RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9585
(189 letters)
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 123 bits (309), Expect = 2e-34
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 28 KKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLF--NFQTDVEGPVLE 85
LP ELLL IFS L + L + + V K W LA D S W +DL N DV G +L
Sbjct: 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS 69
Query: 86 N--ISRRCGGFLRQISLRGCQS-------------MTDNSLNILAQYCNNVEDINLNLCK 130
I+ RC L S + ++L+ + C+ +++++L +
Sbjct: 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129
Query: 131 KLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
L+D L+K+ L RL+L+ CS ++ +L+ L C L +N+SWC + TE
Sbjct: 130 -LSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185
Score = 82.6 bits (204), Expect = 2e-19
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLN-ILAQYCNNVEDINLNLC-KKLTDATSLALS 141
L+ + C L +++L C T+ + +A + +NL+ K L + L
Sbjct: 160 LQTLLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218
Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
+ C L LDL+ + + + L H+++S C +I
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPET 264
Score = 74.9 bits (184), Expect = 2e-16
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 84 LENISRRCGGFLRQISLRGC-QSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142
++ + Q++L G +++ + L+ L + C N+ ++L+ L +
Sbjct: 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF- 244
Query: 143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182
LQ L L+ C I ++L L + L + + +
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIV 283
Score = 62.2 bits (151), Expect = 5e-12
Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 46 SLCRCAQVSKA--WNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGC 103
+L C ++ +A ++++L ++ +++ L + RRC L + L
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDS 232
Query: 104 QSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSL 163
+ ++ Q N ++ ++L+ C + T L L L+ L + + D +L
Sbjct: 233 VMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTL 288
Query: 164 KALADGCRNL 173
+ L + +L
Sbjct: 289 QLLKEALPHL 298
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 109 bits (273), Expect = 3e-28
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 22/170 (12%)
Query: 26 INKKLPKELLLRIFSYLDVTS-LCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVL 84
I P+E+L +FS++ + + V K+W + W R +F +
Sbjct: 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSW----YEIERWCRRKVFIG--NCYAVSP 58
Query: 85 ENISRRCGGFLRQISLRGCQSMTDNSL-------------NILAQYCNNVEDINLNLCKK 131
+ RR +R + L+G D +L ++ +E+I L
Sbjct: 59 ATVIRRFPK-VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV- 116
Query: 132 LTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181
+TD ++K + L L+SC + L A+A CRNL +++
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166
Score = 78.8 bits (194), Expect = 1e-17
Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 46 SLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQS 105
L R + K +L + + +V V +S G L G
Sbjct: 217 KLNRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275
Query: 106 MTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKA 165
L + C+ + +NL+ + + L C KLQRL + +I D L+
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEV 332
Query: 166 LADGCRNLTHINISWCINITENG 188
LA C++L + +
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEP 355
Score = 73.4 bits (180), Expect = 9e-16
Identities = 38/203 (18%), Positives = 65/203 (32%), Gaps = 41/203 (20%)
Query: 15 LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVS-KAWNILALDGSNWSRIDLF 73
L R+ + D+ L EL+ + F V L C S +A N +DL
Sbjct: 112 LKRMVVTDDCL-------ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 74 NFQ-TDVEGPVLENISRRCGGFLRQISLRGCQSM-TDNSLNILAQYCNNVEDINLNLCKK 131
DV G L + L +++ S + ++L L C N++ + LN
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTS-LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223
Query: 132 LTDATSLALSKHCAKLQRLDLASCSF----------------------------ITDQSL 163
L +L + +L+ L + L
Sbjct: 224 LEKLATLL--QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281
