RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9585
(189 letters)
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 58.2 bits (140), Expect = 4e-12
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 28 KKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVL 84
+ + I SYLD SLC V K W + DG W ++ +TD L
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGL 72
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 55.8 bits (135), Expect = 4e-12
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
LP ELLL IFS L + L + + V K W LA D S W
Sbjct: 3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing
protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 52.4 bits (125), Expect = 5e-10
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTD 78
LPKEL L + S+L+ L + AQ + W ILA D W +
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDE 70
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 100
Score = 48.5 bits (115), Expect = 1e-08
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWN-ILALDGSNWSRIDLFNFQTDVEGPVLENIS 88
LP E+ L+IF+YL + VS+ WN I+ S W ++ + V +++
Sbjct: 9 LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENF--VSPKGFNSLN 66
Query: 89 RRCGGFLRQISLRGC 103
+ ++S +
Sbjct: 67 LKLSQKYPKLSQQDR 81
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 36.9 bits (83), Expect = 0.001
Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 120 NVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG---CRNLTHI 176
+++ +++ C++L+DA L + Q + L C +T+ K ++ L +
Sbjct: 3 DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAEL 60
Query: 177 NISWCINITENG 188
N+ + + G
Sbjct: 61 NLRSN-ELGDVG 71
Score = 28.0 bits (60), Expect = 0.76
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 142 KHCAKLQRLDLASCSFITDQSLKALADG---CRNLTHINISWCINITENG 188
+ + L+ L LA C ++D S +LA +L +++S + + G
Sbjct: 366 QPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAG 413
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 32.4 bits (72), Expect = 0.024
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
Query: 100 LRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFIT 159
L G + S + LQ L L+ C I
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214
Query: 160 DQSLKALADGCRNLTHINISWCIN 183
++L L + L + + +
Sbjct: 215 PETLLELGE-IPTLKTLQVFGIVP 237
Score = 32.4 bits (72), Expect = 0.025
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 103 CQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQS 162
+ ++ N ++ ++L+ C + T L L + L+ L + + D +
Sbjct: 185 SVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGT 240
Query: 163 LKALADGCRNL 173
L+ L + +L
Sbjct: 241 LQLLKEALPHL 251
Score = 32.0 bits (71), Expect = 0.033
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 129 CKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181
C + LA ++Q +DL++ I +L + C L ++++
Sbjct: 30 CPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL 81
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 29.4 bits (65), Expect = 0.19
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 109 NSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALAD 168
L D+ LN + + + +L L+L++ + ++
Sbjct: 30 KGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE-NIPELLSLNLSNNRLYRLDDMSSIVQ 88
Query: 169 GCRNLTHINISWCINIT 185
NL +N+S +
Sbjct: 89 KAPNLKILNLSGNELKS 105
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus
[TaxId: 5724]}
Length = 146
Score = 25.9 bits (56), Expect = 2.3
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 48 CRCAQVSKAWNILALDGSNW-SRIDLFNFQTDVEGP---------VLENISRRCGGFLRQ 97
S +I ++ SN +++ LFN V+ P + +IS+ FL +
Sbjct: 83 IAALDQSILSDINSMKPSNCRAKVVLFNPPNGVDDPYYSSDGFPTMFASISKEMKPFLTE 142
Query: 98 ISL 100
L
Sbjct: 143 HGL 145
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 25.5 bits (55), Expect = 5.0
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 170 CRNLTHINISWCINITENGK 189
+ LTHIN S+ ++I N +
Sbjct: 39 AKQLTHINFSF-LDINSNLE 57
>d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396
{Xanthomonas axonopodis pv. citri [TaxId: 92829]}
Length = 179
Score = 24.7 bits (54), Expect = 5.8
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 133 TDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITEN 187
AT KH + R + Q+ +AL L + + + I +
Sbjct: 106 GQATETWWKKHANAMGRYRNLRVIELDSQATEALG----ALIQRGMRFDVIIQDG 156
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 166
Score = 24.6 bits (52), Expect = 7.3
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 134 DATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCIN 183
+ T + + L+ ++L + I +LKA A+ + T++ +
Sbjct: 6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG 55
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 179
Score = 24.3 bits (53), Expect = 7.6
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITEN 187
+ + K ++ L + + + L+ LA I W + I+E
Sbjct: 108 SLRVWEGKVIPAIKNLKNVNIAAVPQDVLEVLA----KDMPRVIKWDVMISEG 156
>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces
cerevisiae virus L-A [TaxId: 11008]}
Length = 651
Score = 24.6 bits (53), Expect = 10.0
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 59 ILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGF--LRQISLRGCQSMTDNSLNILAQ 116
A +G W+ I F DV + I RR F L +++ + S I
Sbjct: 537 FYADNGDTWTHIPEFVTDGDVMEVFVTAIERRARHFVELPRLNSPAFFRSVEVSTTIYDT 596
Query: 117 Y 117
+
Sbjct: 597 H 597
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.412
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,472
Number of extensions: 29655
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 30
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.5 bits)