)
Q Consensus 169 ~~~~L~~L~l~~c~ 182 (189)
.+++|++|++++|.
T Consensus 138 ~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 138 ALDKLEDLLLAGNP 151 (198)
T ss_dssp TTTTCSEEEECSCH
T ss_pred cCCCCCEEEecCCc
Confidence 58999999999984
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=96.27 E-value=0.0011 Score=50.43 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=7.1
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|++|++++|
T Consensus 119 ~~~L~~L~l~~N 130 (317)
T 3o53_A 119 GQGKKNIYLANN 130 (317)
T ss_dssp CSSCEEEECCSS
T ss_pred cCCCCEEECCCC
Confidence 455666666665
No 110
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.26 E-value=0.00012 Score=60.40 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=34.7
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|++|+++++ .+++.........+++|++|+|++|. ++......+ .++++|++|++++|
T Consensus 446 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 446 GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVF-DTLHRLQLLNMSHN 507 (606)
T ss_dssp TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhh-cccccCCEEECCCC
Confidence 5566777777664 34332222223456778888887753 443222222 34677777777776
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.26 E-value=0.0015 Score=54.03 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=58.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
.|+.|+++++ .++. +.. ...+++|+.|+|+++ .++ .+..-...+++|++|+|++ ..++. +.. ...+++|
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~-N~l~~--lp~-l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASD-NALEN--VDG-VANLPRL 510 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCS-SCCCC--CGG-GTTCSSC
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCC-CCCCC--Ccc-cCCCCCC
Confidence 4999999986 3332 233 447889999999995 565 2333345689999999999 44664 343 3458999
Q ss_pred CeeecccCcCcCC
Q psy9585 174 THINISWCINITE 186 (189)
Q Consensus 174 ~~L~l~~c~~lt~ 186 (189)
++|+++++ .++.
T Consensus 511 ~~L~Ls~N-~l~~ 522 (567)
T 1dce_A 511 QELLLCNN-RLQQ 522 (567)
T ss_dssp CEEECCSS-CCCS
T ss_pred cEEECCCC-CCCC
Confidence 99999998 5554
No 112
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.26 E-value=0.00026 Score=56.35 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=16.9
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
+++|++|+|+++..++.-... ...++++|++|++++|
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS
T ss_pred CcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC
Confidence 455555555544333211111 1223566666666665
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.25 E-value=0.00078 Score=56.43 Aligned_cols=110 Identities=18% Similarity=0.194 Sum_probs=64.8
Q ss_pred CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585 65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143 (189)
Q Consensus 65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 143 (189)
..++.++++.... .+....+ ..+. +|++|+++++. ++.... .....+++|++|+++++ .++.-. ......
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~----~~l~-~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANF----TRYS-QLTSLDVGFNT-ISKLEP-ELCQKLPMLKVLNLQHN-ELSQLS-DKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGG----GGGT-TCSEEECCSSC-CCCCCT-THHHHCTTCCEEECCSS-CCCCCC-TTTTTT
T ss_pred CCCcEEECCCCCCCCcCHHHH----hCCC-cCcEEECCCCc-cCccCH-HHHhcccCcCEEECCCC-ccCccC-hhhhcc
Confidence 4567777765421 1222222 2344 49999998853 332211 22347899999999985 444211 112345
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
+++|++|+|+++. ++......+ ..+++|++|++++| .++.
T Consensus 96 l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~ 135 (680)
T 1ziw_A 96 CTNLTELHLMSNS-IQKIKNNPF-VKQKNLITLDLSHN-GLSS 135 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCSCTT-TTCTTCCEEECCSS-CCSC
T ss_pred CCCCCEEECCCCc-cCccChhHc-cccCCCCEEECCCC-cccc
Confidence 8999999999854 442211222 35899999999998 4443
No 114
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.24 E-value=0.00026 Score=56.81 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=50.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++ .++..... ....+++|++|+|+++ .++.-. ......+++|++|+|+++. ++...... ...+++|
T Consensus 57 ~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L 130 (477)
T 2id5_A 57 HLEELELNEN-IVSAVEPG-AFNNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENK-IVILLDYM-FQDLYNL 130 (477)
T ss_dssp TCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSC-CCEECTTT-TTTCTTC
T ss_pred CCCEEECCCC-ccCEeChh-hhhCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCc-cccCChhH-ccccccC
Confidence 4888888875 33332111 2236788999998884 344211 1123457889999998844 44221122 3457899
Q ss_pred CeeecccC
Q psy9585 174 THINISWC 181 (189)
Q Consensus 174 ~~L~l~~c 181 (189)
++|+++++
T Consensus 131 ~~L~l~~n 138 (477)
T 2id5_A 131 KSLEVGDN 138 (477)
T ss_dssp CEEEECCT
T ss_pred CEEECCCC
Confidence 99999887
No 115
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.24 E-value=0.00052 Score=56.83 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=45.1
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++. ++... ......+++|+.|+|+++ .++. ....+...+++|++|+|+++. ++......+ ..+++|
T Consensus 100 ~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~-l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L 173 (597)
T 3oja_B 100 TIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERN-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSL 173 (597)
T ss_dssp TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTC
T ss_pred CCCEEECCCCc-CCCCC-HHHHcCCCCCCEEEeeCC-CCCC-CCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcC
Confidence 37777776642 22211 112235677777777774 3441 111223456777777777743 432221222 346778
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|++++| .++
T Consensus 174 ~~L~L~~N-~l~ 184 (597)
T 3oja_B 174 QNLQLSSN-RLT 184 (597)
T ss_dssp CEEECTTS-CCS
T ss_pred cEEECcCC-CCC
Confidence 88888777 344
No 116
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.24 E-value=0.00025 Score=56.62 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=3.9
Q ss_pred ccEEeecC
Q psy9585 95 LRQISLRG 102 (189)
Q Consensus 95 L~~L~l~~ 102 (189)
|+.|++++
T Consensus 101 L~~L~Ls~ 108 (452)
T 3zyi_A 101 LEVLQLGR 108 (452)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 44444444
No 117
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.23 E-value=0.0033 Score=46.84 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=47.1
Q ss_pred HHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCCHH-HHHHHHhcCCCCCeeecccCc
Q psy9585 112 NILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFITDQ-SLKALADGCRNLTHINISWCI 182 (189)
Q Consensus 112 ~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~~~-~l~~l~~~~~~L~~L~l~~c~ 182 (189)
+.+...+++|+.|+|++ +.++. ..+..+...+++|+.|+|++ ..+++. .+..+. .. +|++|++.+++
T Consensus 163 ~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGNS 231 (267)
T ss_dssp HHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTST
T ss_pred HHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCCc
Confidence 44446789999999999 45654 23334455699999999998 667653 333332 23 89999999985
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.23 E-value=0.00028 Score=50.97 Aligned_cols=85 Identities=20% Similarity=0.136 Sum_probs=52.4
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|.++++ .++..... ....+++|++|+|+++ .++. ....+...+++|++|+|+++ .++...... ...+++|
T Consensus 57 ~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L 130 (220)
T 2v9t_B 57 KLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYGN-KITE-LPKSLFEGLFSLQLLLLNAN-KINCLRVDA-FQDLHNL 130 (220)
T ss_dssp TCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTC
T ss_pred CCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCCC-cCCc-cCHhHccCCCCCCEEECCCC-CCCEeCHHH-cCCCCCC
Confidence 4899999885 33322111 2336788999999884 4542 11122345789999999884 354322222 2347889
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 131 ~~L~L~~N-~l~ 141 (220)
T 2v9t_B 131 NLLSLYDN-KLQ 141 (220)
T ss_dssp CEEECCSS-CCS
T ss_pred CEEECCCC-cCC
Confidence 99999888 444
No 119
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.22 E-value=0.0033 Score=54.55 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=45.6
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHH------HcCCCCCEEecCCCCCCCHHHHHH-
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALS------KHCAKLQRLDLASCSFITDQSLKA- 165 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~------~~~~~L~~L~L~~c~~i~~~~l~~- 165 (189)
+|+.|.++++..... +......+++|+.|+|+++..++. .....+. ..+++|++|+|+++. ++ .+..