Query: 164 KALADGCRNLTHINISWCINITE 186
A+ C LT +N+S+ +
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSY 304
Score = 69.9 bits (171), Expect = 2e-14
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQR 149
R + D + ++C ++ L+L LTD + + K++
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR--RLSLSGLLTDKVFEYIGTYAKKMEM 460
Query: 150 LDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186
L +A +D + + GC +L + I C +
Sbjct: 461 LSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496
Score = 66.1 bits (161), Expect = 3e-13
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
I C LR++SL G +TD + Y +E +++ +D +
Sbjct: 424 FGAIVEHCKD-LRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSG 479
Query: 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
C L++L++ C D++L A A + + +S C +++
Sbjct: 480 CDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSC-SVSFGA 522
Score = 61.5 bits (149), Expect = 1e-11
Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 22 DEAL--INKKLPKELLLRIFSYLDVTSLCRCAQVS-KAWNILALDGSNWSRIDLFNFQTD 78
+ AL I + P R+ + + + + R+ L TD
Sbjct: 386 NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTD 445
Query: 79 VEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSL 138
V E I + +S+ +D ++ + C+++ + + C D L
Sbjct: 446 K---VFEYIGTYAKK-MEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALL 499
Query: 139 ALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT--HINISWCINITENG 188
A + ++ L ++SCS ++ + K L L I+ +
Sbjct: 500 ANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 97.3 bits (242), Expect = 4e-24
Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 23/175 (13%)
Query: 30 LPKELLLRIFSYLDVTS-LCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENIS 88
+++ ++ +Y+ + V + W +D + + T + +S
Sbjct: 16 TVDDVIEQVMTYITDPKDRDSASLVCRRW--FKIDSETREHVTMALCYT----ATPDRLS 69
Query: 89 RRCGGFLRQISLRGCQSMTDNSLNI-------------LAQYCNNVEDINLNLCKKLTDA 135
RR LR + L+G +L ++ ++ ++ ++D
Sbjct: 70 RRFPN-LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDL 127
Query: 136 TSLALSK-HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENGK 189
L+K L+ L L CS T L ++ CR + + + ++GK
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182
Score = 70.4 bits (172), Expect = 1e-14
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLA 153
F R++ G M N + IL + + ++L T+ L + C L+ L+
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-HCTLIQKCPNLEVLETR 326
Query: 154 SCSFITDQSLKALADGCRNLTHINISWCINITENG 188
+ I D+ L+ LA C+ L + I +
Sbjct: 327 NV--IGDRGLEVLAQYCKQLKRLRIERGADEQGME 359
Score = 70.4 bits (172), Expect = 1e-14
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
+ ++ C R +TD L+ + QY NV + L +D + S+
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG 486
Query: 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181
C LQ+L++ C +++++ A +L ++ +
Sbjct: 487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523
Score = 67.3 bits (164), Expect = 1e-13
Identities = 18/198 (9%), Positives = 60/198 (30%), Gaps = 30/198 (15%)
Query: 15 LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVS-KAWNILALDGSNWSRIDL- 72
R+ + D L L L+ L +C+ + + + +
Sbjct: 119 FRRMIVSDLDL------DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172
Query: 73 FNFQTDVEGPVLENISRRCGGF-LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKK 131
+ ++ +G L +++ + + ++ L +A+ C ++ + + +
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232
Query: 132 LTDATSLALSKHCAKL---------------------QRLDLASCSFITDQSLKALADGC 170
L + + + ++L S++ + L
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292
Query: 171 RNLTHINISWCINITENG 188
+ +++ + + TE+
Sbjct: 293 AQIRKLDLLYALLETEDH 310
Score = 66.9 bits (163), Expect = 2e-13
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 4/121 (3%)
Query: 69 RIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNL 128
R + Q + L I + +R + L +D L ++ C N++ + +
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQYSPN-VRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRG 497
Query: 129 CKKLTDATSLALSKHCAKLQRLDLASCSF-ITDQSLKALADGCRNLTHINISWCINITEN 187
