Query psy9586
Match_columns 233
No_of_seqs 216 out of 865
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:28:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dzj_A Synaptic glycoprotein S 99.7 4E-17 1.4E-21 121.4 4.9 59 1-59 30-88 (88)
2 1yx5_B Ubiquitin; proteasome, 99.6 4.2E-15 1.4E-19 111.6 7.0 65 1-68 17-84 (98)
3 3plu_A Ubiquitin-like modifier 99.5 4.1E-15 1.4E-19 111.7 5.0 53 1-56 38-90 (93)
4 1v6e_A Cytoskeleton-associated 99.5 7.5E-15 2.6E-19 110.1 5.8 63 1-64 25-92 (95)
5 4b6w_A Tubulin-specific chaper 99.5 6.8E-15 2.3E-19 108.9 5.0 60 1-61 21-85 (86)
6 1uh6_A Ubiquitin-like 5; beta- 99.5 1.4E-14 4.7E-19 110.3 4.5 54 1-57 45-98 (100)
7 1wju_A NEDD8 ultimate buster-1 99.5 2.8E-14 9.5E-19 108.6 6.1 56 1-59 36-91 (100)
8 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 7.6E-14 2.6E-18 101.9 6.8 61 1-64 24-86 (87)
9 3phx_B Ubiquitin-like protein 99.5 6.3E-14 2.1E-18 100.7 5.6 53 1-56 21-73 (79)
10 2bwf_A Ubiquitin-like protein 99.4 1E-13 3.4E-18 98.7 6.1 56 1-59 20-75 (77)
11 1t0y_A Tubulin folding cofacto 99.4 7.3E-14 2.5E-18 109.5 5.6 62 1-63 24-90 (122)
12 2kk8_A Uncharacterized protein 99.4 7.2E-14 2.5E-18 102.6 5.1 54 1-57 27-81 (84)
13 2lxa_A Ubiquitin-like protein 99.4 1.1E-13 3.7E-18 102.7 5.6 53 1-56 20-74 (87)
14 2faz_A Ubiquitin-like containi 99.4 1.2E-13 4.3E-18 98.8 5.2 54 1-57 21-74 (78)
15 4fbj_B NEDD8; effector-HOST ta 99.4 1.7E-13 5.8E-18 101.1 5.6 53 1-56 17-69 (88)
16 3m63_B Ubiquitin domain-contai 99.4 2E-13 6.9E-18 103.6 5.7 58 1-61 44-101 (101)
17 2wyq_A HHR23A, UV excision rep 99.4 3.3E-13 1.1E-17 97.9 6.6 59 1-61 22-82 (85)
18 1wgd_A Homocysteine-responsive 99.4 4.2E-13 1.4E-17 99.7 7.1 53 1-56 26-82 (93)
19 1ndd_A NEDD8, protein (ubiquit 99.4 3.1E-13 1.1E-17 95.4 6.1 53 1-56 17-69 (76)
20 2kj6_A Tubulin folding cofacto 99.4 1.9E-13 6.6E-18 103.3 5.3 60 1-61 33-97 (97)
21 1wy8_A NP95-like ring finger p 99.4 4.3E-13 1.5E-17 98.4 6.8 58 1-61 26-85 (89)
22 4ajy_B Transcription elongatio 99.4 1.4E-13 4.8E-18 107.5 4.4 53 1-56 18-77 (118)
23 2hj8_A Interferon-induced 17 k 99.4 1.8E-13 6.3E-18 100.8 4.6 55 1-58 21-75 (88)
24 2kan_A Uncharacterized protein 99.4 3E-13 1E-17 101.3 5.8 54 1-57 31-85 (94)
25 1v5t_A 8430435I17RIK protein; 99.4 4.2E-13 1.4E-17 99.5 6.5 54 1-57 24-80 (90)
26 2dzi_A Ubiquitin-like protein 99.4 3.7E-13 1.3E-17 96.6 5.9 54 1-57 24-77 (81)
27 3v6c_B Ubiquitin; structural g 99.4 2.7E-13 9.4E-18 100.3 5.3 54 1-57 34-87 (91)
28 1uel_A HHR23B, UV excision rep 99.4 7.9E-13 2.7E-17 98.8 7.9 58 1-60 17-76 (95)
29 2kjr_A CG11242; UBL, ubiquitin 99.4 2.3E-13 7.9E-18 102.4 5.0 57 1-58 34-94 (95)
30 3n3k_B Ubiquitin; hydrolase, p 99.4 3.6E-13 1.2E-17 97.5 5.5 58 1-61 20-79 (85)
31 2kd0_A LRR repeats and ubiquit 99.4 3.4E-13 1.2E-17 99.1 5.4 55 1-58 28-82 (85)
32 2l7r_A Ubiquitin-like protein 99.4 3.8E-13 1.3E-17 100.3 5.7 53 1-56 34-86 (93)
33 4dbg_A Ranbp-type and C3HC4-ty 99.4 3.9E-13 1.3E-17 103.1 5.9 58 1-61 43-101 (105)
34 3dbh_I NEDD8; cell cycle, acti 99.4 3.5E-13 1.2E-17 98.3 5.2 53 1-56 29-81 (88)
35 3u5e_m 60S ribosomal protein L 99.4 6.1E-14 2.1E-18 110.6 1.1 70 1-73 17-88 (128)
36 4a20_A Ubiquitin-like protein 99.4 3.8E-13 1.3E-17 101.9 5.4 54 1-57 38-93 (98)
37 1sif_A Ubiquitin; hydrophobic 99.4 5E-13 1.7E-17 98.5 5.7 58 1-61 26-85 (88)
38 3a9j_A Ubiquitin; protein comp 99.4 6.3E-13 2.1E-17 93.8 6.0 53 1-56 17-69 (76)
39 3m62_B UV excision repair prot 99.4 7.4E-13 2.5E-17 101.1 6.5 59 1-62 18-76 (106)
40 2fnj_B Transcription elongatio 99.4 3.3E-13 1.1E-17 105.5 4.5 53 1-56 18-77 (118)
41 2uyz_B Small ubiquitin-related 99.4 3.2E-13 1.1E-17 96.9 4.1 53 1-56 20-72 (79)
42 4eew_A Large proline-rich prot 99.4 4.4E-13 1.5E-17 98.2 4.8 53 1-57 34-86 (88)
43 2kdb_A Homocysteine-responsive 99.4 4.6E-13 1.6E-17 101.6 5.0 54 1-56 42-98 (99)
44 3mtn_B UBA80, ubcep1, ubiquiti 99.4 6.6E-13 2.3E-17 95.9 5.4 53 1-56 20-72 (85)
45 1v5o_A 1700011N24RIK protein; 99.4 6.3E-13 2.1E-17 100.7 5.4 56 1-59 28-84 (102)
46 4hcn_B Polyubiquitin, ubiquiti 99.3 7.9E-13 2.7E-17 99.3 5.6 53 1-56 39-91 (98)
47 2daf_A FLJ35834 protein; hypot 99.3 5.6E-13 1.9E-17 103.8 4.8 53 1-56 33-85 (118)
48 2klc_A Ubiquilin-1; ubiquitin- 99.3 9.3E-13 3.2E-17 99.8 5.8 56 1-59 41-96 (101)
49 3k9o_B Ubiquitin, UBB+1; E2-25 99.3 1.1E-12 3.9E-17 97.4 6.0 53 1-56 18-70 (96)
50 1yqb_A Ubiquilin 3; structural 99.3 7.4E-13 2.5E-17 100.2 4.7 54 1-57 38-91 (100)
51 4dwf_A HLA-B-associated transc 99.3 1.2E-12 4.2E-17 96.2 5.5 54 1-58 22-75 (90)
52 1wx8_A Riken cDNA 4931431F19; 99.3 6.9E-13 2.4E-17 98.9 4.0 54 1-57 33-86 (96)
53 1ttn_A DC-UBP, dendritic cell- 99.3 2.1E-12 7.1E-17 98.5 6.7 58 1-61 40-97 (106)
54 1we6_A Splicing factor, putati 99.3 2.2E-12 7.4E-17 99.1 6.2 60 1-63 47-109 (111)
55 3b1l_X E3 ubiquitin-protein li 99.0 1.8E-13 6.3E-18 97.3 0.0 53 1-56 17-69 (76)
56 2kdi_A Ubiquitin, vacuolar pro 99.3 2.3E-12 7.9E-17 99.7 5.7 58 1-61 26-85 (114)
57 1wgg_A Ubiquitin carboxyl-term 99.3 1.2E-12 4E-17 98.5 3.8 53 1-57 24-76 (96)
58 1x1m_A Ubiquitin-like protein 99.3 5.9E-12 2E-16 96.2 7.3 55 2-59 41-99 (107)
59 1we7_A SF3A1 protein; structur 99.3 3.3E-12 1.1E-16 98.7 5.7 59 1-62 52-112 (115)
60 1j8c_A Ubiquitin-like protein 99.3 3.1E-12 1.1E-16 100.7 5.6 54 1-57 48-101 (125)
61 1wyw_B Ubiquitin-like protein 99.3 2E-12 7E-17 97.0 4.3 53 1-56 38-90 (97)
62 1wxv_A BAG-family molecular ch 99.3 5.7E-12 1.9E-16 93.3 6.5 55 4-61 31-86 (92)
63 1wx7_A Ubiquilin 3; ubiquitin- 99.3 2.6E-12 8.9E-17 97.8 4.7 54 1-57 33-86 (106)
64 3vdz_A Ubiquitin-40S ribosomal 99.2 5.8E-12 2E-16 96.9 5.2 53 1-56 52-104 (111)
65 1v86_A DNA segment, CHR 7, way 99.2 3.2E-12 1.1E-16 95.8 3.4 55 1-59 33-87 (95)
66 3l0w_B Monoubiquitinated proli 99.2 9.3E-12 3.2E-16 102.7 6.4 58 1-61 17-76 (169)
67 1se9_A Ubiquitin family; ubiqu 99.2 6.6E-12 2.3E-16 99.2 5.2 53 1-56 34-99 (126)
68 2ojr_A Ubiquitin; lanthide-bin 99.2 7.9E-12 2.7E-16 96.0 5.5 53 1-56 52-104 (111)
69 2kzr_A Ubiquitin thioesterase 99.2 1.1E-11 3.9E-16 90.9 6.1 60 1-61 17-79 (86)
70 3rt3_B Ubiquitin-like protein 99.2 7.7E-12 2.6E-16 101.0 5.6 53 1-56 98-150 (159)
71 2dzm_A FAS-associated factor 1 99.2 5.9E-12 2E-16 95.7 3.8 58 1-60 25-84 (100)
72 1v2y_A 3300001G02RIK protein; 99.2 1.9E-12 6.7E-17 99.2 1.2 53 1-56 24-92 (105)
73 1wgh_A Ubiquitin-like 3, HCG-1 99.2 2E-11 7E-16 95.1 5.5 53 1-56 33-95 (116)
74 1wia_A Hypothetical ubiquitin- 99.2 1.9E-11 6.6E-16 90.9 4.7 55 1-61 24-79 (95)
75 3rt3_B Ubiquitin-like protein 99.2 3.2E-11 1.1E-15 97.3 6.2 56 1-58 19-75 (159)
76 3q3f_A Ribonuclease/ubiquitin 99.2 2.2E-11 7.4E-16 102.4 5.2 58 1-61 122-181 (189)
77 1wf9_A NPL4 family protein; be 99.2 1.8E-11 6.3E-16 93.6 4.2 58 1-61 23-96 (107)
78 3b08_A Polyubiquitin-C, ubiqui 99.2 3E-11 1E-15 95.9 5.5 53 1-56 93-145 (152)
79 3u30_A Ubiquitin, linear DI-ub 99.2 2.3E-11 8E-16 99.7 4.9 53 1-56 113-165 (172)
80 3u30_A Ubiquitin, linear DI-ub 99.1 3E-11 1E-15 99.0 5.5 54 1-57 37-90 (172)
81 3b08_A Polyubiquitin-C, ubiqui 99.1 4.4E-11 1.5E-15 95.0 6.2 56 1-59 17-72 (152)
82 2gow_A HCG-1 protein, ubiquiti 99.1 2.2E-11 7.6E-16 96.0 4.3 53 1-56 34-96 (125)
83 3u5c_f 40S ribosomal protein S 99.1 5E-12 1.7E-16 102.9 0.0 53 1-56 17-69 (152)
84 3shq_A UBLCP1; phosphatase, hy 98.9 2.9E-10 9.8E-15 102.6 2.7 56 1-57 21-77 (320)
85 1wjn_A Tubulin-folding protein 98.9 1.5E-09 5.1E-14 81.2 6.0 61 2-63 30-96 (97)
86 1oqy_A HHR23A, UV excision rep 98.9 1.1E-09 3.9E-14 100.4 5.7 52 1-54 24-77 (368)
87 2xzm_9 RPS31E; ribosome, trans 98.7 1E-09 3.5E-14 92.1 0.0 55 1-63 17-73 (189)
88 4a2n_B Isoprenylcysteine carbo 98.7 1.2E-08 4.2E-13 85.7 6.4 103 127-233 86-194 (194)
89 2io1_B Small ubiquitin-related 98.7 9.3E-09 3.2E-13 77.0 4.2 58 1-61 24-83 (94)
90 1wm3_A Ubiquitin-like protein 98.7 1.7E-08 5.8E-13 71.6 4.7 54 1-57 18-71 (72)
91 3a4r_A Nfatc2-interacting prot 98.6 3E-08 1E-12 71.7 5.2 54 1-57 25-78 (79)
92 2io0_B Small ubiquitin-related 98.6 4.8E-08 1.6E-12 72.7 5.0 53 1-56 22-74 (91)
93 2d07_B Ubiquitin-like protein 98.5 1.3E-07 4.5E-12 70.4 4.4 52 2-56 35-86 (93)
94 1wz0_A Ubiquitin-like protein 98.4 1.9E-07 6.5E-12 71.1 4.2 53 1-56 41-93 (104)
95 2k8h_A Small ubiquitin protein 98.4 1.8E-07 6.1E-12 72.0 4.0 53 1-56 43-95 (110)
96 2eke_C Ubiquitin-like protein 98.3 3.6E-07 1.2E-11 69.9 4.1 52 2-56 48-99 (106)
97 2pjh_A Protein NPL4, nuclear p 98.0 6.5E-06 2.2E-10 59.6 4.2 56 1-57 20-78 (80)
98 3kyd_D Small ubiquitin-related 97.8 2.1E-05 7.3E-10 60.9 4.5 52 2-56 58-109 (115)
99 3pge_A SUMO-modified prolifera 97.7 2.3E-05 7.8E-10 66.2 4.5 58 1-61 45-104 (200)
100 3tix_A Ubiquitin-like protein 97.6 4.7E-05 1.6E-09 63.9 4.4 57 2-61 74-132 (207)
101 4efo_A Serine/threonine-protei 97.5 5.2E-05 1.8E-09 56.7 3.6 55 1-58 30-87 (94)
102 3goe_A DNA repair protein RAD6 97.5 0.00012 4.1E-09 52.8 5.1 53 1-56 26-79 (82)
103 3v7o_A Minor nucleoprotein VP3 97.2 5.1E-05 1.7E-09 64.5 0.0 53 1-56 37-89 (227)
104 2kc2_A Talin-1, F1; FERM, adhe 96.9 0.00029 9.9E-09 55.4 2.1 56 1-57 28-120 (128)
105 2jxx_A Nfatc2-interacting prot 96.7 0.0024 8.1E-08 47.8 5.3 52 2-56 44-95 (97)
106 3uf8_A Ubiquitin-like protein 96.3 0.0026 8.7E-08 53.6 3.9 57 2-61 38-96 (209)
107 3ix6_A TS, tsase, thymidylate 96.3 0.00066 2.3E-08 61.9 0.0 53 1-56 37-89 (360)
108 4da1_A Protein phosphatase 1K, 95.4 0.0025 8.7E-08 58.0 0.0 58 1-61 46-105 (389)
109 2bps_A YUKD protein; ubiquitin 95.3 0.014 4.7E-07 42.2 3.6 54 2-56 24-80 (81)
110 2l76_A Nfatc2-interacting prot 94.5 0.058 2E-06 40.1 5.3 54 3-59 39-92 (95)
111 3qx1_A FAS-associated factor 1 93.0 0.16 5.6E-06 36.1 5.2 54 2-57 25-81 (84)
112 3ivf_A Talin-1; FERM domain, c 92.6 0.13 4.4E-06 46.2 5.2 56 2-57 20-82 (371)
113 2daj_A KIAA0977 protein, COBL- 91.7 0.18 6.3E-06 36.7 4.0 57 1-61 27-84 (91)
114 2dzk_A UBX domain-containing p 91.3 0.4 1.4E-05 36.0 5.8 59 2-61 31-92 (109)
115 4e71_A Plexin-B2, MM1; transme 91.3 0.29 9.8E-06 37.3 4.9 54 4-57 33-108 (111)
116 3ai5_A Yeast enhanced green fl 90.7 0.11 3.9E-06 46.2 2.5 29 29-57 275-303 (307)
117 2r2o_A Plexin-B1; effector dom 90.4 0.45 1.5E-05 37.5 5.4 53 4-56 50-125 (138)
118 4a3p_A Ubiquitin carboxyl-term 88.0 0.92 3.1E-05 37.9 6.1 59 2-61 147-212 (217)
119 2al3_A TUG long isoform; TUG U 88.0 1.5 5.1E-05 32.1 6.4 55 1-59 26-81 (90)
120 3jyu_A Ubiquitin carboxyl-term 87.1 1.5 5.1E-05 37.0 6.9 59 2-61 159-224 (231)
121 2kvr_A Ubiquitin carboxyl-term 87.0 0.45 1.5E-05 37.0 3.3 28 2-30 63-90 (130)
122 1wj4_A KIAA0794 protein; UBX d 86.5 0.95 3.3E-05 34.7 4.9 58 3-62 62-122 (124)
123 1y8x_B Ubiquitin-activating en 86.2 1.4 4.7E-05 32.7 5.4 64 1-65 11-90 (98)
124 3h6n_A Plexin-D1; structural g 85.4 0.73 2.5E-05 35.8 3.7 54 4-57 26-102 (127)
125 3onh_A Ubiquitin-activating en 85.0 0.72 2.5E-05 35.9 3.5 54 4-61 19-81 (127)
126 2cr5_A Reproduction 8; UBX dom 83.6 3 0.0001 31.0 6.4 56 3-60 42-99 (109)
127 1s3s_G P47 protein; AAA ATPase 83.5 2 6.9E-05 32.9 5.5 53 2-54 70-123 (127)
128 4e74_A Plexin-A4; RBD, structu 83.0 2.5 8.4E-05 32.4 5.7 53 4-56 36-111 (117)
129 3po0_A Small archaeal modifier 77.4 2.8 9.6E-05 29.5 4.2 48 2-56 25-82 (89)
130 3kuz_A Plexin-C1; structural g 74.9 4.1 0.00014 31.5 4.7 53 4-56 48-123 (126)
131 3u52_E Phenol hydroxylase comp 74.7 4.4 0.00015 31.0 4.8 56 1-58 44-108 (119)
132 1vjk_A Molybdopterin convertin 73.8 4.8 0.00016 29.0 4.7 48 2-56 34-91 (98)
133 3hm6_X Plexin-B1; structural g 72.3 4.5 0.00015 39.2 5.3 53 4-56 283-358 (644)
134 2eel_A Cell death activator CI 71.6 14 0.00047 26.9 6.7 53 5-60 28-80 (91)
135 1tt5_B Ubiquitin-activating en 70.1 2.4 8.1E-05 39.2 2.8 64 2-66 348-429 (434)
136 2c7h_A RBBP6, retinoblastoma-b 69.1 4.9 0.00017 29.0 3.7 53 3-60 27-81 (86)
137 3ig3_A Plxna3 protein; plexin 68.1 6.4 0.00022 38.1 5.3 53 4-56 256-331 (627)
138 2q5w_D Molybdopterin convertin 66.9 6.9 0.00024 26.5 4.1 46 2-56 23-70 (77)
139 2juo_A GA-binding protein alph 66.6 6 0.00021 28.6 3.7 48 4-54 12-59 (89)
140 1oey_A P67-PHOX, neutrophil cy 65.9 7.5 0.00026 27.8 4.2 43 1-44 20-65 (83)
141 2ylm_A Ubiquitin carboxyl-term 65.6 2.8 9.6E-05 39.7 2.4 27 3-30 44-70 (530)
142 3rpf_C Molybdopterin convertin 65.6 5.7 0.00019 27.0 3.4 48 4-56 20-67 (74)
143 3qa8_A MGC80376 protein; kinas 65.4 8.7 0.0003 37.4 5.9 43 1-45 328-370 (676)
144 1ryj_A Unknown; beta/alpha pro 59.9 20 0.00068 24.1 5.3 43 2-56 21-63 (70)
145 4eut_A Serine/threonine-protei 57.7 7.6 0.00026 34.1 3.6 47 2-49 329-375 (396)
