RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9585
(189 letters)
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like. This is an F-box-like family.
Length = 47
Score = 62.5 bits (153), Expect = 7e-14
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL 72
LP E+LL+IFSYLD L R A V + W LA D S W R+ L
Sbjct: 3 DLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCL 46
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1. Amn1
has been functionally characterized in Saccharomyces
cerevisiae as a component of the Antagonist of MEN
pathway (AMEN). The AMEN network is activated by MEN
(mitotic exit network) via an active Cdc14, and in turn
switches off MEN. Amn1 constitutes one of the
alternative mechanisms by which MEN may be disrupted.
Specifically, Amn1 binds Tem1 (Termination of M-phase, a
GTPase that belongs to the RAS superfamily), and
disrupts its association with Cdc15, the primary
downstream target. Amn1 is a leucine-rich repeat (LRR)
protein, with 12 repeats in the S. cerevisiae ortholog.
As a negative regulator of the signal transduction
pathway MEN, overexpression of AMN1 slows the growth of
wild type cells. The function of the vertebrate members
of this family has not been determined experimentally,
they have fewer LRRs that determine the extent of this
model.
Length = 226
Score = 58.9 bits (143), Expect = 6e-11
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINL---NLCKKLTDATSLAL 140
L +++ C L+ + LR C+++TD+ + LA C ++ INL +TD + AL
Sbjct: 70 LIALAQSCPN-LQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSAL 128
Query: 141 SKHCAKLQRLDLASCSFITDQSLKALADGC-RNLTHINISWCINIT 185
K+C LQ + A C +TD+ + LA GC ++L ++++ C N+T
Sbjct: 129 GKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSLNNCRNLT 173
Score = 56.6 bits (137), Expect = 4e-10
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 76 QTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ--YCNNVEDINLNLCKKLT 133
+ + + R L + L C S L Q CN ++ + L K +
Sbjct: 11 LGQITQSNISQLLRILHSGLEWLELYMC----PISDPPLDQLSNCNKLKKLILPGSKLID 66
Query: 134 DATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINIS 179
D +AL++ C LQ LDL +C ITD + ALA C L IN+
Sbjct: 67 DEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLG 112
Score = 48.5 bits (116), Expect = 3e-07
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 87 ISRRCGGFLRQISL---RGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLAL-SK 142
++ C L+ I+L R +TD SL+ L + C ++ + C +TD L S
Sbjct: 99 LATNCP-KLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCD-VTDKGVWELASG 156
Query: 143 HCAKLQRLDLASCSFITDQSLKAL--ADGCRNLTHINISWCINIT 185
L+RL L +C +TDQS+ A+ ++ NL+ + C IT
Sbjct: 157 CSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLIT 201
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets.
Length = 41
Score = 42.4 bits (101), Expect = 2e-06
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
LP E+L I S LD L R +VS+ W L W
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFW 38
>gnl|CDD|201368 pfam00646, F-box, F-box domain. This domain is approximately 50
amino acids long, and is usually found in the
N-terminal half of a variety of proteins. Two motifs
that are commonly found associated with the F-box
domain are the leucine rich repeats (LRRs; pfam00560
and pfam07723) and the WD repeat (pfam00400). The F-box
domain has a role in mediating protein-protein
interactions in a variety of contexts, such as
polyubiquitination, transcription elongation,
centromere binding and translational repression.
Length = 48
Score = 41.0 bits (97), Expect = 9e-06
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL 72
LP +LLL I S LD L R + VSK W L W + L
Sbjct: 5 DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48
>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing)
subfamily.
Length = 26
Score = 35.5 bits (83), Expect = 6e-04
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 144 CAKLQRLDLASCSFITDQSLKALADG 169
C L+ LDL+ C+ ITD+ L+ALA G
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 29.3 bits (67), Expect = 0.12
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 170 CRNLTHINISWCINITENG 188
C NL +++S C NIT+ G
Sbjct: 1 CPNLRELDLSGCTNITDEG 19
Score = 26.6 bits (60), Expect = 0.88
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 95 LRQISLRGCQSMTDNSLNILAQY 117
LR++ L GC ++TD L LA+
Sbjct: 4 LRELDLSGCTNITDEGLQALAKG 26
>gnl|CDD|237775 PRK14642, PRK14642, hypothetical protein; Provisional.