T Consensus 492 ~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~ 566 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPAS 566 (876)
T ss_dssp TCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCH
T ss_pred CCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCCh
Confidence 488888877532221 112233677788888877533554 2222221 234577777777743 54 2222
Q ss_pred -HHhcCCCCCeeecccC
Q psy9585 166 -LADGCRNLTHINISWC 181 (189)
Q Consensus 166 -l~~~~~~L~~L~l~~c 181 (189)
....+++|++|++++|
T Consensus 567 ~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp HHHTTCTTCCEEECTTS
T ss_pred hhhhcCCCCCEEECCCC
Confidence 2334677777777776
No 120
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.20 E-value=0.00025 Score=58.54 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=53.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|++|+++++. +..... .....+++|++|+++++ .++...... ...+++|++|+|+++. ++......+ ..+++|
T Consensus 58 ~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-i~~l~~~~~-~~l~~L 131 (606)
T 3t6q_A 58 NLTFLDLTRCQ-IYWIHE-DTFQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQTG-ISSIDFIPL-HNQKTL 131 (606)
T ss_dssp TCSEEECTTCC-CCEECT-TTTTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTSC-CSCGGGSCC-TTCTTC
T ss_pred cceEEECCCCc-cceeCh-hhccCccccCeeeCCCC-cccccChhh-hcccccccEeeccccC-cccCCcchh-ccCCcc
Confidence 48899998863 332111 12337889999999885 444221112 3458899999999854 554222222 458899
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|++++| .++
T Consensus 132 ~~L~L~~n-~l~ 142 (606)
T 3t6q_A 132 ESLYLGSN-HIS 142 (606)
T ss_dssp CEEECCSS-CCC
T ss_pred cEEECCCC-ccc
Confidence 99999998 444
No 121
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.16 E-value=0.00031 Score=53.68 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=32.4
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
.+++|+.|+++++ .++...... ...+++|++|+|+++. ++ .+..-...+++|++|+++++ .++
T Consensus 215 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N-~l~ 277 (332)
T 2ft3_A 215 RYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNNK-LS--RVPAGLPDLKLLQVVYLHTN-NIT 277 (332)
T ss_dssp TCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSSC-CC--BCCTTGGGCTTCCEEECCSS-CCC
T ss_pred CCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCCc-Ce--ecChhhhcCccCCEEECCCC-CCC
Confidence 4566777777663 333211111 2346677777777643 43 11111234667777777766 344
No 122
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.14 E-value=0.00032 Score=57.94 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=66.4
Q ss_pred CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585 65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143 (189)
Q Consensus 65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 143 (189)
..++.++++.... .+....+ ..+. +|++|+++++. ++..... ....+++|++|+++++ .++.-.... ...
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~----~~l~-~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~i~~l~~~~-~~~ 127 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTF----QSQH-RLDTLVLTANP-LIFMAET-ALSGPKALKHLFFIQT-GISSIDFIP-LHN 127 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTT----TTCT-TCCEEECTTCC-CSEECTT-TTSSCTTCCEEECTTS-CCSCGGGSC-CTT
T ss_pred ccceEEECCCCccceeChhhc----cCcc-ccCeeeCCCCc-ccccChh-hhcccccccEeecccc-CcccCCcch-hcc
Confidence 4567778765421 1111112 2344 49999999863 3322111 2337899999999995 455422222 345
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
+++|++|+|+++. ++...+..+.. +++|++|+++++ .++
T Consensus 128 l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n-~l~ 166 (606)
T 3t6q_A 128 QKTLESLYLGSNH-ISSIKLPKGFP-TEKLKVLDFQNN-AIH 166 (606)
T ss_dssp CTTCCEEECCSSC-CCCCCCCTTCC-CTTCCEEECCSS-CCC
T ss_pred CCcccEEECCCCc-ccccCcccccC-CcccCEEEcccC-ccc
Confidence 8999999999954 54322233333 899999999998 444
No 123
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.14 E-value=0.00027 Score=56.44 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=29.3
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|++|+|+++ .++.-. ......+++|++|+|++|..++.-.... ..++++|++|++++|
T Consensus 145 ~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 145 YLSKLRELWLRNN-PIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC 206 (452)
T ss_dssp SCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS
T ss_pred ccCCCCEEECCCC-CcceeC-HhHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC
Confidence 4556666666653 233111 1112235666666666554443211111 223566677776666
No 124
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=96.08 E-value=0.00052 Score=53.63 Aligned_cols=89 Identities=10% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHh
Q psy9585 89 RRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALAD 168 (189)
Q Consensus 89 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~ 168 (189)
...+. |+.|+++++ .+++.... ....+++|++|+++++ .++.... .....+++|++|+|+++. ++.-. ..+..
