Query psy9586
Match_columns 233
No_of_seqs 216 out of 865
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:27:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02560 enoyl-CoA reductase 100.0 1.9E-74 4.2E-79 521.1 23.7 225 1-232 20-308 (308)
2 KOG1639|consensus 100.0 1E-71 2.2E-76 480.0 16.2 224 2-232 20-297 (297)
3 KOG1638|consensus 100.0 6.3E-43 1.4E-47 300.8 13.6 171 44-233 34-257 (257)
4 PLN02392 probable steroid redu 100.0 3.3E-40 7.2E-45 290.8 15.8 156 58-233 45-260 (260)
5 PLN03164 3-oxo-5-alpha-steroid 100.0 2.4E-37 5.1E-42 278.3 14.5 101 127-233 219-323 (323)
6 PF02544 Steroid_dh: 3-oxo-5-a 100.0 4.9E-37 1.1E-41 251.6 10.8 101 127-233 50-150 (150)
7 KOG1640|consensus 100.0 8.2E-31 1.8E-35 230.8 12.5 174 54-233 56-304 (304)
8 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 6.2E-15 1.3E-19 107.1 5.5 53 1-56 18-70 (73)
9 cd01801 Tsc13_N Ubiquitin-like 99.5 3.9E-14 8.5E-19 103.5 6.4 58 2-59 20-77 (77)
10 cd01793 Fubi Fubi ubiquitin-li 99.5 5.3E-14 1.1E-18 101.9 5.1 53 1-56 15-67 (74)
11 cd01794 DC_UbP_C dendritic cel 99.5 8.6E-14 1.9E-18 100.2 4.9 53 1-56 15-67 (70)
12 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 1.4E-13 3.1E-18 100.3 5.4 54 2-57 18-73 (75)
13 cd01807 GDX_N ubiquitin-like d 99.4 2.3E-13 5E-18 98.4 4.9 54 1-57 17-70 (74)
14 cd01804 midnolin_N Ubiquitin-l 99.4 2.8E-13 6.1E-18 99.3 5.3 52 1-56 18-69 (78)
15 cd01810 ISG15_repeat2 ISG15 ub 99.4 3.1E-13 6.7E-18 97.8 5.0 53 1-56 15-67 (74)
16 cd01808 hPLIC_N Ubiquitin-like 99.4 3.4E-13 7.4E-18 96.8 5.0 54 1-57 16-69 (71)
17 cd01798 parkin_N amino-termina 99.4 3.5E-13 7.6E-18 96.4 4.8 54 1-57 15-68 (70)
18 cd01792 ISG15_repeat1 ISG15 ub 99.4 3.8E-13 8.3E-18 98.9 4.9 55 1-56 19-73 (80)
19 cd01797 NIRF_N amino-terminal 99.4 5E-13 1.1E-17 98.2 5.2 53 1-56 19-71 (78)
20 cd01796 DDI1_N DNA damage indu 99.4 1E-12 2.2E-17 94.6 5.0 54 1-57 16-70 (71)
21 cd01802 AN1_N ubiquitin-like d 99.3 1.5E-12 3.3E-17 100.5 5.3 53 1-56 44-96 (103)
22 cd01805 RAD23_N Ubiquitin-like 99.3 2.1E-12 4.5E-17 93.6 5.3 54 1-57 17-72 (77)
23 PF00240 ubiquitin: Ubiquitin 99.3 1.9E-12 4.1E-17 91.7 4.6 54 1-57 12-65 (69)
24 cd01812 BAG1_N Ubiquitin-like 99.3 2.5E-12 5.4E-17 91.5 4.9 54 1-57 16-69 (71)
25 cd01790 Herp_N Homocysteine-re 99.3 2.8E-12 6E-17 94.6 5.1 55 1-57 20-77 (79)
26 cd01806 Nedd8 Nebb8-like ubiq 99.3 3.2E-12 7E-17 91.9 5.2 53 1-56 17-69 (76)
27 cd01803 Ubiquitin Ubiquitin. U 99.3 2.9E-12 6.3E-17 92.1 4.9 53 1-56 17-69 (76)
28 cd01800 SF3a120_C Ubiquitin-li 99.3 3.2E-12 6.9E-17 93.1 4.9 58 1-61 14-73 (76)
29 PTZ00044 ubiquitin; Provisiona 99.3 3.2E-12 7E-17 92.4 4.8 53 1-56 17-69 (76)
30 cd01809 Scythe_N Ubiquitin-lik 99.3 3.9E-12 8.5E-17 90.5 5.0 54 1-57 17-70 (72)
31 cd01813 UBP_N UBP ubiquitin pr 99.2 1.2E-11 2.6E-16 89.9 4.7 56 1-57 16-72 (74)
32 cd01799 Hoil1_N Ubiquitin-like 99.2 1.3E-11 2.8E-16 90.1 4.7 53 1-57 19-73 (75)
33 KOG0005|consensus 99.2 1.3E-11 2.7E-16 85.6 2.8 53 1-56 17-69 (70)
34 KOG0004|consensus 99.2 1.2E-11 2.6E-16 100.9 2.4 53 1-56 17-69 (156)
35 cd01769 UBL Ubiquitin-like dom 99.1 1.5E-10 3.3E-15 80.9 5.6 56 1-59 14-69 (69)
36 KOG0003|consensus 99.1 9.3E-12 2E-16 95.8 -1.1 60 1-63 17-78 (128)
37 smart00213 UBQ Ubiquitin homol 99.1 1.1E-10 2.3E-15 80.6 4.2 49 1-52 16-64 (64)
38 cd01814 NTGP5 Ubiquitin-like N 99.1 1.3E-10 2.7E-15 90.6 4.3 57 1-59 22-90 (113)
39 cd01795 USP48_C USP ubiquitin- 99.0 9.3E-10 2E-14 83.9 5.4 58 1-61 21-79 (107)
40 cd01763 Sumo Small ubiquitin-r 99.0 1.1E-09 2.4E-14 81.8 5.6 53 1-56 28-80 (87)
41 cd01789 Alp11_N Ubiquitin-like 99.0 1.4E-09 3.1E-14 80.8 5.9 60 1-61 19-83 (84)
42 KOG0010|consensus 98.9 1.5E-09 3.2E-14 102.7 5.1 53 1-56 31-83 (493)
43 TIGR00601 rad23 UV excision re 98.8 3.1E-09 6.7E-14 99.1 5.4 54 1-57 17-73 (378)
44 PF14560 Ubiquitin_2: Ubiquiti 98.8 2.8E-09 6.1E-14 79.4 4.2 60 2-62 21-86 (87)
45 PF06966 DUF1295: Protein of u 98.7 7.5E-08 1.6E-12 84.3 9.1 70 99-189 116-185 (235)
46 PF11976 Rad60-SLD: Ubiquitin- 98.4 3.5E-07 7.7E-12 65.2 3.9 54 1-57 17-71 (72)
47 COG3752 Steroid 5-alpha reduct 98.2 3.7E-06 8E-11 74.0 7.6 100 62-188 114-213 (272)
48 KOG0011|consensus 98.2 1.2E-06 2.7E-11 79.5 4.6 53 1-56 17-71 (340)
49 cd01788 ElonginB Ubiquitin-lik 98.2 1.4E-06 3E-11 68.1 4.1 46 2-50 19-64 (119)
50 KOG0001|consensus 98.2 4.1E-06 8.9E-11 57.8 5.6 53 2-57 17-69 (75)
51 KOG4248|consensus 98.1 3.7E-06 7.9E-11 85.6 4.8 60 1-64 19-78 (1143)
52 cd00196 UBQ Ubiquitin-like pro 98.0 1.5E-05 3.3E-10 51.9 5.4 54 2-58 15-68 (69)
53 PF04191 PEMT: Phospholipid me 97.9 0.00019 4.1E-09 54.5 9.8 94 127-221 11-106 (106)
54 PF11543 UN_NPL4: Nuclear pore 97.8 9.1E-06 2E-10 60.0 2.2 57 1-58 20-79 (80)
55 PF01222 ERG4_ERG24: Ergostero 97.8 0.00016 3.5E-09 68.8 9.7 107 127-233 312-432 (432)
56 PF13881 Rad60-SLD_2: Ubiquiti 97.6 0.00013 2.7E-09 57.2 5.3 49 2-52 21-75 (111)
57 KOG4495|consensus 97.5 9.2E-05 2E-09 56.3 2.8 49 2-51 19-67 (110)
58 COG2020 STE14 Putative protein 97.3 0.00042 9.1E-09 58.7 5.8 71 162-232 110-185 (187)
59 cd01811 OASL_repeat1 2'-5' oli 97.0 0.0021 4.5E-08 46.8 5.6 56 1-58 17-75 (80)
60 KOG1872|consensus 96.9 0.0014 3E-08 62.4 5.0 53 1-56 20-72 (473)
61 KOG3493|consensus 96.4 0.00071 1.5E-08 47.9 -0.1 52 2-56 19-70 (73)
62 KOG0006|consensus 96.4 0.0028 6.2E-08 57.8 3.1 58 1-61 20-77 (446)
63 PF08817 YukD: WXG100 protein 96.2 0.0035 7.5E-08 45.7 2.5 55 2-57 20-79 (79)
64 KOG1435|consensus 96.2 0.0087 1.9E-07 56.5 5.4 106 127-233 308-428 (428)
65 KOG4650|consensus 96.1 0.014 3.1E-07 51.7 6.0 29 160-188 216-244 (311)
66 PF10302 DUF2407: DUF2407 ubiq 96.0 0.011 2.3E-07 45.3 4.3 40 3-44 22-62 (97)
67 KOG3206|consensus 95.2 0.042 9.1E-07 47.5 5.4 62 2-64 20-86 (234)
68 PF04140 ICMT: Isoprenylcystei 94.5 0.23 5E-06 37.5 7.5 50 162-211 38-89 (94)
69 KOG0013|consensus 94.5 0.054 1.2E-06 46.9 4.4 49 2-53 164-212 (231)
70 PF15044 CLU_N: Mitochondrial 93.6 0.17 3.6E-06 36.9 4.9 54 1-57 1-56 (76)
71 KOG1769|consensus 93.4 0.22 4.8E-06 38.2 5.5 51 3-56 39-89 (99)
72 PF10209 DUF2340: Uncharacteri 91.1 0.49 1.1E-05 37.7 5.0 55 4-58 26-107 (122)
73 cd01774 Faf1_like2_UBX Faf1 ik 90.2 1 2.3E-05 33.4 5.9 56 2-59 22-85 (85)
74 smart00166 UBX Domain present 90.0 1.3 2.7E-05 32.0 6.1 55 2-57 22-79 (80)
75 PF11470 TUG-UBL1: GLUT4 regul 90.0 0.94 2E-05 32.1 5.2 53 1-56 13-65 (65)
76 KOG2628|consensus 88.5 1.6 3.5E-05 37.4 6.5 95 128-232 101-200 (201)
77 PF00789 UBX: UBX domain; Int 88.3 1.2 2.6E-05 32.0 5.0 55 2-57 24-81 (82)
78 cd01767 UBX UBX (ubiquitin reg 86.2 3.1 6.6E-05 29.7 6.0 53 2-57 20-75 (77)
79 PF13019 Telomere_Sde2: Telome 84.8 3.1 6.7E-05 34.7 6.1 63 1-64 21-91 (162)
80 TIGR01682 moaD molybdopterin c 84.6 2 4.4E-05 30.9 4.5 47 5-56 27-73 (80)
81 PF10407 Cytokin_check_N: Cdc1 84.0 1.5 3.2E-05 31.9 3.4 52 2-54 10-65 (73)
82 cd01770 p47_UBX p47-like ubiqu 83.2 3.9 8.5E-05 29.8 5.5 52 2-53 22-74 (79)
83 COG1755 Uncharacterized protei 82.9 4.1 8.9E-05 34.2 6.1 58 158-215 107-166 (172)
84 PLN02799 Molybdopterin synthas 81.2 1.4 3E-05 31.8 2.5 50 2-56 26-75 (82)
85 cd00754 MoaD Ubiquitin domain 81.2 3.8 8.3E-05 28.9 4.8 48 2-56 23-73 (80)
86 cd01772 SAKS1_UBX SAKS1-like U 81.2 5.9 0.00013 28.7 5.8 54 2-57 22-78 (79)
87 PF02597 ThiS: ThiS family; I 79.0 1 2.3E-05 31.6 1.2 51 2-56 19-70 (77)
88 TIGR01687 moaD_arch MoaD famil 77.0 5.6 0.00012 28.9 4.7 48 4-56 24-81 (88)
89 TIGR02958 sec_mycoba_snm4 secr 76.2 6.4 0.00014 37.9 6.0 56 2-58 19-79 (452)
90 cd01773 Faf1_like1_UBX Faf1 ik 75.9 11 0.00023 28.0 5.8 55 3-59 24-81 (82)
91 KOG4583|consensus 75.6 1.1 2.4E-05 41.6 0.5 40 5-46 32-72 (391)
92 PF14732 UAE_UbL: Ubiquitin/SU 74.8 4.2 9E-05 30.2 3.5 64 3-66 7-76 (87)
93 PF08825 E2_bind: E2 binding d 74.7 2.7 5.9E-05 31.2 2.4 60 1-62 3-74 (84)
94 cd06539 CIDE_N_A CIDE_N domain 74.5 13 0.00028 27.4 5.8 53 5-60 21-73 (78)
95 PF10790 DUF2604: Protein of U 74.5 2.1 4.6E-05 30.5 1.7 36 20-56 33-68 (76)
96 PF14836 Ubiquitin_3: Ubiquiti 74.1 9.1 0.0002 28.8 5.1 53 2-56 21-77 (88)
97 PF12754 Blt1: Cell-cycle cont 72.8 1.1 2.5E-05 40.9 0.0 43 4-49 103-160 (309)
98 cd06406 PB1_P67 A PB1 domain i 67.8 11 0.00025 27.8 4.3 30 1-31 17-46 (80)
99 COG5227 SMT3 Ubiquitin-like pr 67.5 7.8 0.00017 29.5 3.4 50 3-55 43-92 (103)
100 PF02017 CIDE-N: CIDE-N domain 67.5 20 0.00043 26.4 5.5 53 5-60 21-73 (78)
101 PF08337 Plexin_cytopl: Plexin 67.5 5.3 0.00011 39.4 3.3 54 4-57 211-287 (539)
102 smart00266 CAD Domains present 66.5 25 0.00055 25.6 5.9 50 5-57 19-68 (74)
103 COG5417 Uncharacterized small 65.4 12 0.00026 27.5 3.9 29 28-56 52-80 (81)
104 cd01615 CIDE_N CIDE_N domain, 64.1 31 0.00067 25.4 6.0 51 5-58 21-71 (78)
105 cd01771 Faf1_UBX Faf1 UBX doma 63.3 29 0.00063 25.2 5.8 54 2-57 22-78 (80)
106 cd00565 ThiS ThiaminS ubiquiti 61.4 24 0.00051 24.2 4.9 47 2-56 12-58 (65)
107 PF09379 FERM_N: FERM N-termin 59.2 34 0.00073 24.0 5.5 55 1-56 13-74 (80)
108 cd06537 CIDE_N_B CIDE_N domain 58.7 42 0.0009 24.9 5.9 53 5-61 21-73 (81)
109 KOG2982|consensus 57.5 10 0.00023 35.3 3.1 54 3-57 356-415 (418)
110 smart00295 B41 Band 4.1 homolo 56.3 33 0.00071 28.1 5.8 54 1-56 20-80 (207)
111 PRK06437 hypothetical protein; 55.5 36 0.00077 23.8 5.0 44 2-57 18-61 (67)
112 PF08783 DWNN: DWNN domain; I 54.5 14 0.00029 26.9 2.7 18 3-21 19-36 (74)
113 PF11620 GABP-alpha: GA-bindin 52.9 11 0.00024 28.3 2.0 48 4-54 12-59 (88)
114 cd06538 CIDE_N_FSP27 CIDE_N do 52.8 57 0.0012 24.0 5.8 52 5-60 21-72 (79)
115 TIGR01683 thiS thiamine biosyn 52.5 40 0.00086 23.0 4.8 47 2-56 11-57 (64)
116 KOG4147|consensus 51.4 21 0.00046 28.0 3.5 21 36-56 89-110 (127)
117 cd01776 Rin1_RA Ubiquitin doma 50.1 29 0.00063 25.9 3.9 41 1-41 20-62 (87)
118 PRK11130 moaD molybdopterin sy 48.8 58 0.0013 23.3 5.4 48 4-56 25-74 (81)
119 cd06536 CIDE_N_ICAD CIDE_N dom 45.0 88 0.0019 23.1 5.8 53 5-60 21-75 (80)
120 KOG4572|consensus 44.7 31 0.00066 36.0 4.3 54 3-58 14-69 (1424)
121 PF02991 Atg8: Autophagy prote 44.0 33 0.00071 26.4 3.6 42 1-44 39-80 (104)
122 cd06407 PB1_NLP A PB1 domain i 42.8 73 0.0016 23.3 5.1 53 1-54 16-76 (82)
123 cd06411 PB1_p51 The PB1 domain 41.6 57 0.0012 24.0 4.3 30 1-31 13-42 (78)
124 PF14453 ThiS-like: ThiS-like 41.3 74 0.0016 21.9 4.6 41 2-56 13-53 (57)
125 cd01764 Urm1 Urm1-like ubuitin 41.2 45 0.00098 25.0 3.9 51 3-57 27-88 (94)
126 PF14533 USP7_C2: Ubiquitin-sp 40.0 52 0.0011 28.3 4.6 53 1-56 40-98 (213)
127 PTZ00380 microtubule-associate 39.0 55 0.0012 26.0 4.2 41 1-44 47-87 (121)
128 KOG2013|consensus 37.8 43 0.00094 33.0 4.0 60 4-66 453-518 (603)
129 PRK05863 sulfur carrier protei 37.5 1.1E+02 0.0024 20.9 5.2 46 2-56 13-58 (65)
130 PRK06488 sulfur carrier protei 37.2 84 0.0018 21.4 4.5 45 4-56 14-58 (65)
131 PRK08364 sulfur carrier protei 36.6 1.2E+02 0.0026 21.1 5.3 43 2-56 21-63 (70)
132 smart00666 PB1 PB1 domain. Pho 36.2 75 0.0016 22.3 4.3 33 1-34 17-50 (81)
133 KOG3146|consensus 35.1 3.1E+02 0.0068 24.1 10.2 73 108-187 43-118 (228)
134 PF15207 TMEM240: TMEM240 fami 35.1 2E+02 0.0043 23.7 6.8 77 135-218 34-128 (180)
135 cd01611 GABARAP Ubiquitin doma 34.2 71 0.0015 24.9 4.1 53 1-56 47-103 (112)
136 PRK05659 sulfur carrier protei 33.1 1.2E+02 0.0026 20.5 4.8 47 2-56 13-59 (66)
137 PRK07440 hypothetical protein; 32.6 1.1E+02 0.0024 21.5 4.6 47 2-56 17-63 (70)
138 PF09469 Cobl: Cordon-bleu ubi 32.5 77 0.0017 23.4 3.7 43 14-60 3-46 (79)
139 PF11241 DUF3043: Protein of u 32.2 1.6E+02 0.0034 24.8 6.1 57 164-220 67-136 (170)
140 KOG4142|consensus 29.7 1E+02 0.0023 26.0 4.5 39 162-200 140-178 (208)
141 COG5100 NPL4 Nuclear pore prot 29.6 1.1E+02 0.0024 29.5 5.2 56 2-57 17-77 (571)
142 cd01445 TST_Repeats Thiosulfat 29.5 44 0.00095 26.5 2.3 35 41-75 85-122 (138)
143 PF12436 USP7_ICP0_bdg: ICP0-b 29.1 34 0.00073 30.1 1.7 57 1-58 91-151 (249)
144 PRK07696 sulfur carrier protei 28.9 1.5E+02 0.0032 20.6 4.6 44 5-56 17-60 (67)
145 PHA01627 DNA binding protein 28.8 48 0.001 25.8 2.3 28 20-47 60-101 (107)
146 PF11525 CopK: Copper resistan 27.8 23 0.0005 25.5 0.3 15 44-58 8-23 (73)
147 cd01760 RBD Ubiquitin-like dom 27.5 1.1E+02 0.0024 21.9 3.9 38 1-39 16-55 (72)
148 PRK08053 sulfur carrier protei 27.5 2E+02 0.0044 19.6 5.1 47 2-56 13-59 (66)
149 KOG0400|consensus 26.1 35 0.00075 27.7 1.1 27 4-30 27-54 (151)
150 PLN02797 phosphatidyl-N-dimeth 26.1 1.4E+02 0.003 24.9 4.6 58 127-188 74-133 (164)
151 PF13756 Stimulus_sens_1: Stim 25.7 1E+02 0.0023 23.7 3.7 36 21-61 14-50 (112)
152 cd01775 CYR1_RA Ubiquitin doma 24.8 2.4E+02 0.0051 21.6 5.4 35 2-37 20-57 (97)
153 PF09269 DUF1967: Domain of un 24.5 39 0.00084 23.9 1.0 19 40-58 46-64 (69)
154 KOG0012|consensus 24.5 76 0.0016 29.9 3.1 51 3-56 21-73 (380)
155 TIGR01439 lp_hng_hel_AbrB loop 24.4 1E+02 0.0022 18.7 2.9 31 31-61 4-35 (43)
156 COG5264 VTC1 Vacuolar transpor 24.4 1.8E+02 0.0039 23.3 4.8 36 177-213 35-84 (126)
157 PF02037 SAP: SAP domain; Int 24.4 76 0.0017 19.2 2.2 18 4-23 3-20 (35)
158 TIGR03595 Obg_CgtA_exten Obg f 24.0 55 0.0012 23.2 1.7 19 40-58 46-64 (69)
159 cd05992 PB1 The PB1 domain is 23.5 1.5E+02 0.0033 20.5 4.0 28 3-31 19-46 (81)
160 PRK06083 sulfur carrier protei 23.3 2.3E+02 0.0049 20.8 5.0 48 2-57 31-78 (84)
161 cd06409 PB1_MUG70 The MUG70 pr 23.0 1.4E+02 0.0031 22.2 3.9 32 2-34 18-53 (86)
162 PF14990 DUF4516: Domain of un 22.0 1.9E+02 0.0041 19.2 3.8 30 195-224 13-44 (47)
163 PF00564 PB1: PB1 domain; Int 21.9 1.4E+02 0.003 20.9 3.5 32 2-34 19-51 (84)
164 PF13789 DUF4181: Domain of un 21.6 2.4E+02 0.0053 21.5 5.1 23 165-187 24-46 (110)
165 PF12949 HeH: HeH/LEM domain; 21.6 76 0.0016 19.7 1.8 15 3-17 2-16 (35)
166 PF15584 Imm44: Immunity prote 21.3 59 0.0013 24.7 1.5 24 153-176 19-51 (94)
167 KOG4580|consensus 20.9 2.4E+02 0.0053 22.1 4.8 37 177-214 20-70 (112)
168 PF03658 Ub-RnfH: RnfH family 20.2 1.1E+02 0.0024 22.7 2.7 38 2-42 21-61 (84)
No 1
>PLN02560 enoyl-CoA reductase
