Query psy9587
Match_columns 236
No_of_seqs 168 out of 1339
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:28:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01492 Aos1_SUMO Ubiquitin ac 100.0 9.8E-36 2.1E-40 254.7 12.4 137 99-236 2-140 (197)
2 cd01485 E1-1_like Ubiquitin ac 100.0 1.8E-34 3.9E-39 247.0 12.6 136 100-236 1-143 (198)
3 TIGR02356 adenyl_thiF thiazole 100.0 2.8E-34 6E-39 246.3 11.8 136 100-236 1-141 (202)
4 cd00757 ThiF_MoeB_HesA_family 100.0 2.9E-34 6.4E-39 250.0 12.0 136 100-236 1-141 (228)
5 PRK05690 molybdopterin biosynt 100.0 5.4E-34 1.2E-38 251.4 12.3 138 98-236 10-152 (245)
6 PRK08223 hypothetical protein; 100.0 5.5E-34 1.2E-38 256.1 12.5 137 99-236 8-149 (287)
7 TIGR02355 moeB molybdopterin s 100.0 1.2E-33 2.6E-38 248.6 13.1 137 99-236 3-144 (240)
8 PRK05597 molybdopterin biosynt 100.0 2.4E-33 5.1E-38 259.2 12.0 139 97-236 5-148 (355)
9 PRK07411 hypothetical protein; 100.0 3.5E-33 7.6E-38 261.0 12.1 138 98-236 16-158 (390)
10 PRK08328 hypothetical protein; 100.0 9.2E-33 2E-37 241.6 12.3 138 98-236 7-148 (231)
11 PRK07878 molybdopterin biosynt 100.0 1.3E-32 2.9E-37 257.2 12.4 138 98-236 20-162 (392)
12 PRK05600 thiamine biosynthesis 100.0 1.3E-32 2.9E-37 255.6 12.1 138 98-236 19-161 (370)
13 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.4E-32 3E-37 247.4 11.8 133 100-236 1-135 (286)
14 PRK15116 sulfur acceptor prote 100.0 2.9E-31 6.2E-36 236.9 12.8 137 99-236 11-151 (268)
15 PF00899 ThiF: ThiF family; I 100.0 7E-31 1.5E-35 210.9 13.6 121 115-236 1-122 (135)
16 PRK12475 thiamine/molybdopteri 100.0 3.5E-31 7.5E-36 243.5 13.0 137 99-236 3-146 (338)
17 PRK07688 thiamine/molybdopteri 100.0 3.4E-31 7.4E-36 243.6 12.5 137 99-236 3-146 (339)
18 cd01493 APPBP1_RUB Ubiquitin a 100.0 5.4E-31 1.2E-35 248.4 12.4 136 100-236 2-142 (425)
19 cd01484 E1-2_like Ubiquitin ac 100.0 1.6E-30 3.6E-35 228.1 13.6 117 118-235 1-120 (234)
20 PRK14851 hypothetical protein; 100.0 2.7E-30 5.9E-35 255.4 12.3 139 97-236 22-165 (679)
21 cd01488 Uba3_RUB Ubiquitin act 100.0 1.2E-29 2.5E-34 228.9 13.5 117 118-235 1-125 (291)
22 cd01483 E1_enzyme_family Super 100.0 2.4E-29 5.2E-34 203.4 13.7 118 118-236 1-119 (143)
23 PRK08762 molybdopterin biosynt 100.0 8.6E-30 1.9E-34 236.8 12.0 138 98-236 113-255 (376)
24 cd00755 YgdL_like Family of ac 100.0 1.3E-29 2.9E-34 222.0 12.2 123 113-236 8-132 (231)
25 cd01489 Uba2_SUMO Ubiquitin ac 100.0 2E-29 4.4E-34 229.4 13.9 118 118-236 1-120 (312)
26 TIGR01408 Ube1 ubiquitin-activ 100.0 9.6E-30 2.1E-34 260.0 13.0 137 98-235 399-547 (1008)
27 COG0476 ThiF Dinucleotide-util 100.0 2.1E-29 4.5E-34 222.3 13.0 138 98-236 8-150 (254)
28 PRK14852 hypothetical protein; 100.0 2.2E-29 4.7E-34 254.2 12.7 138 98-236 312-454 (989)
29 PRK08644 thiamine biosynthesis 100.0 7.5E-29 1.6E-33 214.5 12.3 134 101-236 11-148 (212)
30 TIGR01408 Ube1 ubiquitin-activ 100.0 3.9E-29 8.4E-34 255.6 11.8 135 98-236 4-142 (1008)
31 PRK07877 hypothetical protein; 100.0 4.7E-29 1E-33 247.6 11.9 137 97-236 86-226 (722)
32 COG1179 Dinucleotide-utilizing 100.0 4E-29 8.8E-34 218.0 10.0 137 98-235 10-150 (263)
33 KOG2017|consensus 100.0 2.6E-29 5.7E-34 227.8 6.8 138 97-235 43-185 (427)
34 cd01490 Ube1_repeat2 Ubiquitin 100.0 3E-28 6.4E-33 229.8 13.9 117 118-235 1-127 (435)
35 cd01486 Apg7 Apg7 is an E1-lik 100.0 7.1E-28 1.5E-32 217.4 13.4 117 118-235 1-137 (307)
36 cd01487 E1_ThiF_like E1_ThiF_l 99.9 2.3E-27 4.9E-32 199.4 12.9 117 118-236 1-119 (174)
37 TIGR01381 E1_like_apg7 E1-like 99.9 5.2E-27 1.1E-31 228.6 12.7 122 113-235 335-477 (664)
38 PRK06153 hypothetical protein; 99.9 5.3E-26 1.1E-30 211.0 12.6 120 113-235 173-295 (393)