T Consensus 66 ~~l~~-L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~-~~~~~ 138 (390)
T 3o6n_A 66 DSFRQ-VELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPP-HVFQNVPLLTVLVLERND-LSSLP-RGIFH 138 (390)
T ss_dssp HHCCC-CSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTT
T ss_pred ccccc-CcEEECCCC-cccccChh-hccCCCCcCEEECCCC-CCCcCCH-HHhcCCCCCCEEECCCCc-cCcCC-HHHhc
Confidence 34454 999999885 34332211 2236789999999985 4543221 223458999999999854 55211 12234
Q ss_pred cCCCCCeeecccCcCcC
Q psy9585 169 GCRNLTHINISWCINIT 185 (189)
Q Consensus 169 ~~~~L~~L~l~~c~~lt 185 (189)
.+++|++|++++| .++
T Consensus 139 ~l~~L~~L~L~~n-~l~ 154 (390)
T 3o6n_A 139 NTPKLTTLSMSNN-NLE 154 (390)
T ss_dssp TCTTCCEEECCSS-CCC
T ss_pred CCCCCcEEECCCC-ccC
Confidence 5889999999998 344
No 125
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.05 E-value=0.00025 Score=60.48 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=38.2
Q ss_pred CccEEeecCCCCCCHHHHH-HHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHH--HHhcC
Q psy9585 94 FLRQISLRGCQSMTDNSLN-ILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKA--LADGC 170 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~--l~~~~ 170 (189)
+|++|+++++. ++..... .....+++|++|+++++. ++......+...+++|++|+|+++. +++..... +..++
T Consensus 101 ~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 101 SLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGC 177 (768)
T ss_dssp TCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCC
T ss_pred CCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccC
Confidence 46777776642 2211111 022356777777777642 2211111111345666666666643 43222111 12335
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
++|++|++++|
T Consensus 178 ~~L~~L~Ls~n 188 (768)
T 3rgz_A 178 GELKHLAISGN 188 (768)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECCCC
Confidence 55555555554
No 126
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.04 E-value=0.00087 Score=54.98 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=5.8
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|++|+++++
T Consensus 472 l~~L~~L~L~~N 483 (562)
T 3a79_B 472 LQALQELNVASN 483 (562)
T ss_dssp SCCCSEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 444555555444
No 127
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.03 E-value=0.0002 Score=61.79 Aligned_cols=111 Identities=16% Similarity=0.040 Sum_probs=63.9
Q ss_pred CCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585 64 GSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143 (189)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 143 (189)
+..++.++++.. .++...... ..... +|+.|+++++.....-. ......+++|++|+|+++ .++...... ...
T Consensus 23 p~~l~~LdLs~N--~i~~i~~~~-~~~l~-~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N-~l~~~~p~~-~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFN--YIRTVTASS-FPFLE-QLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSS-KIYFLHPDA-FQG 95 (844)
T ss_dssp CTTCCEEEEESC--CCCEECSSS-CSSCC-SCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTC-CCCEECTTS-SCS
T ss_pred CCCcCEEECCCC--cCCccChhH-Ccccc-cCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCC-cCcccCHhH-ccC
Confidence 455677777643 222110000 12233 49999998864332211 112247889999999985 454322222 345
Q ss_pred CCCCCEEecCCCCCCCHHHHHH-HHhcCCCCCeeecccCc
Q psy9585 144 CAKLQRLDLASCSFITDQSLKA-LADGCRNLTHINISWCI 182 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~-l~~~~~~L~~L~l~~c~ 182 (189)
+++|++|+|++|. +++..+.. ....+++|++|++++|.
T Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 96 LFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp CSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred CcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc
Confidence 8999999999854 54322221 13458899999999983
No 128
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=95.96 E-value=0.001 Score=54.53 Aligned_cols=10 Identities=0% Similarity=0.099 Sum_probs=5.3
Q ss_pred CCCeeecccC
Q psy9585 172 NLTHINISWC 181 (189)
Q Consensus 172 ~L~~L~l~~c 181 (189)
+|++|++++|
T Consensus 451 ~L~~L~L~~N 460 (562)
T 3a79_B 451 KVKVLDLHNN 460 (562)
T ss_dssp TCSEEECCSS
T ss_pred cCCEEECCCC
Confidence 4555555554
No 129
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.94 E-value=0.00056 Score=55.33 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=7.8
Q ss_pred cCCCCCeeecccC
Q psy9585 169 GCRNLTHINISWC 181 (189)
Q Consensus 169 ~~~~L~~L~l~~c 181 (189)
.+++|+.|++++|
T Consensus 212 ~l~~L~~L~Ls~N 224 (487)
T 3oja_A 212 SAAGVTWISLRNN 224 (487)
T ss_dssp GGTTCSEEECTTS
T ss_pred CCCCccEEEecCC
Confidence 3556666666665
No 130
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.94 E-value=0.00058 Score=56.56 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=47.8
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++ .++... ..+...+++|+.|+|+++ .++...... ...+++|++|+|+++. ++... ...+++|
T Consensus 124 ~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L 194 (597)
T 3oja_B 124 LLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNR-LTHVD----LSLIPSL 194 (597)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTSC-CSBCC----GGGCTTC
T ss_pred CCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCCC-CCCcC----hhhhhhh
Confidence 4888888886 333111 112346788888888885 444322112 3357888888888843 54322 2346778
Q ss_pred CeeecccC
Q psy9585 174 THINISWC 181 (189)
Q Consensus 174 ~~L~l~~c 181 (189)
+.|+++++
T Consensus 195 ~~L~l~~n 202 (597)
T 3oja_B 195 FHANVSYN 202 (597)
T ss_dssp SEEECCSS
T ss_pred hhhhcccC
Confidence 88888776
No 131
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=95.94 E-value=0.00045 Score=52.02 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=30.9
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|+.|+|+++ .++.- ...+...+++|++|+|+++ .++.-. ..+...+++|++|+++++
T Consensus 122 ~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 122 GLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCC
Confidence 4566666666663 33321 1111234566777777663 343111 112234667777777776
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.93 E-value=0.00033 Score=54.38 Aligned_cols=85 Identities=18% Similarity=0.063 Sum_probs=53.2
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|.++++ .++...-. ....+++|+.|+|+++ .++.-. ......+++|++|+|+++ .++...... ...+++|
T Consensus 65 ~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L 138 (361)
T 2xot_A 65 NLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSN-HLHTLD-EFLFSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQL 138 (361)
T ss_dssp TCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTC
T ss_pred ccCEEECCCC-cCCccChh-hccCCCCCCEEECCCC-cCCcCC-HHHhCCCcCCCEEECCCC-cccEECHHH-hCCcccC
Confidence 4889999875 33322111 2236789999999884 454311 112345789999999984 455322222 3347899
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 139 ~~L~L~~N-~l~ 149 (361)
T 2xot_A 139 QKLYLSQN-QIS 149 (361)
T ss_dssp CEEECCSS-CCC
T ss_pred CEEECCCC-cCC
Confidence 99999988 454
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.92 E-value=0.001 Score=56.49 Aligned_cols=83 Identities=23% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585 93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN 172 (189)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~ 172 (189)
.+|+.|+|+++.. .. +..-...+++|++|+|+++ .++ .+..-...+++|++|+|+++. ++ .+..-...+++
T Consensus 224 ~~L~~L~Ls~n~l-~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~ 294 (727)
T 4b8c_D 224 QLWHALDLSNLQI-FN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCFQ 294 (727)
T ss_dssp CCCCEEECTTSCC-SC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGTT
T ss_pred CCCcEEECCCCCC-CC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCCC
Confidence 3599999988642 21 1111227889999999985 565 222223568999999999944 65 22222345899
Q ss_pred CCeeecccCcCcC
Q psy9585 173 LTHINISWCINIT 185 (189)
Q Consensus 173 L~~L~l~~c~~lt 185 (189)
|++|+|++| .++
T Consensus 295 L~~L~L~~N-~l~ 306 (727)
T 4b8c_D 295 LKYFYFFDN-MVT 306 (727)
T ss_dssp CSEEECCSS-CCC
T ss_pred CCEEECCCC-CCC
Confidence 999999998 454
No 134
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=95.91 E-value=0.00095 Score=55.88 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585 65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143 (189)
Q Consensus 65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 143 (189)
..++.++++.... .+....+ ..+.. |+.|+++++. ++... ......+++|++|+++++ .++.-.... ...