146 2g1e_A Hypothetical protein TA 56.2 7.4 0.00025 27.1 2.7 51 3-56 23-83 (90)
147 1tyg_B YJBS; alpha beta barrel 55.4 27 0.00092 24.9 5.6 47 2-56 33-80 (87)
148 1rws_A Hypothetical protein PF 54.5 12 0.0004 25.7 3.5 43 2-56 28-70 (77)
149 2nvu_B Maltose binding protein 52.8 13 0.00045 36.4 4.8 63 2-65 719-799 (805)
150 1fm0_D Molybdopterin convertin 51.1 10 0.00036 25.7 2.7 47 3-56 24-74 (81)
151 3fn2_A Putative sensor histidi 49.8 15 0.00052 27.3 3.5 49 18-71 44-92 (106)
152 1f0z_A THis protein; ubiquitin 48.0 30 0.001 22.7 4.6 47 2-56 13-59 (66)
153 1f2r_I Inhibitor of caspase-ac 46.3 43 0.0015 24.7 5.5 53 5-60 37-91 (100)
154 2kl0_A Putative thiamin biosyn 45.2 37 0.0013 23.1 4.8 48 3-58 13-60 (73)
155 2l32_A Small archaeal modifier 44.2 33 0.0011 23.5 4.5 44 1-57 17-60 (74)
156 2k5p_A THis protein, thiamine- 43.3 29 0.00099 24.0 4.1 47 3-57 16-63 (78)
157 1ip9_A BEM1 protein; ubiquitin 42.9 27 0.00092 25.1 3.8 54 1-58 28-84 (85)
158 1ibx_B Chimera of IGG binding 42.4 58 0.002 25.6 6.0 54 5-61 82-137 (145)
159 1d4b_A CIDE B, human cell deat 37.6 26 0.00088 26.9 3.2 52 5-60 54-105 (122)
160 1wgk_A Riken cDNA 2900073H19 p 36.8 15 0.00053 27.4 1.9 48 5-56 43-101 (114)
161 3dwg_C 9.5 kDa culture filtrat 36.2 93 0.0032 21.5 6.0 50 4-56 25-86 (93)
162 2hj1_A Hypothetical protein; s 35.7 46 0.0016 24.1 4.3 48 2-56 33-82 (97)
163 2l52_A Methanosarcina acetivor 34.7 54 0.0018 23.4 4.5 50 4-56 27-92 (99)
164 1rpq_W Peptide E131; receptor- 34.4 13 0.00043 20.3 0.7 10 168-177 1-10 (26)
165 2qjl_A URM1, ubiquitin-related 32.3 29 0.00099 24.8 2.7 50 3-56 30-92 (99)
166 2cu3_A Unknown function protei 31.9 68 0.0023 20.8 4.3 46 3-56 12-57 (64)
167 1pqs_A Cell division control p 30.5 48 0.0016 23.1 3.5 33 1-34 8-46 (77)
168 1v8c_A MOAD related protein; r 28.4 60 0.002 25.8 4.2 49 5-56 23-80 (168)
169 2inc_C TOUB protein; DIIRON, 4 28.3 1.3E+02 0.0046 21.3 5.5 54 1-56 19-79 (83)
170 3ge3_C Toluene-4-monooxygenase 27.8 1.2E+02 0.0041 21.6 5.2 54 1-56 21-80 (84)
171 2k0q_A Putative uncharacterize 27.2 18 0.0006 25.2 0.7 15 44-58 8-23 (74)
172 1vd2_A Protein kinase C, IOTA 23.3 1.7E+02 0.0058 20.8 5.4 34 1-35 22-57 (89)
173 2ylm_A Ubiquitin carboxyl-term 22.8 1.3E+02 0.0043 28.2 5.9 55 1-56 358-418 (530)
174 1zrj_A E1B-55KDA-associated pr 22.5 55 0.0019 20.9 2.3 17 4-22 12-28 (50)
175 1h1j_S THO1 protein; SAP domai 22.0 57 0.0019 20.9 2.3 18 4-23 7-24 (51)
176 2k9x_A Tburm1, uncharacterized 21.3 34 0.0012 25.3 1.3 48 5-56 35-95 (110)
177 3he4_B Synzip5; heterodimeric 20.4 53 0.0018 20.1 1.8 14 4-17 2-15 (46)
No 1
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4e-17 Score=121.42 Aligned_cols=59 Identities=37% Similarity=0.587 Sum_probs=55.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
|++++||+|||++|+++.+|+||+||||++..+|++|+|+++|++||+++|+||++|||
T Consensus 30 v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~KDL 88 (88)
T 2dzj_A 30 VEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 88 (88)
T ss_dssp ECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEECCC
T ss_pred cCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEEeC
Confidence 47899999999999995489999999999977899999999999999999999999997
No 2
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.56 E-value=4.2e-15 Score=111.59 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=53.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEE--EecC-CCccchhhh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVF--IKDL-GPQIGWSTV 68 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~--vkdl-g~qi~w~~v 68 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|+ +++. |+|++|++|
T Consensus 17 v~~~~TV~~LK~~I~~~-~gi~~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v 84 (98)
T 1yx5_B 17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSV 84 (98)
T ss_dssp CCTTCBHHHHHHHHHHH-TCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEECCCCC--------
T ss_pred ECCCCcHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccC
Confidence 57889999999999999 899999999999 89999999999999999999987 5777 579999965
No 3
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.54 E-value=4.1e-15 Score=111.66 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=50.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|+|++||.+||++|+++ +|+||++|||++ .|++|+|+.||+||||++|+||++
T Consensus 38 v~p~DTI~~LK~~I~~k-~Gip~~qQrLif--~Gk~LkD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 38 CLGEDSVGDFKKVLSLQ-IGTQPNKIVLQK--GGSVLKDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp EETTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred ECCcCHHHHHHHHHHHH-hCCCHHHEEEEe--CCEEccCcCCHHHcCCCCCCEEEE
Confidence 46899999999999999 899999999999 999999999999999999999986
No 4
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=7.5e-15 Score=110.05 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=56.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CCcc----cCCchhhhhcCCCCCceEEEecCCCccc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI----LKDSDDIKSLGLKNGDMVFIKDLGPQIG 64 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~Gk~----L~d~ktL~~ygv~~~~tl~vkdlg~qi~ 64 (233)
+++++||++||++|+++ +|+|+++|||++.. +|+. ++|+++|++||+++|++||++|++||+.
T Consensus 25 v~~~~TV~~lK~ki~~~-~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~P~~~ 92 (95)
T 1v6e_A 25 YSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGP 92 (95)
T ss_dssp ECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCCSS
T ss_pred cCccCHHHHHHHHHHHH-HCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECCcccc
Confidence 46889999999999999 99999999999943 3454 4899999999999999999999999975
No 5
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.52 E-value=6.8e-15 Score=108.91 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-----CCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-----KGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-----~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
+++++||++||++|+++ +|+||++|||++.+ .|+.|+|+++|++||+++|+|||+.|..|
T Consensus 21 ~~~s~TI~~lK~ki~~~-~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 21 YGLAQTIESIKENVFTH-FATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp EETTSBHHHHHHHHHTT-SCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred cCccCcHHHHHHHHHHH-HCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 36789999999999999 99999999999732 37899999999999999999999999887
No 6
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=1.4e-14 Score=110.32 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=51.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.|||++|+++ +|+|++||||++ .||+|+|+++|+||||++|+||++.
T Consensus 45 v~p~dTV~~lK~~Ia~k-~Gip~~qQrLi~--~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 45 CNTDDTIGDLKKLIAAQ-TGTRWNKIVLKK--WYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EETTSBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eCCCCcHHHHHHHHHHH-hCCCHHHEEEEE--CCEECCCCCCHHHcCCCCCCEEEEE
Confidence 46899999999999999 899999999999 8999999999999999999999873
No 7
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=2.8e-14 Score=108.61 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=52.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
|++++||.+||++|+++ +|+||++|||+| +||+|+|++||+||||++|++|++--+
T Consensus 36 v~~~~TV~~lK~kI~~k-~gip~~qQrLI~--~GKiL~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 36 TRLHITGRELRSKIAET-FGLQENYIKIVI--NKKQLQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp EESSSBHHHHHHHHHHH-TTCCSTTCEEEE--TTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred eCCcCHHHHHHHHHHHH-HCcCHHHeEEEe--CCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 46889999999999999 899999999999 899999999999999999999976544
No 8
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=7.6e-14 Score=101.90 Aligned_cols=61 Identities=15% Similarity=0.307 Sum_probs=55.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCccc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQIG 64 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~qi~ 64 (233)
|++++||++||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++ +.+|++++
T Consensus 24 v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~--~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~~ 86 (87)
T 1wh3_A 24 INPNSFILGLKQQIEDQ-QGLPKKQQQLEF--QGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSS 86 (87)
T ss_dssp ECSSSBHHHHHHHHHHH-TCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTEEEEEEECSCCCSCC
T ss_pred eCCCChHHHHHHHHHHH-hCCChHHEEEEE--CCEEccCCCCHHHCCCCCCCEEEEEEeccCCCCC
Confidence 46889999999999999 899999999999 899999999999999999999874 67777654
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.46 E-value=6.3e-14 Score=100.69 Aligned_cols=53 Identities=28% Similarity=0.311 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|+||++
T Consensus 21 v~~~~tV~~lK~~i~~~-~gip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~l~l 73 (79)
T 3phx_B 21 VRLTQTVAHLKQQVSGL-EGVQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFM 73 (79)
T ss_dssp ECTTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred ECCcChHHHHHHHHHhh-cCCCHHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence 46889999999999999 899999999999 899999999999999999999986
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.45 E-value=1e-13 Score=98.65 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=52.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++.+-
T Consensus 20 v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 20 VAPESTVLQFKEAINKA-NGIPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred ECCCCcHHHHHHHHHHH-hCCCHHHEEEEE--CCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 46889999999999999 799999999999 899999999999999999999999764
No 11
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.44 E-value=7.3e-14 Score=109.48 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CCc---cc-CCchhhhhcCCCCCceEEEecCCCcc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGK---IL-KDSDDIKSLGLKNGDMVFIKDLGPQI 63 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~Gk---~L-~d~ktL~~ygv~~~~tl~vkdlg~qi 63 (233)
+++++||++||++|+++ +|+||++|||++.. +|+ +| +|+++|++||+++|++||++|++||+
T Consensus 24 v~~~~TV~~lK~ki~~~-~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~~ 90 (122)
T 1t0y_A 24 YPAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGN 90 (122)
T ss_dssp EETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTCC
T ss_pred eCCCCcHHHHHHHHHHH-hCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCCC
Confidence 35789999999999999 89999999999943 345 34 78999999999999999999999998
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.44 E-value=7.2e-14 Score=102.62 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcc-cCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKI-LKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~-L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ +|+|+++|||++ +|+. |+|+++|++||+++|++|++.
T Consensus 27 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~lL~D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 27 VDYRDTLLVVKQKIERS-QHIPVSKQTLIV--DGIVILREDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp ECTTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCCSSSBHHHHTCCTTSCEEEE
T ss_pred ECCCChHHHHHHHHHHH-HCcChHHEEEEE--CCEEecCCcCCHHHcCCCCCCEEEEE
Confidence 46889999999999999 899999999999 8999 999999999999999999874
No 13
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.1e-13 Score=102.69 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=49.7
Q ss_pred CCCcccHHHHHHHH-HHHhCCCCcCceeEEEcCCCcccCCchhhhhcCC-CCCceEEE
Q psy9586 1 VSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGL-KNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i-~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv-~~~~tl~v 56 (233)
+++++||.+||++| +++ +|+|+++|||+| +||+|+|+++|++||+ ++|++|++
T Consensus 20 v~~~~TV~~lK~~I~~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEE-KASHISEIKLLL--KGKVLHDNLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CCTTCBHHHHHHHHHHTT-SCSSSTTEEEEE--TTEECCTTCBHHHHCCCGGGCEEEE
T ss_pred CCCCCcHHHHHHHHHHHh-cCCChHHEEEEE--CCEECcCcCCHHHcCCCCCCCEEEE
Confidence 35899999999999 888 899999999999 9999999999999999 69999987
No 14
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=1.2e-13 Score=98.76 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++.