39 KOG2014|consensus 99.9 3E-26 6.5E-31 204.6 9.8 137 98-235 11-149 (331)
40 KOG2013|consensus 99.9 1.8E-26 4E-31 216.1 6.6 121 114-235 10-132 (603)
41 PTZ00245 ubiquitin activating 99.9 8.6E-26 1.9E-30 199.0 9.9 113 98-217 6-120 (287)
42 TIGR02354 thiF_fam2 thiamine b 99.9 4.1E-25 8.9E-30 189.7 13.1 119 113-233 18-138 (200)
43 KOG2015|consensus 99.9 9.3E-25 2E-29 196.9 10.4 114 115-229 39-152 (422)
44 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 3.2E-24 7E-29 189.3 13.0 110 115-229 10-129 (244)
45 TIGR03603 cyclo_dehy_ocin bact 99.9 1.1E-23 2.4E-28 192.3 8.7 124 98-236 52-183 (318)
46 KOG2018|consensus 99.9 1.2E-23 2.5E-28 189.4 8.3 135 100-235 56-194 (430)
47 KOG2012|consensus 99.9 1E-23 2.2E-28 207.1 6.1 136 99-235 411-558 (1013)
48 KOG2016|consensus 99.9 9.6E-23 2.1E-27 189.6 5.3 139 97-236 6-149 (523)
49 KOG2012|consensus 99.9 3.3E-22 7.1E-27 196.6 9.2 134 98-235 17-152 (1013)
50 KOG2336|consensus 99.7 7E-18 1.5E-22 150.4 10.0 118 113-232 79-209 (422)
51 KOG2337|consensus 99.6 3.2E-15 6.9E-20 142.0 8.2 121 114-235 338-479 (669)
52 TIGR03693 ocin_ThiF_like putat 99.3 2.6E-12 5.6E-17 125.3 9.3 123 98-235 103-235 (637)
53 COG4015 Predicted dinucleotide 98.8 1.5E-08 3.3E-13 84.6 8.8 114 117-235 19-138 (217)
54 COG1748 LYS9 Saccharopine dehy 98.2 1.9E-05 4.1E-10 74.4 11.1 93 117-235 2-96 (389)
55 PRK12549 shikimate 5-dehydroge 98.1 2.3E-05 5E-10 70.8 9.6 76 114-214 125-200 (284)
56 PRK06718 precorrin-2 dehydroge 98.0 4.5E-05 9.7E-10 65.6 10.4 91 113-234 7-97 (202)
57 PF13241 NAD_binding_7: Putati 98.0 2E-05 4.2E-10 60.6 6.6 86 113-235 4-89 (103)
58 PF01488 Shikimate_DH: Shikima 97.9 4.8E-05 1E-09 61.1 8.0 78 113-217 9-86 (135)
59 TIGR01470 cysG_Nterm siroheme 97.9 0.00011 2.3E-09 63.5 10.7 91 114-234 7-97 (205)
60 PF03435 Saccharop_dh: Sacchar 97.8 9.1E-05 2E-09 68.9 8.8 92 119-235 1-95 (386)
61 PRK06719 precorrin-2 dehydroge 97.7 0.00037 8E-09 57.7 10.2 86 113-231 10-95 (157)
62 PRK05562 precorrin-2 dehydroge 97.7 0.00032 7E-09 61.5 10.2 105 101-235 10-114 (223)
63 PRK12548 shikimate 5-dehydroge 97.4 0.0011 2.4E-08 59.9 9.6 36 114-149 124-159 (289)
64 PRK04148 hypothetical protein; 97.3 0.0024 5.2E-08 51.9 9.9 92 115-236 16-107 (134)
65 COG1648 CysG Siroheme synthase 97.3 0.0015 3.3E-08 56.8 8.7 93 113-235 9-101 (210)
66 PF00056 Ldh_1_N: lactate/mala 97.2 0.0014 3.1E-08 53.1 7.7 74 118-216 2-79 (141)
67 PRK14027 quinate/shikimate deh 97.2 0.0014 3.1E-08 59.2 8.4 37 114-150 125-161 (283)
68 COG0569 TrkA K+ transport syst 97.2 0.0022 4.7E-08 56.1 9.2 91 118-235 2-96 (225)
69 PRK00066 ldh L-lactate dehydro 97.1 0.0028 6E-08 58.1 9.4 76 115-215 5-82 (315)
70 PRK12749 quinate/shikimate deh 97.1 0.0034 7.3E-08 56.9 9.4 36 114-149 122-157 (288)
71 TIGR01809 Shik-DH-AROM shikima 97.1 0.0022 4.7E-08 57.8 8.0 35 114-148 123-157 (282)
72 cd05291 HicDH_like L-2-hydroxy 97.1 0.0032 7E-08 57.2 9.1 74 118-216 2-78 (306)
73 PRK10637 cysG siroheme synthas 97.0 0.0048 1.1E-07 59.2 10.5 93 113-235 9-101 (457)
74 COG0373 HemA Glutamyl-tRNA red 97.0 0.0014 3E-08 62.4 6.6 75 114-218 176-250 (414)
75 cd05290 LDH_3 A subgroup of L- 97.0 0.0038 8.1E-08 57.2 8.8 74 118-216 1-78 (307)
76 PRK14106 murD UDP-N-acetylmura 96.9 0.0049 1.1E-07 58.3 9.4 94 114-235 3-96 (450)
77 PRK00258 aroE shikimate 5-dehy 96.9 0.0046 1E-07 55.4 8.3 36 114-149 121-156 (278)
78 cd00300 LDH_like L-lactate deh 96.8 0.0061 1.3E-07 55.3 8.5 72 119-216 1-76 (300)
79 PF01113 DapB_N: Dihydrodipico 96.8 0.0083 1.8E-07 47.5 8.2 92 118-236 2-96 (124)
80 PRK13940 glutamyl-tRNA reducta 96.8 0.0039 8.4E-08 59.4 7.2 76 114-218 179-254 (414)
81 COG0169 AroE Shikimate 5-dehyd 96.7 0.0072 1.6E-07 54.9 8.3 34 115-148 125-158 (283)