Length = 197
Score = 29.4 bits (66), Expect = 0.84
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 84 LENISRRCGGFLR-QISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142
L I R GG LR I L T+ + Q+ VED C+K+T AL
Sbjct: 18 LVEIERSAGGLLRVTIDLP-WVPPTEGAPVGPEQFVT-VED-----CEKVTRQLQFALEV 70
Query: 143 HCAKLQRLDLAS 154
+RL+++S
Sbjct: 71 DGVDYKRLEVSS 82
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 29.7 bits (67), Expect = 0.89
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKL 132
PV+E + R G FL+ I+LR C+ +T + I+ + N NL L ++L
Sbjct: 240 PVIEALLRHPGAFLKIIALRLCELLT---MYIVTAFALNYSTQNLGLPREL 287
>gnl|CDD|197281 cd09184, PLDc_FAM83D_N, N-terminal phospholipase D-like domain of
the protein, Family with sequence similarity 83D.
N-terminal phospholipase D (PLD)-like domain of the
protein Family with sequence similarity 83D (FAM83D),
also known as spindle protein CHICA. CHICA is a
cell-cycle-regulated spindle component, which localizes
to the mitotic spindle and is both upregulated and
phosphorylated during mitosis. CHICA is required to
localize the chromokinesin Kid to the mitotic spindle
and serves as a novel interaction partner of Kid, which
is required for the generation of polar ejection forces
and chromosome congression. Since the N-terminal
PLD-like domain of FAM83D shows only trace similarity
to the PLD catalytic domain and lacks the functionally
important histidine residue, FAM83D may share a similar
three-dimensional fold with PLD enzymes, but is
unlikely to carry PLD activity.
Length = 271
Score = 29.1 bits (65), Expect = 1.2
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSN-------WSRIDLFNFQTDVEGP 82
L +E L S +V ++ R A V K +I D S + F ++D+E P
Sbjct: 31 LKRERLPNFLSEDEVRAILRAAVVPKTISINGDDSELSQSASLDCSSVTYFPERSDIEPP 90
Query: 83 VLEN 86
VLE
Sbjct: 91 VLEL 94
>gnl|CDD|226987 COG4640, COG4640, Predicted membrane protein [Function unknown].
Length = 465
Score = 27.6 bits (61), Expect = 4.4
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 104 QSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALS 141
+ IL Y + D NL +L D A S+A S
Sbjct: 108 LKVDSEEAKILINYLKDHVDYKKNLFHELNDEADSVASS 146
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 27.3 bits (60), Expect = 5.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 109 NSLNILAQYCNNVEDINLNLCKKLTDATSLA-LSKHCAKLQRL 150
N N++ Y + +ED LN+ +L DA L+ + KH K +RL
Sbjct: 60 NHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRL 102
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 27.2 bits (60), Expect = 6.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 161 QSLKALADGCRNLTH 175
QS++ LADGCRN
Sbjct: 369 QSIRLLADGCRNFQQ 383
>gnl|CDD|221762 pfam12768, Rax2, Cortical protein marker for cell polarity.
Diploid yeast cells repeatedly polarize and bud from
their poles, due probably to the presence of highly
stable membrane markers, and Rax2 is one such marker. It
is inherited immutably at the cell cortex for multiple
generations, and has a half-life exceeding several
generations. The persistent inheritance of cortical
protein markers would provide a means of coupling a
cell's history with the future development of a precise
morphogenetic form. Both Rax1 and Rax2 localise to the
distal pole as well as to the division site and they
interact both with each other and with Bud8p and Bud9p
in the establishment and/or maintenance of the cortical
markers for bipolar budding. thus Rax2 is likely to
control cell polarity during vegetative growth, and in
fission yeast this is done by regulating the
localisation of for3p.
Length = 276
Score = 26.5 bits (59), Expect = 8.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 58 NILALDGSNWSRID--LFNFQTDVEG 81
+ DGS W+ +D +F T + G
Sbjct: 113 FLAGYDGSKWNSVDSDIFGDGTTIRG 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.412
Gapped
Lambda K H
0.267 0.0891 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,127,030
Number of extensions: 805432
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 29
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.1 bits)