T Consensus 21 v~~~~tv~~lK~~i~~~-~gip~~~qrL~~--~g~~L~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 21 LSRLTKVEELRRKIQEL-FHVEPGLQRLFY--RGKQMEDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTTTTTCCTTCEEEEE
T ss_pred cCCCCCHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEEE
Confidence 46889999999999999 899999999999 8999999999999999999999874
No 15
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.42 E-value=1.7e-13 Score=101.09 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||++||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 17 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~l~l 69 (88)
T 4fbj_B 17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHL 69 (88)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTSBTTTTTCCTTCEEEE
T ss_pred ECCCCCHHHHHHHHHHH-HCcChhHEEEEE--CCeECCCCCcHHHcCCCCCCEEEE
Confidence 57899999999999999 799999999999 899999999999999999999876
No 16
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2e-13 Score=103.58 Aligned_cols=58 Identities=29% Similarity=0.423 Sum_probs=53.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++....|
T Consensus 44 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~gI~~g~tI~lv~~~P 101 (101)
T 3m63_B 44 VAPESTVLQFKEAINKA-NGIPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLVKSQP 101 (101)
T ss_dssp CCTTSBHHHHHHHHHHH-HSCCSTTCCEEE--TTEECCTTSBTTTTTCCTTEEEEECCCC-
T ss_pred eCCCCCHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCcCcHHHCCCCCCCEEEEEeCCC
Confidence 57899999999999999 799999999999 89999999999999999999999876554
No 17
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.41 E-value=3.3e-13 Score=97.91 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=52.5
Q ss_pred CCCcccHHHHHHHHHHHh--CCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~--~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|++++||++||++|+++. +|+++++|||++ +|+.|+|+++|++||+++|++|++..-.+
T Consensus 22 v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 22 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp ECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE--TTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred ECCCCCHHHHHHHHHhhccccCCCHHHeEEEE--CCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 468899999999999963 789999999999 89999999999999999999999876544
No 18
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=4.2e-13 Score=99.75 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhC--CCCcCceeEEEcCCCcccCCchhhhhc--CCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKS--QLYPDRQAVRLEIKGKILKDSDDIKSL--GLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~--~i~~~rQrL~~~~~Gk~L~d~ktL~~y--gv~~~~tl~v 56 (233)
|++++||.+||++|+++ . +++++||||++ +|+.|+|+++|++| |++++++||+
T Consensus 26 v~~~~TV~~lK~~I~~~-~~~~i~~~~QrLi~--~Gk~L~D~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRV-YPERPRPEDQRLIY--SGKLLLDHQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp CCTTSCHHHHHHHHHHH-STTCCCTTTCEEEE--TTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred cCCCCcHHHHHHHHHHH-hcCCCChHHeEEEE--CCEECcCcCCHHHHhcCCCCCCEEEE
Confidence 45899999999999998 6 99999999999 89999999999999 9999999986
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.40 E-value=3.1e-13 Score=95.39 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||++||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 17 v~~~~tv~~lK~~i~~~-~~i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 1ndd_A 17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHL 69 (76)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred ECCCChHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 57899999999999999 799999999999 899999999999999999999875
No 20
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=1.9e-13 Score=103.32 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CCcc---c-CCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI---L-KDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~Gk~---L-~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|++++||++||++|+++ +|+||++|||++.. +|+. | +|+++|++||+++|++|++.|..|
T Consensus 33 v~~~~TV~~LK~kIe~~-~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~~p 97 (97)
T 2kj6_A 33 FSPQMSVEAVKEKLWKK-CGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP 97 (97)
T ss_dssp ECTTCCHHHHHHHHHHH-HCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECCC
T ss_pred eCCCChHHHHHHHHHHH-HCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeCCC
Confidence 46889999999999999 89999999999942 2343 4 889999999999999999999765
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=4.3e-13 Score=98.37 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=52.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|++++||++||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++ +..|+
T Consensus 26 v~~~~tV~~lK~~i~~~-~gip~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 26 VSRKATIEELRERVWAL-FDVRPECQRLFY--RGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp ECTTCBHHHHHHHHHHH-SCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHH-HCcChhhEEEEE--CCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 46889999999999999 899999999999 899999999999999999999875 44444
No 22
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.40 E-value=1.4e-13 Score=107.46 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCC-------CceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKN-------GDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~-------~~tl~v 56 (233)
+++++||.+||++|+++ +|+||++|||++ +|++|+|++||+|||+++ ++||++
T Consensus 18 ve~sdTV~~lK~kI~~~-~giPp~qQrLI~--~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGI-LKRPPDEQRLYK--DDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EETTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred cCCCChHHHHHHHHHHH-HCCCHHHeEEEe--CCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 46889999999999999 899999999999 899999999999999999 999986
No 23
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=100.80 Aligned_cols=55 Identities=27% Similarity=0.280 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
|++++||++||++|+++ +|+|+++|||++ +|+.|+|+++|++||+++|++|++..
T Consensus 21 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~~I~~g~~i~l~~ 75 (88)
T 2hj8_A 21 VRLTQTVAHLKQQVSGL-EGVQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFMNL 75 (88)
T ss_dssp EESSSBHHHHHHHHHHH-TCSCTTTEEEES--SSSCCCTTSBHHHHHCSTTCEEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-hCCChhHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 46789999999999999 899999999999 89999999999999999999998743
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=3e-13 Score=101.25 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ +|+|+++|||++ +|+.|+|+ ++|++||+++|++|++.
T Consensus 31 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 31 VDRTETVSSLKDKIHIV-ENTPIKRMQLYY--SGIELADDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp ECTTCBHHHHHHHHHHH-SSSCTTTEEEEE--TTEEECCTTSBHHHHTCCTTEEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCEECCCCcccHHHCCCCCCCEEEEE
Confidence 46889999999999999 899999999999 89999999 99999999999999863
No 25
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.39 E-value=4.2e-13 Score=99.48 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEE---EcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR---LEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~---~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.|||++|+++ +|+|++||||+ + +|++|+|+++|++||+++|++|++-
T Consensus 24 v~~~~TV~~lK~~I~~~-~gip~~~QkLi~~k~--~Gk~L~D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 24 LSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKV--KGKPAENDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp CCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEE--TTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred eCCCCCHHHHHHHHHHH-HCcCHHHeEEEeecc--CCcCcCCCCCHHHcCCCCCCEEEEE
Confidence 57899999999999999 99999999999 8 8999999999999999999999874
No 26
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.7e-13 Score=96.56 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++.
T Consensus 24 v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 24 VPEDELVSTLKQLVSEK-LNVPVRQQRLLF--KGKALADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp ECSSCBHHHHHHHHHHH-TCCCTTTCEEEE--TTEECCTTSBGGGGTCCSSBCCEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 46889999999999999 899999999999 8999999999999999999999874
No 27
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.39 E-value=2.7e-13 Score=100.26 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=50.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.+||++|+++ .|+++++|||++ +|+.|+|+++|++||+++|++|++.
T Consensus 34 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 34 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred ECCCCCHHHHHHHHHhh-hCCChhhEEEEE--CCeECCCcCcHHHCCCCCCCEEEEE
Confidence 46889999999999999 799999999999 8999999999999999999999874
No 28
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=7.9e-13 Score=98.79 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=52.6
Q ss_pred CCCcccHHHHHHHHHHHh--CCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 1 VSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~--~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
|++++||++||++|+++. +|+|+++|||++ +|+.|+|+++|++||+++|++|++....
T Consensus 17 v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIY--AGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE--TTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred ECCCCHHHHHHHHHHhhcccCCCChhhEEEEE--CCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 578999999999999974 689999999999 8999999999999999999999875543
No 29
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.39 E-value=2.3e-13 Score=102.45 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCc---cc-CCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK---IL-KDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk---~L-~d~ktL~~ygv~~~~tl~vkd 58 (233)
+++++||++||++|+++ +|+||++|||++...|+ .| +|+++|++||+++|+||++.|
T Consensus 34 v~~~~TV~~LK~kI~~~-~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 34 LAKDLTVAQLKTKLEIL-TGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EETTCBHHHHHHHHHHH-HCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred eCccCHHHHHHHHHHHH-HCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 35789999999999999 89999999999943355 55 899999999999999999988
No 30
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=3.6e-13 Score=97.50 Aligned_cols=58 Identities=24% Similarity=0.432 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|++++||++||++|+++ .++|+++|||++ +|+.|+|+++|++||++++++|++ +-.|+
T Consensus 20 v~~~~tV~~lK~~i~~~-~~ip~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 20 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred ECCCCcHHHHHHHHHHH-HCCCHHHEEEEE--CCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 57899999999999999 799999999999 899999999999999999999875 44443
No 31
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=3.4e-13 Score=99.07 Aligned_cols=55 Identities=27% Similarity=0.481 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++..
T Consensus 28 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 28 VSPDCTVKDLKSQLQPI-TNVLPRGQKLIF--KGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp ECTTSBHHHHHHHHHHH-HCCCTTTCEEEE--TTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred ECCCCcHHHHHHHHHHH-HCcChHHEEEEE--CCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 46889999999999999 899999999999 89999999999999999999998754
No 32
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=100.34 Aligned_cols=53 Identities=28% Similarity=0.375 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 34 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~y~I~~gstI~l 86 (93)
T 2l7r_A 34 VTGQETVAQIKAHVASL-EGIAPEDQVVLL--AGAPLEDEATLGQCGVEALTTLEV 86 (93)
T ss_dssp CCSSCBHHHHHHHHHHH-HTCCGGGCEEEE--TTEECCTTSBHHHHTCCSSCEEEE
T ss_pred eCCCCcHHHHHHHHHHH-hCcChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence 57899999999999999 899999999999 899999999999999999999986
No 33
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.38 E-value=3.9e-13 Score=103.06 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=52.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCC-CCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGL-KNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv-~~~~tl~vkdlg~ 61 (233)
|++++||.+||++|+++ .|+||++|||++ +|+.++|++||++||+ ++|+|+|+.-++.
T Consensus 43 V~ps~TV~~LK~~I~~k-~Gipp~~QRli~--ggkll~D~~TL~~ygI~~~G~t~hL~l~~~ 101 (105)
T 4dbg_A 43 VRPDMTVASLKDMVFLD-YGFPPVLQQWVI--GQRLARDQETLHSHGVRQNGDSAYLYLLSA 101 (105)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEEECTTCBTGGGTCCSTTCEEEEEECCC
T ss_pred ECCcChHHHHHHHHHHH-hCCCHHHEEEec--cCeEccCcCcHHHcCCCCCCCEEEEEEEec
Confidence 47899999999999999 799999999999 8888899999999999 6999999876654
No 34
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.38 E-value=3.5e-13 Score=98.28 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 29 v~~~~tV~~lK~~i~~~-~gip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~i~l 81 (88)
T 3dbh_I 29 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHL 81 (88)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGCCEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred ECCCCCHHHHHHHHHHH-HCcCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEE
Confidence 46889999999999999 799999999999 899999999999999999999986
No 35
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.38 E-value=6.1e-14 Score=110.58 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=8.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEE--EecCCCccchhhhhhHHh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVF--IKDLGPQIGWSTVFMAEY 73 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~--vkdlg~qi~w~~vf~~Ey 73 (233)
|++++||+|||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|+||+ ++..|+++.|....+.++
T Consensus 17 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~sl~~la~k 88 (128)
T 3u5e_m 17 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88 (128)
T ss_dssp ---------------------------------------------------------------CCCHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHH-hCcChHHEEEEE--CCEECCCCCchhhhccCCCCEEEEEEEcCCCCCChhHHHHHHH
Confidence 56899999999999999 899999999999 89999999999999999999876 588899999986666553
No 36
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.38 E-value=3.8e-13 Score=101.87 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=50.0
Q ss_pred CCCcccHHHHHHHH-HHHhCCCCcCceeEEEcCCCcccCCchhhhhcCC-CCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGL-KNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i-~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv-~~~~tl~vk 57 (233)
|++++||.+||++| +++ +|+|+++|||+| +|++|+|+++|++||+ ++|++|++-
T Consensus 38 v~~~~TV~~lK~~I~~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEE-KASHISEIKLLL--KGKVLHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp ECTTCBHHHHHHHHHHTT-SCSCGGGEEEEE--TTEEECTTCBGGGSCCBTTBCEEEEE
T ss_pred cCCCChHHHHHHHHHHHh-cCCChhhEEEEE--CCEECcCcCCHHHcCcCCCCCEEEEE
Confidence 35899999999999 776 899999999999 9999999999999999 999999874
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=5e-13 Score=98.53 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|++++||++||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++ +..|+
T Consensus 26 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 26 MEPSDTIENLKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CCTTSBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ECCCChHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 57899999999999999 799999999999 899999999999999999999875 44444
No 38
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.37 E-value=6.3e-13 Score=93.83 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ .++|+++|||.+ +|+.|+|+++|++||+++|++|++
T Consensus 17 v~~~~tv~~lK~~i~~~-~~i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3a9j_A 17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQRESTLHL 69 (76)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTGGGTCCTTCEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEE
Confidence 57889999999999999 799999999999 899999999999999999999876
No 39
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=7.4e-13 Score=101.15 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=53.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCCc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQ 62 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~q 62 (233)
|++++||.+||++|+++ .|+++++|||++ +|+.|+|+++|++||+++|++|++..-.++
T Consensus 18 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 18 LEPSNTILETKTKLAQS-ISCEESQIKLIY--SGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp CCTTSBHHHHHHHHHHT-TTSCGGGCEEEE--TTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred ECCCCcHHHHHHHHHHH-HCCChhhEEEEE--CCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 57899999999999999 899999999999 899999999999999999999998655443
No 40
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.36 E-value=3.3e-13 Score=105.50 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=49.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCC-------CCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLK-------NGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~-------~~~tl~v 56 (233)
|++++||++||++|+++ +|+|+++|||++ +||+|+|+++|++||++ +++||++
T Consensus 18 v~~sdTV~~lK~kI~~~-egIP~~qQrLi~--~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 18 AKESSTVFELKRIVEGI-LKRPPEEQRLYK--DDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EETTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred eCCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 46889999999999999 899999999999 89999999999999999 7999875
No 41
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.36 E-value=3.2e-13 Score=96.94 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ +|+|+++|||+| +|+.|+|++||++||+++|++|++
T Consensus 20 v~~~~tv~~lk~~i~~~-~gi~~~~qrL~~--~G~~L~d~~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 20 VKMTTHLKKLKESYCQR-QGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEV 72 (79)
T ss_dssp EETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCHHHHTCCTTEEEEE
T ss_pred ECCCChHHHHHHHHHHH-HCCCcccEEEEE--CCEEeCCCCCHHHcCCCCCCEEEE
Confidence 45789999999999999 899999999999 899999999999999999999876
No 42
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.36 E-value=4.4e-13 Score=98.23 Aligned_cols=53 Identities=17% Similarity=0.481 Sum_probs=49.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+ +|+|||+.
T Consensus 34 v~~~~tV~~lK~~i~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 34 VGAQMNVKEFKEHIAAS-VSIPSEKQRLIY--QGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp EETTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEECCCCCcHHHcCC-CCcEEEEE
Confidence 46789999999999999 799999999999 9999999999999999 89999874
No 43
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.36 E-value=4.6e-13 Score=101.57 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=49.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCc-CceeEEEcCCCcccCCchhhhhc--CCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDIKSL--GLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~-~rQrL~~~~~Gk~L~d~ktL~~y--gv~~~~tl~v 56 (233)
|++++||.+||++|+++.+|.+| ++|||+| +||+|+|+++|++| |+++|+||++
T Consensus 42 v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy--~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 42 CFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY--SGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE--TTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHhcCCCChhhEEEEE--CCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 47899999999999997567665 9999999 99999999999999 9999999987
No 44
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=6.6e-13 Score=95.94 Aligned_cols=53 Identities=23% Similarity=0.443 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.|||++|+++ .++|+++|||++ +|+.|+|+++|++||++++++|++
T Consensus 20 v~~~~tV~~lK~~i~~~-~~i~~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~l~l 72 (85)
T 3mtn_B 20 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKWSTLFL 72 (85)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred ECCCCCHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCCCCHHHcCCCCCCEEEE
Confidence 46889999999999999 799999999999 899999999999999999999876
No 45
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=6.3e-13 Score=100.75 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vkdl 59 (233)
|++++||+|||++|+++ .|+++++|||++ +|+.|+|+ ++|++||+++|++|++.+-
T Consensus 28 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 28 VNPDFELSNFRVLCELE-SGVPAEEAQIVY--MEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp ECTTCBHHHHHHHHHHH-TCCCGGGBCEEE--TTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred cCCCCCHHHHHHHHHHH-HCcChHHeEEEE--CCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 46789999999999999 899999999999 89999887 6999999999999998653
No 46
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=7.9e-13 Score=99.32 Aligned_cols=53 Identities=21% Similarity=0.430 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 39 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l 91 (98)
T 4hcn_B 39 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 91 (98)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTCBSGGGTCCTTEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-hCCChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence 57899999999999999 799999999999 899999999999999999999886
No 47
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.6e-13 Score=103.83 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++++||.|||++++++ .++|+++|||+| +||.|+|++||++||+++|.|||+
T Consensus 33 v~~d~TV~dLKe~ls~~-~~iP~e~qrLIy--~GKiLKD~eTL~~~gIk~g~TIhL 85 (118)
T 2daf_A 33 FKVDTILKYLKDHFSHL-LGIPHSVLQIRY--SGKILKNNETLVQHGVKPQEIVQV 85 (118)
T ss_dssp ECSSSCSHHHHHHHHHH-HTCCTTTEEEEE--TTEEECSSCCHHHHSCCSSCEEEE
T ss_pred eCCCCcHHHHHHHHHhh-hCCChHHEEEEE--CCeEcCCcchHHHcCCCCCCEEEE
Confidence 46899999999999999 799999999999 899999999999999999999987
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.34 E-value=9.3e-13 Score=99.76 Aligned_cols=56 Identities=29% Similarity=0.404 Sum_probs=52.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++..-
T Consensus 41 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 41 VPENSSVQQFKEEISKR-FKSHTDQLVLIF--AGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp ECSCCCHHHHHHHHHHH-HTCCGGGEEEEE--TTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred ECCCCCHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 46889999999999999 799999999999 899999999999999999999987553
No 49
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.34 E-value=1.1e-12 Score=97.39 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ .++++++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 18 v~~~~TV~~LK~~i~~~-~gip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 18 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 70 (96)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred ECCCCCHHHHHHHHHhh-hCCChhHEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 57899999999999999 799999999999 899999999999999999999876
No 50
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=7.4e-13 Score=100.21 Aligned_cols=54 Identities=30% Similarity=0.550 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++.
T Consensus 38 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 38 VTDTCTIQQLKEEISQR-FKAHPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp EETTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCcCcHHHCCCCCCCEEEEE
Confidence 46789999999999999 799999999999 8999999999999999999999874
No 51
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.33 E-value=1.2e-12 Score=96.22 Aligned_cols=54 Identities=17% Similarity=0.489 Sum_probs=49.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
|++++||.+||++|+++ .++++++|||++ +|+.|+|+++|++||+ +|++|++..
T Consensus 22 v~~~~tV~~lK~~i~~~-~gip~~~qrLi~--~Gk~L~d~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 22 VGAQMNVKEFKEHIAAS-VSIPSEKQRLIY--QGRVLQDDKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp EETTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCeECCCCCCHHHcCC-CCcEEEEEe
Confidence 45789999999999999 799999999999 9999999999999999 899998744
No 52
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=6.9e-13 Score=98.92 Aligned_cols=54 Identities=28% Similarity=0.453 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||++||++|+++ .++++++|||++ +|+.|+|+++|++||+++|++|++.