C ++ A L+ L + +T Q L +A N+ I + +
Sbjct: 498 CC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556
Query: 188 G 188
G
Sbjct: 557 G 557
Score = 66.5 bits (162), Expect = 2e-13
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 84 LENISRRCGGF--LRQISLRGCQSMTDNSLNI----LAQYCNNVEDINLNL-CKKLTDAT 136
LE+I R + L + +TD L+ L C + L LTD
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454
Query: 137 SLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
+ ++ ++ + L +D+ L + GC NL + + C +E
Sbjct: 455 LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC-CFSERA 504
Score = 63.8 bits (155), Expect = 2e-12
Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
+ + +R++ L T++ ++ + C N+E L + D L+++
Sbjct: 285 MPILFPFAAQ-IRKLDLLYALLETEDHCTLIQK-CPNLE--VLETRNVIGDRGLEVLAQY 340
Query: 144 CAKLQRLDLASC----------SFITDQSLKALADGCRNLTHINISWCINITENG 188
C +L+RL + ++ + L ALA GC+ L ++ + +IT
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNES 394
Score = 62.3 bits (151), Expect = 6e-12
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDI---NLNLCKKLTDATS--- 137
L +++ C L +++ +T+ SL + Y N+ D L+ +++TD
Sbjct: 370 LIALAQGCQE-LEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427
Query: 138 -LALSKHCAKLQRLDLAS-CSFITDQSLKALADGCRNLTHINISWCINITENG 188
+L C KL+R +TD L + N+ + + + ++ G
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEG 479
Score = 55.3 bits (133), Expect = 2e-09
Identities = 10/91 (10%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCK-KLTDATSLALSK 142
L SR C L+++ +RGC ++ ++ ++ + + + +T + +++
Sbjct: 480 LMEFSRGCPN-LQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537
Query: 143 HCAKLQRLDLASCSFITDQSLKALADGCRNL 173
++ + + Q + ++
Sbjct: 538 PYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568
Score = 49.9 bits (119), Expect = 1e-07
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 23/120 (19%)
Query: 84 LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNL--------------- 128
LE I+R C L + + + + A +LN
Sbjct: 212 LETIARNCRS-LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270
Query: 129 ------CKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182
+ L A++++LDL T+ + C NL + I
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ-KCPNLEVLETRNVI 329
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 85.5 bits (211), Expect = 2e-20
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQ------------ 76
+LP ++ L I S+L LC+ + WN D W L +
Sbjct: 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD 66
Query: 77 TDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKL 132
++ + ++ + C + + A + +E++N +L L
Sbjct: 67 LEILKKPISEVTDGAFFDYMAVYRMCCPYLIIQNEPRFAMFGPGLEELNTSLVLSL 122
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR,
leucine-rich repeat, SCF, ubiquitin, ubiquitin protein
ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB:
1ldk_E
Length = 53
Score = 67.6 bits (166), Expect = 5e-16
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID 71
LP ELLL IFS L + L + + V K W LA D S W +D
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 61.0 bits (148), Expect = 3e-12
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC---AKLQRLD 151
++ I M+ ++ VE I L C + D LS+ + ++
Sbjct: 63 IQAIDATDSCIMSIGFDHMEG--LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEME 120
Query: 152 LASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
+ SC +TD+ + AL RNL ++ +S + E
Sbjct: 121 IISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKE 156
Score = 58.3 bits (141), Expect = 4e-11
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 95 LRQISLRGCQSMTDNSLNILAQYCN---NVEDINLNLCKKLTDATSLALSKHCAKLQRLD 151
+ +I L C + D L L+Q N ++ ++ + C +TD +AL H L+ L
Sbjct: 87 VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLF 145
Query: 152 LASCSFITDQSLKALADGCRNLTHINIS 179
L+ + ++ A +L + +
Sbjct: 146 LSDLPGVKEKEKIVQA-FKTSLPSLELK 172
Score = 57.5 bits (139), Expect = 5e-11
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQR 149
RCG +R + Q N L ++ I+ + + +++
Sbjct: 33 RCGAMVRYHGQQRWQK-DYNHLPTGPLDKYKIQAIDATDSC-IMSI-GFDHMEGLQYVEK 89
Query: 150 LDLASCSFITDQSLKALADGC---RNLTHINISWCINITENG 188