Probab=100.00 E-value=1.9e-74 Score=521.12 Aligned_cols=225 Identities=42% Similarity=0.766 Sum_probs=202.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-----CCCcccCCchhhhhcCCCCCceEEEecCCCccchhhhhhHHhhh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-----IKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAG 75 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-----~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~qi~w~~vf~~Ey~g 75 (233)
+++++||+|||++|+++...++++||||+++ ++|+.|+|+++|+|+|+++|+||++|||||||||||||++||+|
T Consensus 20 v~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kDLGpQi~wrtVF~~EY~G 99 (308)
T PLN02560 20 VPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKDLGPQVSYRTLFFFEYLG 99 (308)
T ss_pred cCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEeCCCcCchhhhHHHHhhh
Confidence 4789999999999999933358999999985 24568999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccccccCC-C-CCCCchhHHHHHHHHHHHHHHHHHHHhhh---------ch-------------------
Q psy9586 76 PLFVYLIFYYRPWIFYGS-E-AASKPYSYVAHLAALCYIVHYTKRVLETL---------TP------------------- 125 (233)
Q Consensus 76 pl~~~~~~~~~~~~i~~~-~-~~~~~~~~~~~l~~~~~~~Hy~kR~~et~---------~p------------------- 125 (233)
||+++++||++++ +|+. . ....+.+..|+++++||++||+||++||+ +|
T Consensus 100 Pl~i~~l~y~~~~-~y~~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~Et~fvhrfS~~tmpl~n~~~n~~~Yw~~~~~~~ 178 (308)
T PLN02560 100 PLLIYPLFYFFPQ-VYKYFGYPARRVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLFNVFRNCAYYWTFGAYIA 178 (308)
T ss_pred HHHHHHHHHHhhh-hhcccccCcCCCCchHHHHHHHHHHHHHHHHhhheeeeEeecCCCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888 9862 1 11245678899999999999999999998 11
Q ss_pred ----------------------hhhHhhhhHHHHHHHHhcCCC-CCcccccccCCCCCCCCccceecccchhhHHHHHHH
Q psy9586 126 ----------------------SVFCQLGNLSIHLALRDLRPP-GTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLS 182 (233)
Q Consensus 126 ----------------------~~~~~~~n~~~h~~L~~LR~~-~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~ 182 (233)
.++||.+|++||.+|++||++ |+++|+||+ ||||++|||||||+||++|+|
T Consensus 179 y~~~~~~~~~~~~~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~------g~lF~~VscPnY~~Ei~~W~g 252 (308)
T PLN02560 179 YFVNHPLYTPVSETQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPR------GFLFNYVTCANYTTEIYQWLG 252 (308)
T ss_pred hhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCC------CCCcCeecCCcHHHHHHHHHH
Confidence 178899999999999999998 998888887 899999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhCCC------CCCCceeeeccc
Q psy9586 183 FSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPD------YPKQRKAIVPFV 232 (233)
Q Consensus 183 f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~~------yp~~RkaiIPfi 232 (233)
|+++++++++++|++++++||.+||.+|||||+++|+| ||++|++++||+
T Consensus 253 f~~~t~~~~~~~F~~~~~~~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~~ 308 (308)
T PLN02560 253 FNIATQTVAGYLFLAVAAAIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 308 (308)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCCceEeCCCcC
Confidence 99999999999999999999999999999999999987 999777777764
No 2
>KOG1639|consensus
Probab=100.00 E-value=1e-71 Score=480.04 Aligned_cols=224 Identities=51% Similarity=0.978 Sum_probs=208.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCcee--EEEcCCCcccCCchhhhhcCCCCCceEEEecCCCccchhhhhhHHhhhhHHH
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQA--VRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFV 79 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQr--L~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~qi~w~~vf~~Ey~gpl~~ 79 (233)
+.+.|++|++++|+++..++.+.||| |..+++||.|.|+.+|+|||..+|.|+++|||||||||||||+.||+||+++
T Consensus 20 s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLGpQI~wrtvF~~EYlGPLlv 99 (297)
T KOG1639|consen 20 SGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLGPQISWRTVFFAEYLGPLLV 99 (297)
T ss_pred CCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccCCccchhhhhHHHhhchHHh
Confidence 45679999999888875788885555 5556889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhh---------ch-------------------------
Q psy9586 80 YLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL---------TP------------------------- 125 (233)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et~---------~p------------------------- 125 (233)
|++||+++..+||... ..++.|++|+.+|++||.||++||+ +|
T Consensus 100 y~~Fy~~p~~vyg~~~---~i~~~~~iA~~~~~~Hy~KRl~ET~FvhrFs~atmp~~nlfKnC~~yw~~~~~vaYfvnhp 176 (297)
T KOG1639|consen 100 YPLFYYRPTLVYGKDA---VIHPLQRIAFFLWLFHYGKRLLETIFVHRFSLATMPIFNLFKNCFYYWGFSALVAYFVNHP 176 (297)
T ss_pred HhHHHhchheeechhh---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999754 4788999999999999999999998 11
Q ss_pred ------------------hhhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhh
Q psy9586 126 ------------------SVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLT 187 (233)
Q Consensus 126 ------------------~~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~ 187 (233)
.++||++||+||..||+||+.|++.++||. |.|.+|++||||||++|+..|++|++|+
T Consensus 177 ~~t~~~~~~~~~~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~----~~g~lFnlvscpNYt~Ev~sWi~F~i~t 252 (297)
T KOG1639|consen 177 LFTPPKLGKLQVKLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPL----PDGFLFNLVSCPNYTYEVGSWIGFAIMT 252 (297)
T ss_pred CCCCcchhhhhhhhhhHHHhhhhhcceeeEeehhhccCCcCccceeec----CCccEEEEEecCCcceehHHHHHHHHHH
Confidence 189999999999999999999999999998 6789999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHHhhCCCCCCCceeeeccc
Q psy9586 188 SCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFV 232 (233)
Q Consensus 188 ~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~~yp~~RkaiIPfi 232 (233)
+|+++++|+.++++||.+||++||+.|+|+|+|||++|++||||+
T Consensus 253 q~l~a~lFl~vg~aqMtiWA~~Kh~~ylKeFp~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 253 QCLAAYLFLTVGAAQMTIWAKGKHRRYLKEFPDYPRRRKIIIPFV 297 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhcccCCccccccCCCC
Confidence 999999999999999999999999999999999999999999996
No 3
>KOG1638|consensus
Probab=100.00 E-value=6.3e-43 Score=300.78 Aligned_cols=171 Identities=35% Similarity=0.583 Sum_probs=137.1
Q ss_pred hhcCCCCCceEEE-ecCCCccchhhhhhHHhhhhHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q psy9586 44 KSLGLKNGDMVFI-KDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLET 122 (233)
Q Consensus 44 ~~ygv~~~~tl~v-kdlg~qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et 122 (233)
..||.-+++.=-. ..+.|+++| |++|... +..++..+.+ +... +. ..-.+...++++||.+|.++.
T Consensus 34 s~yGr~s~s~~~~~~~ip~~~aw---~iqe~Pa--f~~pl~~~~~----~~~~-~~---~~~~~L~~~flvHYf~R~liy 100 (257)
T KOG1638|consen 34 SGYGRHSSSLNPTKTRIPPRIAW---FIQELPA--FAIPLYSLFR----GPSS-DL---PPGLLLLSAFLVHYFHRALIY 100 (257)
T ss_pred cCCceecCCCcchhcCCCchhHH---HHhcCcH--HHhhHHHhcC----CCcc-cc---cccHHHHHHHHHHHHHHHHhh
Confidence 4455544433221 239999999 4888544 3333332211 1111 01 224677788999999999997
Q ss_pred h--------ch--------------------------------------------hhhHhhhhHHHHHHHHhcCCCCCcc
Q psy9586 123 L--------TP--------------------------------------------SVFCQLGNLSIHLALRDLRPPGTNV 150 (233)
Q Consensus 123 ~--------~p--------------------------------------------~~~~~~~n~~~h~~L~~LR~~~~~~ 150 (233)
+ .| .++|+.+|+++|.+|++|||+|.++
T Consensus 101 pf~~~~~~~~p~~i~a~a~~F~~~NG~lqg~y~~~~~~~~d~~~~~~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~ 180 (257)
T KOG1638|consen 101 PFLIRSSNPSPAIIVALAIAFCTLNGTLQGLYLSHYQLYEDPWVTDIRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKG 180 (257)
T ss_pred eeeecCCCCccHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCc
Confidence 7 01 1888999999999999999999999
Q ss_pred cccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhCCCCCCCceeeec
Q psy9586 151 RRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVP 230 (233)
Q Consensus 151 ~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~~yp~~RkaiIP 230 (233)
|+||+ ||||+||||||||+||++|+|+++++++++++.|+++++++|.+||..+|+||+|+|+||||+|||+||
T Consensus 181 YkIP~------GglFeyVsCPNYfgEiieW~Gyal~~ws~p~~aFa~ft~~~l~pRA~ahH~WY~~kFe~YPk~RkAlIP 254 (257)
T KOG1638|consen 181 YKIPR------GGLFEYVSCPNYFGEIIEWIGYALASWSLPALAFAFFTICNLGPRAYAHHKWYLKKFEDYPKNRKALIP 254 (257)
T ss_pred eecCC------CceEEEeecchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCccceeecc
Confidence 88887 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy9586 231 FVI 233 (233)
Q Consensus 231 fi~ 233 (233)
||+
T Consensus 255 fvf 257 (257)
T KOG1638|consen 255 FVF 257 (257)
T ss_pred ccC
Confidence 986
No 4
>PLN02392 probable steroid reductase DET2
Probab=100.00 E-value=3.3e-40 Score=290.78 Aligned_cols=156 Identities=27% Similarity=0.433 Sum_probs=130.8
Q ss_pred cCCCccchhhhhhHHhhhhHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhh--c----------h
Q psy9586 58 DLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL--T----------P 125 (233)
Q Consensus 58 dlg~qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et~--~----------p 125 (233)
.++++++|. +||..++++...+ +. .++. .....+.+.++++++||++|.+..+ + |
T Consensus 45 ~vp~rlaW~---lmE~P~~~~~~~~-~~-----~~~~----~~~~~~~vl~~lf~~HY~~Ra~i~Pl~~~~~~~~~~~~p 111 (260)
T PLN02392 45 TVSPPLAWF---LMESPTLWLTLLL-FP-----LGQH----FTNPKALLLMSPYLLHYFHRTCIYPLRLYRSTSQQNTKG 111 (260)
T ss_pred CCCchHHHH---HhhccHHHHHHHH-Hh-----cCcc----ccccHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCC
Confidence 588999995 9998886654322 21 1221 1223357888899999999988765 0 1
Q ss_pred -----------------------------------------------hhhHhhhhHHHHHHHHhcCCCCCcccccccCCC
Q psy9586 126 -----------------------------------------------SVFCQLGNLSIHLALRDLRPPGTNVRRIPVATS 158 (233)
Q Consensus 126 -----------------------------------------------~~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~ 158 (233)
.++|+.+|+++|.+|++|||+| ++|+||+
T Consensus 112 ~p~~i~~~a~~F~~~Ng~lq~~wl~~~~~~y~~~~~~~~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~--- 187 (260)
T PLN02392 112 FPVSMALLAFGFNLLNAYLQARWVSHYKDDYEDGGWFWWRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPR--- 187 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCC---
Confidence 1788999999999999999987 5666665
Q ss_pred CCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhCC-CCCCCceeeecccC
Q psy9586 159 NPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFP-DYPKQRKAIVPFVI 233 (233)
Q Consensus 159 ~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~-~yp~~RkaiIPfi~ 233 (233)
||+|++|||||||+||++|+||+++++++++++|++++++||.+||.++||||+|||+ |||++|||+||||+
T Consensus 188 ---GGlF~~VscPnYf~EileW~gfal~t~s~~~~~F~~~~~~nl~~rA~~~hkwY~~kFg~~ypk~RkaiIPfi~ 260 (260)
T PLN02392 188 ---GGWFELVSCPNYFGEIVEWLGWAVMTWSWAGFGFFLYTCSNLVPRACANHKWYLEKFGEDYPKGRKAVIPFLY 260 (260)
T ss_pred ---CCCcCeEcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCeEecCccC
Confidence 8999999999999999999999999999999999999999999999999999999996 79999999999986
No 5
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=278.29 Aligned_cols=101 Identities=27% Similarity=0.451 Sum_probs=91.1
Q ss_pred hhHhhhhHHHHHHHHhcCC--CCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc--chhHHHHHHHHHHH
Q psy9586 127 VFCQLGNLSIHLALRDLRP--PGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS--CFPALLFASAGMYQ 202 (233)
Q Consensus 127 ~~~~~~n~~~h~~L~~LR~--~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~--~~~~~~f~~~~~~~ 202 (233)
++|+..|++||.+|++||+ +|+++|+||+ ||||++|||||||+||++|+||+++++ +...++|++++++|
T Consensus 219 lig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~------GglF~~VSCPHYf~EIliw~gfal~t~~~~~~~~l~~~~v~~n 292 (323)
T PLN03164 219 LWGWIHQYRCHAILGSLREHKKQADEYVIPY------GDWFEMVSCPHYLAEIVIYAGLLIASGGTDLTIWLLFGFVVAN 292 (323)
T ss_pred HHHHHHHHHHHHHHHHcCcCCCCCceEECCC------CCCcCeEcCCcHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 4567899999999999994 4556666665 899999999999999999999999997 46668888999999
Q ss_pred HHHHHHHHhHHHHhhCCCCCCCceeeecccC
Q psy9586 203 MTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233 (233)
Q Consensus 203 m~~~A~~~h~wY~~~F~~yp~~RkaiIPfi~ 233 (233)
|.+||.++|+||++||+|||++||||||||+
T Consensus 293 L~~~A~~tHkWY~kkF~dYPk~RkAIIPfI~ 323 (323)
T PLN03164 293 LTFAAAETHRWYLQKFENYPRNRYAIIPFVY 323 (323)
T ss_pred HHHHHHHHHHHHHHhccccccCceEecCccC
Confidence 9999999999999999999999999999986
No 6
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=100.00 E-value=4.9e-37 Score=251.58 Aligned_cols=101 Identities=42% Similarity=0.842 Sum_probs=97.5
Q ss_pred hhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy9586 127 VFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVW 206 (233)
Q Consensus 127 ~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~ 206 (233)
++|+.+|+++|.+|++||++|+++|++|+ ||+|++||||||++|+++|+||+++++++++++|++++++||.+|
T Consensus 50 ~~g~~~n~~~h~~L~~lr~~~~~~y~iP~------gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~~~~f~~~~~~~l~~~ 123 (150)
T PF02544_consen 50 LIGSIGNFYSHLILANLRKPGSKKYKIPK------GGLFEYVSCPHYFFEILIWIGFALLTGSWPSYAFALFVVVNLSPR 123 (150)
T ss_pred HHHHHHHHHHHHHHHhcccccCCceeCCC------CCCcceeeehhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 59999999999999999999998888777 899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhCCCCCCCceeeecccC
Q psy9586 207 ALGKHKNYKKEFPDYPKQRKAIVPFVI 233 (233)
Q Consensus 207 A~~~h~wY~~~F~~yp~~RkaiIPfi~ 233 (233)
|.++|+||+++|+|||++||++||||+
T Consensus 124 A~~~h~wY~~~F~~yp~~R~~lIPfi~ 150 (150)
T PF02544_consen 124 AVQTHRWYKKKFKEYPKNRKALIPFIF 150 (150)
T ss_pred HHHHHHHHHHHCccccCCCeEecCccC
Confidence 999999999999999999999999996
No 7
>KOG1640|consensus
Probab=99.97 E-value=8.2e-31 Score=230.84 Aligned_cols=174 Identities=27% Similarity=0.394 Sum_probs=136.2
Q ss_pred EEEecCCCccchhhhhhHHhhhhHHHHHHHHhccccccCCCCC--------------------CCchhHHHHHHHHHHHH
Q psy9586 54 VFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAA--------------------SKPYSYVAHLAALCYIV 113 (233)
Q Consensus 54 l~vkdlg~qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~l~~~~~~~ 113 (233)
+.++.+..+..|..+|.+ +|-+....++|+.....+....+ ....+....++..+...