T Consensus 33 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 33 LAENSNVRRFKKQISKY-LHCNADRLVLIF--TGKILRDQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp EETTCCHHHHHHHHHHH-TCSCTTTBCCEE--TTEECCTTSCHHHHTCCTTEEEECC
T ss_pred ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEECCCcCCHHHCCCCCCCEEEEE
Confidence 35789999999999999 899999999999 8999999999999999999999863
No 53
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=2.1e-12 Score=98.51 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=53.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|++++||.+||++|+++ .|+++++|||++ +|+.|+|+++|++||+++|++|++..-.+
T Consensus 40 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 40 VRSTDTVFHMKRRLHAA-EGVEPGSQRWFF--SGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp ECTTSHHHHHHHHHHHT-TCCCSTTCEEEE--TTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred eCCCCcHHHHHHHHHHH-HCcCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 46789999999999999 899999999999 89999999999999999999999866544
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.31 E-value=2.2e-12 Score=99.09 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=53.4
Q ss_pred CCC-cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCcc
Q psy9586 1 VSG-SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQI 63 (233)
Q Consensus 1 v~~-~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~qi 63 (233)
|++ ++||.+||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++ +-.|+.+
T Consensus 47 v~~l~~TV~~LK~~I~~~-~gip~~~QrL~~--~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GGk~ 109 (111)
T 1we6_A 47 VQSLSENVGSLKEKIAGE-IQIPANKQKLSG--KAGFLKDNMSLAHYNVGAGEILTLSLRERSGPS 109 (111)
T ss_dssp ESCSSSBHHHHHHHHHHH-TTCCTTTSEEEC--SSSBCCTTSBTTTTTCSSSCEEEEECSSCCSSC
T ss_pred ecCCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEECCCCCcHHHCCCCCCCEEEEEEEcCCCCC
Confidence 356 89999999999999 899999999999 899999999999999999999876 5556543
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.98 E-value=1.8e-13 Score=97.26 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 17 v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 17 VDSDTSILQLKEVVAKQ-QGVPADQLRVIF--AGKELPNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 46789999999999999 899999999999 899999999999999999999986
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.3e-12 Score=99.74 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=52.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++ +..|+
T Consensus 26 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 26 VESSDTIDNVKSKIQDK-EGIPPDQQRLIW--AGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred ECCCCcHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 57899999999999999 899999999999 899999999999999999999876 44444
No 57
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=1.2e-12 Score=98.47 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=49.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.|||++|+++ +|++++||||++ +|+.|+|+ +|++||+++|++|++-
T Consensus 24 v~~~~TV~~lK~~I~~~-tgip~~~QkLi~--~Gk~L~D~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 24 LNTDEPPMVFKAQLFAL-TGVQPARQKVMV--KGGTLKDD-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp EESSSCHHHHHHHHHHH-TCCCTTTSCCEE--TTEECCSS-CCCSCCCCSSCEEECC
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCcCCCCC-CHHHCCCCCCCEEEEE
Confidence 36789999999999999 999999999999 89999999 9999999999999873
No 58
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=5.9e-12 Score=96.20 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=50.5
Q ss_pred CCc-ccHHHHHHHHHHHhC--CCCcCc-eeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 2 SGS-FTVKDIKKEVHKAKS--QLYPDR-QAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 2 ~~~-~TV~~LK~~i~~~~~--~i~~~r-QrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
+++ +||.+||++|+++ . ++++++ |||++ +|+.|+|+++|++||+++|++|++..-
T Consensus 41 ~~~~~TV~~LK~~i~~~-~~~gip~~~~qrLi~--~Gk~L~D~~tL~~y~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 41 SLGGYSISFLKQLIAGK-LQESVPDPELIDLIY--CGRKLKDDQTLDFYGIQPGSTVHVLRK 99 (107)
T ss_dssp CCCCCBHHHHHHHHHHH-CTTTCCCSSSEEEEE--TTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred CcccCCHHHHHHHHHHH-hccCCChhhcEEEEE--CCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 444 9999999999999 7 999999 99999 899999999999999999999998543
No 59
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.28 E-value=3.3e-12 Score=98.71 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=53.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQ 62 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~q 62 (233)
|++++||.+||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++ +-.|+.
T Consensus 52 v~~~~TV~~LK~~I~~~-~gip~~~QrL~~--~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 52 LPLTDQVSVIKVKIHEA-TGMPAGKQKLQY--EGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp ECSCSBTHHHHHHHHHH-SSCCTTTEEEEE--TTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred ECCCCCHHHHHHHHHHH-HCCChHHEEEEE--CCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 46789999999999999 899999999999 899999999999999999999875 455553
No 60
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=3.1e-12 Score=100.70 Aligned_cols=54 Identities=28% Similarity=0.422 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.+||++|+++ .++++++|||+| +|+.|+|+++|++||+++|++|++.
T Consensus 48 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dygI~~gstI~lv 101 (125)
T 1j8c_A 48 VPENSSVQQFKEAISKR-FKSQTDQLVLIF--AGKILKDQDTLIQHGIHDGLTVHLV 101 (125)
T ss_dssp ECTTCCHHHHHHHHHHH-HCSCSSSEEEEE--TTEEESTTSCGGGTTCSSSEEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 46789999999999999 799999999999 8999999999999999999999874
No 61
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.28 E-value=2e-12 Score=97.04 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ .|+|+++|||+| +|+.|+|++||++||+++|++|++
T Consensus 38 v~~~~tv~~lK~~i~~~-~gip~~~qrLif--~Gk~L~d~~tl~dy~i~~g~~I~l 90 (97)
T 1wyw_B 38 VKMTTHLKKLKESYCQR-QGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEV 90 (97)
T ss_dssp EETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCHHHHTCCTTCEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCCChhhEEEEE--CCeEcCCCCCHHHCCCCCCCEEEE
Confidence 45789999999999999 899999999999 899999999999999999999876
No 62
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=5.7e-12 Score=93.29 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=49.9
Q ss_pred cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC-chhhhhcCCCCCceEEEecCCC
Q psy9586 4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d-~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
++||.|||++|+++ .|+|+++|||++ +|+.|+| +++|++||+++|++|++.+-.+
T Consensus 31 ~~TV~~LK~~i~~~-~gip~~~qrL~~--~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 31 EPVVQDLAQVVEEV-IGVPQSFQKLIF--KGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp SCBHHHHHHHHHHH-TCCCTTTCEEEE--TTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred cCcHHHHHHHHHHH-HCcCHHHEEEEE--CCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 59999999999999 899999999999 8999988 5689999999999999866443
No 63
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=2.6e-12 Score=97.79 Aligned_cols=54 Identities=30% Similarity=0.550 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.+||++|+++ .++++++|||++ +|+.|+|+++|++||+++|++|++.
T Consensus 33 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 33 VTDTCTIQQLKEEISQR-FKAHPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp EETTCCHHHHHHHHHHH-HTCCTTTEEEEE--TTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCcCcHHHcCCCCCCEEEEE
Confidence 35789999999999999 799999999999 8999999999999999999999874
No 64
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.24 E-value=5.8e-12 Score=96.89 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=50.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ .++|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 52 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~gI~~gs~I~l 104 (111)
T 3vdz_A 52 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 104 (111)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTTTTTCCTTCEEEE
T ss_pred eCCCCCHHHHHHHHHHH-hCCChHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence 46889999999999999 799999999999 899999999999999999999876
No 65
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.23 E-value=3.2e-12 Score=95.77 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=49.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
|++++||+|||++|+++ .|+|++||||++ +|++|+| ++|++||+++|++|++.+-
T Consensus 33 v~~~~TV~~LK~~I~~~-tgip~~~QrL~~--~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 33 VPLDSTGSELKQKIHSI-TGLPPAMQKVMY--KGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp ECTTSBHHHHHHHHHHH-HCSCSTTCCCBS--SSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 46889999999999999 899999999999 8999954 5999999999999998653
No 66
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.23 E-value=9.3e-12 Score=102.69 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|++++||.+||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++ +-.|+
T Consensus 17 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 17 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (169)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCTTTEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEECCCC-
T ss_pred eCCCCCHHHHHHHHHHH-HCcCHHHEEEEE--CCccccCcCcHHHcCCCCCCEEEEEEEeccc
Confidence 57899999999999999 899999999999 999999999999999999999886 44444
No 67
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.23 E-value=6.6e-12 Score=99.16 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHH-----HHhCCCCc--CceeEEEcCCCcccCCchhhhhcCCCCC------ceEEE
Q psy9586 1 VSGSFTVKDIKKEVH-----KAKSQLYP--DRQAVRLEIKGKILKDSDDIKSLGLKNG------DMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~-----~~~~~i~~--~rQrL~~~~~Gk~L~d~ktL~~ygv~~~------~tl~v 56 (233)
+++++||++||++|+ ++ +++|+ ++|||+| .||+|+|++||+||++++| +|+|+
T Consensus 34 v~psdTV~~lK~kI~~~~p~dk-egiP~~~~qQrLIy--~GK~LeD~~TLsdy~I~~~~~~~~v~tmhl 99 (126)
T 1se9_A 34 FPDATTVSALKETVISEWPREK-ENGPKTVKEVKLIS--AGKVLENSKTVKDYRSPVSNLAGAVTTMHV 99 (126)
T ss_dssp ECTTCBHHHHHHHHHHHSCTTC-SSSCCSGGGEEEEE--TTEECCTTSBGGGGSCCTTSCTTCCEEEEE
T ss_pred cCccCHHHHHHHHHHhhccccc-ccCCCChhhEEEEE--CCeECcCCCcHHHcCCCcCCccCCcEEEEE
Confidence 468999999999994 44 78886 8999999 9999999999999999998 67775
No 68
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.23 E-value=7.9e-12 Score=96.00 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=50.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ .++++++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 52 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~gI~~gs~I~l 104 (111)
T 2ojr_A 52 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 104 (111)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCTTTEEEEE--TTEECCSSCBTTTTTCCTTCEEEE
T ss_pred eCCCCCHHHHHHHHHHH-HCcCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 46789999999999999 799999999999 899999999999999999999986
No 69
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.23 E-value=1.1e-11 Score=90.85 Aligned_cols=60 Identities=13% Similarity=0.313 Sum_probs=52.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC---CchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~---d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
+++++||.|||++|+++ .|++++||||++.-.||+|+ |+++|++||+++|++|++++-..
T Consensus 17 l~~~~Tv~~Lk~~I~~~-~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~~ 79 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAI-TGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQT 79 (86)
T ss_dssp CCTTCBHHHHHHHHHHH-TCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCSC
T ss_pred cCCCCCHHHHHHHHHHH-hCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCCC
Confidence 46889999999999999 89999999999853468874 67899999999999999988754
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.23 E-value=7.7e-12 Score=101.00 Aligned_cols=53 Identities=28% Similarity=0.311 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||++||++|+++ +|+|+++|||++ +|+.|+|+++|++||+++|+||++
T Consensus 98 v~~~~tV~~lK~~i~~~-~gip~~~q~L~~--~G~~L~d~~tL~~y~i~~g~~l~l 150 (159)
T 3rt3_B 98 VRLTQTVAHLKQQVSGL-EGVQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFM 150 (159)
T ss_dssp ECTTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred eCCCCCHHHHHHHHHHH-HCCCHHHEEEEE--CCeecCCCCCHHHcCCCCCCEEEE
Confidence 46899999999999999 899999999999 899999999999999999999986
No 71
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=5.9e-12 Score=95.70 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLG 60 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg 60 (233)
|++++||++||++|+++ +|+||+||||.+-+.|+ |+|+++|++|++++|+||++ .|+.
T Consensus 25 v~~~~TV~~LK~~I~~~-tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 25 LEDTCTVGEIKQILENE-LQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EETTSBHHHHHHHHHHH-HCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ECCCCcHHHHHHHHHHH-HCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 46789999999999999 89999999998544566 99999999999999999986 4544
No 72
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.21 E-value=1.9e-12 Score=99.21 Aligned_cols=53 Identities=28% Similarity=0.413 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcC---------------ceeEEEcCCCcccC-CchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPD---------------RQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~---------------rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~v 56 (233)
|++++||+|||++|+++ .++|++ +|||++ +|++|+ |+++|+|||+++|++|++
T Consensus 24 V~~~~TV~dLK~~I~~~-~~i~~~~q~g~~~isw~~~w~q~~Li~--~Gk~L~dD~~tL~dygI~~g~~l~l 92 (105)
T 1v2y_A 24 VVQNATVLDLKKAIQRY-VQLKQEREGGVQHISWSYVWRTYHLTS--AGEKLTEDRKKLRDYGIRNRDEVSF 92 (105)
T ss_dssp ECTTCBHHHHHHHHHHH-HHHHHHHTTCCCCCCHHHHHTTEEEES--SSCEECCSSSBHHHHTCCSSEEEEE
T ss_pred ECCCChHHHHHHHHHHH-hCCCcccccCcceeeeeecceeEEEEe--CCcCccCCcCCHHHcCCCCCCEEEE
Confidence 57899999999999999 788884 569999 899996 679999999999999986
No 73
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=2e-11 Score=95.09 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCCcccHHHHHHHHHH------HhCCC--CcCceeEEEcCCCcccCCchhhhhcCCCCC--ceEEE
Q psy9586 1 VSGSFTVKDIKKEVHK------AKSQL--YPDRQAVRLEIKGKILKDSDDIKSLGLKNG--DMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~------~~~~i--~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~--~tl~v 56 (233)
|++++||++||++|++ + +++ ++++|||+| .||+|+|+++|++|+++.+ +|||+
T Consensus 33 v~~s~TV~~lK~kI~~~~p~dwk-e~~p~p~~qqrLIy--~GK~LeD~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 33 FSPNDSASDIAKHVYDNWPMDWE-EEQVSSPNILRLIY--QGRFLHGNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp ECTTCBHHHHHHHHHHSSSCCSS-CCCCCCTTTEEEEE--TTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred ECCcCHHHHHHHHHHHhcccccc-cCCCCChHHEEEEE--CCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 4789999999999998 5 675 699999999 9999999999999999766 56775
No 74
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=1.9e-11 Score=90.89 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=49.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|++++||++||++|+++ . +++|||+| +|+.|+|+ ++|++||+++|++||+..-.|
T Consensus 24 v~~~~TV~~LK~~i~~~-~---~~~qrLi~--~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 24 ARPEDTVGTLKSKYFPG-Q---ESQMKLIY--QGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp ECSSSBHHHHHHHHSSS-T---TTTCEEEE--TTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred ECCCCcHHHHHHHHHhh-C---cCcEEEEE--CCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 46889999999999987 4 99999999 89999998 999999999999999866544
No 75
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.16 E-value=3.2e-11 Score=97.32 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEE-EcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~-~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
|++++||++||++|+++ .|+|+++|||+ ++ +|+.|+|+++|++||+++|++|++.-
T Consensus 19 v~~~~tV~~lK~~I~~~-~gip~~~QrL~~~~-~g~~L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 19 LSSSMSVSELKAQITQK-IGVHAFQQRLAVHP-SGVALQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CCTTCCHHHHHHHHHHH-HCCCGGGEEEEEET-TCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred eCCCCcHHHHHHHHHHH-hCCCHHHEEEEEcC-CCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence 57899999999999999 89999999999 72 48999999999999999999998743
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.16 E-value=2.2e-11 Score=102.42 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|++++||++||++|+++ +++|+++|||++ +|+.|+|+++|++||+++|+||++ +-.|+
T Consensus 122 V~~s~TV~~LK~kI~~~-~gIp~~~QrLi~--~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 122 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGCCEEE--TTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred eCCCCcHHHHHHHHHhc-cCCCHHHEEEEE--CCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 47899999999999999 899999999999 899999999999999999999986 44444
No 77
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.15 E-value=1.8e-11 Score=93.56 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=51.2
Q ss_pred CC-CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCc-----------c----cCCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VS-GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-----------I----LKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~-~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk-----------~----L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|+ +++||.|||++|+++ .++|+++|||++ .|+ . ++|+++|++||+++|++||+.+...
T Consensus 23 v~~~~~Tv~~LK~kI~~~-~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 23 VDGPHITVSQLKTLIQDQ-LQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGE 96 (107)
T ss_dssp ECCTTSBHHHHHHHHHHH-SCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSC
T ss_pred ECCCCCcHHHHHHHHHHH-hCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 35 889999999999999 899999999998 455 4 5888999999999999999988754
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.15 E-value=3e-11 Score=95.91 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+++++||++||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++
T Consensus 93 v~~~~tv~~lK~~i~~~-~gi~~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 93 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 145 (152)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred eCCCCcHHHHHHHHHHH-hCcChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEE
Confidence 46789999999999999 799999999999 899999999999999999999986
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=99.67 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+||++|+++ +|+|+++|||++ +|+.|+|+++|++||+++|+||++
T Consensus 113 v~~~~tV~~lK~~I~~~-~gip~~~q~L~~--~g~~L~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 113 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGCCEEE--TTEECCTTSBSGGGTCCTTCEEEE
T ss_pred ecCCCCHHHHHHHHHHH-hCCCceeEEEEE--CCccCCCCCcHHHhCCCCCCEEEE
Confidence 46789999999999999 899999999999 899999999999999999999987
No 80
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=99.02 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.+||++|+++ .|+|+++|||.+ +|+.|+|+++|++||+++|+||++.