82 PTZ00117 malate dehydrogenase; 96.7 0.0084 1.8E-07 55.0 8.3 35 115-149 4-38 (319)
83 cd05213 NAD_bind_Glutamyl_tRNA 96.6 0.01 2.2E-07 54.1 8.7 84 114-227 176-259 (311)
84 cd05293 LDH_1 A subgroup of L- 96.6 0.011 2.3E-07 54.3 8.7 73 117-215 4-80 (312)
85 PLN02602 lactate dehydrogenase 96.6 0.011 2.4E-07 55.1 8.5 74 117-216 38-115 (350)
86 PLN02819 lysine-ketoglutarate 96.6 0.011 2.4E-07 62.1 9.4 107 115-235 568-676 (1042)
87 COG1086 Predicted nucleoside-d 96.5 0.0085 1.8E-07 58.9 7.3 81 114-214 248-333 (588)
88 cd01075 NAD_bind_Leu_Phe_Val_D 96.4 0.027 5.8E-07 48.3 9.5 109 113-235 25-136 (200)
89 PTZ00082 L-lactate dehydrogena 96.4 0.015 3.3E-07 53.4 8.4 35 115-149 5-39 (321)
90 PF02719 Polysacc_synt_2: Poly 96.4 0.0038 8.3E-08 56.9 4.3 76 119-214 1-85 (293)
91 KOG4169|consensus 96.4 0.012 2.5E-07 52.2 7.1 78 115-214 4-91 (261)
92 PF03807 F420_oxidored: NADP o 96.4 0.0051 1.1E-07 45.6 4.3 78 118-226 1-81 (96)
93 cd01078 NAD_bind_H4MPT_DH NADP 96.4 0.025 5.4E-07 47.6 8.9 80 114-216 26-107 (194)
94 PF02254 TrkA_N: TrkA-N domain 96.4 0.052 1.1E-06 41.4 9.9 83 119-230 1-86 (116)
95 PRK06522 2-dehydropantoate 2-r 96.2 0.02 4.4E-07 50.9 7.7 31 118-149 2-32 (304)
96 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0047 1E-07 50.7 3.3 98 118-235 1-100 (157)
97 PRK07066 3-hydroxybutyryl-CoA 96.1 0.023 5E-07 52.4 8.1 34 116-150 7-40 (321)
98 cd05312 NAD_bind_1_malic_enz N 96.1 0.037 8E-07 50.2 9.1 102 113-236 22-137 (279)
99 PRK01438 murD UDP-N-acetylmura 96.1 0.024 5.3E-07 54.2 8.4 92 115-235 15-106 (480)
100 cd01065 NAD_bind_Shikimate_DH 96.1 0.013 2.7E-07 47.0 5.5 37 114-150 17-53 (155)
101 cd01080 NAD_bind_m-THF_DH_Cycl 96.1 0.016 3.5E-07 48.6 6.2 35 113-148 41-76 (168)
102 cd05311 NAD_bind_2_malic_enz N 96.1 0.0092 2E-07 52.2 4.9 37 114-150 23-61 (226)
103 TIGR01759 MalateDH-SF1 malate 96.0 0.023 5E-07 52.4 7.6 79 115-216 2-89 (323)
104 PRK06130 3-hydroxybutyryl-CoA 96.0 0.037 8E-07 49.9 8.7 33 117-150 5-37 (311)
105 cd01076 NAD_bind_1_Glu_DH NAD( 96.0 0.05 1.1E-06 47.7 9.2 36 113-148 28-63 (227)
106 cd05211 NAD_bind_Glu_Leu_Phe_V 96.0 0.06 1.3E-06 46.9 9.4 38 113-150 20-57 (217)
107 cd05191 NAD_bind_amino_acid_DH 96.0 0.016 3.5E-07 42.7 5.0 37 114-150 21-57 (86)
108 TIGR02992 ectoine_eutC ectoine 95.9 0.049 1.1E-06 50.0 9.3 75 116-216 129-204 (326)
109 PF03949 Malic_M: Malic enzyme 95.9 0.026 5.6E-07 50.6 7.1 103 113-236 22-138 (255)
110 PRK08374 homoserine dehydrogen 95.9 0.093 2E-06 48.6 11.0 21 117-137 3-23 (336)
111 PF01118 Semialdhyde_dh: Semia 95.9 0.054 1.2E-06 42.4 8.1 88 118-235 1-94 (121)
112 PLN00203 glutamyl-tRNA reducta 95.9 0.023 4.9E-07 55.8 7.1 76 114-216 264-339 (519)
113 PF13460 NAD_binding_10: NADH( 95.9 0.071 1.5E-06 43.5 9.1 86 119-235 1-93 (183)
114 COG1063 Tdh Threonine dehydrog 95.9 0.023 4.9E-07 52.6 6.8 92 118-234 171-266 (350)
115 PF00070 Pyr_redox: Pyridine n 95.9 0.057 1.2E-06 38.9 7.5 53 118-183 1-53 (80)
116 PRK06270 homoserine dehydrogen 95.8 0.071 1.5E-06 49.4 9.9 22 117-138 3-24 (341)
117 TIGR01202 bchC 2-desacetyl-2-h 95.8 0.034 7.5E-07 49.9 7.7 34 115-148 144-177 (308)
118 PRK11880 pyrroline-5-carboxyla 95.8 0.023 4.9E-07 50.1 6.3 31 118-148 4-36 (267)
119 PRK06141 ornithine cyclodeamin 95.8 0.055 1.2E-06 49.4 8.9 76 115-217 124-200 (314)
120 PRK08293 3-hydroxybutyryl-CoA 95.8 0.032 7E-07 50.0 7.1 32 117-149 4-35 (287)
121 cd05292 LDH_2 A subgroup of L- 95.7 0.042 9E-07 50.1 7.8 32 118-149 2-34 (308)
122 PF02558 ApbA: Ketopantoate re 95.7 0.011 2.4E-07 47.3 3.6 89 119-229 1-90 (151)
123 PTZ00325 malate dehydrogenase; 95.7 0.03 6.5E-07 51.6 6.8 34 115-148 7-42 (321)
124 PRK15469 ghrA bifunctional gly 95.7 0.097 2.1E-06 48.0 10.1 35 113-148 133-167 (312)