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~----~~l~~-L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~ 119 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELC----QKLPM-LKVLNLQHNE-LSQLS-DKTFAFCTNLTELHLMSN-SIQKIKNNP-FVK 119 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHH----HHCTT-CCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCCCCSCT-TTT
T ss_pred CcCcEEECCCCccCccCHHHH----hcccC-cCEEECCCCc-cCccC-hhhhccCCCCCEEECCCC-ccCccChhH-ccc
Confidence 4567888875421 1222222 34454 9999999863 33211 112337899999999985 343211112 345
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
+++|++|+|+++. ++......+ ..+++|++|++++| .++
T Consensus 120 l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~ 158 (680)
T 1ziw_A 120 QKNLITLDLSHNG-LSSTKLGTQ-VQLENLQELLLSNN-KIQ 158 (680)
T ss_dssp CTTCCEEECCSSC-CSCCCCCSS-SCCTTCCEEECCSS-CCC
T ss_pred cCCCCEEECCCCc-ccccCchhh-cccccCCEEEccCC-ccc
Confidence 8999999999964 443222222 35899999999998 344
No 135
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=95.88 E-value=0.0028 Score=55.02 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=47.2
Q ss_pred CccEEeecCCCCCCHHHHHH-HH------HcCCCcceEecccCCCCCHHHHHH--HHHcCCCCCEEecCCCCCCCHHHHH
Q psy9585 94 FLRQISLRGCQSMTDNSLNI-LA------QYCNNVEDINLNLCKKLTDATSLA--LSKHCAKLQRLDLASCSFITDQSLK 164 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~-l~------~~~~~L~~L~l~~~~~i~~~~~~~--l~~~~~~L~~L~L~~c~~i~~~~l~ 164 (189)
+|+.|+++++..++...+.. +. ..+++|+.|+|+++ .++ .+.. ....+++|++|+|+++. ++ .+.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp 589 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNK-VR--HLE 589 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSC-CC--BCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCC-cc--cch
Confidence 48888888864355512221 21 23458888888874 454 2322 33457788888888743 54 222
Q ss_pred HHHhcCCCCCeeecccC
Q psy9585 165 ALADGCRNLTHINISWC 181 (189)
Q Consensus 165 ~l~~~~~~L~~L~l~~c 181 (189)
. ...+++|++|++++|
T Consensus 590 ~-~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 590 A-FGTNVKLTDLKLDYN 605 (876)
T ss_dssp C-CCTTSEESEEECCSS
T ss_pred h-hcCCCcceEEECcCC
Confidence 2 234567777777766
No 136
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.86 E-value=0.00054 Score=56.51 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=64.7
Q ss_pred CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585 65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143 (189)
Q Consensus 65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 143 (189)
..++.++++...- .+.+..+ .... +|++|+|+++. ++.-. ......+++|++|+++++ .++.-. ......
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f----~~L~-~L~~L~Ls~N~-l~~l~-~~~f~~L~~L~~L~Ls~N-~l~~l~-~~~~~~ 146 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAY----QSLS-HLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVET-NLASLE-NFPIGH 146 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTT----TTCT-TCCEEECTTCC-CCEEC-GGGGTTCTTCCEEECTTS-CCCCST-TCCCTT
T ss_pred CCCCEEECCCCcCCCcChhHh----cCCC-CCCEEEccCCc-CCCCC-HHHhcCCCCCCEEECCCC-cCCCCC-hhhhhc
Confidence 4567788875421 1222222 2234 49999999863 33211 112347889999999985 444211 111345
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
+++|++|+|+++. ++...+......+++|++|+++++
T Consensus 147 L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 147 LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence 8999999999843 543223334455889999999988
No 137
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.85 E-value=0.00077 Score=54.55 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=29.0
Q ss_pred cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|+.|+|+++ .++......+...+++|++|+|+++. +++. ..+. .+++|++|++++|
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~~~-~l~~L~~L~Ls~N 201 (487)
T 3oja_A 142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQV-VFAKLKTLDLSSN 201 (487)
T ss_dssp GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECCC-CCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc--cccc-cCCCCCEEECCCC
Confidence 3455666666553 34433333333345666666666633 3321 1111 2566666666665
No 138
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=95.85 E-value=0.00033 Score=60.40 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
+++|++|+|+++. ++.........++++|++|+++++
T Consensus 122 L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 122 LKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence 4555555555532 322111111223455555555554
No 139
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=95.84 E-value=0.0032 Score=52.57 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=60.3
Q ss_pred HcCCCccEEeecCCCCCCHH----------------HHHHHHH--cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEe
Q psy9585 90 RCGGFLRQISLRGCQSMTDN----------------SLNILAQ--YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLD 151 (189)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~----------------~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~ 151 (189)
... +|++|+++++. ++.. .+..... .+++|++|++++|. +... +......+++|++|+
T Consensus 204 ~l~-~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLT-KLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTK-LPTFLKALPEMQLIN 279 (636)
T ss_dssp GCT-TCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSS-CCTTTTTCSSCCEEE
T ss_pred ccc-CCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCcc-ChHHHhcCCCCCEEE
Confidence 344 49999999964 5542 0222233 68899999999964 3321 122234589999999
Q ss_pred cCCCCCCCH-HHHHHHHh-----cCCCCCeeecccCcCcC
Q psy9585 152 LASCSFITD-QSLKALAD-----GCRNLTHINISWCINIT 185 (189)
Q Consensus 152 L~~c~~i~~-~~l~~l~~-----~~~~L~~L~l~~c~~lt 185 (189)