+ L C +I D L+ L+ +++ + I C N+T+ G
Sbjct: 90 IRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 56.1 bits (136), Expect = 7e-10
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 28 KKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
LPKEL L + S+L+ L + AQ + W ILA D W
Sbjct: 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLW 59
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase,
FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Length = 297
Score = 54.2 bits (129), Expect = 3e-09
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 30 LPKELLLRIFSYLDVTSLCR-CAQVSKAWNILALDGSNWSRI 70
LP+ LLLR+ + L T L + C V W L W
Sbjct: 54 LPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 53.0 bits (128), Expect = 8e-09
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWN-ILALDGSNWSRI 70
LP E+ L+IF+YL + VS+ WN I+ S W ++
Sbjct: 18 LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 53.1 bits (128), Expect = 8e-09
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 30 LPKELL----LRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLE 85
LP L I SYLD SLC V K W + DG W ++ +TD +
Sbjct: 14 LPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTD---SLWR 70
Query: 86 NISRRCGGFLRQISLRGCQSMTDNSLNILAQY 117
++ R G + + A Y
Sbjct: 71 GLAERRGWGQYLFKNKPPDGNAPPNSFYRALY 102
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 41.1 bits (95), Expect = 9e-05
Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 95 LRQISLRGCQSMTDNSLNIL-AQYCNNVEDINLNLCKKLTDATSLALSKHC---AKLQRL 150
L+ + + + L + +E ++++ LTD + L H L+ +
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFI 312
Query: 151 DLASCSFITDQSLKALADGCRNLTHINISWC 181
++ +++D+ K L ++ S
Sbjct: 313 NMKYN-YLSDEMKKELQKSLPMKIDVSDSQE 342
Score = 38.8 bits (89), Expect = 5e-04
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDL 152
++ M N++ + + ++ S +L+ +D+
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286
Query: 153 ASCSFITDQSLKALADGCRNLTH---INISWCINITENG 188
S +TD+ + L D + H IN+ + +++
Sbjct: 287 -SAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEM 323
Score = 26.1 bits (56), Expect = 7.4
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 93 GFLRQISLRGCQ--SMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRL 150
F I + + L+ + + ++ + L S+ L+ L
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL----SIGKKPRP-NLKSL 198
Query: 151 DLASCSFITDQSLKALADG-CRNLTHINISWCIN 183
++ S D ++ + NL + + +
Sbjct: 199 EIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVE 231
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 38.5 bits (90), Expect = 7e-04
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD--ATSLA--LSKHCAKLQRL 150
L +++L CQ + L L + L L L L L ++ L
Sbjct: 103 LDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTL 160
Query: 151 DLASCSFITDQSLKALADG---CRNLTHINISWCINITENG 188
L++ +T + L +G ++TH+++ + + G
Sbjct: 161 RLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEG 199
Score = 33.9 bits (78), Expect = 0.021
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 139 ALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
L L ++LASC + L+ L + + ++
Sbjct: 95 VLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEA 142
Score = 33.2 bits (76), Expect = 0.042
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 95 LRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKKLTDATSLALS---KHCAKLQ 148
+ + L +T + +L +V ++L L D L+ +LQ
Sbjct: 157 ITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQ 214
Query: 149 RLDLASCSFITDQSLKALADGCRN---LTHINISWCINITENG 188
L++A D + ALA R L +++ + ++ G
Sbjct: 215 ELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN-ELSSEG 255
Score = 26.6 bits (59), Expect = 5.7
Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 95 LRQISLRGCQSMTDNSLNILAQY---CNNVEDINLNLCKKLTDATSLALSK-----HCAK 146
L+++++ D + LA+ ++E ++L + L+ L
Sbjct: 213 LQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGA 270
Query: 147 LQRLDLASCSFITDQSLKALADGCRNLTHIN 177
+ L + +++ L++ RNL +
Sbjct: 271 RVVVSLTEGTAVSEYWSVILSEVQRNLNSWD 301
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 36.2 bits (84), Expect = 0.004