125 PRK00048 dihydrodipicolinate r 95.7 0.081 1.8E-06 47.0 9.3 32 118-149 3-36 (257)
126 PRK08618 ornithine cyclodeamin 95.6 0.073 1.6E-06 48.8 9.1 78 115-218 126-204 (325)
127 cd01339 LDH-like_MDH L-lactate 95.6 0.043 9.2E-07 49.6 7.5 31 119-149 1-31 (300)
128 PRK03562 glutathione-regulated 95.6 0.029 6.3E-07 56.0 6.9 86 117-231 401-489 (621)
129 PRK07819 3-hydroxybutyryl-CoA 95.6 0.044 9.5E-07 49.4 7.5 33 117-150 6-38 (286)
130 PRK13304 L-aspartate dehydroge 95.6 0.075 1.6E-06 47.4 8.9 32 118-149 3-36 (265)
131 TIGR03882 cyclo_dehyd_2 bacter 95.6 0.0043 9.4E-08 53.1 0.9 48 113-161 102-159 (193)
132 PRK13301 putative L-aspartate 95.6 0.022 4.8E-07 51.3 5.4 108 117-235 3-118 (267)
133 PRK05708 2-dehydropantoate 2-r 95.6 0.038 8.3E-07 50.1 7.0 31 118-149 4-34 (305)
134 PRK07340 ornithine cyclodeamin 95.6 0.073 1.6E-06 48.5 8.8 75 115-217 124-199 (304)
135 cd00762 NAD_bind_malic_enz NAD 95.6 0.055 1.2E-06 48.4 7.8 103 113-236 22-138 (254)
136 PRK07634 pyrroline-5-carboxyla 95.6 0.1 2.2E-06 45.2 9.3 81 116-227 4-87 (245)
137 PRK09599 6-phosphogluconate de 95.5 0.045 9.8E-07 49.4 7.3 108 118-235 2-116 (301)
138 cd01338 MDH_choloroplast_like 95.5 0.021 4.7E-07 52.5 5.2 33 116-148 2-41 (322)
139 PRK06223 malate dehydrogenase; 95.5 0.1 2.2E-06 47.0 9.5 32 117-148 3-34 (307)
140 PRK09496 trkA potassium transp 95.5 0.14 3.1E-06 48.2 10.8 85 118-230 2-89 (453)
141 cd01337 MDH_glyoxysomal_mitoch 95.5 0.041 8.8E-07 50.5 6.7 75 118-216 2-78 (310)
142 PRK02705 murD UDP-N-acetylmura 95.4 0.085 1.8E-06 50.0 9.0 93 118-235 2-96 (459)
143 TIGR01757 Malate-DH_plant mala 95.4 0.054 1.2E-06 51.3 7.5 79 115-216 43-130 (387)
144 KOG0069|consensus 95.4 0.061 1.3E-06 50.0 7.7 81 113-228 159-240 (336)
145 PRK06249 2-dehydropantoate 2-r 95.4 0.047 1E-06 49.5 6.9 33 117-150 6-38 (313)
146 COG1893 ApbA Ketopantoate redu 95.4 0.036 7.7E-07 50.7 6.0 29 118-147 2-30 (307)
147 COG0039 Mdh Malate/lactate deh 95.4 0.036 7.9E-07 51.0 6.0 32 118-149 2-34 (313)
148 TIGR01771 L-LDH-NAD L-lactate 95.3 0.048 1.1E-06 49.6 6.8 71 121-216 1-74 (299)
149 PRK00141 murD UDP-N-acetylmura 95.3 0.065 1.4E-06 51.6 7.9 34 114-148 13-46 (473)
150 PRK09260 3-hydroxybutyryl-CoA 95.3 0.012 2.6E-07 52.7 2.7 33 117-150 2-34 (288)
151 PF03446 NAD_binding_2: NAD bi 95.3 0.018 3.9E-07 47.3 3.5 107 117-235 2-116 (163)
152 PRK07502 cyclohexadienyl dehyd 95.3 0.052 1.1E-06 49.0 6.8 33 117-149 7-40 (307)
153 PRK09496 trkA potassium transp 95.3 0.069 1.5E-06 50.3 7.8 93 115-234 230-325 (453)
154 cd05313 NAD_bind_2_Glu_DH NAD( 95.3 0.17 3.6E-06 45.3 9.9 36 113-148 35-70 (254)
155 COG0281 SfcA Malic enzyme [Ene 95.3 0.085 1.8E-06 50.3 8.3 99 113-236 196-297 (432)
156 PRK07417 arogenate dehydrogena 95.3 0.05 1.1E-06 48.6 6.5 31 118-149 2-32 (279)
157 PRK08291 ectoine utilization p 95.2 0.13 2.8E-06 47.3 9.2 75 116-216 132-207 (330)
158 cd00650 LDH_MDH_like NAD-depen 95.2 0.059 1.3E-06 47.7 6.7 32 119-150 1-36 (263)
159 cd05296 GH4_P_beta_glucosidase 95.2 0.1 2.2E-06 49.8 8.7 95 118-232 2-103 (419)
160 PF02826 2-Hacid_dh_C: D-isome 95.2 0.039 8.5E-07 46.1 5.2 40 113-153 33-72 (178)
161 PRK12921 2-dehydropantoate 2-r 95.1 0.039 8.5E-07 49.2 5.4 30 118-148 2-31 (305)
162 PRK03803 murD UDP-N-acetylmura 95.0 0.12 2.5E-06 49.1 8.6 90 117-235 7-96 (448)
163 TIGR01915 npdG NADPH-dependent 95.0 0.18 3.9E-06 43.4 9.1 85 118-227 2-89 (219)
164 cd08230 glucose_DH Glucose deh 95.0 0.11 2.3E-06 47.4 8.0 33 115-148 172-204 (355)
165 PRK05442 malate dehydrogenase; 95.0 0.037 8E-07 51.1 5.1 33 116-148 4-43 (326)
166 PRK00094 gpsA NAD(P)H-dependen 95.0 0.048 1E-06 49.0 5.7 32 118-150 3-34 (325)