|+++..++. .....+.. .+++|++|++++| .++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~ 318 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK 318 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC
Confidence 999655876 33333433 3589999999998 454
No 140
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=95.76 E-value=0.00066 Score=51.09 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=51.3
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++. ++ .+......+++|+.|+++++ .++.-.. .....+++|++|+|+++ .++.-. ......+++|
T Consensus 78 ~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 150 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLP-PGLLTPTPKL 150 (290)
T ss_dssp TCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTC
T ss_pred cCCEEECCCCc-CC--cCchhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccC-hhhcccccCC
Confidence 48888888753 32 12222346788999999884 4542111 12345788999999884 354211 1123457889
Q ss_pred CeeecccCcCcC
Q psy9585 174 THINISWCINIT 185 (189)
Q Consensus 174 ~~L~l~~c~~lt 185 (189)
++|+++++ .++
T Consensus 151 ~~L~L~~N-~l~ 161 (290)
T 1p9a_G 151 EKLSLANN-NLT 161 (290)
T ss_dssp CEEECTTS-CCS
T ss_pred CEEECCCC-cCC
Confidence 99999988 444
No 141
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=95.58 E-value=0.00018 Score=52.35 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=61.2
Q ss_pred CCcceeeccCCC--CCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585 65 SNWSRIDLFNFQ--TDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142 (189)
Q Consensus 65 ~~~~~~~l~~~~--~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 142 (189)
..++.++++... ..+....+ ..++ +|++|.++++..++.... .....+++|+.|+++++ .++. +.. ..
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f----~~l~-~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n-~l~~--lp~-~~ 124 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSF----YNLS-KVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNT-GLKM--FPD-LT 124 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTE----ESCT-TCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEE-CCCS--CCC-CT
T ss_pred CCCcEEeCCCCCCcceeCHhHc----CCCc-CCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCC-CCcc--ccc-cc
Confidence 456777776442 11221111 2234 499999986334432211 12336789999999885 3442 222 34
Q ss_pred cCCCCC---EEecCCCCCCCHHHHHHHHhcCCCCC-eeecccC
Q psy9585 143 HCAKLQ---RLDLASCSFITDQSLKALADGCRNLT-HINISWC 181 (189)
Q Consensus 143 ~~~~L~---~L~L~~c~~i~~~~l~~l~~~~~~L~-~L~l~~c 181 (189)
.+++|+ +|+++++..++.-.... ...+++|+ +|+++++
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNN 166 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSC
T ss_pred cccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCC
Confidence 577787 99999863454322122 23478999 9999887
No 142
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=95.54 E-value=0.0082 Score=48.09 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=65.3
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC 144 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 144 (189)
..++.++++... +++. .. ...+. +|++|+++++. ++... ...+++|++|+++++ .++.-. ...+
T Consensus 42 ~~L~~L~Ls~n~--l~~~--~~-l~~l~-~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l 105 (457)
T 3bz5_A 42 ATLTSLDCHNSS--ITDM--TG-IEKLT-GLTKLICTSNN-ITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPL 105 (457)
T ss_dssp TTCCEEECCSSC--CCCC--TT-GGGCT-TCSEEECCSSC-CSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTC
T ss_pred CCCCEEEccCCC--cccC--hh-hcccC-CCCEEEccCCc-CCeEc----cccCCCCCEEECcCC-CCceee----cCCC
Confidence 445677776542 2221 11 23344 49999999863 44321 347889999999985 455422 3458
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585 145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~ 186 (189)
++|++|+|+++. ++.- . ...+++|++|++++| .++.
T Consensus 106 ~~L~~L~L~~N~-l~~l--~--~~~l~~L~~L~l~~N-~l~~ 141 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKL--D--VSQNPLLTYLNCARN-TLTE 141 (457)
T ss_dssp TTCCEEECCSSC-CSCC--C--CTTCTTCCEEECTTS-CCSC
T ss_pred CcCCEEECCCCc-CCee--c--CCCCCcCCEEECCCC-ccce
Confidence 999999999954 5542 2 345899999999998 4543
No 143
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=95.39 E-value=0.0065 Score=48.71 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=65.7
Q ss_pred CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585 65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC 144 (189)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 144 (189)
..++.++++... ++... ..... +|+.|+++++. ++... ...+++|++|+++++ .++.- . ...+
T Consensus 64 ~~L~~L~Ls~n~--l~~~~----~~~l~-~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~N-~l~~l--~--~~~l 126 (457)
T 3bz5_A 64 TGLTKLICTSNN--ITTLD----LSQNT-NLTYLACDSNK-LTNLD----VTPLTKLTYLNCDTN-KLTKL--D--VSQN 126 (457)
T ss_dssp TTCSEEECCSSC--CSCCC----CTTCT-TCSEEECCSSC-CSCCC----CTTCTTCCEEECCSS-CCSCC--C--CTTC
T ss_pred CCCCEEEccCCc--CCeEc----cccCC-CCCEEECcCCC-Cceee----cCCCCcCCEEECCCC-cCCee--c--CCCC
Confidence 456777776542 32211 12334 59999999864 43321 347899999999995 55542 1 4568
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
++|++|+++++. ++.- . ...+++|++|++++|..++
T Consensus 127 ~~L~~L~l~~N~-l~~l--~--l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 127 PLLTYLNCARNT-LTEI--D--VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp TTCCEEECTTSC-CSCC--C--CTTCTTCCEEECTTCSCCC
T ss_pred CcCCEEECCCCc-ccee--c--cccCCcCCEEECCCCCccc
Confidence 999999999854 5542 1 3458999999999986554
No 144
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=95.36 E-value=0.0046 Score=46.91 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH
Q psy9585 82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ 161 (189)
Q Consensus 82 ~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~ 161 (189)
..+..+.+.++ +|++|+++++ .++..... ....+++|+.|+++++ .++... . ...+++|++|+|+++. ++.
