BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9586
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DZJ|A Chain A, 2dzjSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like
Domain In Human Synaptic Glycoprotein Sc2
Length = 88
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 6 TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59
T+ +IK K Q YP RQ++RL+ KGK LKD D ++ L + ++ +DL
Sbjct: 35 TIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 88
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 57 KDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYT 116
+DLG Q + F Y G L YL Y P + G+ AAS P VA L
Sbjct: 124 RDLGAQDAPAIAFGGSYGGMLSAYLRMKY-PHLVAGALAASAPVLAVAGLGDSNQFFRDV 182
Query: 117 KRVLETLTPSVFCQLGNLSIHLALRDLRPPGT-NVRRIPVATSNPFTSLFD 166
E +P C G ++DL G + R T P + D
Sbjct: 183 TADFEGQSPK--CTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKD 231
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 57 KDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYT 116
+DLG Q + F Y G L YL Y P + G+ AAS P VA L
Sbjct: 121 RDLGAQDAPAIAFGGSYGGXLSAYLRXKY-PHLVAGALAASAPVLAVAGLGDSNQFFRDV 179
Query: 117 KRVLETLTPSVFCQLGNLSIHLALRDLRPPGT-NVRRIPVATSNPFTSLFD 166
E +P C G ++DL G + R T P + D
Sbjct: 180 TADFEGQSPK--CTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKD 228
>pdb|1WX7|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
Domain In The Human Ubiquilin 3 (Ubqln3)
Length = 106
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNG 51
V+ + T++ +K+E+ + + + +PD+ + L GKILKD D + G+++G
Sbjct: 33 VTDTCTIQQLKEEISQ-RFKAHPDQ--LVLIFAGKILKDPDSLAQCGVRDG 80
>pdb|1YQB|A Chain A, Human Ubiquilin 3
Length = 100
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNG 51
V+ + T++ +K+E+ + + + +PD+ + L GKILKD D + G+++G
Sbjct: 38 VTDTCTIQQLKEEISQ-RFKAHPDQ--LVLIFAGKILKDPDSLAQCGVRDG 85
>pdb|3M62|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
Length = 106
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 24 DRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
+ ++L GK+L+DS + GLK+GD V
Sbjct: 38 EESQIKLIYSGKVLQDSKTVSECGLKDGDQV 68
>pdb|3QEC|A Chain A, Crystal Structure Of A Putative Carbohydrate Binding
Protein (Pa1324) From Pseudomonas Aeruginosa At 2.61 A
Resolution
Length = 150
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 116 TKRVLETLTP---SVFCQLGNLSIHLALRDLRPPGTNVRR---IPVATSNPFTSLFDYVS 169
TK LE T + + + GNL D++PP + RR + AT++ FD+
Sbjct: 45 TKVALEPATSYXKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQ-NGRFDFDH 103
Query: 170 CPNYTYEFGSWLSFS 184
PN TY S L++S
Sbjct: 104 IPNGTYYISSELTWS 118
>pdb|1XPN|A Chain A, Nmr Structure Of P. Aeruginosa Protein Pa1324: Northeast
Structural Genomics Consortium Target Pap1
Length = 170
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 116 TKRVLETLTP---SVFCQLGNLSIHLALRDLRPPGTNVRR---IPVATSNPFTSLFDYVS 169
TK LE T + + + GNL D++PP + RR + AT++ FD+
Sbjct: 65 TKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQ-NGRFDFDH 123
Query: 170 CPNYTYEFGSWLSFS 184
PN TY S L++S
Sbjct: 124 IPNGTYYISSELTWS 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,463,521
Number of Sequences: 62578
Number of extensions: 302931
Number of successful extensions: 647
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 11
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)