167 TIGR03589 PseB UDP-N-acetylglu 95.0 0.37 8E-06 43.7 11.5 35 115-149 3-39 (324)
168 PRK01710 murD UDP-N-acetylmura 95.0 0.097 2.1E-06 50.0 7.9 93 115-235 13-105 (458)
169 PRK14619 NAD(P)H-dependent gly 95.0 0.13 2.8E-06 46.6 8.3 32 117-149 5-36 (308)
170 PRK06476 pyrroline-5-carboxyla 95.0 0.14 3E-06 45.0 8.3 23 118-140 2-24 (258)
171 TIGR01763 MalateDH_bact malate 94.9 0.11 2.3E-06 47.5 7.7 31 118-148 3-33 (305)
172 PRK09880 L-idonate 5-dehydroge 94.8 0.19 4.1E-06 45.6 9.1 35 115-149 169-203 (343)
173 PRK07063 short chain dehydroge 94.8 0.26 5.7E-06 42.4 9.7 80 114-214 5-94 (260)
174 PRK02006 murD UDP-N-acetylmura 94.8 0.19 4.2E-06 48.5 9.6 34 115-149 6-39 (498)
175 PRK07680 late competence prote 94.8 0.13 2.8E-06 45.7 7.8 31 118-148 2-35 (273)
176 PRK06392 homoserine dehydrogen 94.8 0.24 5.2E-06 45.8 9.8 20 118-137 2-21 (326)
177 PRK09242 tropinone reductase; 94.7 0.4 8.8E-06 41.2 10.6 81 114-215 7-97 (257)
178 PRK05854 short chain dehydroge 94.7 0.22 4.8E-06 44.9 9.2 34 114-148 12-46 (313)
179 TIGR00507 aroE shikimate 5-deh 94.7 0.26 5.5E-06 43.9 9.5 35 115-150 116-150 (270)
180 PLN00106 malate dehydrogenase 94.7 0.17 3.6E-06 46.8 8.5 36 115-150 17-54 (323)
181 PRK06197 short chain dehydroge 94.7 0.26 5.7E-06 43.9 9.5 34 114-148 14-48 (306)
182 PRK03659 glutathione-regulated 94.6 0.086 1.9E-06 52.4 6.8 86 117-231 401-489 (601)
183 PRK08229 2-dehydropantoate 2-r 94.6 0.078 1.7E-06 48.2 6.1 32 118-150 4-35 (341)
184 PRK14620 NAD(P)H-dependent gly 94.6 0.045 9.9E-07 49.7 4.5 32 118-150 2-33 (326)
185 PF10087 DUF2325: Uncharacteri 94.6 0.22 4.8E-06 37.6 7.6 64 171-236 10-80 (97)
186 KOG2014|consensus 94.6 0.011 2.4E-07 54.0 0.4 26 11-36 2-27 (331)
187 TIGR00065 ftsZ cell division p 94.5 0.24 5.1E-06 46.3 9.0 48 117-165 18-69 (349)
188 cd02201 FtsZ_type1 FtsZ is a G 94.5 0.26 5.6E-06 44.9 9.1 47 118-165 2-52 (304)
189 PF05368 NmrA: NmrA-like famil 94.5 0.46 9.9E-06 40.5 10.2 90 119-235 1-98 (233)
190 PRK06928 pyrroline-5-carboxyla 94.5 0.43 9.4E-06 42.6 10.4 80 118-227 3-85 (277)
191 COG1250 FadB 3-hydroxyacyl-CoA 94.5 0.1 2.2E-06 48.1 6.3 33 116-149 3-35 (307)
192 PF00106 adh_short: short chai 94.4 0.35 7.7E-06 38.5 8.9 79 117-215 1-89 (167)
193 PRK13018 cell division protein 94.4 0.27 5.8E-06 46.5 9.2 71 115-186 27-112 (378)
194 PRK14192 bifunctional 5,10-met 94.4 0.07 1.5E-06 48.4 5.1 35 113-148 156-191 (283)
195 PRK07574 formate dehydrogenase 94.3 0.21 4.5E-06 47.3 8.3 36 113-149 189-224 (385)
196 TIGR01035 hemA glutamyl-tRNA r 94.3 0.069 1.5E-06 50.8 5.1 35 114-148 178-212 (417)
197 cd05197 GH4_glycoside_hydrolas 94.3 0.38 8.1E-06 46.1 10.1 93 118-232 2-102 (425)
198 PRK08251 short chain dehydroge 94.2 0.27 5.9E-06 41.9 8.3 77 117-214 3-89 (248)
199 COG1062 AdhC Zn-dependent alco 94.2 0.37 8.1E-06 45.0 9.5 95 116-235 186-283 (366)
200 PRK13303 L-aspartate dehydroge 94.2 0.27 5.8E-06 43.9 8.4 30 118-147 3-33 (265)
201 PLN03209 translocon at the inn 94.2 0.57 1.2E-05 46.6 11.4 80 115-215 79-168 (576)
202 PRK06545 prephenate dehydrogen 94.2 0.089 1.9E-06 48.9 5.5 32 118-150 2-33 (359)
203 PRK04308 murD UDP-N-acetylmura 94.2 0.35 7.6E-06 45.8 9.7 92 115-235 4-95 (445)
204 PF02737 3HCDH_N: 3-hydroxyacy 94.2 0.073 1.6E-06 44.8 4.5 34 118-152 1-34 (180)
205 PRK07679 pyrroline-5-carboxyla 94.2 0.34 7.3E-06 43.2 9.0 24 117-140 4-27 (279)
206 PRK07831 short chain dehydroge 94.2 0.46 9.9E-06 41.1 9.7 32 115-147 16-49 (262)
207 PRK10669 putative cation:proto 94.2 0.13 2.9E-06 50.4 6.9 33 117-150 418-450 (558)
208 TIGR03026 NDP-sugDHase nucleot 94.2 0.24 5.3E-06 46.7 8.5 38 118-156 2-39 (411)
209 PRK07062 short chain dehydroge 94.1 0.65 1.4E-05 40.1 10.6 81 114-215 6-96 (265)