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 95 LRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKKLTDATSLALS---KHCAKLQ 148
LR I + + + S+ A Q + + + + L +C +L+
Sbjct: 161 LRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219
Query: 149 RLDLASCSFITDQSLKALADG---CRNLTHINISWCINITENG 188
LDL + T ALA NL + ++ C ++ G
Sbjct: 220 VLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-LLSARG 260
Score = 31.6 bits (72), Expect = 0.12
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 95 LRQISLRGCQSMTDNSLNILAQY---CNNVEDINLNLCKKLTDATSLALSK-----HCAK 146
L+ + L+ T + LA N+ ++ LN C L+ + A+
Sbjct: 218 LKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIG 275
Query: 147 LQRLDLASCSFITDQSLKALADG----CRNLTHINISW 180
LQ L L I +++ L +L + ++
Sbjct: 276 LQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG 312
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 36.1 bits (84), Expect = 0.004
Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 95 LRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKKLTDAT----SLALSKHCAKL 147
L + ++ C T + + + ++ ++ + L DA L + + L
Sbjct: 315 LESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVL 372
Query: 148 QRLDLASCSFITDQSLKALADG---CRNLTHINISWCINITENG 188
+ L LA C ++D S +LA +L +++S + + G
Sbjct: 373 RVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAG 414
Score = 35.7 bits (83), Expect = 0.006
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 95 LRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDAT----SLALSKHCAKL 147
LR + + C +T L + ++++++L + L D L + +L
Sbjct: 258 LRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQL 315
Query: 148 QRLDLASCSFITDQSLKALADG---CRNLTHINISW 180
+ L + SCS T + R L + IS
Sbjct: 316 ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN 350
Score = 34.9 bits (81), Expect = 0.011
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 124 INLNL------CKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG---CRNLT 174
++L++ C++L+DA L + Q + L C +T+ K ++ L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALA 59
Query: 175 HINISWCINITENG 188
+N+ + + G
Sbjct: 60 ELNLRSN-ELGDVG 72
Score = 34.6 bits (80), Expect = 0.013
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 95 LRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKKLTDATSLALSKH----CAKL 147
+ + L C +T+ ++ + + ++NL + L D + + K+
Sbjct: 30 CQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKI 87
Query: 148 QRLDLASCSFITDQSLKALADG---CRNLTHINISWCINITENG 188
Q+L L +C +T L+ L +++S + + G
Sbjct: 88 QKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAG 129
Score = 34.2 bits (79), Expect = 0.017
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 95 LRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKKLTDATSLALS----KHCAKL 147
++++SL+ C +T +L+ + +++++L+ L DA L +L
Sbjct: 87 IQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRL 144
Query: 148 QRLDLASCSFITDQSLKALAD---GCRNLTHINISWC 181
++L L CS ++ S + LA + + +S
Sbjct: 145 EKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN 180
Score = 29.9 bits (68), Expect = 0.48
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 95 LRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDAT----SLALSKHCAKL 147
L ++ L C ++ S LA + +++ ++ + +A L +L
Sbjct: 144 LEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQL 201
Query: 148 QRLDLASCSFITDQSLKALADG---CRNLTHINISWC 181
+ L L SC +T + + L +L + +
Sbjct: 202 EALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN 237
Score = 28.0 bits (63), Expect = 1.9
Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 95 LRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKKLTDAT----SLALSKHCAKL 147
LR + L C ++D+S + LA +++ +++L+ L DA ++ + L
Sbjct: 372 LRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLL 429
Query: 148 QRLDLASCSFITDQSLKALADGCRNLTHINI 178
++L L +++ L ++ + +
Sbjct: 430 EQLVLYDIY-WSEEMEDRLQALEKDKPSLRV 459
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.016
Identities = 36/220 (16%), Positives = 64/220 (29%), Gaps = 92/220 (41%)
Query: 5 HFVHKK----RSNVLTRVF--LEDEALINKKLPKELLLRIFSY--------LDVTSLCRC 50