T Consensus 56 ~~~~kf~VPK~wF~HFY~--i~vlw~~l~l~~~~~~~~~~~~~~~~h~fl~~~~~~~~~~~e~~~~~~~~~~~~~l~~s~ 133 (304)
T KOG1640|consen 56 LLVTKFTVPKRWFSHFYA--IGVLWNPLLLYFLLSTNFPIAMPSVEHRFLVILGVFIFKNIEEDLMYSLTLQVLLLIYSL 133 (304)
T ss_pred HHhHhhcCcHHHHHHHHH--HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 567888889999999987 45554444555544444332200 00111223445557899
Q ss_pred HHHHHHHhhh---------------------------------------ch----------------hhhHhhhhHHHHH
Q psy9586 114 HYTKRVLETL---------------------------------------TP----------------SVFCQLGNLSIHL 138 (233)
Q Consensus 114 Hy~kR~~et~---------------------------------------~p----------------~~~~~~~n~~~h~ 138 (233)
|-.+|++||. .| .++|.+.|..||.
T Consensus 134 ~~~rrlYet~fv~~~~~~s~mnl~hy~vg~V~y~vl~~~l~~~~~g~~~~~~~~~l~~i~q~~g~~iF~i~s~~Qy~~h~ 213 (304)
T KOG1640|consen 134 HTLRRLYETLFVLVYSVNSKMNLGHYLVGYVFYTVLSLALLLCTNGSSEGPNFNSLSSILQWLGLGIFAIGSIHQYASHE 213 (304)
T ss_pred HHHHHHHHHHHheeeeeccccchhhHHHHHHHHHHHHHHHHHhhcccccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 00 1788889999999
Q ss_pred HHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhC
Q psy9586 139 ALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEF 218 (233)
Q Consensus 139 ~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F 218 (233)
+|.|+|+... .-..|.+|+||||++||||||++||++|+|.+....++..|+.+.++++|++..|..+|+||+++|
T Consensus 214 iL~nlrk~~~----~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~~~iwLv~~~V~~N~t~aA~~Th~wY~~kF 289 (304)
T KOG1640|consen 214 ILGNLRKYPR----QAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPDLTIWLVFGWVAANLTYAALETHRWYLKKF 289 (304)
T ss_pred HHHHHhhhhh----hhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999865 234567777999999999999999999999999989999888888889998899999999999999
Q ss_pred CCCCCCceeeecccC
Q psy9586 219 PDYPKQRKAIVPFVI 233 (233)
Q Consensus 219 ~~yp~~RkaiIPfi~ 233 (233)
+|||++|+|+|||++
T Consensus 290 ~~yp~~R~AiiPfl~ 304 (304)
T KOG1640|consen 290 ENYPKNRHAIIPFLY 304 (304)
T ss_pred ccCcccccccccccC
Confidence 999999999999986
No 8
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.55 E-value=6.2e-15 Score=107.12 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.|||++|+++ .|++++||||++ +|+.|+|+++|++||+++|+|||+
T Consensus 18 v~~~~TV~~LK~~I~~~-~~~~~~~qrLi~--~Gk~L~D~~tL~~ygi~~~stv~l 70 (73)
T cd01791 18 CNPDDTIGDLKKLIAAQ-TGTRPEKIVLKK--WYTIFKDHISLGDYEIHDGMNLEL 70 (73)
T ss_pred eCCCCcHHHHHHHHHHH-hCCChHHEEEEe--CCcCCCCCCCHHHcCCCCCCEEEE
Confidence 57899999999999999 699999999999 799999999999999999999987
No 9
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.50 E-value=3.9e-14 Score=103.51 Aligned_cols=58 Identities=45% Similarity=0.711 Sum_probs=53.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
++++||+|||++|++++..++++||||++..+|+.|+|+++|+++|+++|+|||||||
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvKDL 77 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL 77 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEeeC
Confidence 4789999999999998556789999999888999999999999999999999999997
No 10
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.47 E-value=5.3e-14 Score=101.86 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||+|||++|+++ +|+|+++|||++ +|++|+|+++|++||+++++||++
T Consensus 15 v~~~~tV~~lK~~i~~~-~gip~~~q~Li~--~Gk~L~D~~tL~~~~i~~~~tl~l 67 (74)
T cd01793 15 VTGQETVSDIKAHVAGL-EGIDVEDQVLLL--AGVPLEDDATLGQCGVEELCTLEV 67 (74)
T ss_pred ECCcCcHHHHHHHHHhh-hCCCHHHEEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence 57899999999999999 899999999999 899999999999999999999986
No 11
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.45 E-value=8.6e-14 Score=100.23 Aligned_cols=53 Identities=26% Similarity=0.336 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||+|||++|+++ +|+|+++|||++ +|++|+|+++|++||+++|+|||+
T Consensus 15 v~~~~TV~~lK~~I~~~-~gi~~~~q~Li~--~G~~L~D~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 15 VSSKDTVGQLKKQLQAA-EGVDPCCQRWFF--SGKLLTDKTRLQETKIQKDYVVQV 67 (70)
T ss_pred ECCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence 47899999999999999 899999999999 999999999999999999999986
No 12
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.44 E-value=1.4e-13 Score=100.35 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=48.6
Q ss_pred CCcccHHHHHHHHHHHh-CCCC-cCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAK-SQLY-PDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~-~~i~-~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+.++||.+||++|+++. ++++ +++|||+| +||+|+|+++|++||+++|+|||+.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy--~GKiL~D~~TL~dygI~~gstlhLv 73 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH--CGRKLKDDQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEe--CCcCCCCCCcHHHcCCCCCCEEEEE
Confidence 35789999999999984 3575 99999999 9999999999999999999999873
No 13
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.41 E-value=2.3e-13 Score=98.41 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ .|+++++|||++ +|++|+|+++|++||++++++|++-
T Consensus 17 v~~~~tV~~lK~~i~~~-~gi~~~~q~L~~--~G~~L~d~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 17 VSEKESVSTLKKLVSEH-LNVPEEQQRLLF--KGKALADDKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred ECCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEECCCCCCHHHCCCCCCCEEEEE
Confidence 46899999999999999 899999999999 8999999999999999999999874
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.41 E-value=2.8e-13 Score=99.34 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++++||+|||++|+++ .|++++||||++ +|+.|+|+ +|++||+++|++|++
T Consensus 18 v~~~~TV~~LK~~I~~~-~~~~~~~qrL~~--~Gk~L~d~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 18 VPPDETVEGLKKRISQR-LKVPKERLALLH--RETRLSSG-KLQDLGLGDGSKLTL 69 (78)
T ss_pred ECCcCHHHHHHHHHHHH-hCCChHHEEEEE--CCcCCCCC-cHHHcCCCCCCEEEE
Confidence 47899999999999999 799999999999 89999999 999999999999986
No 15
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.40 E-value=3.1e-13 Score=97.82 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=50.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++++|+++
T Consensus 15 v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~--~G~~L~D~~tL~~~~i~~~~tl~l 67 (74)
T cd01810 15 VQLTQTVATLKQQVSQR-ERVQADQFWLSF--EGRPMEDEHPLGEYGLKPGCTVFM 67 (74)
T ss_pred ECCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCEECCCCCCHHHcCCCCCCEEEE
Confidence 47899999999999999 899999999999 899999999999999999999875
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.40 E-value=3.4e-13 Score=96.79 Aligned_cols=54 Identities=30% Similarity=0.455 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+++++||.+||++|+++ .|+++++|||++ +|++|+|+++|++||+++|+||++.
T Consensus 16 v~~~~TV~~lK~~I~~~-~~i~~~~~~Li~--~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 16 IAEDASVKDFKEAVSKK-FKANQEQLVLIF--AGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred ECCCChHHHHHHHHHHH-hCCCHHHEEEEE--CCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 46889999999999999 799999999999 8999999999999999999999863
No 17
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.39 E-value=3.5e-13 Score=96.37 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=51.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|+|||+-
T Consensus 15 v~~~~tV~~lK~~i~~~-~gi~~~~q~Li~--~G~~L~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 15 VDPDTDIKQLKEVVAKR-QGVPPDQLRVIF--AGKELRNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred ECCCChHHHHHHHHHHH-HCCCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 46899999999999999 899999999999 8999999999999999999999873
No 18
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.39 E-value=3.8e-13 Score=98.89 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=49.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++++||+|||++|+++ .|++++||||.+..+|++|+|+++|++||+++|++|++
T Consensus 19 v~~~~TV~~lK~~I~~~-~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l 73 (80)
T cd01792 19 LRDSMTVSELKQQIAQK-IGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLL 73 (80)
T ss_pred cCCCCcHHHHHHHHHHH-hCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEE
Confidence 47899999999999999 79999999993222899999999999999999999865
No 19
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.38 E-value=5e-13 Score=98.18 Aligned_cols=53 Identities=15% Similarity=0.336 Sum_probs=50.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++++||.+||++|+++ +|+++++|||++ +||.|+|+.+|++||+++|++|++
T Consensus 19 v~~~~TV~~lK~~i~~~-~gi~~~~QrLi~--~Gk~L~D~~tL~~y~i~~~~~i~l 71 (78)
T cd01797 19 LSRLTKVEELREKIQEL-FNVEPECQRLFY--RGKQMEDGHTLFDYNVGLNDIIQL 71 (78)
T ss_pred cCCcCcHHHHHHHHHHH-hCCCHHHeEEEe--CCEECCCCCCHHHcCCCCCCEEEE
Confidence 36789999999999999 899999999999 899999999999999999999986
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.35 E-value=1e-12 Score=94.60 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ +|+|+++|||++ +|+.|+|+ ++|++||+++|++|++.
T Consensus 16 v~~~~TV~~lK~~I~~~-~gip~~~q~Li~--~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 16 VDPDLELENFKALCEAE-SGIPASQQQLIY--NGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred ECCcCCHHHHHHHHHHH-hCCCHHHeEEEE--CCeEccCCcccHHHcCCCCCCEEEEe
Confidence 47889999999999999 899999999999 89999887 68999999999999975
No 21
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.33 E-value=1.5e-12 Score=100.53 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ +|+++++|||++ +|+.|+|+++|++||+++|+||++
T Consensus 44 V~~~~TV~~lK~kI~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~stL~l 96 (103)
T cd01802 44 VSPFETVISVKAKIQRL-EGIPVAQQHLIW--NNMELEDEYCLNDYNISEGCTLKL 96 (103)
T ss_pred eCCCCcHHHHHHHHHHH-hCCChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 57899999999999999 899999999999 899999999999999999999986
No 22
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.32 E-value=2.1e-12 Score=93.59 Aligned_cols=54 Identities=26% Similarity=0.443 Sum_probs=50.2
Q ss_pred CCCcccHHHHHHHHHHHhCCC--CcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQL--YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i--~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+++++||.+||++|+++ .|+ ++++|||++ +|+.|+|+++|++||+++|++|++-
T Consensus 17 v~~~~TV~~lK~~i~~~-~~i~~~~~~q~L~~--~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 17 VDPDDTVAELKEKIEEE-KGCDYPPEQQKLIY--SGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred ECCCCcHHHHHHHHHHh-hCCCCChhHeEEEE--CCEEccCCCCHHHcCCCCCCEEEEE
Confidence 46889999999999999 898 999999999 8999999999999999999998763
No 23
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.31 E-value=1.9e-12 Score=91.75 Aligned_cols=54 Identities=26% Similarity=0.501 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.+||++|+++ .++|+++|+|++ +|+.|+|+++|++||+++|++|++.
T Consensus 12 v~~~~tV~~lK~~i~~~-~~~~~~~~~L~~--~G~~L~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 12 VDPDDTVADLKQKIAEE-TGIPPEQQRLIY--NGKELDDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EETTSBHHHHHHHHHHH-HTSTGGGEEEEE--TTEEESTTSBTGGGTTSTTEEEEEE
T ss_pred ECCCCCHHHhhhhcccc-cccccccceeee--eeecccCcCcHHHcCCCCCCEEEEE
Confidence 46889999999999999 789999999999 9999999999999999999999863
No 24
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.31 E-value=2.5e-12 Score=91.53 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+++++||++||++|+++ .|+|+++|||.+ +|+.|+|+++|++||+++|++|++-
T Consensus 16 v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 16 ISSQATFGDLKKMLAPV-TGVEPRDQKLIF--KGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred ECCCCcHHHHHHHHHHh-hCCChHHeEEee--CCcccCccCcHHHcCCCCCCEEEEe
Confidence 46889999999999999 899999999999 8999999999999999999999863
No 25
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.31 E-value=2.8e-12 Score=94.56 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCCcccHHHHHHHHHHHhC-CCCcCceeEEEcCCCcccCCchhhhhcC--CCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKS-QLYPDRQAVRLEIKGKILKDSDDIKSLG--LKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~-~i~~~rQrL~~~~~Gk~L~d~ktL~~yg--v~~~~tl~vk 57 (233)
+++++||.|||++|++..+ ..++++|||+| +||+|+|+++|++|+ +++|.|||+.
T Consensus 20 ~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy--~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 20 CFLNWTVGELKTHLSRVYPSKPLEQDQRLIY--SGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred cCCcChHHHHHHHHHHhcCCCCChhHeEEEE--cCeeccchhhHHHHhhcccCCceEEEE
Confidence 4789999999999999743 35589999999 999999999999997 9999999974
No 26
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.30 E-value=3.2e-12 Score=91.90 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=50.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++++.||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 17 v~~~~tv~~lK~~i~~~-~g~~~~~qrL~~--~g~~L~d~~tl~~~~i~~g~~i~l 69 (76)
T cd01806 17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDDKTAADYKLEGGSVLHL 69 (76)
T ss_pred ECCCCCHHHHHHHHhHh-hCCChhhEEEEE--CCeEccCCCCHHHcCCCCCCEEEE
Confidence 46889999999999999 799999999999 899999999999999999999976
No 27
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.30 E-value=2.9e-12 Score=92.15 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=50.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++++||++||++|+++ .|+|+++|||.+ +|+.|+|+++|++||+++|++|++
T Consensus 17 v~~~~tV~~lK~~i~~~-~g~~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l 69 (76)
T cd01803 17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 69 (76)
T ss_pred ECCcCcHHHHHHHHHHH-hCCCHHHeEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 46889999999999999 899999999999 899999999999999999999876
No 28
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.29 E-value=3.2e-12 Score=93.09 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
+++++||++||++|++. .|+|+++|+|++ +|+.|+|+++|++||+++|++|++ +-.|+
T Consensus 14 v~~~~TV~~lK~~i~~~-~gip~~~q~L~~--~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 14 LQLSDPVSVLKVKIHEE-TGMPAGKQKLQY--EGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred ECCCCcHHHHHHHHHHH-HCCCHHHEEEEE--CCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 46889999999999998 899999999999 899999999999999999999875 44443
No 29
>PTZ00044 ubiquitin; Provisional
Probab=99.29 E-value=3.2e-12 Score=92.41 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=50.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++++||++||++|+++ .|+|+++|||.+ +|+.|+|+++|++||+++|++|++
T Consensus 17 v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~L~d~~~l~~~~i~~~~~i~l 69 (76)
T PTZ00044 17 FEPDNTVQQVKMALQEK-EGIDVKQIRLIY--SGKQMSDDLKLSDYKVVPGSTIHM 69 (76)
T ss_pred ECCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEEccCCCcHHHcCCCCCCEEEE
Confidence 46889999999999999 899999999999 899999999999999999999886
No 30
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.29 E-value=3.9e-12 Score=90.54 Aligned_cols=54 Identities=20% Similarity=0.441 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+++++||.+||++|+++ .|+++++|||.+ +|+.|+|+++|++||+++|++|++.
T Consensus 17 v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 17 VEEEITVLDLKEKIAEE-VGIPVEQQRLIY--SGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCEECCCcCcHHHCCCCCCCEEEEE
Confidence 46789999999999999 799999999999 8999999999999999999999874
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.22 E-value=1.2e-11 Score=89.93 Aligned_cols=56 Identities=27% Similarity=0.336 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||+|||++|+++ .++||+||+|++. .+|+.|+|+.+|++||+++|+.|++-
T Consensus 16 v~~~~Tv~~lK~~i~~~-tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 16 TLSEDTVLDLKQFIKTL-TGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred ECCCCCHHHHHHHHHHH-HCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 57899999999999999 8999999999963 27999999999999999999998763
No 32
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.22 E-value=1.3e-11 Score=90.14 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCC-CCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLK-NGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~-~~~tl~vk 57 (233)
|++++||++||++|+++ +|+||++||| + +|+.|. |+++|++||++ +|+++++-
T Consensus 19 v~~~~TV~~lK~kI~~~-~gip~~~QrL-~--~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 19 VRPDMTVAQLKDKVFLD-YGFPPAVQRW-V--IGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHEEE-E--cCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 47899999999999999 8999999999 8 798885 77899999998 88999873
No 33
>KOG0005|consensus
Probab=99.18 E-value=1.3e-11 Score=85.62 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=50.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++|+++|+.+|+.++++ +||||.+|||+| .||++.|++|-++|++..||.+|+
T Consensus 17 Iep~DkverIKErvEEk-eGIPp~qqrli~--~gkqm~DD~tA~~Y~~~~GSVlHl 69 (70)
T KOG0005|consen 17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--AGKQMNDDKTAAHYNLLGGSVLHL 69 (70)
T ss_pred eCcchHHHHHHHHhhhh-cCCCchhhhhhh--ccccccccccHHHhhhccceeEee
Confidence 47899999999999999 999999999999 899999999999999999999986
No 34
>KOG0004|consensus
Probab=99.16 E-value=1.2e-11 Score=100.93 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||+++|++|+++ +|||++||||++ .|++|+|+.+|+||+++..+|+++
T Consensus 17 ve~~~ti~~~Kakiq~~-egIp~dqqrlif--ag~qLedgrtlSDY~Iqkestl~l 69 (156)
T KOG0004|consen 17 VEANDTIDNVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 69 (156)
T ss_pred ecccccHHHHHHhhhcc-cCCCchhhhhhh--hhcccccCCccccccccccceEEE
Confidence 46889999999999999 999999999999 899999999999999999999985
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.10 E-value=1.5e-10 Score=80.94 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
+++++||.+||++|+++ .|+++++|+|.+ +|+.|+|+++|+++|+++|++|++.+.