210 PRK07531 bifunctional 3-hydrox 94.1 0.14 3.1E-06 49.7 7.0 33 117-150 5-37 (495)
211 PLN02688 pyrroline-5-carboxyla 94.1 0.28 6E-06 43.1 8.3 78 118-227 2-82 (266)
212 TIGR00036 dapB dihydrodipicoli 94.1 0.42 9.1E-06 42.7 9.4 30 118-147 3-34 (266)
213 PRK09330 cell division protein 94.0 0.32 6.9E-06 46.1 8.9 98 116-235 13-131 (384)
214 PRK12769 putative oxidoreducta 94.0 0.36 7.8E-06 48.3 9.8 34 115-149 326-359 (654)
215 PF01408 GFO_IDH_MocA: Oxidore 94.0 0.11 2.3E-06 39.8 4.8 33 118-150 2-36 (120)
216 PLN03139 formate dehydrogenase 94.0 0.19 4.1E-06 47.6 7.3 36 113-149 196-231 (386)
217 COG0300 DltE Short-chain dehyd 94.0 0.4 8.6E-06 43.3 9.0 80 114-215 4-93 (265)
218 PRK12771 putative glutamate sy 93.9 0.42 9.1E-06 46.9 9.9 35 115-150 136-170 (564)
219 PF10727 Rossmann-like: Rossma 93.9 0.13 2.9E-06 41.2 5.3 81 116-228 10-90 (127)
220 PRK12439 NAD(P)H-dependent gly 93.9 0.14 3E-06 47.3 6.1 93 117-229 8-100 (341)
221 PRK11199 tyrA bifunctional cho 93.9 0.26 5.6E-06 46.2 8.0 33 116-149 98-131 (374)
222 PLN00112 malate dehydrogenase 93.8 0.3 6.5E-06 47.1 8.5 77 115-216 99-186 (444)
223 PRK12550 shikimate 5-dehydroge 93.8 0.097 2.1E-06 47.1 4.9 40 117-156 123-162 (272)
224 PRK12491 pyrroline-5-carboxyla 93.8 0.4 8.7E-06 43.0 8.9 78 118-227 4-84 (272)
225 PRK12779 putative bifunctional 93.8 0.46 1E-05 49.9 10.4 94 115-216 305-402 (944)
226 TIGR03451 mycoS_dep_FDH mycoth 93.8 0.2 4.3E-06 45.8 7.0 34 115-148 176-209 (358)
227 KOG0022|consensus 93.8 0.3 6.6E-06 45.3 7.9 97 115-235 192-292 (375)
228 PLN02477 glutamate dehydrogena 93.8 0.49 1.1E-05 45.2 9.7 37 113-149 203-239 (410)
229 PRK13302 putative L-aspartate 93.7 0.12 2.6E-06 46.4 5.3 35 115-149 5-41 (271)
230 PTZ00431 pyrroline carboxylate 93.7 0.32 6.9E-06 43.1 7.9 30 118-147 5-37 (260)
231 COG0771 MurD UDP-N-acetylmuram 93.7 0.24 5.2E-06 47.8 7.5 92 115-235 6-97 (448)
232 PRK06199 ornithine cyclodeamin 93.7 0.5 1.1E-05 44.6 9.6 76 116-216 155-233 (379)
233 PRK02472 murD UDP-N-acetylmura 93.7 0.2 4.3E-06 47.3 7.0 92 115-235 4-96 (447)
234 PLN02427 UDP-apiose/xylose syn 93.7 0.59 1.3E-05 43.2 10.0 35 114-148 12-47 (386)
235 PRK11908 NAD-dependent epimera 93.6 0.95 2.1E-05 41.0 11.1 31 118-148 3-34 (347)
236 PRK00436 argC N-acetyl-gamma-g 93.6 0.34 7.4E-06 44.9 8.2 92 117-235 3-96 (343)
237 PRK12490 6-phosphogluconate de 93.6 0.25 5.5E-06 44.5 7.2 108 118-235 2-116 (299)
238 PRK05875 short chain dehydroge 93.6 0.64 1.4E-05 40.4 9.6 34 115-149 6-40 (276)
239 cd05297 GH4_alpha_glucosidase_ 93.6 0.24 5.1E-06 47.3 7.3 77 118-215 2-83 (423)
240 PLN02206 UDP-glucuronate decar 93.6 0.56 1.2E-05 44.9 9.8 34 114-148 117-151 (442)
241 TIGR00872 gnd_rel 6-phosphoglu 93.6 0.19 4.2E-06 45.3 6.4 109 118-235 2-115 (298)
242 PRK06046 alanine dehydrogenase 93.5 0.48 1E-05 43.5 9.1 74 116-216 129-203 (326)
243 TIGR02622 CDP_4_6_dhtase CDP-g 93.5 0.72 1.6E-05 41.9 10.1 34 115-149 3-37 (349)
244 PRK00683 murD UDP-N-acetylmura 93.5 0.18 4E-06 47.5 6.4 32 117-149 4-35 (418)
245 PRK06035 3-hydroxyacyl-CoA deh 93.5 0.12 2.6E-06 46.3 4.9 34 116-150 3-36 (291)
246 PRK12826 3-ketoacyl-(acyl-carr 93.5 0.68 1.5E-05 39.2 9.3 34 115-149 5-39 (251)
247 TIGR02853 spore_dpaA dipicolin 93.5 0.12 2.7E-06 46.7 5.0 36 113-149 148-183 (287)
248 PRK00045 hemA glutamyl-tRNA re 93.5 0.12 2.6E-06 49.2 5.0 35 114-148 180-214 (423)
249 TIGR00715 precor6x_red precorr 93.5 0.7 1.5E-05 41.3 9.7 90 118-235 2-96 (256)
250 PRK04690 murD UDP-N-acetylmura 93.4 0.42 9.2E-06 45.9 8.8 91 115-235 7-97 (468)
251 PTZ00142 6-phosphogluconate de 93.4 0.25 5.4E-06 47.9 7.2 112 118-235 3-123 (470)
252 TIGR03466 HpnA hopanoid-associ 93.4 0.59 1.3E-05 41.3 9.1 31 118-149 2-33 (328)