T Consensus 24 ~~~~~~~~~~~-~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~- 94 (317)
T 3o53_A 24 QALASLRQSAW-NVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNY-VQE- 94 (317)
T ss_dssp HHHHHHHTTGG-GCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSSE-EEE-
T ss_pred hhHHHHhccCC-CCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCCc-ccc-
Confidence 34445544444 4999999986 44433222 2347899999999985 444211 1 4568999999999954 543
Q ss_pred HHHHHHhcCCCCCeeecccCcCcC
Q psy9585 162 SLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 162 ~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
+ ..+++|++|++++| .++
T Consensus 95 ----l-~~~~~L~~L~l~~n-~l~ 112 (317)
T 3o53_A 95 ----L-LVGPSIETLHAANN-NIS 112 (317)
T ss_dssp ----E-EECTTCCEEECCSS-CCS
T ss_pred ----c-cCCCCcCEEECCCC-ccC
Confidence 1 13589999999998 444
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.86 E-value=0.0035 Score=43.42 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=42.4
Q ss_pred CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
++|+.|+|++. .++.-. ......+++|++|+|++ ..++.-. ..+...+++|++|+++++ .++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i~-~~~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNS-NKLTAIP-TGVFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSS-CCC
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCC-CCCCccC-hhHhCCcchhhEEECCCC-ccc
Confidence 78999999984 555321 22234589999999999 4465311 122345899999999998 444
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.79 E-value=0.002 Score=49.46 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=46.4
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|.|++...++...- ..+..+++|+.|+|++. .++.-. ......+++|++|+|++ ..++.-. ..+.... +|
T Consensus 32 ~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~-N~l~~~~-~~~~~~~-~L 105 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSF-NALESLS-WKTVQGL-SL 105 (347)
T ss_dssp CCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCS-SCCSCCC-STTTCSC-CC
T ss_pred CeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCC-CccceeC-HHHcccC-Cc
Confidence 388888875223332111 11236788888888884 555311 12234578888888887 4454211 1122222 38
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
+.|++.++.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 888888763
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.72 E-value=0.004 Score=42.87 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=50.0
Q ss_pred ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT 174 (189)
Q Consensus 95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~ 174 (189)
.+.|++++.. ++. +.. .-.++|+.|+|++. .++.-. ......+++|++|+|++ ..++.-. ......+++|+
T Consensus 11 ~~~l~~s~n~-l~~--ip~--~~~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~-N~l~~l~-~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKS-LAS--VPT--GIPTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDN-NQLTVLP-AGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSC-CSS--CCS--CCCTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCS-SCCCCCC-TTTTTTCTTCC
T ss_pred CCEEEeCCCC-cCc--cCc--cCCCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCC-CCcCccC-hhhccCCCCCC
Confidence 5677776642 221 110 12378999999984 555321 12234589999999999 4465321 12234589999
Q ss_pred eeecccCcCcC
Q psy9585 175 HINISWCINIT 185 (189)
Q Consensus 175 ~L~l~~c~~lt 185 (189)
+|+++++ .++
T Consensus 82 ~L~L~~N-~l~ 91 (170)
T 3g39_A 82 QLSLNDN-QLK 91 (170)
T ss_dssp EEECCSS-CCC
T ss_pred EEECCCC-ccC
Confidence 9999998 454
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.61 E-value=0.0043 Score=47.55 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=45.4
Q ss_pred HHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 115 AQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 115 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
+..+++|+.|+|++...++.-.. .....+++|++|+|++ ..++...-. ...++++|++|+|+++ .++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~-~~~~l~~L~~L~l~~N-~l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVK-SGLRFVAPD-AFHFTPRLSRLNLSFN-ALE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCS-SCCCEECTT-GGGSCSCCCEEECCSS-CCS
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCC-CccceeCHH-HhcCCcCCCEEeCCCC-ccc
Confidence 44677899999986345553211 1234589999999999 456532222 3346899999999998 454
No 149
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=94.47 E-value=0.018 Score=48.03 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=41.0
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
+|+.|+++++ .++. +...+++|+.|+++++ .++. + ...+++|++|+|+++ .++ .+..-...+++|
T Consensus 222 ~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N-~L~~--l---p~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~~L 286 (622)
T 3g06_A 222 GLKELIVSGN-RLTS-----LPVLPSELKELMVSGN-RLTS--L---PMLPSGLLSLSVYRN-QLT--RLPESLIHLSSE 286 (622)
T ss_dssp TCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSS-CCC--SCCGGGGGSCTT
T ss_pred CCCEEEccCC-ccCc-----CCCCCCcCcEEECCCC-CCCc--C---CcccccCcEEeCCCC-CCC--cCCHHHhhcccc
Confidence 3566666554 2221 1134567777777764 3431 1 114677778888774 354 222223457888
Q ss_pred CeeecccCc
Q psy9585 174 THINISWCI 182 (189)
Q Consensus 174 ~~L~l~~c~ 182 (189)
+.|++++|+
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 888888773
No 150
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=94.26 E-value=0.0024 Score=48.73 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=46.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc----
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG---- 169 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~---- 169 (189)
+|+.|+++++ .++..... ....+++|+.|+++++ .++ .+..-...+++|++|+|+++ .++......+...
T Consensus 218 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 218 KLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNN-KLS--RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGV 291 (332)
T ss_dssp TCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSS-CCC--BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCS
T ss_pred CCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCC-cCe--ecChhhhcCccCCEEECCCC-CCCccChhHcccccccc
Confidence 3666666664 22221111 1236788888888875 444 22222345788888888873 3554333332221
Q ss_pred -CCCCCeeecccCc
Q psy9585 170 -CRNLTHINISWCI 182 (189)
Q Consensus 170 -~~~L~~L~l~~c~ 182 (189)
.++|+.|++++++
T Consensus 292 ~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 292 KRAYYNGISLFNNP 305 (332)
T ss_dssp SSCCBSEEECCSSS
T ss_pred ccccccceEeecCc
Confidence 3567788887774
No 151
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=94.14 E-value=0.0066 Score=46.13 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=21.4
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.+++|++|+|+++. +++.....+ ..+++|++|++++|
T Consensus 214 ~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N 250 (330)
T 1xku_A 214 GLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNN 250 (330)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCC
Confidence 46677777777633 443222222 33677777777777
No 152
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=93.37 E-value=0.046 Score=45.66 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=6.0
Q ss_pred CCCCeeecccC
Q psy9585 171 RNLTHINISWC 181 (189)
Q Consensus 171 ~~L~~L~l~~c 181 (189)
++|++|++++|
T Consensus 141 ~~L~~L~Ls~N 151 (622)
T 3g06_A 141 PGLQELSVSDN 151 (622)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 45555555555
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.22 E-value=0.017 Score=43.92 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHcCCCccEEeecCC--CCCCHHHHHHHHHcCCCcceEecccC-CCCCHHHHHHHHHcCCCCC-EEecCC
Q psy9585 79 VEGPVLENISRRCGGFLRQISLRGC--QSMTDNSLNILAQYCNNVEDINLNLC-KKLTDATSLALSKHCAKLQ-RLDLAS 154 (189)
Q Consensus 79 ~~~~~l~~l~~~~~~~L~~L~l~~~--~~~~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~~~~l~~~~~~L~-~L~L~~ 154 (189)
+.......+...|.+ |++|++.++ ..+.+.+ ...|++|+++.|.+- ..+.+.+ +..|++|+ .|.|.+
T Consensus 213 l~~~~~~~l~~~~~~-L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 213 LDNADFKLIRDYMPN-LVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHNLKTIGQRV----FSNCGRLAGTLELPA 283 (329)
T ss_dssp CCHHHHHHHHHHCTT-CCEEECTTBCCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEEECT
T ss_pred ecHHHHHHHHHhcCC-CeEEECCCCCcceecHhh----hhCCCCCCEEECCcccceehHHH----hhCChhccEEEEEcc
Confidence 334444444445554 777777762 2222222 236777777777651 1122211 33477777 777765
Q ss_pred CCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 155 CSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 155 c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
.++.-+-.+ ..+|++|+.|++.+.