T Consensus 14 ~~~~~ti~~lK~~i~~~-~~~~~~~~~l~~--~g~~l~d~~~l~~~~v~~~~~i~v~~~ 69 (69)
T cd01769 14 VSPDDTVAELKAKIAAK-EGVPPEQQRLIY--AGKILKDDKTLSDYGIQDGSTLHLVLR 69 (69)
T ss_pred ECCCChHHHHHHHHHHH-HCcChHHEEEEE--CCcCCCCcCCHHHCCCCCCCEEEEEEC
Confidence 35789999999999999 789999999999 899999999999999999999998763
No 36
>KOG0003|consensus
Probab=99.09 E-value=9.3e-12 Score=95.77 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=54.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEE--EecCCCcc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVF--IKDLGPQI 63 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~--vkdlg~qi 63 (233)
|+|++||++||++|+++ +|+||++|||++ +|++|+|+.|+++||++..+|++ .+-+|+-+
T Consensus 17 ~EpS~ti~~vKA~i~~~-~Gi~~~~~~L~~--~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i 78 (128)
T KOG0003|consen 17 VEPSDTIDNVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (128)
T ss_pred ecccchHHHHHHHhccc-cCCCHHHHHHHh--cccccccCCcccccCccchhhhhhhHHHhcCCC
Confidence 57999999999999999 999999999999 89999999999999999999876 47777743
No 37
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.09 E-value=1.1e-10 Score=80.63 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=45.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD 52 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~ 52 (233)
|++++||++||++|+++ .|+++++|||.+ +|+.|+|+++|++||+++|+
T Consensus 16 v~~~~tv~~lk~~i~~~-~~~~~~~~~L~~--~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 16 VKPSDTVSELKEKIAEL-TGIPVEQQRLIY--KGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred ECCCCcHHHHHHHHHHH-HCCCHHHEEEEE--CCEECCCCCCHHHcCCcCCC
Confidence 46889999999999999 799999999999 89999999999999999885
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.07 E-value=1.3e-10 Score=90.63 Aligned_cols=57 Identities=16% Similarity=0.034 Sum_probs=48.4
Q ss_pred CCCcccHHHHHHHHHHHh----CCCC--cCceeEEEcCCCcccCCchhhhhcC------CCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAK----SQLY--PDRQAVRLEIKGKILKDSDDIKSLG------LKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~----~~i~--~~rQrL~~~~~Gk~L~d~ktL~~yg------v~~~~tl~vkdl 59 (233)
+++++||++||++|++.. +++| +++|||+| .||+|+|++||++|+ ++..+|+|+.--
T Consensus 22 ~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy--sGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr 90 (113)
T cd01814 22 YPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS--AGKILENSKTVGECRSPVGDIAGGVITMHVVVQ 90 (113)
T ss_pred cChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe--CCeecCCCCcHHHhCCcccccCCCceEEEEEec
Confidence 468999999999999542 3455 99999999 999999999999999 778899987433
No 39
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.97 E-value=9.3e-10 Score=83.93 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|++++||.+||.+|..+ -+++|++|+|.+ +|+.|. |++||++||+.+|+.|+++-=-|
T Consensus 21 V~~~~TVg~LK~lImQ~-f~V~P~dQkL~~--dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 21 VSANQTLKELKIQIMHA-FSVAPFDQNLSI--DGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred eCccccHHHHHHHHHHH-hcCCcccceeee--cCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 57899999999999999 699999999999 599995 57899999999999999875444
No 40
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.96 E-value=1.1e-09 Score=81.81 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|.+++|+++||++++++ .|+++++|||+| +|+.|+|++|+++||+++|++|++
T Consensus 28 v~~~~~l~~l~~~y~~~-~gi~~~~~rf~f--~G~~L~~~~T~~~l~m~d~d~I~v 80 (87)
T cd01763 28 IKRSTPLKKLMEAYCQR-QGLSMNSVRFLF--DGQRIRDNQTPDDLGMEDGDEIEV 80 (87)
T ss_pred EcCCCHHHHHHHHHHHH-hCCCccceEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence 46889999999999999 899999999999 899999999999999999999976
No 41
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.95 E-value=1.4e-09 Score=80.85 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=51.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEE-EcCCCc---cc-CCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKGK---IL-KDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~-~~~~Gk---~L-~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
++++.||.+||++++.. .|++|+.|||. ++.+|. .| +|+++|++||+++|.+||+.|..|
T Consensus 19 ~~~~~Tv~~lK~kl~~~-~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~p 83 (84)
T cd01789 19 YSRGLTIAELKKKLELV-VGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVSG 83 (84)
T ss_pred cCCCCcHHHHHHHHHHH-HCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCCC
Confidence 46889999999999998 79999999996 543331 35 677899999999999999999876
No 42
>KOG0010|consensus
Probab=98.90 E-value=1.5e-09 Score=102.71 Aligned_cols=53 Identities=28% Similarity=0.500 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|+.++||+++|++|+.. -+.+++||+|+| .||+|||++||..|||+||.|||+
T Consensus 31 V~~~ssV~qlKE~I~~~-f~a~~dqlvLIf--aGrILKD~dTL~~~gI~Dg~TvHL 83 (493)
T KOG0010|consen 31 VASDSSVLQLKELIAQR-FGAPPDQLVLIY--AGRILKDDDTLKQYGIQDGHTVHL 83 (493)
T ss_pred cccchHHHHHHHHHHHh-cCCChhHeeeee--cCccccChhhHHHcCCCCCcEEEE
Confidence 56789999999999999 589999999999 899999999999999999999997
No 43
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=3.1e-09 Score=99.11 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCC---CCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~---i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.+||++|+++ .| +++++|||+| +||+|+|+++|++|||+++++|++-
T Consensus 17 V~~~~TV~dLK~kI~~~-~g~~~ip~~~QkLIy--~GkiL~Dd~tL~dy~I~e~~~Ivvm 73 (378)
T TIGR00601 17 MEPDETVKELKEKIEAE-QGKDAYPVAQQKLIY--SGKILSDDKTVREYKIKEKDFVVVM 73 (378)
T ss_pred eCCcChHHHHHHHHHHh-hCCCCCChhHeEEEE--CCEECCCCCcHHHcCCCCCCEEEEE
Confidence 57889999999999998 67 9999999999 8999999999999999999998764
No 44
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.84 E-value=2.8e-09 Score=79.39 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=47.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEc--CCCc---cc-CCchhhhhcCCCCCceEEEecCCCc
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLE--IKGK---IL-KDSDDIKSLGLKNGDMVFIKDLGPQ 62 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~--~~Gk---~L-~d~ktL~~ygv~~~~tl~vkdlg~q 62 (233)
+++.||.|||++++.. .|++|+.|||.+. .++. .+ +|+++|.+||+++|.+|++.|..|+
T Consensus 21 ~~~~Tv~eLK~kl~~~-~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~p~ 86 (87)
T PF14560_consen 21 PKSITVSELKQKLEKL-TGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTNPS 86 (87)
T ss_dssp ETTSBHHHHHHHHHHH-HTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T--
T ss_pred CCCCCHHHHHHHHHHH-hCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCCCC
Confidence 5789999999999999 7999999999875 3333 23 4678999999999999999999885
No 45
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=98.70 E-value=7.5e-08 Score=84.35 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhchhhhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHH
Q psy9586 99 PYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFG 178 (233)
Q Consensus 99 ~~~~~~~l~~~~~~~Hy~kR~~et~~p~~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil 178 (233)
+......++.+++. +|......+|.++.+-|++.++..++-+ .|+|+|+.+||||+|++
T Consensus 116 ~~~~~~~~g~~l~~---------------~g~~~E~~AD~Q~~~fk~~~~n~g~~~~------~GLw~~sRHPNYfGE~l 174 (235)
T PF06966_consen 116 PLNWLDILGIALFL---------------IGFLLETVADQQKYRFKKDPANKGKFCT------TGLWRYSRHPNYFGEIL 174 (235)
T ss_pred cchHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhCcccCCcccc------CCeeeeeeCchHHHHHH
Confidence 34444566666664 7888889999999999877553323444 79999999999999999
Q ss_pred HHHHHHHhhcc
Q psy9586 179 SWLSFSLLTSC 189 (233)
Q Consensus 179 ~w~~f~l~~~~ 189 (233)
.|.|+++++.+
T Consensus 175 ~W~g~~~~a~~ 185 (235)
T PF06966_consen 175 FWWGIYLAAIS 185 (235)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 46
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.38 E-value=3.5e-07 Score=65.19 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=47.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCc-CceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~-~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|.+++|+..|++.++++ .++++ +.++|.| +|+.|++++|++++|+++|++|.+.
T Consensus 17 v~~~~~~~~l~~~~~~~-~~i~~~~~~~l~f--dG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 17 VKPTTTVSKLIEKYCEK-KGIPPEESIRLIF--DGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EETTSCCHHHHHHHHHH-HTTTT-TTEEEEE--TTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred ECCCCcHHHHHHHHHHh-hCCCccceEEEEE--CCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 35789999999999999 79999 9999999 8999999999999999999999864
No 47
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=98.23 E-value=3.7e-06 Score=73.99 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=66.2
Q ss_pred ccchhhhhhHHhhhhHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhchhhhHhhhhHHHHHHHH
Q psy9586 62 QIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALR 141 (233)
Q Consensus 62 qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et~~p~~~~~~~n~~~h~~L~ 141 (233)
-.+.+.||.++++--.++-+-.|. ...-+. .+....+.++.++|. +|...-...|.+|-
T Consensus 114 ~~~l~~vf~lQ~ll~~ilalpi~~--a~~~~~----~~~~~~d~~g~~iwi---------------vg~~fE~lgD~QL~ 172 (272)
T COG3752 114 LKALFIVFGLQALLLFILALPIYL--AALNGP----REFGWWDVIGLAIWI---------------VGIVFEALGDAQLW 172 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCC----CCCcHHHHHHHHHHH---------------HHHHHHHhhHHHHH
Confidence 446677788876553333221121 000111 234455667777775 55555567899999
Q ss_pred hcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc
Q psy9586 142 DLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS 188 (233)
Q Consensus 142 ~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~ 188 (233)
..|++.....++-. .|++++...||||+|.+.|.||.+++-
T Consensus 173 ~Fk~~P~nkgkll~------~GLWr~tRHPNYFgE~l~Wwg~~Lia~ 213 (272)
T COG3752 173 VFKKDPRNKGKLLD------TGLWRWTRHPNYFGEALVWWGFYLIAI 213 (272)
T ss_pred HHHhChhhcccccc------ccceecccCcchHHHHHHHHHHHHHHH
Confidence 99987654445544 599999999999999999999999864
No 48
>KOG0011|consensus
Probab=98.22 E-value=1.2e-06 Score=79.49 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=48.9
Q ss_pred CCCcccHHHHHHHHHHHhCC--CCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQ--LYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~--i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+.|+.||.++|++|+.. .| +|+++|.|++ +||+|+|+.++.+|+++++.-|.+
T Consensus 17 v~Pe~tV~evK~kIet~-~g~dyP~~~QkLIy--~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 17 VKPEDTVVEVKKKIETE-KGPDYPAEQQKLIY--SGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred cCcchhHHHHHHHHHhc-cCCCCchhhheeee--cceeccCCcchhhhccccCceEEE
Confidence 46899999999999998 66 9999999999 999999999999999999987765
No 49
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.21 E-value=1.4e-06 Score=68.11 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=41.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKN 50 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~ 50 (233)
.+++||.|||+.|+.. -+-||+.|||.. ++.+|+|++||+|+|+.+
T Consensus 19 kes~tVlelK~~iegI-~k~pp~dQrL~k--d~qvLeD~kTL~d~g~t~ 64 (119)
T cd01788 19 KESTTVYELKRIVEGI-LKRPPEDQRLYK--DDQLLDDGKTLGDCGFTS 64 (119)
T ss_pred CCcccHHHHHHHHHHH-hcCChhHheeec--CceeecccccHHHcCccc
Confidence 5789999999999998 789999999983 778999999999999944
No 50
>KOG0001|consensus
Probab=98.18 E-value=4.1e-06 Score=57.78 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=48.7
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
.+..+|+.+|++|+.+ +++++++|++.+ .|+.|+|+.++.+|++..++++++.
T Consensus 17 ~~~~~i~~~k~~i~~~-~~~~~~~q~~~~--~~~~l~d~~~l~~~~i~~~~~~~l~ 69 (75)
T KOG0001|consen 17 SPSDTIEVVKAKIRDK-EGIPVDQQRLIF--GGKPLEDGRTLADYNIQEGSTLHLV 69 (75)
T ss_pred cCCCHHHHHHHHHHhh-cCCCCeeEEEEE--CCEECcCCCcHHHhCCCCCCEEEEE
Confidence 4678999999999999 899999999988 8899999999999999999999864
No 51
>KOG4248|consensus
Probab=98.07 E-value=3.7e-06 Score=85.61 Aligned_cols=60 Identities=15% Similarity=0.470 Sum_probs=54.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCCccc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIG 64 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~qi~ 64 (233)
|+..+||+++|+.|.++ -.|+.+.||||+ .|++|.|+|++++||| ||-+||+.|-.|.=.
T Consensus 19 ig~q~ti~~~~d~~r~~-~ni~s~~qr~i~--~grvl~~~k~vq~~~v-dgk~~hlverppp~~ 78 (1143)
T KOG4248|consen 19 IGAQMTIKEFKDHIRAS-VNIPSEKQRLIY--QGRVLQDDKKVQEYNV-DGKVIHLVERPPPQT 78 (1143)
T ss_pred echHHHHHHHHHHHHHh-cccccccceeee--cceeeccchhhhhccC-CCeEEEeeccCCCCc
Confidence 35678999999999999 799999999999 9999999999999999 999999999876443
No 52
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.01 E-value=1.5e-05 Score=51.88 Aligned_cols=54 Identities=33% Similarity=0.530 Sum_probs=48.4
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
++++|+.+||+++.++ .|.++++|+|.+ +|..++++..+.++++.+++++++..
T Consensus 15 ~~~~tv~~l~~~i~~~-~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 15 PSGTTVADLKEKLAKK-LGLPPEQQRLLV--NGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCCcHHHHHHHHHHH-HCcChHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4689999999999999 579999999998 89999988888999999999998764
No 53
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=97.86 E-value=0.00019 Score=54.48 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=61.3
Q ss_pred hhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy9586 127 VFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVW 206 (233)
Q Consensus 127 ~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~ 206 (233)
++|......+...++.-+....... ...+...-.+|.|++|..|-|++.++.++|.+++++++..++.++.....+...
T Consensus 11 ~~g~~l~~~~~~~l~~~~~~~~~~~-~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~~~~~~~~ 89 (106)
T PF04191_consen 11 LAGIALAIWAFKALGRFGTYYGDFF-GREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLAFLLYYIF 89 (106)
T ss_pred HHHHHHHHHHHHHHHhcCeecCCcc-cccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3455555666666655543311110 011112334799999999999999999999999999888765554444444444
Q ss_pred HH-HHhHHHHhhCCC-C
Q psy9586 207 AL-GKHKNYKKEFPD-Y 221 (233)
Q Consensus 207 A~-~~h~wY~~~F~~-y 221 (233)
+. .-.++.+++|+| |
T Consensus 90 ~~~~EE~~L~~~fG~~Y 106 (106)
T PF04191_consen 90 IIRFEERFLERRFGEEY 106 (106)
T ss_pred HHHhHHHHHHHHhCcCC
Confidence 44 667888899986 5
No 54
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.84 E-value=9.1e-06 Score=60.02 Aligned_cols=57 Identities=33% Similarity=0.521 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCC-ccc--CCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G-k~L--~d~ktL~~ygv~~~~tl~vkd 58 (233)
+++++|+.+||++|+++ -+++.+.|.|..+.++ +.+ .++++|+++|++.|+-||++.
T Consensus 20 ~~~~~t~~~L~~kI~~~-l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 20 VSPSSTLSDLKEKISEQ-LSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP 79 (80)
T ss_dssp E-TTSBHHHHHHHHHHH-S---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred cCCcccHHHHHHHHHHH-cCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence 46899999999999999 6899999988765444 345 467899999999999999874
No 55
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=97.75 E-value=0.00016 Score=68.80 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=77.7
Q ss_pred hhHhhhhHHHHHHHHhcCCCCCccc-----ccc--cCCCCCCCCccceecccchhhHHHHHHHHHHhhc--chhHHHHHH
Q psy9586 127 VFCQLGNLSIHLALRDLRPPGTNVR-----RIP--VATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS--CFPALLFAS 197 (233)
Q Consensus 127 ~~~~~~n~~~h~~L~~LR~~~~~~~-----~ip--~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~--~~~~~~f~~ 197 (233)
++|-..+-.++.+-.+-|++++... .++ +|.+.=-.||..++..|||++|+++-+++++.++ +...+...+
T Consensus 312 ~~gy~i~r~sn~QK~~FR~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~~~~pyfy~~ 391 (432)
T PF01222_consen 312 LVGYYIFRGSNSQKNRFRRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGFSSILPYFYPI 391 (432)
T ss_pred HHHHHHHHHhchhHHHhcCCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 4677777778888888886543211 122 2222333599999999999999999999999876 556666666
Q ss_pred HHHHHHHHHHHHHhHHHHhhCCC----CCC-CceeeecccC
Q psy9586 198 AGMYQMTVWALGKHKNYKKEFPD----YPK-QRKAIVPFVI 233 (233)
Q Consensus 198 ~~~~~m~~~A~~~h~wY~~~F~~----yp~-~RkaiIPfi~ 233 (233)
+.+.-+.-||..-++.=++|.++ |-+ =+..+||+|+
T Consensus 392 ~~~~lL~hR~~RD~~rC~~KYG~~W~~Yc~~Vpy~~iP~iy 432 (432)
T PF01222_consen 392 FFTILLIHRARRDEERCRKKYGKDWDEYCKRVPYRIIPGIY 432 (432)
T ss_pred HHHHHHhhhHHHHHHHHHHhhCHHHHHHHHhCCEEEeCCcC
Confidence 67778888999887776777753 653 5689999986
No 56
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.59 E-value=0.00013 Score=57.21 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=36.9
Q ss_pred CCcccHHHHHHHHHHHhC------CCCcCceeEEEcCCCcccCCchhhhhcCCCCCc
Q psy9586 2 SGSFTVKDIKKEVHKAKS------QLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD 52 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~------~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~ 52 (233)
++++||.+||+.|-..-+ -..++..||++ .||.|+|+++|+++++..|.
T Consensus 21 ~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~--~GriL~d~~tL~~~~~~~~~ 75 (111)
T PF13881_consen 21 DPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY--AGRILEDNKTLSDCRLPSGE 75 (111)
T ss_dssp -TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE--TTEEE-SSSBTGGGT--TTS
T ss_pred CccChHHHHHHHHHHHCccccccCCCChhhEEEEe--CCeecCCcCcHHHhCCCCCC
Confidence 578999999999986521 12467889999 99999999999999987655
No 57
>KOG4495|consensus
Probab=97.45 E-value=9.2e-05 Score=56.29 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNG 51 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~ 51 (233)
+++.||.|||.+++.. .+=|++.|||..-+....|+|+++|.|+|..+.