253 PRK08818 prephenate dehydrogen 93.4 0.41 8.9E-06 45.1 8.4 33 116-148 4-37 (370)
254 smart00846 Gp_dh_N Glyceraldeh 93.3 0.058 1.2E-06 44.4 2.3 101 118-228 2-109 (149)
255 PLN03129 NADP-dependent malic 93.3 0.49 1.1E-05 47.0 9.1 101 113-236 318-433 (581)
256 PLN02852 ferredoxin-NADP+ redu 93.3 0.46 1E-05 46.3 8.9 35 115-150 25-61 (491)
257 TIGR00873 gnd 6-phosphoglucona 93.3 0.24 5.3E-06 47.9 7.0 112 119-235 2-120 (467)
258 TIGR01850 argC N-acetyl-gamma- 93.3 0.38 8.2E-06 44.7 8.0 92 118-235 2-96 (346)
259 PF01266 DAO: FAD dependent ox 93.3 0.14 3.1E-06 45.3 5.0 33 119-152 2-34 (358)
260 CHL00194 ycf39 Ycf39; Provisio 93.3 0.6 1.3E-05 42.0 9.1 29 118-147 2-31 (317)
261 PRK07231 fabG 3-ketoacyl-(acyl 93.2 0.53 1.2E-05 39.9 8.3 34 115-149 4-38 (251)
262 PRK00421 murC UDP-N-acetylmura 93.2 0.24 5.3E-06 47.2 6.7 88 115-235 6-94 (461)
263 cd08239 THR_DH_like L-threonin 93.2 0.3 6.6E-06 43.8 7.1 35 115-149 163-197 (339)
264 PRK12809 putative oxidoreducta 93.2 0.76 1.6E-05 46.0 10.4 35 115-150 309-343 (639)
265 PRK13529 malate dehydrogenase; 93.1 0.48 1E-05 46.9 8.8 109 113-236 292-414 (563)
266 TIGR03376 glycerol3P_DH glycer 93.1 0.41 8.8E-06 44.6 7.9 91 118-228 1-104 (342)
267 PRK13243 glyoxylate reductase; 93.1 0.15 3.2E-06 47.1 5.0 36 113-149 147-182 (333)
268 PRK04207 glyceraldehyde-3-phos 93.1 0.42 9.1E-06 44.3 7.9 35 201-236 73-107 (341)
269 KOG0024|consensus 93.1 0.38 8.2E-06 44.7 7.4 36 115-150 169-204 (354)
270 PRK05867 short chain dehydroge 93.1 0.88 1.9E-05 39.1 9.5 34 114-148 7-41 (253)
271 PRK06349 homoserine dehydrogen 93.1 0.65 1.4E-05 44.3 9.4 21 117-137 4-24 (426)
272 TIGR02371 ala_DH_arch alanine 93.1 0.59 1.3E-05 43.0 8.8 75 115-216 127-202 (325)
273 TIGR01373 soxB sarcosine oxida 93.0 0.2 4.3E-06 46.5 5.8 38 116-153 30-68 (407)
274 PRK03369 murD UDP-N-acetylmura 93.0 0.28 6.1E-06 47.4 6.9 88 115-235 11-98 (488)
275 TIGR01505 tartro_sem_red 2-hyd 93.0 0.5 1.1E-05 42.2 8.0 32 118-150 1-32 (291)
276 PRK05866 short chain dehydroge 92.9 0.85 1.8E-05 40.7 9.5 34 114-148 38-72 (293)
277 PF03447 NAD_binding_3: Homose 92.9 0.48 1E-05 36.5 6.9 27 123-149 1-31 (117)
278 PRK06194 hypothetical protein; 92.9 0.98 2.1E-05 39.4 9.6 33 115-148 5-38 (287)
279 PRK15438 erythronate-4-phospha 92.8 0.16 3.4E-06 48.1 4.7 35 113-148 113-147 (378)
280 PRK07530 3-hydroxybutyryl-CoA 92.8 0.18 4E-06 45.1 5.0 33 116-149 4-36 (292)
281 PRK14982 acyl-ACP reductase; P 92.8 0.17 3.8E-06 47.1 4.9 38 113-150 152-191 (340)
282 PRK08655 prephenate dehydrogen 92.7 0.25 5.5E-06 47.3 6.1 31 118-149 2-33 (437)
283 PTZ00188 adrenodoxin reductase 92.7 0.76 1.6E-05 45.1 9.4 95 115-217 38-137 (506)
284 cd05294 LDH-like_MDH_nadp A la 92.7 0.58 1.3E-05 42.7 8.2 32 118-149 2-35 (309)
285 PRK13394 3-hydroxybutyrate deh 92.7 0.95 2.1E-05 38.7 9.2 35 114-149 5-40 (262)
286 PRK15059 tartronate semialdehy 92.7 0.73 1.6E-05 41.7 8.7 105 118-235 2-115 (292)
287 PLN02240 UDP-glucose 4-epimera 92.7 2 4.3E-05 38.7 11.6 32 115-147 4-36 (352)
288 PF03721 UDPG_MGDP_dh_N: UDP-g 92.7 0.15 3.2E-06 43.2 4.0 41 118-160 2-42 (185)
289 PRK11064 wecC UDP-N-acetyl-D-m 92.7 0.7 1.5E-05 43.9 9.0 39 117-156 4-42 (415)
290 PRK05808 3-hydroxybutyryl-CoA 92.7 0.19 4E-06 44.8 4.8 32 117-149 4-35 (282)
291 PRK06523 short chain dehydroge 92.6 0.77 1.7E-05 39.4 8.5 76 114-193 7-84 (260)
292 TIGR01318 gltD_gamma_fam gluta 92.6 0.88 1.9E-05 43.7 9.7 34 115-149 140-173 (467)
293 PLN02780 ketoreductase/ oxidor 92.6 0.88 1.9E-05 41.4 9.3 61 116-197 53-114 (320)
294 TIGR01181 dTDP_gluc_dehyt dTDP 92.6 1.3 2.8E-05 38.7 10.0 31 118-148 1-33 (317)