T Consensus 37 v~~~~tV~~lK~~I~~~-~gip~~~QrL~~--~g~~L~d~~tL~~~~i~~~~~l~l~ 90 (172)
T 3u30_A 37 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV 90 (172)
T ss_dssp ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcChHHEEEEE--CCccccccCCHhHcCCcccceeeee
Confidence 47899999999999999 899999999999 8999999999999999999999864
No 81
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.14 E-value=4.4e-11 Score=94.99 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=52.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
|++++||+|||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|++|++..-
T Consensus 17 v~~~~tv~~lK~~i~~~-~gip~~~q~L~~--~g~~L~d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred ECCCCCHHHHHHHHHHH-HCcChHHeEEEE--CCeECcCcccHHHhccCCCCeeEEEee
Confidence 57899999999999999 799999999999 899999999999999999999987543
No 82
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=96.05 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCCcccHHHHHHHHHH------HhCCC--CcCceeEEEcCCCcccCCchhhhhcCCCCCc--eEEE
Q psy9586 1 VSGSFTVKDIKKEVHK------AKSQL--YPDRQAVRLEIKGKILKDSDDIKSLGLKNGD--MVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~------~~~~i--~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~--tl~v 56 (233)
|++++||++||++|++ + +++ ++++|||+| .||+|+|+++|++|++++|+ |+++
T Consensus 34 v~~s~TV~~lK~~I~~~~p~dwk-e~ip~~~~~qrLIy--~GK~LeD~~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 34 FSPNDSASDIAKHVYDNWPMDWE-EEQVSSPNILRLIY--QGRFLHGNVTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp ECTTSBHHHHHHHHHSSCCCSCC-CCTTCCGGGEEEES--SSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred eCCccHHHHHHHHHHHHCCcccc-cCCCCChHHEEEEE--CCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 4789999999999998 5 788 489999999 99999999999999999765 5654
No 83
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.13 E-value=5e-12 Score=102.86 Aligned_cols=53 Identities=21% Similarity=0.430 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||+|||++|+++ .|+|+++|||++ +|+.|+|+++|++||+++|+||++
T Consensus 17 V~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dygI~~gstL~L 69 (152)
T 3u5c_f 17 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp --------------------------------------------------------
T ss_pred ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEEccccCcHHHcCCCCCCEEEE
Confidence 57899999999999999 899999999999 899999999999999999999875
No 84
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.92 E-value=2.9e-10 Score=102.61 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=48.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|++++||.+||++|+++ +|+||+||||++. -+|++|+|+.+|++||+++|++|++-
T Consensus 21 v~~~~Tv~~lK~~I~~~-tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 21 LTDQDTVEVLRHEIFRK-TQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77 (320)
T ss_dssp EETTSBHHHHHHHHHHH-HCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred ECCCCcHHHHHHHHHHH-HCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence 46889999999999999 8999999999921 18999999999999999999999874
No 85
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.91 E-value=1.5e-09 Score=81.18 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=51.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCC--C--cc-c-CCchhhhhcCCCCCceEEEecCCCcc
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK--G--KI-L-KDSDDIKSLGLKNGDMVFIKDLGPQI 63 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~--G--k~-L-~d~ktL~~ygv~~~~tl~vkdlg~qi 63 (233)
+++.||.+||++|++. .|+|+++|||.+.++ + .. | +|+++|.+||+++|++|++.|..|.-
T Consensus 30 ~~~~TV~~LK~~i~~~-~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p~s 96 (97)
T 1wjn_A 30 PDSMTVQKVKGLLSRL-LKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS 96 (97)
T ss_dssp ETTSBHHHHHHHHHTT-TTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred CCCCCHHHHHHHHHHH-HCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCCCC
Confidence 4678999999999999 799999999998532 2 22 5 57789999999999999999987753
No 86
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.90 E-value=1.1e-09 Score=100.44 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=48.2
Q ss_pred CCCcccHHHHHHHHHHH--hCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceE
Q psy9586 1 VSGSFTVKDIKKEVHKA--KSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~--~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl 54 (233)
|++++||.+||++|+++ .+|+++++|||+| +||.|+|+++|++|||++|++|
T Consensus 24 V~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~L~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 24 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSEECSSSBTTTTCCCTTSCE
T ss_pred eCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCeecCCcCCHHHcCCCCCCEE
Confidence 57889999999999994 2689999999999 8999999999999999999998
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.74 E-value=1e-09 Score=92.12 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=0.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCcc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQI 63 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~qi 63 (233)
|++++||++||++|+++ +|+|+++|||+| +|++|+|+++|+ +++||++ +-+|+..
T Consensus 17 V~~sdTV~~LK~kI~~k-eGIP~~qQRLIf--~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 17 LEQGTSVLDLKSQISQD-MGFEIDMMTLVN--NGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ---------------------------------------------------------------CC
T ss_pred ECCcChHHHHHHHHHHH-hCcChhHEEEEe--cCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 57899999999999999 999999999999 899999999998 8888875 4445433
No 88
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=98.74 E-value=1.2e-08 Score=85.71 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=71.3
Q ss_pred hhHhhhhHHHHHHHHhc-CCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHH-HHHHHHHHH
Q psy9586 127 VFCQLGNLSIHLALRDL-RPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLF-ASAGMYQMT 204 (233)
Q Consensus 127 ~~~~~~n~~~h~~L~~L-R~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f-~~~~~~~m~ 204 (233)
++|......++.+|.+- +..-+ ...++..-.+|+|+++.+|||++|++.|+|++++++++.++++ .+....-+.
T Consensus 86 l~G~~l~~~a~~~Lg~~f~~~~~----~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~~~~~~~ 161 (194)
T 4a2n_B 86 FLNIGLFTKIHKDLGNNWSAILE----IKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYF 161 (194)
T ss_dssp HHHHHHHHHHHHHHGGGCCSSCC----EETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccCCC----CCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 47777888888888543 32111 1123344458999999999999999999999999998776553 222222334
Q ss_pred HHHHHHhHHHHhhCCC----CCCCceeeecccC
Q psy9586 205 VWALGKHKNYKKEFPD----YPKQRKAIVPFVI 233 (233)
Q Consensus 205 ~~A~~~h~wY~~~F~~----yp~~RkaiIPfi~ 233 (233)
.++..-+++.+++|++ |.++.+++||+|.
T Consensus 162 ~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 162 IRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 6777788888888863 6666679999974
No 89
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.71 E-value=9.3e-09 Score=76.96 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|.++++++.|+++++++ .|+++++|||+| +|+.|++++|.+++++++|++|++ +-.|+
T Consensus 24 v~~~t~l~kl~~~y~~~-~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 24 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred ECCCCHHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 35789999999999999 899999999999 899999999999999999999875 44444
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.68 E-value=1.7e-08 Score=71.61 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|.++++++.|+++++++ .|+++++|||+| +|+.|++++|.+++++++|++|++.
T Consensus 18 v~~~t~l~kl~~~y~~~-~gi~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 18 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp ECTTSCTHHHHHHHHHH-HTCCTTTCEEEE--TTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred ECCCChHHHHHHHHHHH-hCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 45789999999999999 899999999999 8999999999999999999999863
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.64 E-value=3e-08 Score=71.71 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=50.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
|.+++++..|+++++++ .|+++++|||+| +|+.|++++|.+++++++|++|++.
T Consensus 25 i~~~t~l~kl~~~y~~~-~gi~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 25 LSPDSPLKVLMSHYEEA-MGLSGHKLSFFF--DGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp ECTTSCHHHHHHHHHHH-HTCTTCCCEEEE--TTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred ECCCChHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35789999999999999 899999999999 8999999999999999999999873
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.59 E-value=4.8e-08 Score=72.71 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|.+++++..|+++++++ .|+++++|||+| +|+.|++++|.+++++++|++|.+
T Consensus 22 vk~~t~l~kl~~~y~~~-~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv 74 (91)
T 2io0_B 22 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDV 74 (91)
T ss_dssp EETTSCTHHHHHHHHHH-TTCCSTTEEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred ECCCChHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence 35789999999999999 899999999999 899999999999999999999865
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.45 E-value=1.3e-07 Score=70.40 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.+++++..|+++++++ .|+++++|||+| +|+.|.+++|.+++++++|++|++
T Consensus 35 ~~~t~l~kl~~~y~~~-~gi~~~~~rf~f--dG~~l~~~~Tp~dl~medgD~Idv 86 (93)
T 2d07_B 35 KRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDV 86 (93)
T ss_dssp ETTSCHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred ccCCHHHHHHHHHHHH-hCCCccceEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence 4688999999999999 899999999999 899999999999999999999876
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.40 E-value=1.9e-07 Score=71.11 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=49.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|.+++++..|+++++++ .|+++++|||+| +|+.|.+++|.+++++++|++|++
T Consensus 41 Vk~~t~l~kL~~~y~ek-~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv 93 (104)
T 1wz0_A 41 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDV 93 (104)
T ss_dssp ECTTSCHHHHHHHHHHH-HTCCTTTSCEES--SSSBCCTTSCTTTTTCCTTEEEEE
T ss_pred EcCCChHHHHHHHHHHH-hCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence 45789999999999999 899999999999 899999999999999999999876
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.40 E-value=1.8e-07 Score=72.03 Aligned_cols=53 Identities=11% Similarity=0.255 Sum_probs=49.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|.+++++..|+++++++ .|+++++|||+| +|+.|++++|.+++++++|++|.+
T Consensus 43 Vk~~t~l~kL~~ay~ek-~gi~~~~~rfiF--dG~~L~~~~Tp~dl~mEDgD~Idv 95 (110)
T 2k8h_A 43 IKSRTALKKLIDTYCKK-QGISRNSVRFLF--DGTPIDETKTPEELGMEDDDVIDA 95 (110)
T ss_dssp ECTTSSHHHHHHHHHHH-HTCCSSSCEEES--SSCBCCSSSHHHHHHCSSEEEEEE
T ss_pred ECCCChHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence 45789999999999999 899999999999 899999999999999999999876
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.32 E-value=3.6e-07 Score=69.91 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=48.9
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.+++++..|+++++++ .|+++++|||+| +|+.|.+++|.+++++++|++|.+
T Consensus 48 k~tt~l~kL~~ay~ek-~gi~~~~~rF~F--dG~rl~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 48 KKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp ETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred CCCCHHHHHHHHHHHH-hCCCcccEEEEE--CCeEcCCCCCHHHcCCCCCCEEEE
Confidence 4688999999999999 899999999999 899999999999999999999876
No 97
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.96 E-value=6.5e-06 Score=59.56 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=45.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCC-ccc--CCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G-k~L--~d~ktL~~ygv~~~~tl~vk 57 (233)
+++++|+.|||++|+++ .+++++.|.+.+.... +.| .++.+|+++|++.|++|++.
T Consensus 20 v~~~~t~~~L~~~I~~~-~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 20 ATKRETAATFLKKVAKE-FGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCSSCCHHHHHHHHHHH-TCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cCCcChHHHHHHHHHHH-cCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 57899999999999999 6899999988764222 234 36779999999999999875
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.77 E-value=2.1e-05 Score=60.85 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=48.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
..++++..|+++++++ .|++++++|+.| +|+.|.+++|.+++++++|++|.+
T Consensus 58 k~tt~L~KLm~aY~er-~Gl~~~~irFlF--DG~rI~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 58 KMTTHLKKLKESYCQR-QGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp ETTSCTHHHHHHHHHH-HTCCTTSEEEEE--TTEECCTTCCTTTTTCCTTCEEEE
T ss_pred ccCChHHHHHHHHHHH-hCCChhhEEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence 4678999999999999 799999999999 899999999999999999999875
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.73 E-value=2.3e-05 Score=66.19 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|.+++++..|+++++++ .|++++++|+.| +|+.|.+++|.+++++++|++|.+ .-.|+
T Consensus 45 Ik~~t~l~kL~~ay~er-~Gi~~~~~RF~F--dG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 45 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp ECTTSCTHHHHHHHHHH-HSSCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred EecCCHHHHHHHHHHHH-hCCChhhEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 35788999999999999 899999999999 899999999999999999999864 44444
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.60 E-value=4.7e-05 Score=63.94 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=51.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
.+++++..|++++.++ .|++++++|+.| +|+.|.+++|.++++++||++|.+ .-.|+
T Consensus 74 KrtTpL~KLmeAYcER-qGL~~~sIRFLF--DGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 74 KKTTPLRRLMEAFAKR-QGKEMDSLTFLY--DGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp ETTSCTHHHHHHHHHH-TTCCGGGSCEEE--TTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred ccCChHHHHHHHHHHH-hCCCcccEEEEE--CCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4678999999999999 899999999999 899999999999999999999865 44454
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.55 E-value=5.2e-05 Score=56.66 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=40.3
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc--CCchhhhhcCCCCC-ceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--KDSDDIKSLGLKNG-DMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L--~d~ktL~~ygv~~~-~tl~vkd 58 (233)
+.++.||.++|++|+++ +||+|++|||++ +|+.| +.++.-+.|.-+.. +-|.+-+
T Consensus 30 I~~~etv~~~ke~V~eq-TgIp~~~Q~LL~--eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 30 IHSYNTATIFHELVYKQ-TKIISSNQELIY--EGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EETTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred eccchHHHHHHHHHHHH-hCCCHHHHHHHh--CCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 35789999999999999 999999999999 78766 44444555554333 3354433
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.53 E-value=0.00012 Score=52.85 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=48.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcC-ceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~-rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|++++||.+|-++.-++ .+|+++ +.||.| +|..|+.+.+++||+++||+.|-+
T Consensus 26 I~~~t~v~kLi~ayc~~-~~I~~~~~IrllF--DGdRLdp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 26 IPVDFTVKDLIKRYCTE-VKISFHERIRLEF--EGEWLDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EETTSBHHHHHHHHHHH-HTCCCCTTCEEEE--TTEECCTTSBGGGSSCCTTCEEEE
T ss_pred ecCCCCHHHHHHHHHHH-cCCCcCceEEEEE--cCcccCccCChhhhCCcCCceeee
Confidence 35789999999998888 799999 999999 899999999999999999998854
No 103
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.21 E-value=5.1e-05 Score=64.54 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|..++++..|+++++++ .|++++++|+.| +|+.+.+++|-++++++||++|.+
T Consensus 37 IKrtTpL~KLM~AYcER-qGLs~~siRFLF--DGqRI~dddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 37 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------
T ss_pred EccCChHHHHHHHHHHH-hCCCccceEEEE--CCEecCCCCCHHHcCCCCCCEEEE
Confidence 35678899999999999 899999999999 899999999999999999999864
No 104
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.95 E-value=0.00029 Score=55.42 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcC-------------------------------------ceeEEEcCCCcccCCchhh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPD-------------------------------------RQAVRLEIKGKILKDSDDI 43 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~-------------------------------------rQrL~~~~~Gk~L~d~ktL 43 (233)
|+.+.||.+++..|.++ -||+.. +|+|..++++..|+++++|
T Consensus 28 VD~S~~V~~lv~~Ic~k-igI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~srtL 106 (128)
T 2kc2_A 28 VDDSKTVTDMLMTICAR-IGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTL 106 (128)
T ss_dssp EEECSSHHHHHHHHHHH-HTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECSSSCH
T ss_pred eCCCcCHHHHHHHHHHH-hCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccCCCcH
Confidence 46788999999999998 677744 7777666667899999999
Q ss_pred hhcCCCCCceEEEe
Q psy9586 44 KSLGLKNGDMVFIK 57 (233)
Q Consensus 44 ~~ygv~~~~tl~vk 57 (233)
.++||.+++||.++
T Consensus 107 ~EQGI~e~~tllLR 120 (128)
T 2kc2_A 107 REQGVEEHETLLLR 120 (128)
T ss_dssp HHHTCCTTSEEEEE
T ss_pred HHcCCCCCCEEEEE
Confidence 99999999998775
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.70 E-value=0.0024 Score=47.77 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
..+++...|.++.+++ .|++++.-|+.| +|..|.+++|-++++++||++|.+
T Consensus 44 k~~t~l~kLm~aY~~~-~g~~~~~vrF~F--DG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 44 SRDSPLKTLMSHYEEA-MGLSGRKLSFFF--DGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp ETTSCHHHHHHHHHHH-TTCSSSCCEEEE--TTEECCSCSCHHHHTCCTTEEEEE
T ss_pred CCCChHHHHHHHHHHH-HCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence 3578899999999998 899999999999 899999999999999999999865
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.34 E-value=0.0026 Score=53.60 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=49.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
..+++..-|+++.+++ .|++++++|+.| +|+.+.+++|-++++.+|+++|.+ +-.|+
T Consensus 38 ~~~~~l~kl~~~y~~~-~g~~~~~~~f~f--dG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 38 KKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp ETTSCTHHHHHHHHHH-HTCCGGGCEEEE--TTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred eeCCHHHHHHHHHHHh-hCCChheEEEEE--CCEeccCCCChHHhhhcccccchhhcccccc
Confidence 4578899999999999 899999999999 899999999999999999998754 44443
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.29 E-value=0.00066 Score=61.91 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|..+++...|+++++++ .|++++++|+.| +|+.|.+++|.++++++||++|.+
T Consensus 37 Ik~~t~l~kLm~aY~~r-~G~~~~~~rFlF--dG~rI~~~~TP~~L~MEDgD~Idv 89 (360)
T 3ix6_A 37 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEA 89 (360)
T ss_dssp --------------------------------------------------------
T ss_pred EecCChHHHHHHHHHHH-hCCCcceEEEEE--CCeECCCCCChHHcCCCccchhhh
Confidence 35678899999999999 899999999999 899999999999999999999854
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.43 E-value=0.0025 Score=58.05 Aligned_cols=58 Identities=10% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
|..+++...|++..+++ .|++++++|+.| +|+.|.+++|-+++|+++|++|.+ +-.|+
T Consensus 46 i~~~~~~~~l~~~y~~~-~g~~~~~~~f~f--~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 46 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ---------------------------------------------------------------
T ss_pred ECCCChHHHHHHHHHHH-hCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 35678899999999999 899999999999 899999999999999999998753 44443
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.33 E-value=0.014 Score=42.23 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=42.0
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCc---eeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDR---QAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~r---QrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
|...||++|++.+.+. -+++..+ =.+....+|..|+++++|+||++++|+.+.+
T Consensus 24 P~~~tvK~Li~~l~ea-~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 24 SDYHPVKKVIDIAWQA-QSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp ETTSBTTHHHHHHHHH-SCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred CCchhHHHHHHHHHHH-hCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4567999999999888 4565421 2455555788899999999999999998865
No 110
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=94.55 E-value=0.058 Score=40.06 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=46.7
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
.++..+-|.+..+++ .|+++++.|+.| +|..+.++.|=+++|+++|++|-+--+
T Consensus 39 ~tt~l~KL~~aYc~r-~gv~~~sirFlf--DG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 39 MSEPLQSVVDHMATH-LGVSPSRILLLF--GETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp SSSCTHHHHHHHHHH-HTSCGGGEEEEE--TTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred cCChHHHHHHHHHhh-cCCChhhEEEEE--CCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 355667788888888 899999999999 899999999999999999999866433
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.00 E-value=0.16 Score=36.07 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc---CCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL---KDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L---~d~ktL~~ygv~~~~tl~vk 57 (233)
+.++||.+|.+-+... +.++...+|.-.--.|.| +.++||+|.|+.++++|++.