T Consensus 19 ~es~tV~elK~~l~gi-~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~ 67 (110)
T KOG4495|consen 19 KESSTVFELKRKLEGI-LKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQ 67 (110)
T ss_pred CccccHHHHHHHHHHH-HhCCCcchheeecCHHHHhhccchhhhcccccc
Confidence 5789999999999998 677999999986445578899999999976543
No 58
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00042 Score=58.74 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=59.2
Q ss_pred CCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHHHHHHhHHHHhhCCC----CCCCceeeeccc
Q psy9586 162 TSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQM-TVWALGKHKNYKKEFPD----YPKQRKAIVPFV 232 (233)
Q Consensus 162 gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m-~~~A~~~h~wY~~~F~~----yp~~RkaiIPfi 232 (233)
+|.|++|..|-|++-++.++|..+...|+.+++.+......+ ..++..-.+..+++|+| |.++-+..||.+
T Consensus 110 tG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~~~~~i~~EEr~L~~~fg~~Y~~Y~~rV~r~iP~~ 185 (187)
T COG2020 110 TGPYSIVRHPIYLGLLLFALGTGLLLGSLWALLIFVVLVALLFLFRIREEERYLRAEFGDEYREYRKRVPRLIPPL 185 (187)
T ss_pred cCCcceecCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhCCccCCCC
Confidence 799999999999999999999999888888776665555555 67788888888899976 677778888875
No 59
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.99 E-value=0.0021 Score=46.83 Aligned_cols=56 Identities=13% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CC--cccCCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KG--KILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~G--k~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
|+|..+|..+|++|.+. -++ +.+|||.+.+ +| ..|.+.++|++||+=.+..|.+.+
T Consensus 17 vnPy~pI~k~K~kI~~~-~~~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 17 VNPYSPIRKIKEKIRRS-RNC-SGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred eCCcchHHHHHHHHHHh-hCc-ccceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 57889999999999987 555 4599999864 33 345888999999998877776644
No 60
>KOG1872|consensus
Probab=96.88 E-value=0.0014 Score=62.42 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++.++|+.++|+++... .|.+|+||++.. +|+.++|+-.+...++++|.|+++
T Consensus 20 l~~d~t~~vlKaqlf~L-TgV~PeRQKv~v--KGg~a~dd~~~~al~iKpn~~lmM 72 (473)
T KOG1872|consen 20 LSTDETPSVLKAQLFAL-TGVPPERQKVMV--KGGLAKDDVDWGALQIKPNETLMM 72 (473)
T ss_pred ccCCCchHHHHHHHHHh-cCCCccceeEEE--ecccccccccccccccCCCCEEEe
Confidence 35788999999999999 999999999988 899999987888999999999987
No 61
>KOG3493|consensus
Probab=96.44 E-value=0.00071 Score=47.92 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.+++||.|+|+.|+.+ .|-.+++..|.- -+..++|.-+|++|.+.+|..+.+
T Consensus 19 n~dDtiGD~KKliaaQ-tGT~~~kivl~k--~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 19 NTDDTIGDLKKLIAAQ-TGTRPEKIVLKK--WYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred CCcccccCHHHHHHHh-hCCChhHhHHHh--hhhhhhcccceeeEEeccCccEEE
Confidence 5789999999999999 899998887752 466779999999999999976643
No 62
>KOG0006|consensus
Probab=96.35 E-value=0.0028 Score=57.84 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=50.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|+.++.|.+||+.++++ .|+|+++-|++| .||-|.|+.+++.+.+...+.+|+--+-|
T Consensus 20 v~~~t~I~~lke~Vak~-~gvp~D~L~viF--aGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 20 VDSDTSIFQLKEVVAKR-QGVPADQLRVIF--AGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred EecCCCHHHHHHHHHHh-hCCChhheEEEE--eccccccCceeecccccccchhhhhccCc
Confidence 46788999999999999 899999999999 89999999999977777777777655544
No 63
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.22 E-value=0.0035 Score=45.72 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=37.2
Q ss_pred CCcccHHHHHHHHHHHhCCCCc---Cce-eEEEc-CCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYP---DRQ-AVRLE-IKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~---~rQ-rL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+.+.+|++|...+.+. -+.+. ..+ .+.+. .+|..|+++++|+++||.||+.+++.
T Consensus 20 P~~vpv~~li~~l~~~-~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 20 PADVPVAELIPELVEL-LGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp ETTSBTTHHHHHHHHH-S---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred CCCCcHHHHHHHHHHH-hCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 4677899999988886 34432 322 35565 68999999999999999999999863
No 64
>KOG1435|consensus
Probab=96.16 E-value=0.0087 Score=56.55 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=68.3
Q ss_pred hhHhhhhHHHHHHHHhcCCCCCcc--------cccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc--chhHHHHH
Q psy9586 127 VFCQLGNLSIHLALRDLRPPGTNV--------RRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS--CFPALLFA 196 (233)
Q Consensus 127 ~~~~~~n~~~h~~L~~LR~~~~~~--------~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~--~~~~~~f~ 196 (233)
+.|...+-.|+.+-..-|+..++. +. -+|.+.=-.||..++..|||++|+++=++|++.++ +..+..+.
T Consensus 308 l~gyyifr~an~QK~~FRkn~~~~~~~~i~~i~t-~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~s~lpyfy~ 386 (428)
T KOG1435|consen 308 LLGYYIFRGANAQKNEFRKNPGDPKLKNIKTIYT-STGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFNSPLPYFYP 386 (428)
T ss_pred HhheeEeeccchhHHHHhcCCCCCccccccceEe-ccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccCCCCcchHHH
Confidence 334444556777777777753211 00 01222333699999999999999999999999876 55555556
Q ss_pred HHHHHHHHHHHHHHh----HHHHhhCCCC-CCCceeeecccC
Q psy9586 197 SAGMYQMTVWALGKH----KNYKKEFPDY-PKQRKAIVPFVI 233 (233)
Q Consensus 197 ~~~~~~m~~~A~~~h----~wY~~~F~~y-p~~RkaiIPfi~ 233 (233)
++.+.-+.-||..-. ..|.+-+++| ++-+..+||+|+
T Consensus 387 iyf~~LLvhR~~RDe~rC~~KYG~~W~~Yc~~VpyriiP~Vy 428 (428)
T KOG1435|consen 387 IYFTLLLVHRAARDEHRCRSKYGEDWEEYCRKVPYRILPYVY 428 (428)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhHHHHHhhCCcccCCCCC
Confidence 566666666765543 2344444455 456789999986
No 65
>KOG4650|consensus
Probab=96.06 E-value=0.014 Score=51.73 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=26.3
Q ss_pred CCCCccceecccchhhHHHHHHHHHHhhc
Q psy9586 160 PFTSLFDYVSCPNYTYEFGSWLSFSLLTS 188 (233)
Q Consensus 160 P~gglF~~VscPnY~~Eil~w~~f~l~~~ 188 (233)
...|+|+|...|||++|-+.|.|+.+.+.
T Consensus 216 ~d~GlwrySRHPNylgEqL~Wwglyvfa~ 244 (311)
T KOG4650|consen 216 CDVGLWRYSRHPNYLGEQLLWWGLYVFAA 244 (311)
T ss_pred ccccceeeccCccHHHHHHHHHHHHHHHh
Confidence 44699999999999999999999999865
No 66
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.01 E-value=0.011 Score=45.30 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHHHh-CCCCcCceeEEEcCCCcccCCchhhh
Q psy9586 3 GSFTVKDIKKEVHKAK-SQLYPDRQAVRLEIKGKILKDSDDIK 44 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~-~~i~~~rQrL~~~~~Gk~L~d~ktL~ 44 (233)
.++||.+||++|-++. +...-.|+||++ +|+.|.|+..|.
T Consensus 22 ~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~--~Gr~L~d~t~l~ 62 (97)
T PF10302_consen 22 NTTTVAWLKQLIRERLPPEPSRRRLRLIY--AGRLLNDHTDLS 62 (97)
T ss_pred CcccHHHHHHHHHhhcCCCCccccEEeee--cCcccCccchhh
Confidence 6789999999999985 345557788888 999999887664
No 67
>KOG3206|consensus
Probab=95.16 E-value=0.042 Score=47.48 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEc----CCCcccC-CchhhhhcCCCCCceEEEecCCCccc
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLE----IKGKILK-DSDDIKSLGLKNGDMVFIKDLGPQIG 64 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~----~~Gk~L~-d~ktL~~ygv~~~~tl~vkdlg~qi~ 64 (233)
+++.||+++|.+++.. .|-+++..+|-+- ..+-.|+ +++.|..|++.||--||+.|..+|-.
T Consensus 20 ~~~ltl~q~K~KLe~~-~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~ 86 (234)
T KOG3206|consen 20 SNSLTLAQFKDKLELL-TGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSI 86 (234)
T ss_pred CCcCcHHHHHhhhhhh-hCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccc
Confidence 5788999999999998 8999999998752 2334565 46689999999999999999998744
No 68
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=94.53 E-value=0.23 Score=37.49 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=31.2
Q ss_pred CCccceecccchhhHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHh
Q psy9586 162 TSLFDYVSCPNYTYEFGSWLSFSLLTSCF--PALLFASAGMYQMTVWALGKH 211 (233)
Q Consensus 162 gglF~~VscPnY~~Eil~w~~f~l~~~~~--~~~~f~~~~~~~m~~~A~~~h 211 (233)
.|.|++|..|+|++-++..++...+..+. .++++.......+..|...-.
T Consensus 38 ~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~RI~~EE 89 (94)
T PF04140_consen 38 SGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWLLFVRIREEE 89 (94)
T ss_dssp SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999877777776665544 344443333334445554433
No 69
>KOG0013|consensus
Probab=94.52 E-value=0.054 Score=46.92 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=44.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCce
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDM 53 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~t 53 (233)
+.-+|+.++|.+++.+ ++.++--||+.+ +|+.|.|...|+++++.+|.-
T Consensus 164 ~~~Dtv~eik~~L~Aa-eg~D~~sQrif~--Sg~~l~dkt~LeEc~iekg~r 212 (231)
T KOG0013|consen 164 PHYDTVGEIKRALRAA-EGVDPLSQRIFF--SGGVLVDKTDLEECKIEKGQR 212 (231)
T ss_pred cCcCcHHHHHHHHHHh-hccchhhheeec--cCCceeccccceeeeecCCCE
Confidence 3567999999999999 999999999998 999999999999999999954
No 70
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.62 E-value=0.17 Score=36.89 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=40.6
Q ss_pred CCCcccHHHHHHHHHHHhCC-CCcCceeEEEcCCCcccCCchhhhhc-CCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQ-LYPDRQAVRLEIKGKILKDSDDIKSL-GLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~-i~~~rQrL~~~~~Gk~L~d~ktL~~y-gv~~~~tl~vk 57 (233)
|+++++|.|+++.+... +. -.-..-.|.+ +|+.|+|...|++. |+++|+++.++
T Consensus 1 v~~~d~v~dvrq~L~~~-~~t~~~Tn~~L~~--~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-PETCYLTNFSLEH--NGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhC-ccccceeEEEEEE--CCCccCCchhhhhhhCCCCCcEEEEE
Confidence 67899999999999887 32 2223335556 89999888777665 47889998876
No 71
>KOG1769|consensus
Probab=93.43 E-value=0.22 Score=38.20 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
-+++..-|.+...++ .|++.+..|+.| +|+.+++.+|=++++.++|++|.+
T Consensus 39 r~t~LkKLM~aYc~r-~Gl~~~s~RFlF--dG~rI~~~~TP~~L~mEd~D~Iev 89 (99)
T KOG1769|consen 39 RHTPLKKLMKAYCER-QGLSMNSLRFLF--DGQRIRETHTPADLEMEDGDEIEV 89 (99)
T ss_pred cCChHHHHHHHHHHH-cCCccceEEEEE--CCcCcCCCCChhhhCCcCCcEEEE
Confidence 456788888999998 899999999999 799999999999999999999865
No 72
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=91.09 E-value=0.49 Score=37.69 Aligned_cols=55 Identities=29% Similarity=0.415 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHHH---hCCCCcCcee------EEEc---------------CCCccc---CCchhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKA---KSQLYPDRQA------VRLE---------------IKGKIL---KDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~---~~~i~~~rQr------L~~~---------------~~Gk~L---~d~ktL~~ygv~~~~tl~v 56 (233)
+.||.||++.+.+. -+|++|=|-. +... +++=.| +|+++|.++||.++++|-+
T Consensus 26 ~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nETEiSf 105 (122)
T PF10209_consen 26 DTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENETEISF 105 (122)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccceeee
Confidence 78999988877664 2577665542 1111 122356 6778999999999999976
Q ss_pred ec
Q psy9586 57 KD 58 (233)
Q Consensus 57 kd 58 (233)
-+
T Consensus 106 F~ 107 (122)
T PF10209_consen 106 FN 107 (122)
T ss_pred eC
Confidence 43
No 73
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.23 E-value=1 Score=33.35 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=41.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC--------CchhhhhcCCCCCceEEEecC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--------DSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~--------d~ktL~~ygv~~~~tl~vkdl 59 (233)
..+.||++|.+-++.. +-.++.-+|...=-.|.+. ++.||+|.|+.+..+|.|.|+
T Consensus 22 ~~~~tl~~l~~fv~~~--~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~d~ 85 (85)
T cd01774 22 LFTQSLRVIHDFLFSL--KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQDL 85 (85)
T ss_pred CCCCcHHHHHHHHHhC--CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEecC
Confidence 3578999999999764 4456777776531235664 356999999999999999885
No 74
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.03 E-value=1.3 Score=32.05 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC---chhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d---~ktL~~ygv~~~~tl~vk 57 (233)
++++||+||.+-+... .+.....-.|.-.--.+.+.| ++||+|.|+...++|.++
T Consensus 22 ~~~~tl~~v~~~v~~~-~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 22 PSSDTLRTVYEFVSAA-LTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CCCCcHHHHHHHHHHc-ccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 4789999999999654 455555566654323567753 479999999988888774
No 75
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=90.01 E-value=0.94 Score=32.10 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=35.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|.|++|+.|+-++--++ -|+++++=.|.. ++|.|+-+-.+.-.|+-+|+++.+
T Consensus 13 vtp~~~l~~VL~eac~k-~~l~~~~~~L~h--~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 13 VTPNTTLNQVLEEACKK-FGLDPSSYDLKH--NNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp --TTSBHHHHHHHHHHH-TT--GGG-EEEE--TTEEESSS-BHHHH---SS-EEEE
T ss_pred ECCCCCHHHHHHHHHHH-cCCCccceEEEE--CCEEeccccceeecCCCCCCEEeC
Confidence 46889999977776666 589999778888 889999888999999999998764
No 76
>KOG2628|consensus
Probab=88.50 E-value=1.6 Score=37.43 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=64.0
Q ss_pred hHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q psy9586 128 FCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS-CFPALLFASAGMYQMTVW 206 (233)
Q Consensus 128 ~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~-~~~~~~f~~~~~~~m~~~ 206 (233)
+-.++....|..-.+-+. +.++-+ .|.+.|+..|-|.+=++-++|-.++.. .+..++|++++......|
T Consensus 101 mitag~~f~H~va~~k~~----~h~lv~------~GvY~y~RHPsY~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~R 170 (201)
T KOG2628|consen 101 MITAGTSFTHYVATKKVS----DHKLVT------SGVYAYVRHPSYVGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADR 170 (201)
T ss_pred HHHHHHHHHHHHhhcccc----CceeEe------ccchhheeCchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhh
Confidence 334466677765543222 223444 699999999999998888888777654 445566777777777888
Q ss_pred HHHHhHHHHhhCCC----CCCCceeeeccc
Q psy9586 207 ALGKHKNYKKEFPD----YPKQRKAIVPFV 232 (233)
Q Consensus 207 A~~~h~wY~~~F~~----yp~~RkaiIPfi 232 (233)
+....+-..+-|++ |.++-+.=|||+
T Consensus 171 i~~EE~~Li~fFg~~Y~eY~kkV~sGiPfi 200 (201)
T KOG2628|consen 171 IKEEEKYLISFFGSSYVEYAKKVPSGIPFI 200 (201)
T ss_pred hhHHHHHHHHHhhHHHHHHHHhCCcCCCCC
Confidence 88777766666653 555444558886
No 77
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=88.34 E-value=1.2 Score=32.04 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=38.9
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCc-eeEEEcCCCcccCC--chhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDR-QAVRLEIKGKILKD--SDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~r-QrL~~~~~Gk~L~d--~ktL~~ygv~~~~tl~vk 57 (233)
.+++||.+|.+-+..+ ..-+... -.|...--.+.+.+ +++|+|.|+..+++|+++
T Consensus 24 ~~~~tl~~l~~~v~~~-~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 24 PKSDTLQDLYDFVESQ-LFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSBHHHHHHHHHHH-HHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCcchHHHHHHHHHHh-cCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 3688999999999887 3333332 46654323566643 369999999999999875
No 78
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=86.19 E-value=3.1 Score=29.72 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=36.0
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC---CchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~---d~ktL~~ygv~~~~tl~vk 57 (233)
++++||+||.+-+... . .....-+|.-.--.+.+. +++||+|.|+. .+++.++
T Consensus 20 ~~~~tl~~l~~fv~~~-~-~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 20 NSTHKLSDVRDFVESN-G-PPAEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred CCCCCHHHHHHHHHHc-C-CCCCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4689999999999875 2 234445665432356664 46799999999 4555544
No 79
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=84.83 E-value=3.1 Score=34.75 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=41.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCce-eEEEcCCCccc-CCchhhhhcCCCCCc------eEEEecCCCccc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQ-AVRLEIKGKIL-KDSDDIKSLGLKNGD------MVFIKDLGPQIG 64 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQ-rL~~~~~Gk~L-~d~ktL~~ygv~~~~------tl~vkdlg~qi~ 64 (233)
+++++||.||+..|.+. .+++++.| .|....+|+.. +++..+.++...+++ .+.+.-.|+.=|
T Consensus 21 lp~~ttv~dL~~~l~~~-~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~l~~rl~GGKGG 91 (162)
T PF13019_consen 21 LPSTTTVSDLKDRLSER-LPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLRLSLRLRGGKGG 91 (162)
T ss_pred CCCCCcHHHHHHHHHhh-cCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEEEEEeccCCCcc
Confidence 35789999999999998 67777775 35543344332 455566666655443 355677777655
No 80
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=84.62 E-value=2 Score=30.85 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+||.||++.+.++++++-..+..+...-+|+...+ +.-+++|++|.+
T Consensus 27 ~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai 73 (80)
T TIGR01682 27 TTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAF 73 (80)
T ss_pred cCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEE
Confidence 79999999999986543222232332226666654 456788888765
No 81
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=83.99 E-value=1.5 Score=31.91 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=34.9
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEE----cCCCcccCCchhhhhcCCCCCceE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRL----EIKGKILKDSDDIKSLGLKNGDMV 54 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~----~~~Gk~L~d~ktL~~ygv~~~~tl 54 (233)
+++.|+.+|+++|.+++.+++|+.+-+.. ++.|=.|+.+-+.+|. ..++++|
T Consensus 10 ~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~v 65 (73)
T PF10407_consen 10 DPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVV 65 (73)
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEE
Confidence 68899999999999999999998876654 2344444444344332 2344444
No 82
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=83.21 E-value=3.9 Score=29.77 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCce
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDM 53 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~t 53 (233)
+.++||.||.+-+....+.-....-.|...=-+|.|. +++||+|.|+.+.+.
T Consensus 22 ~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 22 NSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 4679999999999876222112334454321245664 477999999986443
No 83
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.89 E-value=4.1 Score=34.16 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=41.4
Q ss_pred CCCCCCccceecccchhh-HHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHhHHHH
Q psy9586 158 SNPFTSLFDYVSCPNYTY-EFGSWLSFSLLTSC-FPALLFASAGMYQMTVWALGKHKNYK 215 (233)
Q Consensus 158 ~~P~gglF~~VscPnY~~-Eil~w~~f~l~~~~-~~~~~f~~~~~~~m~~~A~~~h~wY~ 215 (233)
.+=+.|+|+++-.|||+. =+.+=+|..+.++- .++.+|..+-+.-+..|-++-.+-..
T Consensus 107 ~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~p~ya~~L~vRIr~EekaL~ 166 (172)
T COG1755 107 QIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFSPIYALLLYVRIRQEEKALA 166 (172)
T ss_pred eeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 333469999999999999 66677899998874 35566666666667776666555433
No 84
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=81.23 E-value=1.4 Score=31.82 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+..+||++|++.+.++++++...++...+..+|+..++ +.-+++|++|-+
T Consensus 26 ~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai 75 (82)
T PLN02799 26 PAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAI 75 (82)
T ss_pred CCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEE
Confidence 45789999999998875554433333333336766543 345678888765
No 85
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=81.20 E-value=3.8 Score=28.93 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=31.0
Q ss_pred CCcccHHHHHHHHHHHhCC---CCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~---i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+.+.||.||.+++.++++. ...+..++.. +|+..+ .+.-+++|++|.+
T Consensus 23 ~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~v--Ng~~v~-----~~~~l~~gD~v~i 73 (80)
T cd00754 23 PEGATVGELLDALEARYPGLLEELLARVRIAV--NGEYVR-----LDTPLKDGDEVAI 73 (80)
T ss_pred CCCCcHHHHHHHHHHHCchHHHhhhhcEEEEE--CCeEcC-----CCcccCCCCEEEE
Confidence 3468999999999887432 1112223334 777766 3456788888865
No 86
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.16 E-value=5.9 Score=28.66 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=37.9
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC---chhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d---~ktL~~ygv~~~~tl~vk 57 (233)
++++|++||.+-++.. .+ ....-.|.-.=-.|.+.+ ++||+|.|+....+|++.