HF +K R N +F + D L +K+ KE+ SY L T
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF--- 1731
Query: 51 AQ-----VSKA-WNIL---------------------AL----------D--------GS 65
Q + KA + L AL G
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 66 ---------------------NWSRIDLFNFQTDVEGPVLENISRRCGGFLRQIS---LR 101
N R+ Q ++ V+E + +R G + +I +
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-VVERVGKRTGWLV-EIVNYNVE 1849
Query: 102 GCQ---SMTDNSLNILAQYCNNVEDINLNLCKKLTDATSL 138
Q + +L+ + N ++ +++ +L + SL
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDI-IELQKSLSL 1888
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 34.3 bits (79), Expect = 0.017
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 97 QISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDAT----SLALSKHCAKLQRLDL 152
+ + + ILA NV +NL+ L+ + L+ + LDL
Sbjct: 62 SLGFKNSDELVQ----ILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDL 116
Query: 153 ASCSFITDQSLKALADG----CRNLTHINISWCINITENG 188
+ +S ++T +N+ ++
Sbjct: 117 GWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKS 154
Score = 32.4 bits (74), Expect = 0.062
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 95 LRQISLRGCQSMTDNSLNILA---QYCN-NVEDINLNLCKKLTDAT----SLALSKHCAK 146
+ + L + S + ++ +NL L + L+ A
Sbjct: 111 ITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPAN 168
Query: 147 LQRLDLASCSFITDQSLKALADG----CRNLTHINISWCINITENG 188
+ L+L + + ++ LA ++T +++S +
Sbjct: 169 VNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKS 212
Score = 31.6 bits (72), Expect = 0.12
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 97 QISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD----ATSLALSKHCAKLQRLDL 152
++ + C + LA +V ++L+ L + S + L+L
Sbjct: 178 NLASKNCAELAK----FLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNL 232
Query: 153 ASCSFITDQSLKALADG---CRNLTHINISWC 181
+ SL+ L ++L + + +
Sbjct: 233 CLNC-LHGPSLENLKLLKDSLKHLQTVYLDYD 263
Score = 31.6 bits (72), Expect = 0.12
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDAT----SLALSKHCAKLQR 149
+ G + + + V ++L+L L + A + A +
Sbjct: 2 NYKLTLHPGSNPVEE-----FTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTS 55
Query: 150 LDLASCSFITDQSLKALADG----CRNLTHINISWCINITENG 188
L+L+ S + ++ L N+T +N+S ++
Sbjct: 56 LNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKS 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.20
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 66/196 (33%)
Query: 20 LEDEALINKKLPKELLLRIFS-YLDVT-----------SLCRCAQVSKAWN-----ILAL 62
L +L+ K+ PKE + I S YL++ S+ + K ++ L
Sbjct: 411 LHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 63 DG-------------SNWSRIDLF-----NFQTDVEGPVLENISRRCGGFLRQ-----IS 99
D + R+ LF +F FL Q +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-----------------RFLEQKIRHDST 512
Query: 100 LRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD--------ATSLALSKHCAKLQRLD 151
N+L L Y + D + + + +L SK+ L+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 152 LASCSFITDQSLKALA 167
+A I +++ K +
Sbjct: 573 MAEDEAIFEEAHKQVQ 588
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 27.6 bits (62), Expect = 2.2
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 110 SLNILAQYCNNVEDINLNLCKKLTDATSLALS------------KHCAKLQRLDLASCSF 157
+L L +V + LT T L +S K+ +DL+
Sbjct: 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 158 ITDQSLKALADGCRNLTHINIS 179
ITD + L L +NI
Sbjct: 149 ITD--IMPLK-TLPELKSLNIQ 167
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii}
SCOP: c.124.1.5
Length = 276
Score = 27.2 bits (61), Expect = 2.9
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 124 INL-NLCKKLTDATSLALSKHCA-KLQRLDLASCSFITDQSLKALADGCRNLTHIN 177
+L NL + + + K A + R + + + + DG +TH
Sbjct: 63 ASLYNLARFIPVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDDGDVIITHSF 118
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 26.7 bits (59), Expect = 3.6
Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 95 LRQISLRGCQSMTDNSLNILAQY-CNN--VEDINLNLCKKLTDATSLALS---KHCAKLQ 148
L+++++ + ++ + L + CN+ +E +L ++D+ + L + L+
Sbjct: 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLR 101