T Consensus 25 ~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 25 LASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp ETTSBHHHHHHHHHHT--TCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCCCCHHHHHHHHHHc--CCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 3578999999999874 566777777642124667 34679999999999999875
No 112
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.61 E-value=0.13 Score=46.18 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=44.6
Q ss_pred CCcccHHHHHHHHHHHhCC---CCcCceeEEE----cCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 2 SGSFTVKDIKKEVHKAKSQ---LYPDRQAVRL----EIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~---i~~~rQrL~~----~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
++++||.|+-..|-++.++ -+++.=.|.. +.+|+.|+++++|+.|++++|+.+..+
T Consensus 20 ~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 20 EPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp CTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 6899999999999887442 2456668887 346788999999999999999877653
No 113
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.75 E-value=0.18 Score=36.70 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
|+|..++.++--.|=++ ..++|+.--|.-+ ..+..|+=+++|.|||+++ +|.+|-..
T Consensus 27 VSP~vpL~ellp~IC~K-cefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 27 VSPHASLQELAPIICSK-CEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp ECSSSCTTTHHHHHHHH-TTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred eCCCCcHHHHHHHHhhc-ccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 57888999999999999 5699988877644 3578899999999999984 88888643
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=91.29 E-value=0.4 Score=35.98 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=44.2
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC--C-chhhhhcCCCCCceEEEecCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--D-SDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~--d-~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
+.++||.||.+-+... .+.+...-.|.-.--.|.++ | ++||+|.|+.+.++|+++....
T Consensus 31 ~~~~tl~~v~~fV~~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~~ 92 (109)
T 2dzk_A 31 PSDAPLEEARQFAAQT-VGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAGR 92 (109)
T ss_dssp CTTSBHHHHHHHHHHH-HTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCSS
T ss_pred CCCCCHHHHHHHHHhc-cCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECcC
Confidence 4678999999999887 55555556665422355665 3 6799999999999999988754
No 115
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=91.28 E-value=0.29 Score=37.31 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHH-hCCCCcCc------eeEEEc--CCCcccCCc-------------hhhhhcCCCCCceEEEe
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYPDR------QAVRLE--IKGKILKDS-------------DDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~~r------QrL~~~--~~Gk~L~d~-------------ktL~~ygv~~~~tl~vk 57 (233)
-+||.++|++|-+. |.|.|-++ ..|-.- ..|+.|.|. .||++|+|.||+|+-+.
T Consensus 33 CDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 33 CDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGATLILS 108 (111)
T ss_dssp TCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCEEEEE
T ss_pred cCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCEEEEE
Confidence 47999999998875 44555432 234332 245556442 27999999999999763
No 116
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=90.70 E-value=0.11 Score=46.17 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=24.9
Q ss_pred EEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 29 RLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 29 ~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
++--+|+.|+|+++|++||+++|++|++.
T Consensus 275 RLi~~Gk~L~D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 275 RLIFAGKQLEDGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp EEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEeCCeecCCCCCHHHcCCCCCCEEEEE
Confidence 33347999999999999999999999874
No 117
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=90.35 E-value=0.45 Score=37.54 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHH-hCCCCcCc------eeEEE--cCCCc-ccCCc-------------hhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYPDR------QAVRL--EIKGK-ILKDS-------------DDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~~r------QrL~~--~~~Gk-~L~d~-------------ktL~~ygv~~~~tl~v 56 (233)
-+||.++|++|-+. |.+.|-++ --|-. ...|+ .|.|. .||+.|+|.||++|-+
T Consensus 50 CDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~l 125 (138)
T 2r2o_A 50 CDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVAL 125 (138)
T ss_dssp TCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEEE
T ss_pred cccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEEE
Confidence 47999999998875 55554332 12221 11233 24332 2899999999999875
No 118
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=87.97 E-value=0.92 Score=37.93 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=43.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCcC-ceeEEE-c--CCCcccCC-chhhhhcCCCCCceEEE--ecCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPD-RQAVRL-E--IKGKILKD-SDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~-rQrL~~-~--~~Gk~L~d-~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
+..+||.+|++++-+. -+++++ .-||.. . .+...|+| ++||+|+++.+|.+|.+ ++-.+
T Consensus 147 Sk~~ti~~l~~~~~~~-~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 147 SKADTIDTIEKEIRKI-FSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp CTTSBHHHHHHHHHHH-TTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred cccchHHHHHHHHHHH-hCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 5678999999999998 689987 478863 2 23356666 56999999999998765 54433
No 119
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=87.95 E-value=1.5 Score=32.08 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCcccHHHH-HHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586 1 VSGSFTVKDI-KKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59 (233)
Q Consensus 1 v~~~~TV~~L-K~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl 59 (233)
|.|++|+.|+ ++..++ -|+++++=.|.+ ++|.||-+-.+.-.|+-+|+++.+.-.
T Consensus 26 vtp~t~L~~VL~eaC~K--~gl~~~~~~Lkh--~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 26 VTPSTVLLQVLEDTCRR--QDFNPSEYDLKF--QRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCTTSBHHHHHHHHHHH--TTCCGGGCEEEE--TTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred ECCCCCHHHHHHHHHHH--hCCChhhCeEEe--CCEeccccceeEecCCCCCCEEEEEEc
Confidence 5788999995 555555 489998888888 789998888899999999999987543
No 120
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.08 E-value=1.5 Score=37.03 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=44.7
Q ss_pred CCcccHHHHHHHHHHHhCCCCcC-ceeEEEc-C--CCcccCC-chhhhhcCCCCCceEEE--ecCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPD-RQAVRLE-I--KGKILKD-SDDIKSLGLKNGDMVFI--KDLGP 61 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~-rQrL~~~-~--~Gk~L~d-~ktL~~ygv~~~~tl~v--kdlg~ 61 (233)
+..+||.+|++.+-+. -+++++ .-||..- . +...|+| +++|+|+++.++.+|.+ +|-.+
T Consensus 159 Sk~~ti~~l~~~~~~~-~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 159 SKADTIATIEKEMRKL-FNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp CTTCBHHHHHHHHHHH-TTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred cccCcHHHHHHHHHHH-hCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4678999999999998 689997 4788752 1 3456765 57999999999998765 44433
No 121
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=87.02 E-value=0.45 Score=36.98 Aligned_cols=28 Identities=4% Similarity=0.039 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRL 30 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~ 30 (233)
..++|+.++|+++++. -|+|+++|||..
T Consensus 63 ~k~~~~~~~~~~va~~-lg~~~~~~RlW~ 90 (130)
T 2kvr_A 63 LKNSSLAEFVQSLSQT-MGFPQDQIRLWP 90 (130)
T ss_dssp CTTSBHHHHHHHHHHH-HCCCGGGCEEEE
T ss_pred eccCcHHHHHHHHHHH-hCCCcccEEEEE
Confidence 4578999999999998 599999999986
No 122
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=86.47 E-value=0.95 Score=34.74 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc--C-CchhhhhcCCCCCceEEEecCCCc
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--K-DSDDIKSLGLKNGDMVFIKDLGPQ 62 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L--~-d~ktL~~ygv~~~~tl~vkdlg~q 62 (233)
.++||.+|.+-|... +.++..-.|.-.--.|.| + .+++|+|.|+....+|+|..+.+.
T Consensus 62 ~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d~~ 122 (124)
T 1wj4_A 62 EQAKLLALVKHVQSK--GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESGPS 122 (124)
T ss_dssp TTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECCST
T ss_pred CCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEccCC
Confidence 578999999999775 566666677643235667 3 368999999999999999887653
No 123
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=86.18 E-value=1.4 Score=32.69 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=43.5
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEc----------CCCcccCC------chhhhhcCCCCCceEEEecCCCccc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE----------IKGKILKD------SDDIKSLGLKNGDMVFIKDLGPQIG 64 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~----------~~Gk~L~d------~ktL~~ygv~~~~tl~vkdlg~qi~ 64 (233)
|+++.|.+|+-+.+.+. +.+...+=.|+.. ...++|++ +++|.|+|+++|.+|+|.|-.-..+
T Consensus 11 v~~~~TL~~lid~L~~~-p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~~p~~ 89 (98)
T 1y8x_B 11 FSPSAKLQEVLDYLTNS-ASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQT 89 (98)
T ss_dssp CCTTCBHHHHHHHHHHC-TTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTCSSC
T ss_pred ECCchhHHHHHHHHHhC-hHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCCCccc
Confidence 57889999999999886 5444333334331 12234543 3578999999999999998765544
Q ss_pred h
Q psy9586 65 W 65 (233)
Q Consensus 65 w 65 (233)
.
T Consensus 90 ~ 90 (98)
T 1y8x_B 90 V 90 (98)
T ss_dssp E
T ss_pred E
Confidence 4
No 124
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=85.36 E-value=0.73 Score=35.84 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHH-hCCCCc------CceeEEEc--CCCcc-cCCc-------------hhhhhcCCCCCceEEEe
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYP------DRQAVRLE--IKGKI-LKDS-------------DDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~------~rQrL~~~--~~Gk~-L~d~-------------ktL~~ygv~~~~tl~vk 57 (233)
-+||.++|++|-+. |.+.|- +...|-.- ..|+. |.|. .||++|+|.||+|+-+.
T Consensus 26 CDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~ 102 (127)
T 3h6n_A 26 TDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMS 102 (127)
T ss_dssp TSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEE
T ss_pred cCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCEEEEE
Confidence 47999999998875 445543 33344332 12332 4331 28999999999999764
No 125
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=85.04 E-value=0.72 Score=35.86 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHHHhCCC----CcC---ceeEEEcCCCcccCC--chhhhhcCCCCCceEEEecCCC
Q psy9586 4 SFTVKDIKKEVHKAKSQL----YPD---RQAVRLEIKGKILKD--SDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i----~~~---rQrL~~~~~Gk~L~d--~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
.+|..+|-+.+.+++ |. +.. .|||.+++ -.+| +++|+++|+++|+.|.+.|=..
T Consensus 19 ~~TL~dLV~~l~~~~-gy~~eiSV~~~~~~rLLyD~---DfDDnl~k~L~dLgv~~gsfLtv~DEdd 81 (127)
T 3onh_A 19 KMKLSDFVVLIREKY-SYPQDISLLDASNQRLLFDY---DFEDLNDRTLSEINLGNGSIILFSDEEG 81 (127)
T ss_dssp HCBHHHHHHHHHHHH-TCCSSEEEEETTTTEEEEET---TBCTTTTSBTTTTTCCTTCEEEEEESCC
T ss_pred ccCHHHHHHHHHHhc-CCCCcEEEEecCCCCeEeCC---CccccccCcHHHcCcCCCcEEEEEcccc
Confidence 468888777777663 43 323 46777742 2333 5799999999999999987544
No 126
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=83.63 E-value=3 Score=30.98 Aligned_cols=56 Identities=7% Similarity=0.140 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC--CchhhhhcCCCCCceEEEecCC
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--DSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~--d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.++||.+|.+-+..+ +..+..-+|.-.--.|.|. .++||+|.|+.+..+|+|.++.