T Consensus 22 ~~~~tl~~v~~fV~~~-~~-~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 22 KAREQLAAVRLFVELN-TG-NGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCChHHHHHHHHHHc-CC-CCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4689999999999875 32 223345553223566743 579999999999998774
No 87
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=78.99 E-value=1 Score=31.62 Aligned_cols=51 Identities=35% Similarity=0.444 Sum_probs=35.5
Q ss_pred CCcccHHHHHHHHHHHhCCCC-cCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLY-PDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~-~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+...||.||.+++.++++++. ..+-++.. +|+..++ .-.+.-+++|++|.+
T Consensus 19 ~~~~tv~~ll~~l~~~~p~~~~~~~~~v~v--N~~~v~~--~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 19 PEGSTVRDLLEALAERYPELALRDRVAVAV--NGEIVPD--DGLDTPLKDGDEVAI 70 (77)
T ss_dssp SSTSBHHHHHHHHCHHTGGGHTTTTEEEEE--TTEEEGG--GTTTSBEETTEEEEE
T ss_pred CCCCcHHHHHHHHHhhccccccCccEEEEE--CCEEcCC--ccCCcCcCCCCEEEE
Confidence 467899999999988854332 13334444 8888877 255667788998865
No 88
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=77.02 E-value=5.6 Score=28.92 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHhCCCCc----C------ceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYP----D------RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~----~------rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.+||.||.+.+.+++++... + ..++.. +|+..+++.. ..+++|++|.+
T Consensus 24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~v--N~~~v~~~~~---~~l~dgdev~i 81 (88)
T TIGR01687 24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILV--NGRNVDWGLG---TELKDGDVVAI 81 (88)
T ss_pred CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEE--CCEecCccCC---CCCCCCCEEEE
Confidence 67999999999988653221 1 122333 5665543321 46788988865
No 89
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=76.19 E-value=6.4 Score=37.91 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=40.8
Q ss_pred CCcccHHHHHHHHHHHhCCC----CcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 2 SGSFTVKDIKKEVHKAKSQL----YPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i----~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
+.+..|.|+--.+.+. .+- +....+..+. .+|..|+.+.||++.|+.||+++++.-
T Consensus 19 Pa~~PvaellP~ll~~-~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 19 PADVPVAELIPDLVDL-LDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred CCCCcHHHHHHHHHHH-hCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 5677888888877775 221 1223344443 478999999999999999999999854
No 90
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=75.85 E-value=11 Score=28.00 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=41.8
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc---CCchhhhhcCCCCCceEEEecC
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL---KDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L---~d~ktL~~ygv~~~~tl~vkdl 59 (233)
.+.|+++|..-++.. |.+++...|.-.==.|++ +.+.||+|.|+....+|+|.|-
T Consensus 24 ~~~~L~~v~~fv~~~--g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 24 EQAKLLALVRHVQSK--GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCCcHHHHHHHHHhc--CCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 568999999888774 678888888642124555 3357999999999999999874
No 91
>KOG4583|consensus
Probab=75.59 E-value=1.1 Score=41.58 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHhCCCC-cCceeEEEcCCCcccCCchhhhhc
Q psy9586 5 FTVKDIKKEVHKAKSQLY-PDRQAVRLEIKGKILKDSDDIKSL 46 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~-~~rQrL~~~~~Gk~L~d~ktL~~y 46 (233)
=||.+||.-++..+++-| ...|||+| .||.|.|...|+|.
T Consensus 32 wtv~~Lk~hls~VyPskpl~~dqrliY--sgkllld~qcl~d~ 72 (391)
T KOG4583|consen 32 WTVGDLKVHLSQVYPSKPLELDQRLIY--SGKLLLDHQCLTDW 72 (391)
T ss_pred hhHHHHhhhHhhcCCCCCchhhHHHHh--hccccccchhHHHH
Confidence 489999999988877655 46799999 89999887666554
No 92
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=74.80 E-value=4.2 Score=30.25 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=36.5
Q ss_pred CcccHHHHHHHHHHHhCCCCc-C---ceeEEEcCCCc--ccCCchhhhhcCCCCCceEEEecCCCccchh
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYP-D---RQAVRLEIKGK--ILKDSDDIKSLGLKNGDMVFIKDLGPQIGWS 66 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~-~---rQrL~~~~~Gk--~L~d~ktL~~ygv~~~~tl~vkdlg~qi~w~ 66 (233)
..+|+.++-+++-++.-|... + ..+++++++-. .-..+++|+++|+++|+.+.+.|.--.+.|+
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q~~~~~ 76 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQDFNLE 76 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETTTTEEEE
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcCCCcEEE
Confidence 357889988887654223322 1 34566643221 2223579999999999999999987766654
No 93
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=74.68 E-value=2.7 Score=31.20 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=39.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc------CCCcccCC------chhhhhcCCCCCceEEEecCCCc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE------IKGKILKD------SDDIKSLGLKNGDMVFIKDLGPQ 62 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~------~~Gk~L~d------~ktL~~ygv~~~~tl~vkdlg~q 62 (233)
|+++.|++|+-+.+.++ +.+...+=.|+.. ..-++|+. +++|.|+ +++|..|.|.|-.-.
T Consensus 3 v~~~~TL~~lid~L~~~-~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~lp 74 (84)
T PF08825_consen 3 VSPSWTLQDLIDSLCEK-PEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDPTLP 74 (84)
T ss_dssp ESTTSBSHHHHHHHHHS-TTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEETTES
T ss_pred cCccchHHHHHHHHHhC-hhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECCCCc
Confidence 47889999999999887 5554444444421 11223422 4689999 999999999886543
No 94
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=74.53 E-value=13 Score=27.41 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.+.+||+++..++ -+++.+--+|.+.++|+.++|++=.+. +.+++.+.+.--|
T Consensus 21 ~sL~EL~~K~~~~-l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L~~g 73 (78)
T cd06539 21 SSLQELISKTLDA-LVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVLEKG 73 (78)
T ss_pred cCHHHHHHHHHHH-hCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEECCC
Confidence 5789999999888 567777778889999999998875544 3455556554444
No 95
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=74.49 E-value=2.1 Score=30.50 Aligned_cols=36 Identities=19% Similarity=0.507 Sum_probs=28.6
Q ss_pred CCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 20 QLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 20 ~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+-|++.=-|. |.+|..|+-++.++|||+.+|.++++
T Consensus 33 gQP~ENWElk-De~G~vlD~~kKveD~GftngvkLFL 68 (76)
T PF10790_consen 33 GQPPENWELK-DESGQVLDVNKKVEDFGFTNGVKLFL 68 (76)
T ss_pred CCCcccceee-ccCCcEeeccchhhhccccccceEEE
Confidence 4455555554 56899999999999999999999875
No 96
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=74.11 E-value=9.1 Score=28.80 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEE--cCCC-cccCC-chhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRL--EIKG-KILKD-SDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~--~~~G-k~L~d-~ktL~~ygv~~~~tl~v 56 (233)
+.++||..++..+.+.+ .+ .+.-||.- ..++ ..|.+ +.|++|.|+.+|-+|.+
T Consensus 21 Sk~DTI~~v~~~~rklf-~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 21 SKTDTIGFVEKEMRKLF-NI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp -TTSBHHHHHHHHHHHC-T--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred cccChHHHHHHHHHHHh-CC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 46789999999999984 57 55678864 2333 35655 46999999999988765
No 97
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=72.84 E-value=1.1 Score=40.90 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHH----------HhCCCCcCcee-----EEEcCCCcccCCchhhhhcCCC
Q psy9586 4 SFTVKDIKKEVHK----------AKSQLYPDRQA-----VRLEIKGKILKDSDDIKSLGLK 49 (233)
Q Consensus 4 ~~TV~~LK~~i~~----------~~~~i~~~rQr-----L~~~~~Gk~L~d~ktL~~ygv~ 49 (233)
+++|.|+|++++. + +++|.+..+ |.+ +.|.+.|++||.|..-.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~-~~vp~dKik~~~~~lL~--~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDE-TRVPLDKIKNFRCRLLY--KKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp -------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhccccccccc-ccCCHHHhhhhhhhhee--cCccCCCcCcHHHHHhc
Confidence 6899999999999 5 677766555 888 78888899999887655
No 98
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=67.76 E-value=11 Score=27.77 Aligned_cols=30 Identities=7% Similarity=0.196 Sum_probs=26.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE 31 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~ 31 (233)
|+++.+..+|.++|.++ -++++++..|.|.
T Consensus 17 vp~~~~y~~L~~ki~~k-Lkl~~e~i~LsYk 46 (80)
T cd06406 17 VARGLSYATLLQKISSK-LELPAEHITLSYK 46 (80)
T ss_pred cCCCCCHHHHHHHHHHH-hCCCchhcEEEec
Confidence 46788899999999999 7899999999985
No 99
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=67.54 E-value=7.8 Score=29.47 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=42.3
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVF 55 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~ 55 (233)
.++|...|-++++++ .|-..+.-|+.+ +|+.++-++|=.|++.+++..|.
T Consensus 43 ktT~f~klm~af~~r-qGK~m~slRfL~--dG~rI~~dqTP~dldmEdnd~iE 92 (103)
T COG5227 43 KTTTFKKLMDAFSRR-QGKNMSSLRFLF--DGKRIDLDQTPGDLDMEDNDEIE 92 (103)
T ss_pred ccchHHHHHHHHHHH-hCcCcceeEEEE--cceecCCCCChhhcCCccchHHH
Confidence 456777787888888 788889999999 89999999999999999988763
No 100
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=67.51 E-value=20 Score=26.36 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.+.+||+++-.++ -+++.+--+|.+..+|..++|++=.+. +.+++.+.+-.-|
T Consensus 21 ~sL~eL~~K~~~~-l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~L~~g 73 (78)
T PF02017_consen 21 SSLEELLEKACDK-LQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLMLLEKG 73 (78)
T ss_dssp SSHHHHHHHHHHH-HT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEEEESS
T ss_pred CCHHHHHHHHHHH-hCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEEECCC
Confidence 5789999999888 478877888999899999998875543 3455555554433
No 101
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=67.49 E-value=5.3 Score=39.40 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHH-hCCCCcCce------eEEE--cCCCc-ccCCc-------------hhhhhcCCCCCceEEEe
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYPDRQ------AVRL--EIKGK-ILKDS-------------DDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~~rQ------rL~~--~~~Gk-~L~d~-------------ktL~~ygv~~~~tl~vk 57 (233)
-+||.++|++|-+. +.+.|-+++ -|-. ...|+ .|.|+ .||++|||.||+++-+.
T Consensus 211 CDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~vaLv 287 (539)
T PF08337_consen 211 CDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDGATVALV 287 (539)
T ss_dssp TSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TTEEEEEE
T ss_pred cCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCCceEEEe
Confidence 47999999998875 344433221 2211 12233 44432 28999999999998763
No 102
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=66.55 E-value=25 Score=25.57 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
.+.+||+++..++ -+++.+--+|.++++|..++|++=.+. +.+++.+.+-
T Consensus 19 ~sL~eL~~K~~~~-l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~L 68 (74)
T smart00266 19 SSLEELLSKVCDK-LALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMAL 68 (74)
T ss_pred CCHHHHHHHHHHH-hCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEEE
Confidence 5789999999988 467766778888889999998875544 2444444443
No 103
>COG5417 Uncharacterized small protein [Function unknown]
Probab=65.41 E-value=12 Score=27.47 Aligned_cols=29 Identities=21% Similarity=0.474 Sum_probs=23.6
Q ss_pred EEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 28 VRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 28 L~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+....+++.|.++..|.+||+.+|+-+.+
T Consensus 52 Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 52 IKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEeccceEecCCceEEeccccCCCEEEe
Confidence 44445889999999999999999997754
No 104
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=64.10 E-value=31 Score=25.35 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
.+.+||+.+..++ -+++..--+|.+.++|..++|++=.+. +.+++.+.+..
T Consensus 21 ~sL~eL~~K~~~~-l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~l~ 71 (78)
T cd01615 21 SSLEELLSKACEK-LKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLMLLE 71 (78)
T ss_pred CCHHHHHHHHHHH-cCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEEEC
Confidence 5789999999888 467766667888889999998875443 23444454433
No 105
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=63.28 E-value=29 Score=25.25 Aligned_cols=54 Identities=11% Similarity=0.034 Sum_probs=39.3
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC---CchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~---d~ktL~~ygv~~~~tl~vk 57 (233)
..++|+++|.+-+..+ |.+++.-+|.-.==.|.+. .+.||+|.|+....+|.|.
T Consensus 22 ~~t~~L~~l~~fv~~~--~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 22 LGDTPLQVLLNFVASK--GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 4678999999999764 6677777775321245553 3569999999999998875
No 106
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=61.39 E-value=24 Score=24.23 Aligned_cols=47 Identities=32% Similarity=0.438 Sum_probs=31.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+...||.||.+++ ++++++..+.. +|+.++.+ ..++.-+++|++|.+
T Consensus 12 ~~~~tv~~ll~~l-----~~~~~~i~V~v--Ng~~v~~~-~~~~~~L~~gD~V~i 58 (65)
T cd00565 12 EEGATLAELLEEL-----GLDPRGVAVAL--NGEIVPRS-EWASTPLQDGDRIEI 58 (65)
T ss_pred CCCCCHHHHHHHc-----CCCCCcEEEEE--CCEEcCHH-HcCceecCCCCEEEE
Confidence 4567888887664 46666666666 88877543 234456788888765
No 107
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=59.15 E-value=34 Score=23.96 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCC-cCceeEEE--cCCC--cccCCchhhhhcCCC--CCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLY-PDRQAVRL--EIKG--KILKDSDDIKSLGLK--NGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~-~~rQrL~~--~~~G--k~L~d~ktL~~ygv~--~~~tl~v 56 (233)
|++++|++||=++|.++ -++. .+--.|.+ +.+| ..|+.+++|.+...+ ...++++
T Consensus 13 v~~~~t~~~l~~~v~~~-l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~f 74 (80)
T PF09379_consen 13 VDPKTTGQDLLEQVCDK-LGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYF 74 (80)
T ss_dssp EETTSBHHHHHHHHHHH-HTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEE
T ss_pred EcCCCcHHHHHHHHHHH-cCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEE
Confidence 46789999999999998 5664 33347777 3344 467888899888776 3334554
No 108
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=58.69 E-value=42 Score=24.89 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
.+.+||+.+-.++ -+++ ..-+|.++++|..++|++=.+. +.+++.+.+..-|-
T Consensus 21 ~sL~EL~~K~~~~-L~~~-~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~L~~gq 73 (81)
T cd06537 21 ASLQELLAKALET-LLLS-GVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMVLEQGQ 73 (81)
T ss_pred cCHHHHHHHHHHH-hCCC-CceEEEEecCCCEEccHHHHhh--CCCCCEEEEECCCC
Confidence 4788888888877 4675 3478888999999998875544 35556666655444
No 109
>KOG2982|consensus
Probab=57.45 E-value=10 Score=35.25 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEE-cCCCccc-----CCchhhhhcCCCCCceEEEe
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRL-EIKGKIL-----KDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~-~~~Gk~L-----~d~ktL~~ygv~~~~tl~vk 57 (233)
-+-||.|+|..+..+ -|..++|.||.+ +.+||.- +.++.|..|++++|+++.+.
T Consensus 356 ~~~TV~D~~~~Ld~~-VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 356 MTRTVLDFMKILDPK-VGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eehHHHHHHHHhccc-cccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 356999999999998 799999999986 4456543 33567889999999987653
No 110
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=56.33 E-value=33 Score=28.13 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCce--eEEEcCC-C---cccCCchhhhhcCCC-CCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQ--AVRLEIK-G---KILKDSDDIKSLGLK-NGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQ--rL~~~~~-G---k~L~d~ktL~~ygv~-~~~tl~v 56 (233)
+++++|++|+-+.+.++ -|+ ++.+ .|.+.++ + ..|+.++++.+...+ ....+++
T Consensus 20 ~~~~~t~~ev~~~v~~~-~~l-~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~f 80 (207)
T smart00295 20 VDSSTTAEELLETVCRK-LGI-RESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYF 80 (207)
T ss_pred ECCCCCHHHHHHHHHHH-hCC-CccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEE
Confidence 46789999999999999 688 4455 3433222 2 356666777776655 2334444
No 111
>PRK06437 hypothetical protein; Provisional
Probab=55.46 E-value=36 Score=23.81 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+.+.||.||=++ -+++++...+.. +|+.++ .+.-+++|++|.+.
T Consensus 18 ~~~~tv~dLL~~-----Lgi~~~~vaV~v--Ng~iv~-----~~~~L~dgD~Veiv 61 (67)
T PRK06437 18 DHELTVNDIIKD-----LGLDEEEYVVIV--NGSPVL-----EDHNVKKEDDVLIL 61 (67)
T ss_pred CCCCcHHHHHHH-----cCCCCccEEEEE--CCEECC-----CceEcCCCCEEEEE
Confidence 455677776544 367766665555 898887 44456788887653
No 112
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=54.50 E-value=14 Score=26.92 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=13.9
Q ss_pred CcccHHHHHHHHHHHhCCC
Q psy9586 3 GSFTVKDIKKEVHKAKSQL 21 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i 21 (233)
...+|.|||.+|.++ .++
T Consensus 19 ~~Isv~dLKr~I~~~-~~l 36 (74)
T PF08783_consen 19 TSISVFDLKREIIEK-KKL 36 (74)
T ss_dssp SEEEHHHHHHHHHHH-HT-
T ss_pred CeeEHHHHHHHHHHH-hCC
Confidence 457999999999887 455
No 113
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=52.90 E-value=11 Score=28.28 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl 54 (233)
+.++..||+.++.+ -+++-+.=.+.+ ...+|+++++|-|-|++-+.++
T Consensus 12 ~epl~~Lk~lLe~R-l~~~L~~~~f~L--QD~~L~~~k~L~dQcVqgeGlV 59 (88)
T PF11620_consen 12 REPLSTLKKLLERR-LGISLSDYEFWL--QDIQLEPHKSLVDQCVQGEGLV 59 (88)
T ss_dssp SSBGGGHHHHSHHH-H-S--SS-EEEE--TTEE--TTSBTTTSS----SEE
T ss_pred CCcHHHHHHHHHHh-hCCCcCCCeEEe--ccceecCCccHHHhhccccCEE
Confidence 45778899999988 677777767777 5666999999999999776654
No 114
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=52.79 E-value=57 Score=24.04 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.+.+||+.+..++ -+++ ..-+|.+.++|..++|++=.+.+ .+++.+.+-.-|
T Consensus 21 ~sL~eL~~K~~~~-l~l~-~~~~lvL~eDGT~Vd~EeyF~tL--p~nt~l~vL~~g 72 (79)
T cd06538 21 DSLEDLLNKVLDA-LLLD-CISSLVLDEDGTGVDTEEFFQAL--ADNTVFMVLGKG 72 (79)
T ss_pred CCHHHHHHHHHHH-cCCC-CccEEEEecCCcEEccHHHHhhC--CCCcEEEEECCC
Confidence 5789999999888 4674 35778888899999988755442 444555544333
No 115
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=52.50 E-value=40 Score=23.05 Aligned_cols=47 Identities=30% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+.+.||.||.+++ +++++...+.. +|+.+..+ ..++.-+++|++|.+
T Consensus 11 ~~~~tv~~ll~~l-----~~~~~~v~v~v--N~~iv~~~-~~~~~~L~~gD~vei 57 (64)
T TIGR01683 11 EDGLTLAALLESL-----GLDPRRVAVAV--NGEIVPRS-EWDDTILKEGDRIEI 57 (64)
T ss_pred CCCCcHHHHHHHc-----CCCCCeEEEEE--CCEEcCHH-HcCceecCCCCEEEE
Confidence 4566888887653 46665555556 78777432 244456788888764
No 116
>KOG4147|consensus
Probab=51.42 E-value=21 Score=28.02 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.4
Q ss_pred ccC-CchhhhhcCCCCCceEEE
Q psy9586 36 ILK-DSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 36 ~L~-d~ktL~~ygv~~~~tl~v 56 (233)
.|+ ++++|..+|+.++++|.+
T Consensus 89 ~L~d~~ktL~~~GIenETEis~ 110 (127)
T KOG4147|consen 89 LLKDEDKTLKAAGIENETEISF 110 (127)
T ss_pred eecCccchHHHhccCcchhhhh
Confidence 345 467999999999998754
No 117
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=50.12 E-value=29 Score=25.93 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=30.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCC--cccCCch
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG--KILKDSD 41 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G--k~L~d~k 41 (233)
|.|++|++||=+++++|++=-.|+.=+|.+-.+| .+|.|+.