T Consensus 284 --~l~~I~~~a-F~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 284 --SVTAIEFGA-FMGCDNLRYVLATGD 307 (329)
T ss_dssp --TCCEECTTT-TTTCTTEEEEEECSS
T ss_pred --cceEEchhh-hhCCccCCEEEeCCC
Confidence 232111122 335788888887544
No 154
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=91.84 E-value=0.048 Score=45.03 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=13.9
Q ss_pred CcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585 120 NVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS 154 (189)
Q Consensus 120 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~ 154 (189)
+|+.|+|+++ .++. +.. .+++|++|+|++
T Consensus 121 ~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 121 SLKHLDVDNN-QLTM--LPE---LPALLEYINADN 149 (571)
T ss_dssp TCCEEECCSS-CCSC--CCC---CCTTCCEEECCS
T ss_pred CCCEEECCCC-cCCC--CCC---cCccccEEeCCC
Confidence 5666666553 3332 111 345555555555
No 155
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=91.69 E-value=0.05 Score=43.49 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=15.5
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585 145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181 (189)
Q Consensus 145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c 181 (189)
++|++|+++++. ++. +.. ...+++|++|++++|
T Consensus 173 ~~L~~L~L~~n~-l~~--l~~-~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 173 PSLEFIAAGNNQ-LEE--LPE-LQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSS
T ss_pred ccccEEECcCCc-CCc--Ccc-ccCCCCCCEEECCCC
Confidence 355555555532 322 112 223556666666655
No 156
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=91.41 E-value=0.043 Score=45.36 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=6.2
Q ss_pred CCCcceEeccc
Q psy9585 118 CNNVEDINLNL 128 (189)
Q Consensus 118 ~~~L~~L~l~~ 128 (189)
+++|+.|++++
T Consensus 99 l~~L~~L~Ls~ 109 (571)
T 3cvr_A 99 PASLEYLDACD 109 (571)
T ss_dssp CTTCCEEECCS
T ss_pred cCCCCEEEccC
Confidence 45555555555
No 157
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=90.92 E-value=0.068 Score=42.71 Aligned_cols=12 Identities=25% Similarity=-0.064 Sum_probs=6.5
Q ss_pred CCCCCeeecccC
Q psy9585 170 CRNLTHINISWC 181 (189)
Q Consensus 170 ~~~L~~L~l~~c 181 (189)
+++|++|++++|
T Consensus 236 l~~L~~L~l~~N 247 (454)
T 1jl5_A 236 LPFLTTIYADNN 247 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 455555555554
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=90.36 E-value=0.11 Score=39.42 Aligned_cols=80 Identities=10% Similarity=0.251 Sum_probs=50.5
Q ss_pred CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL 173 (189)
Q Consensus 94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L 173 (189)
++..+.+.+ .+....+..+...|++|++++|.++ .++.-. ...+..|++|++|.|.+ . ++.-+-.+ ..+|++|
T Consensus 203 ~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~-n-i~~I~~~a-F~~~~~L 275 (329)
T 3sb4_A 203 DINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPH-N-LKTIGQRV-FSNCGRL 275 (329)
T ss_dssp GCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCT-T-CCEECTTT-TTTCTTC
T ss_pred ccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCc-c-cceehHHH-hhCChhc
Confidence 466666766 3566667777767999999999873 233211 11244588999999976 2 33211122 3458889
Q ss_pred C-eeeccc
Q psy9585 174 T-HINISW 180 (189)
Q Consensus 174 ~-~L~l~~ 180 (189)
+ .+.+.+
T Consensus 276 ~~~l~l~~ 283 (329)
T 3sb4_A 276 AGTLELPA 283 (329)
T ss_dssp CEEEEECT
T ss_pred cEEEEEcc
Confidence 8 888865
No 159
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=89.50 E-value=0.0044 Score=47.74 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=36.1
Q ss_pred CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585 93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN 172 (189)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~ 172 (189)
.++++|++++. .++.-. ......+++|++|+|+++...+. .-......+++|+++.+.++..++.-.-. ....+++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPN 105 (350)
T ss_dssp TTCSEEEEESC-CCSEEC-TTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTCCEECTT-SBCCCTT
T ss_pred CCCCEEEccCC-cCCCcC-HHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcccccCch-hhhhccc
Confidence 34777777664 332111 01123566777777776421110 00011223455554333322333311111 1233566
Q ss_pred CCeeecccC
Q psy9585 173 LTHINISWC 181 (189)
Q Consensus 173 L~~L~l~~c 181 (189)
|++|+++++
T Consensus 106 L~~L~l~~n 114 (350)
T 4ay9_X 106 LQYLLISNT 114 (350)
T ss_dssp CCEEEEEEE
T ss_pred ccccccccc
Confidence 666666655
No 160
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=70.50 E-value=0.21 Score=38.23 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCCcceEecccCCCCCHHHHH-HHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585 118 CNNVEDINLNLCKKLTDATSL-ALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT 185 (189)
Q Consensus 118 ~~~L~~L~l~~~~~i~~~~~~-~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt 185 (189)
.+++++|+|++ ..++. +. .....+++|++|+|+++...+.-. .....++++|.++.+.++.+++
T Consensus 29 ~~~l~~L~Ls~-N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 29 PRNAIELRFVL-TKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp CTTCSEEEEES-CCCSE--ECTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCCEEEccC-CcCCC--cCHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCccc
Confidence 35899999998 45652 21 123458999999999854222100 1123346777776555544443
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=64.53 E-value=2 Score=27.84 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=28.1
Q ss_pred CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHH
Q psy9585 119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKA 165 (189)
Q Consensus 119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~ 165 (189)
++|+.|+|++ +.++.-. ..++..+++|++|+|.+-...-|..+..