T Consensus 42 ~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 42 KSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp SSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred CCCCHHHHHHHHHhc--CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 578999999999875 4555666665321245665 4679999999999999998764
No 127
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=83.47 E-value=2 Score=32.93 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC-chhhhhcCCCCCceE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDIKSLGLKNGDMV 54 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d-~ktL~~ygv~~~~tl 54 (233)
+.++||.||.+-|....++.......|.-.--.|.|+| ++||+|.|+.+...|
T Consensus 70 ~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 70 NHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 46889999999998863344455566764323577765 689999999985444
No 128
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=83.01 E-value=2.5 Score=32.37 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHH-hCCCCcCc------eeEEEc--CCCc-ccCC---------c----hhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYPDR------QAVRLE--IKGK-ILKD---------S----DDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~~r------QrL~~~--~~Gk-~L~d---------~----ktL~~ygv~~~~tl~v 56 (233)
-+||.++|++|-+. |.+.|-++ ..|-.- ..|+ .|.| + .||++|+|.||+++-+
T Consensus 36 CDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l 111 (117)
T 4e74_A 36 CDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVAL 111 (117)
T ss_dssp TSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEE
T ss_pred CCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEE
Confidence 47999999998775 45555432 234332 1233 2433 1 2899999999999865
No 129
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=77.40 E-value=2.8 Score=29.50 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCcccHHHHHHHHHHHhCCCCc---C-------ceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYP---D-------RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~---~-------rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+..+||.||.+++.++++++.. + .-++.. +|+..++ +.-+++|++|.+
T Consensus 25 ~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~V--N~~~v~~-----~~~l~~gDeV~i 82 (89)
T 3po0_A 25 DGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLR--NGEAAAL-----GEATAAGDELAL 82 (89)
T ss_dssp CTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEE--TTEECCT-----TSBCCTTCEEEE
T ss_pred CCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEE--CCEECCC-----CcccCCCCEEEE
Confidence 4568999999999988544311 0 123333 5655543 456788888865
No 130
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=74.90 E-value=4.1 Score=31.53 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHH-h--CCCCcC----ceeEE---------E-cCCCc--ccCCc----hhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKA-K--SQLYPD----RQAVR---------L-EIKGK--ILKDS----DDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~--~~i~~~----rQrL~---------~-~~~Gk--~L~d~----ktL~~ygv~~~~tl~v 56 (233)
-+||.++|++|-+. | .+.|-+ ...|- + +.+.. .++++ .||+.|+|.||+++-+
T Consensus 48 CDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatlal 123 (126)
T 3kuz_A 48 CDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKV 123 (126)
T ss_dssp TCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCCEEEE
Confidence 47999999998775 2 355432 12222 2 21221 12332 2789999999999865
No 131
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=74.73 E-value=4.4 Score=31.02 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=39.5
Q ss_pred CCCcccHHHHHHHHHHH-------hCCCCcCceeEEEcCCCccc--CCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKA-------KSQLYPDRQAVRLEIKGKIL--KDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~-------~~~i~~~rQrL~~~~~Gk~L--~d~ktL~~ygv~~~~tl~vkd 58 (233)
+++++|-.+|-+++-.- +.+|+-++-...+ +|+.. +.+++|+|.|+.-.+.|.++-
T Consensus 44 ~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l--~g~pftPD~~kSLaenG~~HKs~lrf~T 108 (119)
T 3u52_E 44 VQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLL--NDEPFTPKADASLKEQGIDHKSMLTVTT 108 (119)
T ss_dssp ECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEE--TTEEECCCTTSBTTTTTCCTTEEEEEEC
T ss_pred CCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEE--CCccCCCChhhhHHHcCCCchheEEEeC
Confidence 46777877776664432 3345555555556 78877 457899999999999998863
No 132
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=73.76 E-value=4.8 Score=29.02 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=30.3
Q ss_pred CCcccHHHHHHHHHHHhCCCCc----------CceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYP----------DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~----------~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++.+||.||.+.+..+++++.. .+..+.. +|+..+. +.-+++|++|.+
T Consensus 34 ~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~V--Ng~~v~~-----~~~L~dGDeV~i 91 (98)
T 1vjk_A 34 PEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAV--NGRYVSW-----DEELKDGDVVGV 91 (98)
T ss_dssp CTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEE--TTBCCCT-----TCBCCTTCEEEE
T ss_pred CCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEE--CCEECCC-----CCCCCCCCEEEE
Confidence 3567999999999887543321 1122333 5655542 556889998866
No 133
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=72.29 E-value=4.5 Score=39.20 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHH-hCCCCcCc------eeEEEc--CCCc-ccCCc-------------hhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYPDR------QAVRLE--IKGK-ILKDS-------------DDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~~r------QrL~~~--~~Gk-~L~d~-------------ktL~~ygv~~~~tl~v 56 (233)
-+||.++|++|-+. |.|.|-++ ..|-.- ..|+ .|.|. .||++|+|.||++|-+
T Consensus 283 CDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~v~L 358 (644)
T 3hm6_X 283 CDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVAL 358 (644)
T ss_dssp TSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEE
T ss_pred cCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCCcEEEE
Confidence 47999999998864 55655443 233321 1232 24331 2899999999999976
No 134
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.60 E-value=14 Score=26.92 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.+.+||+++..++ -+++.+--+|.++.+|..++|++-++.+. +++.+.+-.-|
T Consensus 28 ~sL~EL~~K~~~~-l~l~~~~~~lvLeeDGT~VddEeyF~tLp--~nT~lmvL~~g 80 (91)
T 2eel_A 28 SSLQELISKTLDA-LVIATGLVTLVLEEDGTVVDTEEFFQTLG--DNTHFMILEKG 80 (91)
T ss_dssp SSHHHHHHHHHHH-TTCSSSCEEEEETTTCCBCCCHHHHTTSC--SSEEEEEEETT
T ss_pred CCHHHHHHHHHHH-hcCCCCCcEEEEeeCCcEEechhhhhhCC--CCCEEEEEcCC
Confidence 4788999888787 46765667888888999999988665543 55555554333
No 135
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=70.13 E-value=2.4 Score=39.21 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=31.8
Q ss_pred CCcccHHHHHHHHHHHhCC--CC---cC-----ceeEEEcCCCcccCC------chhhhhcCCCCCceEEEec--CCCcc
Q psy9586 2 SGSFTVKDIKKEVHKAKSQ--LY---PD-----RQAVRLEIKGKILKD------SDDIKSLGLKNGDMVFIKD--LGPQI 63 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~--i~---~~-----rQrL~~~~~Gk~L~d------~ktL~~ygv~~~~tl~vkd--lg~qi 63 (233)
+.+.|+.++-+.+.++ .+ +. .+ ..++.|....+.|++ +++|+|+|+++|+.|.+.| +...+
T Consensus 348 ~~~~tl~~~~~~l~~~-~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~d~~~~~~~ 426 (434)
T 1tt5_B 348 SPSAKLQEVLDYLTNS-ASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTV 426 (434)
T ss_dssp -----CTTHHHHHHHC-SSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECCCTTCSSCC
T ss_pred CCCccHHHHHHHHhcc-CccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEECCCCcccE
Confidence 3456766777777665 22 21 11 145666544344432 4689999999999999998 44444
Q ss_pred chh
Q psy9586 64 GWS 66 (233)
Q Consensus 64 ~w~ 66 (233)
..+
T Consensus 427 ~~~ 429 (434)
T 1tt5_B 427 LFK 429 (434)
T ss_dssp EEC
T ss_pred EEE
Confidence 433
No 136
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=69.13 E-value=4.9 Score=29.05 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=32.0
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEE-Ec-CCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVR-LE-IKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~-~~-~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
...+|.|||.+|.++ .++-...--|. ++ ..|+..+|+..+ |-.+++|.++.++
T Consensus 27 ~~Isv~dLKr~I~~~-~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVrRvP 81 (86)
T 2c7h_A 27 LHISLCDLKKQIMGR-EKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVRRIP 81 (86)
T ss_dssp SEEEHHHHHHHHHHH-HTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEEEEE
T ss_pred CEEEHHHHHHHHHHH-hCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEEecc
Confidence 456899999999998 56644333343 32 345555555433 4455666666543
No 137
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=68.12 E-value=6.4 Score=38.06 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHH-hCCCCc------CceeEEEc--CCCc-ccCCc-------------hhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKA-KSQLYP------DRQAVRLE--IKGK-ILKDS-------------DDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~-~~~i~~------~rQrL~~~--~~Gk-~L~d~-------------ktL~~ygv~~~~tl~v 56 (233)
-+||.++|++|-+. |.+.|- +...|-.- ..|+ .|.|+ .||++|+|.||++|-+
T Consensus 256 CDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dga~v~L 331 (627)
T 3ig3_A 256 CDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDGSLVAL 331 (627)
T ss_dssp TCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEE
T ss_pred cCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCCceEEE
Confidence 57999999998875 445543 23333321 1232 23331 2899999999999976
No 138
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=66.87 E-value=6.9 Score=26.47 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCce--eEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQ--AVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQ--rL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++..||.||.+++..+++.+ ++. .+.. +|+..+.+ ..+++|++|.+
T Consensus 23 ~~~~tv~~ll~~l~~~~p~~--~~v~~~v~v--Ng~~v~~~-----~~L~~gD~V~i 70 (77)
T 2q5w_D 23 EQALTVQQFEDLLFERYPQI--NNKKFQVAV--NEEFVQKS-----DFIQPNDTVAL 70 (77)
T ss_dssp SSCEEHHHHHHHHHHHCGGG--TTCCCEEEE--TTEEECTT-----SEECTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHCcch--hcceEEEEE--CCEECCCC-----CCcCCCCEEEE
Confidence 45679999999998874322 233 4445 78776543 45788888765
No 139
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=66.61 E-value=6 Score=28.59 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl 54 (233)
+.++..||+.++.+ -+++-+-=.+.+ ...+|+++++|-|-+|+-...+
T Consensus 12 ~epL~~Lk~LLe~R-l~i~L~~y~f~L--Qd~~L~~~k~LvdQcVqgeGlV 59 (89)
T 2juo_A 12 NEPIGNLKKLLEPR-LQCSLDAHEICL--QDIQLDPDRSLFDQGVKTDGTV 59 (89)
T ss_dssp SSBGGGHHHHSHHH-HCSCCSSCEEEE--TTEECCTTSBTTTSSCCCCSEE
T ss_pred cCcHHHHHHHHHHH-hcCCcccCeEEe--eccccCCCccHHHhhcccccEE
Confidence 45788899999999 688888777877 6677999999999999766654
No 140
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=65.91 E-value=7.5 Score=27.83 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC---CCcccCCchhhh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI---KGKILKDSDDIK 44 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~---~Gk~L~d~ktL~ 44 (233)
|+++.+..+|.++|.++ -+++++.-.|.|.+ ++.++..++.|+
T Consensus 20 vp~~~~y~~L~~~l~~k-L~l~~~~~~LsYk~~~s~~~vi~~d~dl~ 65 (83)
T 1oey_A 20 TQPGLPYSQVRDMVSKK-LELRLEHTKLSYRPRDSNELVPLSEDSMK 65 (83)
T ss_dssp ECTTCCHHHHHHHHHHH-TTCCGGGCCEEECCTTCSSCEECCTTTHH
T ss_pred CCCCCCHHHHHHHHHHH-hCCCcceeEEEeeCCCCCCeeccChHHHH
Confidence 46788999999999999 68999999999953 223344444443
No 141
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=65.60 E-value=2.8 Score=39.66 Aligned_cols=27 Identities=4% Similarity=0.067 Sum_probs=24.5
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRL 30 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~ 30 (233)
.++|+.++|+++++. -|++++||||+.
T Consensus 44 k~~~~~~l~~~va~~-lg~~~~~~RlW~ 70 (530)
T 2ylm_A 44 KNSSLAEFVQSLSQT-MGFPQDQIRLWP 70 (530)
T ss_dssp TTSBHHHHHHHHHHH-HTSCGGGEEEEE
T ss_pred CcCCHHHHHHHHHHH-hCcCcccEEEEE
Confidence 578999999999998 589999999975
No 142
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=65.56 E-value=5.7 Score=27.03 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.+||.||.+++..+ +++....++....-+|+.+.+ .+.-+++|++|.+
T Consensus 20 ~~tv~~ll~~L~~~-~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i 67 (74)
T 3rpf_C 20 ANDLKELRAILQEK-EGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISL 67 (74)
T ss_dssp CSSHHHHHHHHHTC-TTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEE
T ss_pred CCcHHHHHHHHHHC-cCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEE
Confidence 47999999999876 555432222222226766433 2446888988865
No 143
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=65.38 E-value=8.7 Score=37.43 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhh
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKS 45 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ 45 (233)
+.++.|+.+++..|++. .|++++.|-++++ .|-.++.++..++
T Consensus 328 i~~~~tl~~l~~~i~~~-T~i~~~~q~~~~~-~~~~~~p~~~~~~ 370 (676)
T 3qa8_A 328 VTENENLQNLKSWLQQD-TGIPEEEQELLQA-SGLALNSAQPLTQ 370 (676)
T ss_dssp CCTTCCHHHHHHHHHTT-SCCCSTTCEEESS-SSCCCCTTSCGGG
T ss_pred cCCCccHHHHHHHHHHH-hCCCHHHHHHHhc-cCCCCCCCcchhh
Confidence 45788999999999999 8999999999985 5666665544443
No 144
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=59.93 E-value=20 Score=24.07 Aligned_cols=43 Identities=21% Similarity=0.430 Sum_probs=29.5
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+...||.||.+++ ++++++-.... +|+.++.+. -+++|++|.+
T Consensus 21 ~~~~tv~~Ll~~l-----~~~~~~v~vav--N~~~v~~~~-----~L~~gD~V~i 63 (70)
T 1ryj_A 21 GAPRRIKDVLGEL-----EIPIETVVVKK--NGQIVIDEE-----EIFDGDIIEV 63 (70)
T ss_dssp SSCCBHHHHHHHT-----TCCTTTEEEEE--TTEECCTTS-----BCCTTCEEEE
T ss_pred CCCCcHHHHHHHh-----CCCCCCEEEEE--CCEECCCcc-----cCCCCCEEEE
Confidence 3457999998764 45555555555 888886554 5788888765
No 145
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=57.65 E-value=7.6 Score=34.13 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCC
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLK 49 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~ 49 (233)
.++.|+.+++++++++ .+++++.|.|.++..+-.++-++.-++++-+
T Consensus 329 ~~~~~~~~~~~~~~~~-t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 329 HSYNTATIFHELVYKQ-TKIISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp CTTCBHHHHHHHHHHH-HCCCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred CchhHHHHHHHHHHHh-cCCChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 4677999999999999 8999999999984323333444445555443
No 146
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=56.17 E-value=7.4 Score=27.06 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=30.1
Q ss_pred CcccHHHHHHHHHHHhCCCCc----------CceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYP----------DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~----------~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
...||.||.+.+..+++++.. ++..+.. +|+..+..+ -.+.-+++|++|.+
T Consensus 23 ~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~v--N~~~v~~~~-~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 23 GISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILV--NGNNITSMK-GLDTEIKDDDKIDL 83 (90)
T ss_dssp SCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEE--SSSBGGGTC-SSSCBCCTTCEEEE
T ss_pred CCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEE--CCEEccccC-CCCcCCCCCCEEEE
Confidence 457999999999887432211 2223334 666553211 13446889998876
No 147
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=55.37 E-value=27 Score=24.86 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=31.3
Q ss_pred CCc-ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGS-FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~-~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++. .||.||.+++ ++++++-.+.. +|+.+..+ ...+.-+++|++|.+
T Consensus 33 ~~~~~Tv~dLL~~L-----~~~~~~vaVav--Ng~iV~~~-~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 33 KKDTGTIQDLLASY-----QLENKIVIVER--NKEIIGKE-RYHEVELCDRDVIEI 80 (87)
T ss_dssp SSSCCBHHHHHHHT-----TCTTSCCEEEE--TTEEECGG-GTTTSBCCSSSEEEE
T ss_pred CCCCCcHHHHHHHh-----CCCCCCEEEEE--CCEECChh-hcCCcCCCCCCEEEE
Confidence 344 7999988764 45555555555 78777543 355567889998865
No 148
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=54.47 E-value=12 Score=25.70 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++.+||.||.+++ ++++++..+.. +|+..+.+ .-+++|++|.+
T Consensus 28 ~~~~Tv~dLl~~L-----~~~~~~v~Vav--Ng~~v~~~-----~~L~dGD~V~i 70 (77)
T 1rws_A 28 REGMKVRDILRAV-----GFNTESAIAKV--NGKVVLED-----DEVKDGDFVEV 70 (77)
T ss_dssp CSSCCHHHHHHTT-----TCSSCSSCEEE--TTEEECSS-----SCCCSSCCCBC
T ss_pred CCCCcHHHHHHHh-----CCCCcCEEEEE--CCEECCCC-----CCcCCCCEEEE
Confidence 4567999987664 45555555666 78777654 45677777643
No 149
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=52.85 E-value=13 Score=36.37 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=40.3
Q ss_pred CCcccHHHHHHHHHHHhCC--CCc---Cc-----eeEEEcCCCcccC----C--chhhhhcCCCCCceEEEec--CCCcc
Q psy9586 2 SGSFTVKDIKKEVHKAKSQ--LYP---DR-----QAVRLEIKGKILK----D--SDDIKSLGLKNGDMVFIKD--LGPQI 63 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~--i~~---~r-----QrL~~~~~Gk~L~----d--~ktL~~ygv~~~~tl~vkd--lg~qi 63 (233)
+.+.|+.++-+.+.++ .+ +.. +. .++.|....+.|+ + +++|+++|+++|+.|.+.| +...+
T Consensus 719 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 797 (805)
T 2nvu_B 719 SPSAKLQEVLDYLTNS-ASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTV 797 (805)
T ss_dssp CTTSBHHHHHHHHHHC-TTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEECTTSSSCE
T ss_pred CCcChHHHHHHHHHhh-hccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEcCCCCeeE
Confidence 4567888888888776 33 221 11 4666643333322 2 4689999999999999998 44333
Q ss_pred ch
Q psy9586 64 GW 65 (233)
Q Consensus 64 ~w 65 (233)
..
T Consensus 798 ~~ 799 (805)
T 2nvu_B 798 LF 799 (805)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 150
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=51.06 E-value=10 Score=25.74 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=29.0
Q ss_pred CcccHHHHHHHHHHHhCCC----CcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQL----YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i----~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+..||.||.+.+.++++++ +..+-.+.. +|+.... +..+++|++|.+
T Consensus 24 ~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~v--N~~~v~~-----~~~l~~gD~V~i 74 (81)
T 1fm0_D 24 DFPTVEALRQHMAAQSDRWALALEDGKLLAAV--NQTLVSF-----DHPLTDGDEVAF 74 (81)
T ss_dssp CCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEE--TTEECCT-----TCBCCTTCEEEE
T ss_pred CCCCHHHHHHHHHHHChhHHHHhcCCCEEEEE--CCEECCC-----CCCCCCCCEEEE
Confidence 4579999999987663221 112223444 6765542 446788998866
No 151
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=49.79 E-value=15 Score=27.34 Aligned_cols=49 Identities=10% Similarity=0.287 Sum_probs=28.3
Q ss_pred hCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCCccchhhhhhH
Q psy9586 18 KSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMA 71 (233)
Q Consensus 18 ~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~qi~w~~vf~~ 71 (233)
|....-+--|+ ++..|.+|.++.-. ..++..+--.+-|+++||+.-|.+
T Consensus 44 y~~y~~~~lrI-~D~~G~vi~~~~~~----a~~~~~vLa~~g~n~lGW~Ley~l 92 (106)
T 3fn2_A 44 YRYYGRGYVRI-TDKDGQVITYEDGS----VQDKTVFLTNEGANKLGWKLEFLI 92 (106)
T ss_dssp HSSTTTCEEEE-ECTTSCBCSCCCSC----STTEEEEEEECSCCTTCCEEEEEE
T ss_pred HhhhcCCcEEE-EcCCCCEEecCCCC----cCcceeehhhcCCCccceEEEEEe
Confidence 33333344444 57788887543211 122334555788999999976665
No 152
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=47.95 E-value=30 Score=22.72 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+..+||.||.+++ ++++++-.+.. +|+.+..+ ...+.-+++|++|.+
T Consensus 13 ~~~~tv~~ll~~l-----~~~~~~v~vav--N~~~v~~~-~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 13 AAGQTVHELLEQL-----DQRQAGAALAI--NQQIVPRE-QWAQHIVQDGDQILL 59 (66)
T ss_dssp CTTCCHHHHHHHH-----TCCCSSEEEEE--TTEEECHH-HHTTCCCCTTEEECE
T ss_pred CCCCcHHHHHHHc-----CCCCCCEEEEE--CCEECCch-hcCCcCCCCCCEEEE
Confidence 4567999998876 34445555555 78776532 244556888888754
No 153
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=46.29 E-value=43 Score=24.71 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHHhCCCCcC--ceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPD--RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~--rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.+.+||+++..++ -+++.+ --+|.+..+|..++|++=++.+ .+++.+.+---|
T Consensus 37 ~SL~EL~~K~~~~-l~l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~nT~lmvL~~g 91 (100)
T 1f2r_I 37 SSLEELRSKACEL-LAIDKSLTPITLVLAEDGTIVDDDDYFLCL--PSNTKFVALACN 91 (100)
T ss_dssp SSHHHHHHHHHHH-HCCCGGGCSCEEEESSSCCBCCSSSSSSSS--CSCCEEEEECSS
T ss_pred CCHHHHHHHHHHH-hccCCCCCceEEEEeeCCcEEechhHhhcC--CCCCEEEEEcCC
Confidence 4789999998777 367653 4688888899999888755443 355555554433
No 154
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=45.15 E-value=37 Score=23.08 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
+..||+||-++ .++++++-.... +|+.+..+ ..++.-+++|+.|.+..
T Consensus 13 ~~~Tl~~LL~~-----l~~~~~~vAV~v--Ng~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMTE-----LDCTGGHFAVAL--NYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHHH-----TTCCSSSCEEEE--SSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHHH-----cCCCCCcEEEEE--CCEECChH-HcCcccCCCCCEEEEEc
Confidence 35688888654 367777776666 88877533 46667788999887643
No 155
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=44.22 E-value=33 Score=23.46 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
+++.+||+||-++ -+++++.--... +|+.+..++ +.+|++|.+.