T Consensus 20 V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 20 VRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred cCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 5789999999999999965444777788764455 4677664
No 118
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=48.78 E-value=58 Score=23.33 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHHhCCCCc--CceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYP--DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~--~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.+||.+|++.+.++++++.. .+..+...-+++... .+.-+++|++|-+
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai 74 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAF 74 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEE
Confidence 47999999999998655311 111122211443222 2335788888754
No 119
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=44.96 E-value=88 Score=23.10 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHHhCCCCcC--ceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPD--RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~--rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.+.+||+++-.++ -+++.+ .-+|.+.++|..++|++=.+. +.+++.+.+.--|
T Consensus 21 ~sL~eL~~K~~~~-l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~~L~~g 75 (80)
T cd06536 21 SSLEELRIKACES-LGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFVLLAEN 75 (80)
T ss_pred CCHHHHHHHHHHH-hCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEEEECCC
Confidence 5789999998888 467633 367888889999998875544 2444555554433
No 120
>KOG4572|consensus
Probab=44.72 E-value=31 Score=36.03 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=39.6
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCC--CCCceEEEec
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGL--KNGDMVFIKD 58 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv--~~~~tl~vkd 58 (233)
.+.|+++||.+|+++ -|+....|.+ ++.+|...+.++.|.+|.- ++.+.|++-+
T Consensus 14 etqT~adLk~aiqke-~~~aIq~~tf-l~egGecmaadkrl~e~StaGTdTnPiffFn 69 (1424)
T KOG4572|consen 14 ETQTFADLKDAIQKE-VGHAIQDLTF-LDEGGECMAADKRLAEISTAGTDTNPIFFFN 69 (1424)
T ss_pred eeehHHHHHHHHHHH-hchhhceeee-eecCCcCcccccchhhhccccCCCCceEEee
Confidence 356999999999999 4665555544 3568899998888888872 4555677753
No 121
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=44.03 E-value=33 Score=26.44 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=28.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIK 44 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~ 44 (233)
|+.+.||.++...|.++ -+++++ |.|.+-.++.....+.+++
T Consensus 39 vp~~~tv~qf~~~ir~r-l~l~~~-~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 39 VPKDLTVGQFVYIIRKR-LQLSPE-QALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp EETTSBHHHHHHHHHHH-TT--TT-S-EEEEBTTBESSTTSBHH
T ss_pred EcCCCchhhHHHHhhhh-hcCCCC-ceEEEEEcCcccchhhHHH
Confidence 46789999999999998 567765 6665544665556666664
No 122
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=42.77 E-value=73 Score=23.33 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=31.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCc-CceeEEE-cCCCcc--cCCchhhhh----cCCCCCceE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYP-DRQAVRL-EIKGKI--LKDSDDIKS----LGLKNGDMV 54 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~-~rQrL~~-~~~Gk~--L~d~ktL~~----ygv~~~~tl 54 (233)
++++.+.++|+++|++++ ++.. +.-.|.| |++|.. |..+.-|++ +......|+
T Consensus 16 l~~~~~~~~L~~~i~~r~-~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v 76 (82)
T cd06407 16 LPPSWGFTELKQEIAKRF-KLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTI 76 (82)
T ss_pred cCCCCCHHHHHHHHHHHh-CCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeE
Confidence 467889999999999994 5543 3445555 344543 333333444 444444444
No 123
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=41.64 E-value=57 Score=24.01 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=25.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE 31 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~ 31 (233)
+++..+..+|.++|+++ -+.++++-.|.|.
T Consensus 13 v~~g~~y~~L~~~ls~k-L~l~~~~~~LSY~ 42 (78)
T cd06411 13 APRGADVSSLRALLSQA-LPQQAQRGQLSYR 42 (78)
T ss_pred ccCCCCHHHHHHHHHHH-hcCChhhcEEEec
Confidence 35677899999999999 6789999999985
No 124
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=41.34 E-value=74 Score=21.94 Aligned_cols=41 Identities=32% Similarity=0.466 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+.+.|..+||+++.. +.--+++ +|=+.+++..| ++|++|++
T Consensus 13 ~~~~tl~~lr~~~k~-------~~DI~I~--NGF~~~~d~~L-----~e~D~v~~ 53 (57)
T PF14453_consen 13 EENTTLFELRKESKP-------DADIVIL--NGFPTKEDIEL-----KEGDEVFL 53 (57)
T ss_pred CCCcCHHHHHHhhCC-------CCCEEEE--cCcccCCcccc-----CCCCEEEE
Confidence 456789999987633 2335678 89888776554 66777765
No 125
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=41.16 E-value=45 Score=24.99 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCC------cccCCchh---h--hhcCCCCCceEEEe
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG------KILKDSDD---I--KSLGLKNGDMVFIK 57 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G------k~L~d~kt---L--~~ygv~~~~tl~vk 57 (233)
..+||.||=+.+.+++ ++.+.++..+ +| -+|-|++. + .++.+++|++|.+-
T Consensus 27 ~~~tV~dll~~L~~~~---~~~~~~lf~~-~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 27 KPVTVGDLLDYVASNL---LEERPDLFIE-GGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred CCCcHHHHHHHHHHhC---chhhhhhEec-CCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 4579999999988773 5567777653 23 23444433 3 36779999998763
No 126
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=40.01 E-value=52 Score=28.27 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcC---ceeEEEcCCCc---ccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPD---RQAVRLEIKGK---ILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~---rQrL~~~~~Gk---~L~d~ktL~~ygv~~~~tl~v 56 (233)
|+.+.||.||.++++++ -+++.+ +.|+.-..++| .++++..+.+. .+..++++
T Consensus 40 vpk~~tV~Dll~~l~~k-~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~ 98 (213)
T PF14533_consen 40 VPKTGTVSDLLEELQKK-VGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRI 98 (213)
T ss_dssp -BTT-BHHHHHHHHHTT-----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEE
T ss_pred ECCCCCHHHHHHHHHHH-cCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeee
Confidence 46789999999999998 566654 34443222454 45666677666 33334444
No 127
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=39.04 E-value=55 Score=26.04 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=29.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIK 44 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~ 44 (233)
|+.+.||.++...|.++ -++++++ +.+-.++..+..+.++.
T Consensus 47 VP~d~tV~qF~~iIRkr-l~l~~~k--~flfVnn~lp~~s~~mg 87 (121)
T PTZ00380 47 LPRDATVAELEAAVRQA-LGTSAKK--VTLAIEGSTPAVTATVG 87 (121)
T ss_pred cCCCCcHHHHHHHHHHH-cCCChhH--EEEEECCccCCccchHH
Confidence 67899999999999988 7888887 33222555555555553
No 128
>KOG2013|consensus
Probab=37.84 E-value=43 Score=32.96 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHHhCCCCcCc----eeEEEcCCCcccC--CchhhhhcCCCCCceEEEecCCCccchh
Q psy9586 4 SFTVKDIKKEVHKAKSQLYPDR----QAVRLEIKGKILK--DSDDIKSLGLKNGDMVFIKDLGPQIGWS 66 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~~r----QrL~~~~~Gk~L~--d~ktL~~ygv~~~~tl~vkdlg~qi~w~ 66 (233)
..|+.+|-.+|-+...+..|+- |+|+++. .-+ .+|+|+|+|+.+|+-+.++|.+.-..-+
T Consensus 453 ~~~~~~L~D~ivk~r~~~~pdvsll~~~Li~~~---d~e~n~~k~lsel~i~ngsli~~~~e~~d~~~~ 518 (603)
T KOG2013|consen 453 KSTLRDLVDKIVKTRLGYLPDVSLLDDDLIDDM---DFEDNLDKTLSELGILNGSLINVKDEILDPVLE 518 (603)
T ss_pred cchHHHHHHHHHHHHhccCcccchhhhhhcccc---cchhhhhhhHHhhCCCCCceEeeecccCCccee
Confidence 4688888888777545666644 3444422 222 3579999999999999999977655544
No 129
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=37.46 E-value=1.1e+02 Score=20.94 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=29.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++.|+.||-++ .++++....+.+ +|+.+..++ .++. +++|+.|.+
T Consensus 13 ~~~~tl~~ll~~-----l~~~~~~vav~~--N~~iv~r~~-~~~~-L~~gD~ieI 58 (65)
T PRK05863 13 DEQTTVAALLDS-----LGFPEKGIAVAV--DWSVLPRSD-WATK-LRDGARLEV 58 (65)
T ss_pred CCCCcHHHHHHH-----cCCCCCcEEEEE--CCcCcChhH-hhhh-cCCCCEEEE
Confidence 345677666443 367777777777 787775443 3344 899998865
No 130
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=37.16 E-value=84 Score=21.39 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
..|+++|.+.+ +++++....-. +++.+. ....++.-+++|++|.+
T Consensus 14 ~~tl~~Ll~~l-----~~~~~~vavav--N~~iv~-~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 14 ATTLALLLAEL-----DYEGNWLATAV--NGELVH-KEARAQFVLHEGDRIEI 58 (65)
T ss_pred cCcHHHHHHHc-----CCCCCeEEEEE--CCEEcC-HHHcCccccCCCCEEEE
Confidence 35788877654 45554444444 787776 23456677888988865
No 131
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=36.58 E-value=1.2e+02 Score=21.11 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=26.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++++||+||-+++ +++++.-.+.. +|+.+.+ +.-+++|++|.+
T Consensus 21 ~~~~tv~~ll~~l-----~~~~~~v~v~v--Ng~iv~~-----~~~l~~gD~Vei 63 (70)
T PRK08364 21 RKGMKVADILRAV-----GFNTESAIAKV--NGKVALE-----DDPVKDGDYVEV 63 (70)
T ss_pred CCCCcHHHHHHHc-----CCCCccEEEEE--CCEECCC-----CcCcCCCCEEEE
Confidence 4567888887654 46554444444 7877743 444677777754
No 132
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=36.24 E-value=75 Score=22.27 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KG 34 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~G 34 (233)
++++.|-+||+++|++++ +.+.+..+|.|.+ +|
T Consensus 17 ~~~~~s~~dL~~~i~~~~-~~~~~~~~l~Y~Dedg 50 (81)
T smart00666 17 VPRDISFEDLRSKVAKRF-GLDNQSFTLKYQDEDG 50 (81)
T ss_pred ECCCCCHHHHHHHHHHHh-CCCCCCeEEEEECCCC
Confidence 356789999999999995 5655677888743 45
No 133
>KOG3146|consensus
Probab=35.08 E-value=3.1e+02 Score=24.08 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhhch---hhhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHH
Q psy9586 108 ALCYIVHYTKRVLETLTP---SVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFS 184 (233)
Q Consensus 108 ~~~~~~Hy~kR~~et~~p---~~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~ 184 (233)
.+..+.-.++|+++++.- .++.|..|...-.+|..=|+.+-..-.+-.+|++| .|...+.+=+-.|.++.
T Consensus 43 ~~f~S~~l~rrEl~a~~~~~G~v~Ne~in~viK~il~qpRP~~~~~~t~~s~yGMP-------SSHSQfM~Ffs~y~~l~ 115 (228)
T KOG3146|consen 43 AGFLSVFLFRRELAAIWFVIGQVSNEFINVVIKNILKQPRPVSFPDTTLRSGYGMP-------SSHSQFMGFFSVYSSLS 115 (228)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccCCCCC-------chHHHHHHHHHHHHHHH
Confidence 333444558999998832 46666677776677777776432211223344444 25556666666666665
Q ss_pred Hhh
Q psy9586 185 LLT 187 (233)
Q Consensus 185 l~~ 187 (233)
++.
T Consensus 116 ~y~ 118 (228)
T KOG3146|consen 116 VYK 118 (228)
T ss_pred HHH
Confidence 554
No 134
>PF15207 TMEM240: TMEM240 family
Probab=35.08 E-value=2e+02 Score=23.73 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCC----------cccccccCCCCCCCCcccee-cccchhh-------HHHHHHHHHHhhcchhHHHHH
Q psy9586 135 SIHLALRDLRPPGT----------NVRRIPVATSNPFTSLFDYV-SCPNYTY-------EFGSWLSFSLLTSCFPALLFA 196 (233)
Q Consensus 135 ~~h~~L~~LR~~~~----------~~~~ip~~~~~P~gglF~~V-scPnY~~-------Eil~w~~f~l~~~~~~~~~f~ 196 (233)
.++.+|-++|-+.. -.|+||+ .|-=+.| ++-|||. |+=.-+|..+ .-+..+++..
T Consensus 34 fHn~ilp~~rG~~Rvchc~cgrhhvhyvipy------dgd~s~vd~senyfv~d~vtkqeidlmlglll-gfcisw~l~w 106 (180)
T PF15207_consen 34 FHNYILPHMRGEDRVCHCNCGRHHVHYVIPY------DGDQSVVDSSENYFVTDNVTKQEIDLMLGLLL-GFCISWFLVW 106 (180)
T ss_pred HhhhccccccccceeEecCCCcceeEEEeee------cCCcchhccCCCccccCcchHHHHHHHHHHHH-HHHHHHHHHH
Confidence 36678888886521 2456666 4444444 6778875 5555455432 2355555555
Q ss_pred HHHHHHHHHHHHHHhHHHHhhC
Q psy9586 197 SAGMYQMTVWALGKHKNYKKEF 218 (233)
Q Consensus 197 ~~~~~~m~~~A~~~h~wY~~~F 218 (233)
.=++.-.+.||..+-|.|..-+
T Consensus 107 mdg~lhcavr~wr~sr~yd~vw 128 (180)
T PF15207_consen 107 MDGVLHCAVRAWRASRRYDNVW 128 (180)
T ss_pred HhhHHHHHHHHHHhhcccCCCc
Confidence 5567777888888877776533
No 135
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=34.19 E-value=71 Score=24.87 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhh----hhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDI----KSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL----~~ygv~~~~tl~v 56 (233)
|+.+.||.++...|.++ -++.++ +.|.+-.++.....+.++ +.++-.|| -||+
T Consensus 47 Vp~~~tv~~f~~~irk~-l~l~~~-~slfl~Vn~~~p~~~~~~~~lY~~~kd~DG-fLyl 103 (112)
T cd01611 47 VPSDLTVGQFVYIIRKR-IQLRPE-KALFLFVNNSLPPTSATMSQLYEEHKDEDG-FLYM 103 (112)
T ss_pred ecCCCCHHHHHHHHHHH-hCCCcc-ceEEEEECCccCCchhHHHHHHHHhCCCCC-EEEE
Confidence 57899999999999887 567665 444433355444555554 34554443 4444
No 136
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=33.07 E-value=1.2e+02 Score=20.50 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++..||.|+-++ .++++++-.+.. +|+.+..+ .-.+.-+++|+.|.+
T Consensus 13 ~~~~tl~~lL~~-----l~~~~~~vav~v--Ng~iv~r~-~~~~~~l~~gD~vei 59 (66)
T PRK05659 13 PDGESVAALLAR-----EGLAGRRVAVEV--NGEIVPRS-QHASTALREGDVVEI 59 (66)
T ss_pred CCCCCHHHHHHh-----cCCCCCeEEEEE--CCeEeCHH-HcCcccCCCCCEEEE
Confidence 345677776543 367776666666 78776533 234455788888765
No 137
>PRK07440 hypothetical protein; Provisional
Probab=32.61 E-value=1.1e+02 Score=21.47 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+...||.||-++ -++++....+-+ +|+.+..+ ..++.-+++|++|.+
T Consensus 17 ~~~~tl~~lL~~-----l~~~~~~vav~~--N~~iv~r~-~w~~~~L~~gD~IEI 63 (70)
T PRK07440 17 SSGTSLPDLLQQ-----LGFNPRLVAVEY--NGEILHRQ-FWEQTQVQPGDRLEI 63 (70)
T ss_pred CCCCCHHHHHHH-----cCCCCCeEEEEE--CCEEeCHH-HcCceecCCCCEEEE
Confidence 355677776543 356665555555 78777532 355666888888765
No 138
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=32.47 E-value=77 Score=23.36 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=22.1
Q ss_pred HHHHhCCCCcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 14 VHKAKSQLYPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 14 i~~~~~~i~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
|=+++ .++|+.--|.-| -++..|+=+++|.|+||+ ++|.+|-.
T Consensus 3 IC~KC-Efdp~htvLLrD~~s~e~LdLsKSLndlGir---ELYA~D~~ 46 (79)
T PF09469_consen 3 ICEKC-EFDPEHTVLLRDYQSGEELDLSKSLNDLGIR---ELYAWDTS 46 (79)
T ss_dssp HHHHT-T--TTSEEEES-SS---B--TTS-HHHHT-S---EEEEEE--
T ss_pred ccccc-ccCcceEEEeecCCCCCcccccccHHHhhHH---HHHhhccc
Confidence 44553 466766655432 367889999999999997 78988875
No 139
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=32.19 E-value=1.6e+02 Score=24.83 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=38.3
Q ss_pred ccceecccchhhHHHHHHHHHHhhc-------------chhHHHHHHHHHHHHHHHHHHHhHHHHhhCCC
Q psy9586 164 LFDYVSCPNYTYEFGSWLSFSLLTS-------------CFPALLFASAGMYQMTVWALGKHKNYKKEFPD 220 (233)
Q Consensus 164 lF~~VscPnY~~Eil~w~~f~l~~~-------------~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~~ 220 (233)
.=+||-+=..++|+.+-+.+.++.. ++..++++++++.....-++.-++--.++|+|
T Consensus 67 vRD~VDsR~~i~e~fmP~alv~lv~~~v~~~~~~~~~~~~~~~~~~~~~iid~~~l~r~vkk~v~~kFp~ 136 (170)
T PF11241_consen 67 VRDYVDSRRNIGEFFMPVALVLLVLSFVVPSPQVQLYVTLAMYVLLLLVIIDGVILGRRVKKRVAEKFPD 136 (170)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3488999999999998887776543 12233344444555555566667788889987
No 140
>KOG4142|consensus
Probab=29.72 E-value=1e+02 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=33.2
Q ss_pred CCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHH
Q psy9586 162 TSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGM 200 (233)
Q Consensus 162 gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~ 200 (233)
|.-|+....|-|-+-.+.++|+|++-+...+++..+.++
T Consensus 140 gFPFNv~dNPMY~GSTl~fLg~Al~~gkpaGLllt~~V~ 178 (208)
T KOG4142|consen 140 GFPFNVLDNPMYWGSTLNFLGWALMHGKPAGLLLTVLVA 178 (208)
T ss_pred cccccccCCcccccchHHHHHHHHHcCCcchhHHHHHHH
Confidence 677999999999999999999999998877776655443
No 141
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=29.61 E-value=1.1e+02 Score=29.46 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=38.7
Q ss_pred CCcccHHHHHHHHHHH-hCCCCcCceeEEEcCCC--cc--cCCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKA-KSQLYPDRQAVRLEIKG--KI--LKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~-~~~i~~~rQrL~~~~~G--k~--L~d~ktL~~ygv~~~~tl~vk 57 (233)
.++++..-|-.++-.- -++.+|++..+.-.++| .+ +..+.|+.|+|++.|..+++.
