RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9586
(233 letters)
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 40.0 bits (93), Expect = 2e-05
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQA-VRLEIKGKILKDSDDIKSLGLKNGD---MVFI 56
+S TV D+K+ + + + P+RQ + L++KGK ++ + +L LK M+
Sbjct: 24 LSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82
Query: 57 KDLGPQIG 64
++ GP G
Sbjct: 83 RESGPSSG 90
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 37.8 bits (88), Expect = 6e-05
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
V+ TV K+ ++K + + Q RL GKILKD ++S +++G V
Sbjct: 17 VAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 67
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 38.4 bits (89), Expect = 9e-05
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK--------ILKDSDDIKSLGLKNGD 52
+ S TV+ +K + + ++ L + + D ++ ++NGD
Sbjct: 29 LPDSMTVQKVKGLLSR-LLKVPVSEL--LLSYESSKMPGREIELENDLQPLQFYSVENGD 85
Query: 53 MVFIKDLGPQIG 64
+ ++ GP G
Sbjct: 86 CLLVRWSGPSSG 97
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 35.6 bits (82), Expect = 6e-04
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
G +++ +K+ + + PD + + L G+ LKD + G++ G V
Sbjct: 34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTV 87
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.6 bits (82), Expect = 7e-04
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 1 VSGSFTVKDIKKEVH-KAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD 52
++V +K + + P+ Q RL GK+L D ++ L K
Sbjct: 26 GDRGWSVGHLKAHLSRVYPERPRPEDQ--RLIYSGKLLLDHQCLRDLLPKQEK 76
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 34.8 bits (80), Expect = 9e-04
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56
+ TVK +K+++ K + +L GKIL D I+ + + V +
Sbjct: 19 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVV 74
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.5 bits (76), Expect = 0.004
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
+ TVK +K+++ K + +L GKIL D +K + + V
Sbjct: 17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV 70
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 31.7 bits (72), Expect = 0.011
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKN 50
V VK+ K+ + + ++Q RL +G++L+D ++ +
Sbjct: 17 VGAQMNVKEFKEHIAA-SVSIPSEKQ--RLIYQGRVLQDDKKLQEYNVGG 63
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 31.8 bits (72), Expect = 0.018
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 1 VSGSFTVKDIKKEV------HKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDM 53
+ TV +K+ V K +L GK+L++S +K ++
Sbjct: 25 FPDATTVSALKETVISEWPREKENGPKTVKEV--KLISAGKVLENSKTVKDYRSPVSNL 81
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 32.7 bits (74), Expect = 0.022
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 182 SFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKK 216
S L+ P LLF +AGM LG K K
Sbjct: 25 SAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYK 59
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 31.1 bits (70), Expect = 0.029
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
++ K ++ ++ + +KG LKD DD ++ +KNG V
Sbjct: 24 LNTDEPPMVFKAQLFALTGVQPARQK---VMVKGGTLKD-DDWGNIKMKNGMTV 73
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal
domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 27.8 bits (62), Expect = 0.38
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 24 DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK 57
D V L + L L GD V +K
Sbjct: 15 DNSVVSL--------SQPKMDELQLFRGDTVLLK 40
>d1tmoa1 b.52.2.2 (A:632-798) Trimethylamine N-oxide reductase
{Shewanella massilia [TaxId: 76854]}
Length = 167
Score = 28.5 bits (63), Expect = 0.45
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 25 RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK-DLGPQIGWSTVFMAEYAGPLFVYLIF 83
R+ + + + D K+ G+K+GD+V + D G + + V G + ++
Sbjct: 36 RETYAVNGREPVYISPVDAKARGIKDGDIVRVFNDRGQLLAGAVVSDNFPKGIVRIHEGA 95
Query: 84 YYRPWIFYGSE 94
+Y P GS
Sbjct: 96 WYGPVGKDGST 106
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 28.5 bits (63), Expect = 0.65
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 43 IKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLI 82
+K + +K + LG G + +A+ A VY I
Sbjct: 67 LKVMPIKRDSKIL--YLGASAGTTPSHVADIADKGIVYAI 104
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 26.2 bits (58), Expect = 1.1
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 5 FTVK---DIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
F +K + K + + + +R G+ + ++D L +++ D +
Sbjct: 16 FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 68
>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 26.2 bits (58), Expect = 1.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 33 KGKILKDSDDIKSLGLKNGDMVFIK 57
++ D + L + GD+V I+
Sbjct: 21 MSRVRLDESSRRLLDAEIGDVVEIE 45
>d2axwa1 b.2.3.2 (A:1-121) Invasin AfaD {Escherichia coli [TaxId:
562]}
Length = 121
Score = 25.6 bits (56), Expect = 3.4
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 133 NLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
L + P + FD ++ N G + FS+ +C
Sbjct: 61 ELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYR-FSVGGACV 117
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
GART {Escherichia coli [TaxId: 562]}
Length = 209
Score = 25.6 bits (55), Expect = 4.7
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 6 TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSD 41
+ DI V + +YP + G++ +
Sbjct: 161 SEDDITARVQTQEHAIYP--LVISWFADGRLKMHEN 194
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 24.9 bits (53), Expect = 6.9
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 125 PSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFS 184
PSV+ + L++ + G + + T+ P+T + + + Y + ++
Sbjct: 1 PSVY-------VRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD 53
Query: 185 LLTSCFPALLFASAGMYQMTVWAL-GKHKNYKKEFPDYPKQRKAIVPFVI 233
L G + GK P YP+ + V+
Sbjct: 54 EALILEEGLGRKLLGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVL 103
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD
{Bacillus subtilis [TaxId: 1423]}
Length = 270
Score = 24.9 bits (54), Expect = 9.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 40 SDDIKSLGLKNGDMVFI 56
++D+K+LGLK G V +
Sbjct: 18 TEDLKALGLKKGMTVLV 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.436
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 914,742
Number of extensions: 42467
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 25
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)