T Consensus 17 v~~g~Tv~dLL~~-----Lgl~~~~VvV~v--NG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 17 VDDDGTYADLVRA-----VDLSPHEVTVLV--DGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CSTTCSHHHHHHT-----TCCCSSCCCEEC--CCCCCCTTS------SSCCCCEEEC
T ss_pred cCCCCcHHHHHHH-----cCCCcceEEEEE--CCEECCHHH------CCCCCEEEEE
Confidence 3567888887544 478887774444 888886554 2347777653
No 156
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=43.26 E-value=29 Score=24.02 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=32.7
Q ss_pred CcccHHHHHHHHHHHhCCCC-cCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586 3 GSFTVKDIKKEVHKAKSQLY-PDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~-~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk 57 (233)
...||+||-+++ +++ +.+-.... +|+.+..+ ..++.-+++|+.|.+.
T Consensus 16 ~~~Tl~~LL~~l-----~~~~~~~vAVav--Ng~iVpr~-~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 16 ESLNVTELLSAL-----KVAQAEYVTVEL--NGEVLERE-AFDATTVKDGDAVEFL 63 (78)
T ss_dssp SCEEHHHHHHHH-----TCSCTTTCCEEE--TTEECCTT-HHHHCEECSSBCEEEC
T ss_pred CCCcHHHHHHHc-----CCCCCCcEEEEE--CCEECChH-HcCcccCCCCCEEEEE
Confidence 457899987653 566 66666666 88877644 4666678888888653
No 157
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=42.92 E-value=27 Score=25.08 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=32.1
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCceeEEE---cCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRL---EIKGKILKDSDDIKSLGLKNGDMVFIKD 58 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~---~~~Gk~L~d~ktL~~ygv~~~~tl~vkd 58 (233)
|+++.+..|||.+|.++ -++ +.+.+.. ++.|..+.++..|+. -++..+.|.+-|
T Consensus 28 vP~di~~~~L~dKi~~R-Lk~--~~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l~~ 84 (85)
T 1ip9_A 28 LKGDTTYKELRSKIAPR-IDT--DNFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISVHD 84 (85)
T ss_dssp ECSCCCHHHHHHHHHHH-HTS--SCEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHH-hcc--cceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEEec
Confidence 47889999999999998 344 4444433 245666665554432 234444444433
No 158
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=42.41 E-value=58 Score=25.61 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHhCCCCc--CceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYP--DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~--~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~ 61 (233)
.+.+||+++..++ -+++. .--+|.+..+|..++|++=++.+. +++.+.+.--|-
T Consensus 82 ~SL~EL~~K~~~k-L~l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~nT~LmvL~~ge 137 (145)
T 1ibx_B 82 SCLEDLRSKACDI-LAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP--SNTKFVALASNE 137 (145)
T ss_dssp SSHHHHHHHHHHH-HTCSCTTSCCEEEETTTCCBCSSHHHHHHSC--SSCBEEEECSSC
T ss_pred CCHHHHHHHHHHH-hcCCCCccccEEEEeeCCcEEechhHhhcCC--CCCEEEEECCCC
Confidence 5789999988777 35754 467899988999999988665543 555555544443
No 159
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=37.57 E-value=26 Score=26.86 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg 60 (233)
.+.+||+++..++. ++ .+--+|.++.+|..++|++=.+.+. +++.+.+-.-|
T Consensus 54 ~SL~EL~~K~~~~l-~l-~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~g 105 (122)
T 1d4b_A 54 ATRQELLAKALETL-LL-NGVLTLVLEEDGTAVDSEDFFQLLE--DDTCLMVLQSG 105 (122)
T ss_dssp CCSSTHHHHHHHHH-SC-CSSCEEEETTTTEEECSTHHHHHSS--SCCCCCEECSS
T ss_pred CCHHHHHHHHHHHh-cc-CCCcEEEEEeCCcEEechhHhhcCC--CCCEEEEecCC
Confidence 46789998887773 56 3455888888999999988655543 55555444333
No 160
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=36.81 E-value=15 Score=27.43 Aligned_cols=48 Identities=10% Similarity=0.250 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCCc------ccCCch---hh--hhcCCCCCceEEE
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK------ILKDSD---DI--KSLGLKNGDMVFI 56 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk------~L~d~k---tL--~~ygv~~~~tl~v 56 (233)
+||.||-+.+.+++ +..+.+|.. ++|+ ++-|++ -+ .++.+++|++|.+
T Consensus 43 ~TV~~Ll~~L~~~~---~~~~~~lf~-~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 43 WDIRNLLVWIKKNL---LKERPELFI-QGDSVRPGILVLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp CBHHHHHHHHTTTT---CCSCHHHHC-CSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred CCHHHHHHHHHHHc---cchhHhhCc-cCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEE
Confidence 69999999988774 444666643 2342 333443 23 3677999999876
No 161
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=36.23 E-value=93 Score=21.49 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHhCCCCc---C---------ceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYP---D---------RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~---~---------rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
.+||.||.+.+.++++++.. + .-++.. +|+..++.+- .+.-+++|++|.+
T Consensus 25 ~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~V--N~~~v~~~~~-~~~~L~~gDeV~i 86 (93)
T 3dwg_C 25 GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYV--NDEDVRFSGG-LATAIADGDSVTI 86 (93)
T ss_dssp CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEE--TTEEGGGTTG-GGCBCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEE--CCEEccCcCC-CCcCCCCCCEEEE
Confidence 47999999999988654321 0 122333 5554443211 2456899998865
No 162
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=35.71 E-value=46 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCcccHHHHHHHH--HHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 2 SGSFTVKDIKKEV--HKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 2 ~~~~TV~~LK~~i--~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
++.+||+|+=++. .++++.++.+...+-. +|+..+ .+.-+++|+.|.+
T Consensus 33 ~~g~TV~daI~~~gi~~~~peIdl~~~~V~V--ng~~v~-----~d~~L~dGDRVEI 82 (97)
T 2hj1_A 33 DEGITVQTAITQSGILSQFPEIDLSTNKIGI--FSRPIK-----LTDVLKEGDRIEI 82 (97)
T ss_dssp ETTCBHHHHHHHHTHHHHCTTCCTTTSEEEE--EECSCC-----TTCBCCTTCEEEE
T ss_pred CCCCcHHHHHHHcCCCccCCcccccccEEEE--cCEECC-----CCccCCCCCEEEE
Confidence 4668999977664 3444556665666655 577766 3334677877654
No 163
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=34.70 E-value=54 Score=23.37 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHHhCCCCcC---------ce-------eEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 4 SFTVKDIKKEVHKAKSQLYPD---------RQ-------AVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~~---------rQ-------rL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
..||.||.+.+..+++++... +. .+.. +|+..+..+ -.+.-+++|++|.+
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~V--Ng~~v~~~~-~~~~~L~~gD~V~i 92 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILI--NGNNIRHLE-GLETLLKDSDEIGI 92 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEE--TTSCGGGTT-STTSCCCTTEEEEE
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEE--CCEEccccC-CCCCCCCCCCEEEE
Confidence 479999999998875433221 11 2333 555442211 12446889998866
No 164
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=34.45 E-value=13 Score=20.32 Aligned_cols=10 Identities=50% Similarity=1.394 Sum_probs=8.0
Q ss_pred ecccchhhHH
Q psy9586 168 VSCPNYTYEF 177 (233)
Q Consensus 168 VscPnY~~Ei 177 (233)
|.|||+..|.
T Consensus 1 vqcphfcyel 10 (26)
T 1rpq_W 1 VQCPHFCYEL 10 (26)
T ss_dssp CCCCTHHHHS
T ss_pred CCCCeeeeec
Confidence 5799998874
No 165
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=32.29 E-value=29 Score=24.76 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeE--EEcCCCc------ccCCch---hh--hhcCCCCCceEEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAV--RLEIKGK------ILKDSD---DI--KSLGLKNGDMVFI 56 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL--~~~~~Gk------~L~d~k---tL--~~ygv~~~~tl~v 56 (233)
+.+||.||.+.+.+++++. +.++ .. ++|+ .+-|++ .+ .+.-+++|++|-+
T Consensus 30 ~~~Tv~~L~~~L~~~~~~~---~~~l~~~~-~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 30 DPVTVGDLIDHIVSTMINN---PNDVSIFI-EDDSIRPGIITLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp SCCBHHHHHHHHHHHTCSS---GGGHHHHE-ETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred CCCcHHHHHHHHHHHCchh---hHHHhhhc-cCCccccCeEEEECCEEccccCCCCcCcCCCCEEEE
Confidence 4579999999999885432 2222 11 1221 223333 22 3567899999866
No 166
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=31.93 E-value=68 Score=20.78 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=29.0
Q ss_pred CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+..||.||.+.+ ++++++-.+.. +|+.++.+ ...+.-+++|++|.+
T Consensus 12 ~~~tv~~ll~~l-----~~~~~~v~vav--N~~~v~~~-~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 12 EGKTLKEVLEEM-----GVELKGVAVLL--NEEAFLGL-EVPDRPLRDGDVVEV 57 (64)
T ss_dssp TTCCHHHHHHHH-----TBCGGGEEEEE--TTEEEEGG-GCCCCCCCTTCEEEE
T ss_pred CCCcHHHHHHHc-----CCCCCcEEEEE--CCEECCcc-ccCCcCCCCCCEEEE
Confidence 457899988776 34444444445 78776532 234456788888765
No 167
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=30.51 E-value=48 Score=23.09 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCC-----cCceeEEEcC-CC
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLY-----PDRQAVRLEI-KG 34 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~-----~~rQrL~~~~-~G 34 (233)
|+++.+-.+|..+|.++. +.. ..+-+|.|.+ +|
T Consensus 8 V~~~i~f~~L~~kI~~kl-~~~~~~~~~~~~~lkYkDEdG 46 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKI-SNTHNNNISPITKIKYQDEDG 46 (77)
T ss_dssp CTTCCCSHHHHHHHHHHT-TTTTSSCSCSTTCCEEEETTT
T ss_pred eCCCCCHHHHHHHHHHHH-cccccccccceeEEEEEcCCC
Confidence 578899999999999994 443 3556777754 56
No 168
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.35 E-value=60 Score=25.76 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=29.4
Q ss_pred ccHHHHHHHHHHHhCCCCc---------CceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586 5 FTVKDIKKEVHKAKSQLYP---------DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~---------~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v 56 (233)
+||.||.+.+..+++++.. .+-.+.. +|+..++.+ -.+..+++|++|.+
T Consensus 23 ~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaV--Ng~~v~~~~-~~dt~L~dGDeVai 80 (168)
T 1v8c_A 23 ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFL--EGRDVRYLQ-GLSTPLSPGATLDL 80 (168)
T ss_dssp SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEE--TTEEGGGTT-GGGCBCCTTCEEEE
T ss_pred CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEE--CCEECCCcC-CCccCCCCCCEEEE
Confidence 7999999999887543321 1122233 555544321 12456899998876
No 169
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=28.26 E-value=1.3e+02 Score=21.30 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCC----cC-ceeEEEcCCC--cccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLY----PD-RQAVRLEIKG--KILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~----~~-rQrL~~~~~G--k~L~d~ktL~~ygv~~~~tl~v 56 (233)
|+.++|.+++-++++...-|.- |. --|... +| +.+..+.|+.+-|++.-..|.+
T Consensus 19 VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~--~G~~~~~pr~~tvae~gl~P~e~vev 79 (83)
T 2inc_C 19 VDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRR--HEDGTLFPRGMIVSDAGLRPTETLDI 79 (83)
T ss_dssp ECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEE--TTTCCEECTTCBGGGSCCCTTCEEEE
T ss_pred ecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEe--cCCccCCCCCCEeeccCCCCceEEEE
Confidence 4678899999999887522321 22 234445 55 8889999999999988776543
No 170
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=27.81 E-value=1.2e+02 Score=21.58 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=38.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCC----cCceeEEEcCCCcc--cCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLY----PDRQAVRLEIKGKI--LKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~----~~rQrL~~~~~Gk~--L~d~ktL~~ygv~~~~tl~v 56 (233)
|+.++|.+++-++.+...-|.- |.--|... .|.. |.++-|+.|-|++.-..|.+
T Consensus 21 VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~--~G~~~~~Pr~mtVaeaGl~Pme~vev 80 (84)
T 3ge3_C 21 VDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRK--HRSTELFPRDMTIAESGLNPTEVIDV 80 (84)
T ss_dssp EETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEE--TTCSCBCCTTCBHHHHCCCTTCEEEE
T ss_pred ecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEE--CCCcccCCCCCEeeccCCCcceEEEE
Confidence 4678899999999887633432 12234444 6766 89999999999998877754
No 171
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=27.22 E-value=18 Score=25.22 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=11.3
Q ss_pred hhcCCCCCceEEE-ec
Q psy9586 44 KSLGLKNGDMVFI-KD 58 (233)
Q Consensus 44 ~~ygv~~~~tl~v-kd 58 (233)
+.+.++||+|||+ ||
T Consensus 8 k~v~LkDGstvyiFKD 23 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKD 23 (74)
T ss_dssp EEEEBTTSCEEEEETT
T ss_pred eeEecCCCcEEEEEcC
Confidence 4567899999985 55
No 172
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=23.32 E-value=1.7e+02 Score=20.81 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCcccHHHHHHHHHHHhCCCCcCc-eeEEE-cCCCc
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLYPDR-QAVRL-EIKGK 35 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~~~r-QrL~~-~~~Gk 35 (233)
++++.+.++|.+++.+. -++..++ -.+.+ |++|.
T Consensus 22 v~~~i~~~~L~~kv~~~-~~~~~~~~f~lky~DEeGD 57 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDM-CSFDNEQLFTMKWIDEEGD 57 (89)
T ss_dssp ECTTCCHHHHHHHHHHH-TTCCSSCCEEEEECCSSSC
T ss_pred CCCCCCHHHHHHHHHHH-hCCCCCCeEEEEEECCCCC
Confidence 46788999999999999 4665444 45555 34464
No 173
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=22.84 E-value=1.3e+02 Score=28.19 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCC---cCceeEEEcCCCc---ccCCchhhhhcCCCCCceEEE
Q psy9586 1 VSGSFTVKDIKKEVHKAKSQLY---PDRQAVRLEIKGK---ILKDSDDIKSLGLKNGDMVFI 56 (233)
Q Consensus 1 v~~~~TV~~LK~~i~~~~~~i~---~~rQrL~~~~~Gk---~L~d~ktL~~ygv~~~~tl~v 56 (233)
++.+.||.||-++++++ -+++ ..+.|+.--.++| .++++++|.+.+=+...++++
T Consensus 358 vpK~gtV~Dll~~l~k~-~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 358 PDKHGCVRDLLEECKKA-VELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp CBTTCBHHHHHHHHHTT-CCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred cCCCCCHHHHHHHHHHh-cCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 46789999999999988 6776 3455664223554 456677776543322445554
No 174
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=22.52 E-value=55 Score=20.93 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHHhCCCC
Q psy9586 4 SFTVKDIKKEVHKAKSQLY 22 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~ 22 (233)
..||.|||+.+.++ |++
T Consensus 12 klkV~eLK~eLk~R--gL~ 28 (50)
T 1zrj_A 12 RLKVNELREELQRR--GLD 28 (50)
T ss_dssp GSCHHHHHHHHHHT--TCC
T ss_pred HCcHHHHHHHHHHc--CCC
Confidence 56999999999886 554
No 175
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=22.01 E-value=57 Score=20.94 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.2
Q ss_pred cccHHHHHHHHHHHhCCCCc
Q psy9586 4 SFTVKDIKKEVHKAKSQLYP 23 (233)
Q Consensus 4 ~~TV~~LK~~i~~~~~~i~~ 23 (233)
..||.|||+.+.++ |++.
T Consensus 7 kltV~eLK~~Lk~R--GL~~ 24 (51)
T 1h1j_S 7 SLTVVQLKDLLTKR--NLSV 24 (51)
T ss_dssp GCCHHHHHHHHHHT--TCCC
T ss_pred HCcHHHHHHHHHHc--CCCC
Confidence 56999999999886 6643
No 176
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=21.29 E-value=34 Score=25.35 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHhCCCCcCceeEEEcCCC--c------ccCCchhh-----hhcCCCCCceEEE
Q psy9586 5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKG--K------ILKDSDDI-----KSLGLKNGDMVFI 56 (233)
Q Consensus 5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G--k------~L~d~ktL-----~~ygv~~~~tl~v 56 (233)
+||.||=+.+.++ ++..|.+|.. ++| + +|-|++.. .++.+++|++|.+
T Consensus 35 ~TV~dLl~~L~~~---~~~~r~~lf~-~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 35 TNLNGLVQLLKTN---YVKERPDLLV-DQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp CCHHHHHHHHTTT---TCCSCHHHHB-CSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred ccHHHHHHHHHHH---ccccchhhEe-cCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEE
Confidence 4899988777665 4455777753 234 2 35454433 2577999999876
No 177
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.35 E-value=53 Score=20.08 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=11.0
Q ss_pred cccHHHHHHHHHHH
Q psy9586 4 SFTVKDIKKEVHKA 17 (233)
Q Consensus 4 ~~TV~~LK~~i~~~ 17 (233)
+.||.+||+-|++.
T Consensus 2 sntvkelknyiqel 15 (46)
T 3he4_B 2 SNTVKELKNYIQEL 15 (46)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 46899999988875
Done!