T Consensus 17 qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ 77 (571)
T COG5100 17 QESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLE 77 (571)
T ss_pred cccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEE
Confidence 4566666665555442 24678888888766554 32 345679999999999999873
No 142
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=29.53 E-value=44 Score=26.52 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=27.0
Q ss_pred hhhhhcCCCCCceEEEecCC---CccchhhhhhHHhhh
Q psy9586 41 DDIKSLGLKNGDMVFIKDLG---PQIGWSTVFMAEYAG 75 (233)
Q Consensus 41 ktL~~ygv~~~~tl~vkdlg---~qi~w~~vf~~Ey~g 75 (233)
+.+++.|+.++++|.+-|-+ ..-+.|+.|+++++|
T Consensus 85 ~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G 122 (138)
T cd01445 85 AMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCG 122 (138)
T ss_pred HHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcC
Confidence 46788999999998887753 556677777888777
No 143
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=29.13 E-value=34 Score=30.15 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=37.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC--CC--cccCCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI--KG--KILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~--~G--k~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
|+.+++|.++-..|.+. -|+|++..=+.|.+ -+ ..++.+.++++..+++|+-|.+..
T Consensus 91 v~~~~~v~~l~~~i~~~-~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~ 151 (249)
T PF12436_consen 91 VPKNDKVSELVPLINER-AGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQR 151 (249)
T ss_dssp EETT-BGGGTHHHHHHH-HT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHH-cCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEe
Confidence 35678999999999998 79998877666642 23 346778899999999999998855
No 144
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=28.92 E-value=1.5e+02 Score=20.60 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.||.||-+. -++++.+-.+-. +|+.+..+ ..++.-+++|+.|.+
T Consensus 17 ~tv~~lL~~-----l~~~~~~vav~v--N~~iv~r~-~w~~~~L~~gD~iEI 60 (67)
T PRK07696 17 KTVAELLTH-----LELDNKIVVVER--NKDILQKD-DHTDTSVFDGDQIEI 60 (67)
T ss_pred ccHHHHHHH-----cCCCCCeEEEEE--CCEEeCHH-HcCceecCCCCEEEE
Confidence 467766543 367666666666 88877533 355666888888765
No 145
>PHA01627 DNA binding protein
Probab=28.82 E-value=48 Score=25.83 Aligned_cols=28 Identities=29% Similarity=0.652 Sum_probs=18.9
Q ss_pred CCCcCceeEEEc--------------CCCcccCCchhhhhcC
Q psy9586 20 QLYPDRQAVRLE--------------IKGKILKDSDDIKSLG 47 (233)
Q Consensus 20 ~i~~~rQrL~~~--------------~~Gk~L~d~ktL~~yg 47 (233)
.+|.+|+.+..+ +.|++|++++-++.+|
T Consensus 60 ~ip~NRi~i~~~~GDkalv~~L~~Rl~EG~Vl~~~e~l~~~~ 101 (107)
T PHA01627 60 NLPKNRIEIKLDKGDKALAIMLKQRLEEGKVLKTEEELEMIG 101 (107)
T ss_pred cccccceEEEecCCCEEEEEEecccCCCCeeccHHHHHHhCC
Confidence 588899988764 3566666655565555
No 146
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=27.76 E-value=23 Score=25.55 Aligned_cols=15 Identities=60% Similarity=0.953 Sum_probs=10.1
Q ss_pred hhcCCCCCceEEE-ec
Q psy9586 44 KSLGLKNGDMVFI-KD 58 (233)
Q Consensus 44 ~~ygv~~~~tl~v-kd 58 (233)
+.+.++||+|+|+ ||
T Consensus 8 ksi~LkDGstvyiFKD 23 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKD 23 (73)
T ss_dssp EEEEBTTSEEEEEETT
T ss_pred eeEecCCCCEEEEEcC
Confidence 4556788888874 44
No 147
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=27.52 E-value=1.1e+02 Score=21.86 Aligned_cols=38 Identities=26% Similarity=0.196 Sum_probs=28.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCC--cccCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG--KILKD 39 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G--k~L~d 39 (233)
|.|..|+.|+-+++-++ .|+.++.=.+.+..++ +.++.
T Consensus 16 vrpg~ti~d~L~~~c~k-r~l~~~~~~v~~~~~~~~~~~~~ 55 (72)
T cd01760 16 VRPGMSVRDVLAKACKK-RGLNPECCDVFLLGLDEKKPLDL 55 (72)
T ss_pred ECCCCCHHHHHHHHHHH-cCCCHHHEEEEEecCCCcCCcCc
Confidence 35788999998888888 7999988888774334 55543
No 148
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=27.46 E-value=2e+02 Score=19.63 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++.||.||-+.+ ++....-.+-. +++.+..+ ..++.-+++|++|.+
T Consensus 13 ~~~~tl~~ll~~l-----~~~~~~vaVav--N~~iv~r~-~w~~~~L~~gD~Iei 59 (66)
T PRK08053 13 AAGQTVHELLEQL-----NQLQPGAALAI--NQQIIPRE-QWAQHIVQDGDQILL 59 (66)
T ss_pred CCCCCHHHHHHHc-----CCCCCcEEEEE--CCEEeChH-HcCccccCCCCEEEE
Confidence 4556888887653 33333444445 78777522 244555788888765
No 149
>KOG0400|consensus
Probab=26.14 E-value=35 Score=27.73 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHH-hCCCCcCceeEEE
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYPDRQAVRL 30 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~~rQrL~~ 30 (233)
..|.+|+|++|-+- ..|++|+|...++
T Consensus 27 K~~~ddvkeqI~K~akKGltpsqIGviL 54 (151)
T KOG0400|consen 27 KLTADDVKEQIYKLAKKGLTPSQIGVIL 54 (151)
T ss_pred hcCHHHHHHHHHHHHHcCCChhHceeee
Confidence 35789999998873 3699999986665
No 150
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=26.13 E-value=1.4e+02 Score=24.89 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=39.3
Q ss_pred hhHhhhhHHHHHHHHhcCCC-CC-cccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc
Q psy9586 127 VFCQLGNLSIHLALRDLRPP-GT-NVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS 188 (233)
Q Consensus 127 ~~~~~~n~~~h~~L~~LR~~-~~-~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~ 188 (233)
.+|+..|+.+-..|---+.. |. =+..++.- .|.-|++.+.|.|-++++..+|.++...
T Consensus 74 aiGq~Lv~ss~~~LG~tGTYlGdyFGilm~~V----T~FPFnv~~nPmY~GStl~fLg~al~~p 133 (164)
T PLN02797 74 AFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWV----TEFPFGVIRDPQYVGSILSLLACLSWVP 133 (164)
T ss_pred HHhhHHHHHHHHHhCCceeeehhhhccccccc----ccCCCCCCCCcchhhHHHHHHHHHHHhh
Confidence 77788888877766544332 11 00011111 2677999999999999999999999863
No 151
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=25.66 E-value=1e+02 Score=23.69 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=27.1
Q ss_pred CCcCceeE-EEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 21 LYPDRQAV-RLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 21 i~~~rQrL-~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
+.|+++|- +|+.+|+.+-|+..|. .+..|...||.|
T Consensus 14 ~~Pt~~RARlyd~dG~Ll~DSr~l~-----~~~~v~~~~Lpp 50 (112)
T PF13756_consen 14 ISPTRTRARLYDPDGNLLADSRVLY-----SRGRVLRFDLPP 50 (112)
T ss_pred CCCCCceEEEECCCCCEEeeccccc-----cCCcccccCCCC
Confidence 45556664 5899999999999887 555677888874
No 152
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=24.84 E-value=2.4e+02 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=23.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCc-eeEEEcCCC--ccc
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDR-QAVRLEIKG--KIL 37 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~r-QrL~~~~~G--k~L 37 (233)
+.++||+||-.++.++ ..++++. =+|.+..+| |+|
T Consensus 20 ~l~tTv~eli~~L~rK-~~l~~~~ny~l~l~~~~l~RvL 57 (97)
T cd01775 20 PLNTTVSELIPQLAKK-FYLPSGGNYQLSLKKHDLSRVL 57 (97)
T ss_pred CCcCcHHHHHHHHHHh-hcCCCCCCeEEEEEECCeeeec
Confidence 5789999999999998 5666533 345443233 455
No 153
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=24.51 E-value=39 Score=23.89 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=13.2
Q ss_pred chhhhhcCCCCCceEEEec
Q psy9586 40 SDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 40 ~ktL~~ygv~~~~tl~vkd 58 (233)
++.|.+.|+++|+||.+-|
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp HHHHHTTT--TT-EEEETT
T ss_pred HHHHHHcCCCCCCEEEEcC
Confidence 4678999999999998755
No 154
>KOG0012|consensus
Probab=24.48 E-value=76 Score=29.93 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC--chhhhhcCCCCCceEEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD--SDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d--~ktL~~ygv~~~~tl~v 56 (233)
.+....+++..+... .+++.+..-+++ ++..+++ +..+.++|++++.++-+
T Consensus 21 ~dg~L~nl~aL~~~d-~g~~~~~~~li~--n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 21 TDGELNNLAALCWKD-TGIVYDPSDLIY--NPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred cccchhhHHHHHHHH-hCcccchhhccc--CCCccccchhhhhhhcccccceeEec
Confidence 344567889999888 899999999999 7777754 45789999999998876
No 155
>TIGR01439 lp_hng_hel_AbrB looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609.
Probab=24.45 E-value=1e+02 Score=18.73 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=20.9
Q ss_pred cCCCcccCCchhhhhcCCCCCceEEEe-cCCC
Q psy9586 31 EIKGKILKDSDDIKSLGLKNGDMVFIK-DLGP 61 (233)
Q Consensus 31 ~~~Gk~L~d~ktL~~ygv~~~~tl~vk-dlg~ 61 (233)
+++|+..=-.+-.+++|++.|+++.+. +-+.
T Consensus 4 ~~kgri~iP~~~r~~l~~~~gd~~~i~~~~~~ 35 (43)
T TIGR01439 4 DKKGQIVIPKEIREKLGLKEGDRLEVIRVEDG 35 (43)
T ss_pred CcCCeEEecHHHHHHcCcCCCCEEEEEEeCCC
Confidence 345555444556788999999998887 4344
No 156
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=1.8e+02 Score=23.29 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhc--------------chhHHHHHHHHHHHHHHHHHHHhHH
Q psy9586 177 FGSWLSFSLLTS--------------CFPALLFASAGMYQMTVWALGKHKN 213 (233)
Q Consensus 177 il~w~~f~l~~~--------------~~~~~~f~~~~~~~m~~~A~~~h~w 213 (233)
.+.|++++++.+ ...+.+|++++...+ .||...|-|
T Consensus 35 fl~wl~~~vllg~l~~~l~n~~~~~g~~~a~vftivaif~~-~ya~~lY~k 84 (126)
T COG5264 35 FLSWLSVTVLLGGLGFALYNSGDRLGMISAYVFTIVAIFCG-FYALMLYLK 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 467888777654 456777877776666 589888777
No 157
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.40 E-value=76 Score=19.23 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=13.5
Q ss_pred cccHHHHHHHHHHHhCCCCc
Q psy9586 4 SFTVKDIKKEVHKAKSQLYP 23 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~ 23 (233)
+.||.|||+...+. |++.
T Consensus 3 ~l~v~eLk~~l~~~--gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKER--GLST 20 (35)
T ss_dssp TSHHHHHHHHHHHT--TS-S
T ss_pred cCcHHHHHHHHHHC--CCCC
Confidence 57899999998875 6643
No 158
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=24.00 E-value=55 Score=23.15 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=16.2
Q ss_pred chhhhhcCCCCCceEEEec
Q psy9586 40 SDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 40 ~ktL~~ygv~~~~tl~vkd 58 (233)
++.|.+.|+++|+||.+-|
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIGD 64 (69)
T ss_pred HHHHHHcCCCCCCEEEEcc
Confidence 4679999999999998765
No 159
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=23.52 E-value=1.5e+02 Score=20.48 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=21.1
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEc
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLE 31 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~ 31 (233)
.+.|.++|+++|.+++ +.+...-++.|.
T Consensus 19 ~~~s~~~L~~~i~~~~-~~~~~~~~l~y~ 46 (81)
T cd05992 19 RSISFEDLRSKIAEKF-GLDAVSFKLKYP 46 (81)
T ss_pred CCCCHHHHHHHHHHHh-CCCCCcEEEEee
Confidence 6789999999999994 454445566663
No 160
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=23.28 E-value=2.3e+02 Score=20.84 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+++.||.||-+. -++++.+-.+-+ +|..+. .+..++.-+++|+.|.+.
T Consensus 31 ~~~~tl~~LL~~-----l~~~~~~vAVev--Ng~iVp-r~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 31 DISSSLAQIIAQ-----LSLPELGCVFAI--NNQVVP-RSEWQSTVLSSGDAISLF 78 (84)
T ss_pred CCCCcHHHHHHH-----cCCCCceEEEEE--CCEEeC-HHHcCcccCCCCCEEEEE
Confidence 455677776543 256655555555 888774 234666678888887653
No 161
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.99 E-value=1.4e+02 Score=22.17 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=24.0
Q ss_pred CCcccHHHHHHHHHHHhCCCCcC---ceeEEE-cCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPD---RQAVRL-EIKG 34 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~---rQrL~~-~~~G 34 (233)
.++..+.+|++.|+++ -|+... .-.|.| |++|
T Consensus 18 ~~s~~~~~L~~~I~~R-l~~d~~~~~~~~L~YlDDEg 53 (86)
T cd06409 18 RPSESLEELRTLISQR-LGDDDFETHLYALSYVDDEG 53 (86)
T ss_pred cCCCCHHHHHHHHHHH-hCCccccCCcccEEEEcCCC
Confidence 4678999999999999 678763 556666 3455
No 162
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=21.96 E-value=1.9e+02 Score=19.21 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhC--CCCCCC
Q psy9586 195 FASAGMYQMTVWALGKHKNYKKEF--PDYPKQ 224 (233)
Q Consensus 195 f~~~~~~~m~~~A~~~h~wY~~~F--~~yp~~ 224 (233)
++..++..|..-|.--|+-|+-.. ++++++
T Consensus 13 ~~~~s~~sM~aGA~vVH~~ykPdltiP~i~~~ 44 (47)
T PF14990_consen 13 SLVASLLSMLAGASVVHNIYKPDLTIPEIPPK 44 (47)
T ss_pred HHHHHHHHHHhhhHHHHHHhCccCCCCCCCCC
Confidence 334556778888999999999765 466653
No 163
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=21.88 E-value=1.4e+02 Score=20.92 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEc-CCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKG 34 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-~~G 34 (233)
+.+.|.++|+++|++++ +.+...-+|.|. ++|
T Consensus 19 ~~~~s~~~L~~~i~~~~-~~~~~~~~l~Y~D~dg 51 (84)
T PF00564_consen 19 PSDVSFDDLRSKIREKF-GLLDEDFQLKYKDEDG 51 (84)
T ss_dssp CSTSHHHHHHHHHHHHH-TTSTSSEEEEEEETTS
T ss_pred CCCCCHHHHHHHHHHHh-CCCCccEEEEeeCCCC
Confidence 45679999999999995 455677788874 456
No 164
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=21.62 E-value=2.4e+02 Score=21.46 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.4
Q ss_pred cceecccchhhHHHHHHHHHHhh
Q psy9586 165 FDYVSCPNYTYEFGSWLSFSLLT 187 (233)
Q Consensus 165 F~~VscPnY~~Eil~w~~f~l~~ 187 (233)
+++|..=|=..|+..-+.+.++.
T Consensus 24 ~~~vn~~h~~~e~~i~i~~ii~~ 46 (110)
T PF13789_consen 24 YKHVNKLHKKGEWIIFIIFIILI 46 (110)
T ss_pred CCchhHHHHHHHHHhhhhHHHHH
Confidence 38888888888888877666654
No 165
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=21.62 E-value=76 Score=19.67 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=11.5
Q ss_pred CcccHHHHHHHHHHH
Q psy9586 3 GSFTVKDIKKEVHKA 17 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~ 17 (233)
.+.||.+||+.+.+.
T Consensus 2 ~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 2 KSLTVAQLKRILDEH 16 (35)
T ss_dssp TT--SHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 567999999999887
No 166
>PF15584 Imm44: Immunity protein 44
Probab=21.34 E-value=59 Score=24.72 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=14.3
Q ss_pred cccCCCCCCCCccc---------eecccchhhH
Q psy9586 153 IPVATSNPFTSLFD---------YVSCPNYTYE 176 (233)
Q Consensus 153 ip~~~~~P~gglF~---------~VscPnY~~E 176 (233)
|-+|..||-.|.++ ++-|||||-.
T Consensus 19 I~SG~~iP~~GIwEPv~~~~~K~~~gc~NYf~~ 51 (94)
T PF15584_consen 19 IKSGQEIPCDGIWEPVDAPKPKLNVGCPNYFLG 51 (94)
T ss_pred EecCCCcccCCeEccccCCCCccccCcchhhcC
Confidence 33444455455554 4679999853
No 167
>KOG4580|consensus
Probab=20.86 E-value=2.4e+02 Score=22.05 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhc--------------chhHHHHHHHHHHHHHHHHHHHhHHH
Q psy9586 177 FGSWLSFSLLTS--------------CFPALLFASAGMYQMTVWALGKHKNY 214 (233)
Q Consensus 177 il~w~~f~l~~~--------------~~~~~~f~~~~~~~m~~~A~~~h~wY 214 (233)
.+.|++++++.+ ...+.+|++++...+ .+|...|-|=
T Consensus 20 Fl~WL~~tvlLg~l~~~l~n~~~~~g~~~a~v~t~vaif~~-~ya~~lYlwR 70 (112)
T KOG4580|consen 20 FLSWLSVTVLLGGLGFALYNSGDRLGILSAYVYTLVAIFCG-FYALFLYLWR 70 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 466777777654 456677777776666 5888888773
No 168
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=20.15 E-value=1.1e+02 Score=22.75 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=19.5
Q ss_pred CCcccHHH-HHHH-HHHHhCCCCcCceeE-EEcCCCcccCCchh
Q psy9586 2 SGSFTVKD-IKKE-VHKAKSQLYPDRQAV-RLEIKGKILKDSDD 42 (233)
Q Consensus 2 ~~~~TV~~-LK~~-i~~~~~~i~~~rQrL-~~~~~Gk~L~d~kt 42 (233)
++.+||.| +++- |.++++.++.+.+++ +| ||..+.+..
T Consensus 21 p~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIf---Gk~~~~d~~ 61 (84)
T PF03658_consen 21 PEGTTVAQAIEASGILEQFPEIDLEKNKVGIF---GKLVKLDTV 61 (84)
T ss_dssp ETT-BHHHHHHHHTHHHH-TT--TTTSEEEEE---E-S--TT-B
T ss_pred CCcCcHHHHHHHcCchhhCcccCcccceeeee---eeEcCCCCc
Confidence 46778887 3332 667778998888887 45 665554333
Done!