Query: 149 RLDLASCSFITDQSLKALADGCRNLTHINISWCINITEN 187
L++ S F+T + L L I N ++
Sbjct: 102 VLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQS 139
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 26.5 bits (58), Expect = 4.3
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 98 ISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKL 132
+S D+S+ +LA+ ++ ++L K
Sbjct: 99 VSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKAN 133
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 26.5 bits (59), Expect = 4.8
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 139 ALSKHCAKLQRLDLASCSFITDQSLKALADGCRN---LTHINISWCINITENG 188
+ + L+ ++L + I +LKA A+ + + +I +
Sbjct: 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPV 81
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 26.0 bits (57), Expect = 5.2
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 102 GCQSMTDNSLNILAQYCNNVEDINLNLCKK-LTDATSLALSK 142
D+S+ +LA+ ++ ++L K L A S L
Sbjct: 81 SVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGA 122
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, ATP synthesis, CF1, hydrogen ION transport,
hydrolase; NMR {Thermosynechococcus elongatus} PDB:
2rq7_A
Length = 138
Score = 25.8 bits (57), Expect = 5.9
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 92 GGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142
GGF + +N + IL + I+L K A AL++
Sbjct: 64 GGFA---------EVENNEVTILVNGAERGDTIDLEKAKAEFAAAQAALAQ 105
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit
delta, structural GEN PSI, protein structure initiative;
1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Length = 351
Score = 26.5 bits (59), Expect = 6.7
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 139 ALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHIN 177
+ KL D+ + + + L DG LT+ N
Sbjct: 117 LALREAEKLAEEDVERNRKMGEYGAELLEDGDVVLTYCN 155
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H*
3oeh_H* 3ofn_H* 3zry_H* 3oe7_H*
Length = 138
Score = 25.8 bits (57), Expect = 7.0
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 108 DNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142
D+ L + A +E + K L +S
Sbjct: 80 DSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSS 114
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner
membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces
cerevisiae}
Length = 160
Score = 25.9 bits (57), Expect = 7.4
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 108 DNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142
D+ L + A +E + K L +S
Sbjct: 102 DSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSS 136
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural
genomics, translation initiation factor, AIF-2B subunit,
PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Length = 347
Score = 26.1 bits (58), Expect = 7.5
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 139 ALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHIN 177
L K+ D+ I + + DG LTH N
Sbjct: 119 ILENEALKMAYEDIEVNKAIGKNGAQLIKDGSTILTHCN 157
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis,
F1-ATPase, single analysis, thermoalkaliphilic,
hydrolase; 3.06A {Bacillus SP}
Length = 135
Score = 25.4 bits (56), Expect = 8.8
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 92 GGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142
GGFL + + +NILA E+I++ KK L +
Sbjct: 65 GGFL---------EVRPDKVNILADTAELPEEIDVERAKKAKARHETILKR 106
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 26.1 bits (58), Expect = 9.1
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 118 CNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHIN 177
++ +++ K + + L + L+ LDL+ T +L +N
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 178 ISWC 181
+S+
Sbjct: 383 LSYN 386
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.412
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,771,641
Number of extensions: 150892
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 144
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.4 bits)