T Consensus 31 ~~l~~L~Ls~-N~l~~l~-~~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALP-PGLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp TTCSEEECTT-SCCSSCC-TTTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred cCCCEEECCC-CcCCccC-hhhhhhccccCEEEecCCCeeccCccHH
Confidence 4799999988 4554311 1224457899999999854444444433
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=63.47 E-value=2.7 Score=32.47 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=26.8
Q ss_pred cCCCcceEeccc-CCCCCHHHHHHHHHcCCCCCEEecCC-CCCCCHHHHHHHHhcCCCCCeeeccc
Q psy9585 117 YCNNVEDINLNL-CKKLTDATSLALSKHCAKLQRLDLAS-CSFITDQSLKALADGCRNLTHINISW 180 (189)
Q Consensus 117 ~~~~L~~L~l~~-~~~i~~~~~~~l~~~~~~L~~L~L~~-c~~i~~~~l~~l~~~~~~L~~L~l~~ 180 (189)
.|.+|+++.|.. ...+.+.+ ...|.+|+.+.|.. ...|.+. + ..+|++|+.+.+.+
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~---a-F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPES---A-FSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGG---G-GTTCTTCCEEEESS
T ss_pred CCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHh---H-hhCCCCCCEEEECC
Confidence 566666666643 12222222 23466666666643 2223321 1 23466666666543
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=56.57 E-value=2.8 Score=32.41 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=5.9
Q ss_pred CCCCCEEecCC
Q psy9585 144 CAKLQRLDLAS 154 (189)
Q Consensus 144 ~~~L~~L~L~~ 154 (189)
|++|+.+.+.+
T Consensus 356 C~~L~~i~~~~ 366 (394)
T 4gt6_A 356 CTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEEESS
T ss_pred CCCCCEEEECC
Confidence 55555555554
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=55.14 E-value=0.71 Score=36.19 Aligned_cols=10 Identities=0% Similarity=0.215 Sum_probs=5.6
Q ss_pred CCCeeecccC
Q psy9585 172 NLTHINISWC 181 (189)
Q Consensus 172 ~L~~L~l~~c 181 (189)
+|+.|.+.++
T Consensus 346 ~L~~l~l~~n 355 (401)
T 4fdw_A 346 GIKEVKVEGT 355 (401)
T ss_dssp CCCEEEECCS
T ss_pred CCCEEEEcCC
Confidence 5666655544
No 165
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=49.86 E-value=11 Score=19.65 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=19.3
Q ss_pred ccccchhhhcCCCCHHHHHHHHhcCC
Q psy9585 18 VFLEDEALINKKLPKELLLRIFSYLD 43 (189)
Q Consensus 18 ~~~~~~~~~~~~LP~~il~~I~~~L~ 43 (189)
.|..-+..-|..||.||...|++--.
T Consensus 12 lP~~VD~eVF~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 12 LPEGVDQEVFKQLPADIQEEILSGKS 37 (48)
T ss_dssp SCTTCCGGGTTTSCHHHHHHHTTCCC
T ss_pred CCCCCCHHHHHHCcHHHHHHHHhcch
Confidence 34445567799999999999987543
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=38.35 E-value=3.3 Score=32.01 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=26.7
Q ss_pred cCCCcceEeccc-CCCCCHHHHHHHHHcCCCCCEEecCC-CCCCCHHHHHHHHhcCCCCCeeeccc
Q psy9585 117 YCNNVEDINLNL-CKKLTDATSLALSKHCAKLQRLDLAS-CSFITDQSLKALADGCRNLTHINISW 180 (189)
Q Consensus 117 ~~~~L~~L~l~~-~~~i~~~~~~~l~~~~~~L~~L~L~~-c~~i~~~~l~~l~~~~~~L~~L~l~~ 180 (189)
.|.+|+++.|.. ...+.+.+ ...|.+|+.+.|.. ...|.+ .+ ..+|++|+.+.+..
T Consensus 318 ~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~l~~I~~---~a-F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLSLRKIGA---NA-FQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTTCCEECT---TT-BTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECccccEehH---HH-hhCCCCCCEEEECC
Confidence 455666666543 11222221 23466677666643 122222 12 23477777776643
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=29.24 E-value=6.4 Score=30.03 Aligned_cols=55 Identities=22% Similarity=0.391 Sum_probs=27.4
Q ss_pred cCCCcceEecccC--CCCCHHHHHHHHHcCCCCCEEecCC-CCCCCHHHHHHHHhcCCCCCeeecc
Q psy9585 117 YCNNVEDINLNLC--KKLTDATSLALSKHCAKLQRLDLAS-CSFITDQSLKALADGCRNLTHINIS 179 (189)
Q Consensus 117 ~~~~L~~L~l~~~--~~i~~~~~~~l~~~~~~L~~L~L~~-c~~i~~~~l~~l~~~~~~L~~L~l~ 179 (189)
.|++|+.+.+.+. ..+.+.+ ...|.+|+.+.|.. ...|.+. + ..+|.+|+.+.+.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~l~~I~~~---a-F~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTALKTIQVY---A-FKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTT---T-TTTCTTCCCCCCC
T ss_pred cccccccccccccccceehhhh----hcCCCCCCEEEcCccccEEHHH---H-hhCCCCCCEEEEC
Confidence 5666666666541 1222222 23467777777743 2333332 2 2346777776663
No 168
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=23.05 E-value=71 Score=22.00 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=29.0
Q ss_pred ccccccccccchhhhcCCCCHHHHHHHHhcCChhhhHH
Q psy9585 12 SNVLTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCR 49 (189)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~LP~~il~~I~~~L~~~~~~~ 49 (189)
.......+..+..+.+..||++....++..++..+...
T Consensus 7 ~~~~~~m~~dd~~dll~~l~~~~~~~~l~~l~~~e~~~ 44 (205)
T 3kxr_A 7 DLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQR 44 (205)
T ss_dssp CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHH
Confidence 34455556667788899999999999999998765433
Done!