295 PRK13403 ketol-acid reductoiso 92.6 0.17 3.6E-06 47.1 4.5 34 113-147 13-46 (335)
296 PLN02928 oxidoreductase family 92.6 0.18 4E-06 46.8 4.8 35 113-148 156-190 (347)
297 PRK12862 malic enzyme; Reviewe 92.5 0.46 9.9E-06 48.8 8.0 96 114-236 191-289 (763)
298 PLN02214 cinnamoyl-CoA reducta 92.5 2.2 4.8E-05 38.9 11.9 99 115-235 9-123 (342)
299 TIGR01377 soxA_mon sarcosine o 92.5 0.18 3.8E-06 46.0 4.6 33 118-151 2-34 (380)
300 TIGR01087 murD UDP-N-acetylmur 92.5 0.71 1.5E-05 43.5 8.8 29 119-148 2-30 (433)
301 PRK07478 short chain dehydroge 92.5 0.86 1.9E-05 39.1 8.7 33 115-148 5-38 (254)
302 TIGR01316 gltA glutamate synth 92.5 1.1 2.4E-05 42.7 10.2 34 115-149 132-165 (449)
303 PRK15461 NADH-dependent gamma- 92.5 0.63 1.4E-05 42.0 8.1 106 118-235 3-117 (296)
304 PRK11259 solA N-methyltryptoph 92.5 0.18 3.9E-06 45.9 4.6 34 117-151 4-37 (376)
305 PLN02166 dTDP-glucose 4,6-dehy 92.5 1.2 2.5E-05 42.6 10.3 35 114-149 118-153 (436)
306 COG1712 Predicted dinucleotide 92.4 0.24 5.2E-06 43.9 5.1 105 118-232 2-113 (255)
307 PF02423 OCD_Mu_crystall: Orni 92.4 0.73 1.6E-05 42.1 8.4 74 116-216 128-202 (313)
308 PRK12480 D-lactate dehydrogena 92.4 0.22 4.7E-06 46.0 5.0 36 113-149 143-178 (330)
309 PLN02350 phosphogluconate dehy 92.3 0.32 7E-06 47.5 6.3 113 117-235 7-129 (493)
310 PRK10537 voltage-gated potassi 92.3 0.8 1.7E-05 43.4 8.8 85 116-231 240-327 (393)
311 PRK15076 alpha-galactosidase; 92.3 0.68 1.5E-05 44.4 8.4 93 118-232 3-104 (431)
312 PF01494 FAD_binding_3: FAD bi 92.3 0.2 4.3E-06 44.4 4.5 32 118-150 3-34 (356)
313 PRK06949 short chain dehydroge 92.3 1.2 2.6E-05 38.0 9.3 34 114-148 7-41 (258)
314 PRK11559 garR tartronate semia 92.3 0.55 1.2E-05 41.9 7.4 32 118-150 4-35 (296)
315 PTZ00345 glycerol-3-phosphate 92.2 0.34 7.5E-06 45.5 6.2 92 115-228 10-115 (365)
316 PRK06125 short chain dehydroge 92.2 1.7 3.6E-05 37.4 10.2 34 115-149 6-40 (259)
317 PRK08339 short chain dehydroge 92.2 1.3 2.7E-05 38.7 9.5 35 114-149 6-41 (263)
318 PRK06567 putative bifunctional 92.2 1.2 2.6E-05 47.1 10.6 39 115-154 382-420 (1028)
319 PRK12409 D-amino acid dehydrog 92.1 0.22 4.8E-06 46.3 4.8 33 117-150 2-34 (410)
320 PRK09414 glutamate dehydrogena 92.1 1.3 2.8E-05 42.8 10.1 35 113-147 229-263 (445)
321 PRK00257 erythronate-4-phospha 92.1 0.21 4.6E-06 47.2 4.7 35 113-148 113-147 (381)
322 PRK00676 hemA glutamyl-tRNA re 92.1 0.23 4.9E-06 46.3 4.8 35 113-147 171-205 (338)
323 PRK14030 glutamate dehydrogena 92.1 1.1 2.3E-05 43.4 9.5 37 113-149 225-261 (445)
324 PRK00811 spermidine synthase; 92.1 0.64 1.4E-05 41.9 7.6 35 115-150 76-110 (283)
325 PLN02657 3,8-divinyl protochlo 92.1 1.5 3.3E-05 41.0 10.4 33 115-148 59-92 (390)
326 PRK09186 flagellin modificatio 92.1 0.96 2.1E-05 38.6 8.4 32 115-147 3-35 (256)
327 PRK12939 short chain dehydroge 92.0 1.7 3.7E-05 36.8 9.8 32 115-147 6-38 (250)
328 cd08281 liver_ADH_like1 Zinc-d 92.0 0.86 1.9E-05 41.8 8.5 33 116-148 192-224 (371)
329 cd05298 GH4_GlvA_pagL_like Gly 92.0 1.1 2.5E-05 43.0 9.6 93 118-232 2-102 (437)
330 PRK15181 Vi polysaccharide bio 92.0 1.8 3.9E-05 39.5 10.6 34 115-149 14-48 (348)
331 PRK03806 murD UDP-N-acetylmura 92.0 1 2.2E-05 42.6 9.2 88 116-235 6-93 (438)
332 PRK08057 cobalt-precorrin-6x r 92.0 1.4 3E-05 39.2 9.5 88 117-235 3-96 (248)
333 PLN02520 bifunctional 3-dehydr 92.0 0.23 5E-06 48.8 4.9 35 114-149 377-411 (529)
334 PRK06138 short chain dehydroge 92.0 1.5 3.2E-05 37.2 9.4 34 114-148 3-37 (252)
335 PRK04663 murD UDP-N-acetylmura 92.0 1 2.3E-05 42.7 9.2 88 117-235 8-96 (438)
336 TIGR00518 alaDH alanine dehydr 91.9 0.29 6.4E-06 45.8 5.4 36 113-149 164-199 (370)
337 PRK06181 short chain dehydroge 91.9 1.4 3E-05 37.9 9.3 31 117-148 2-33 (263)
338 PLN02545 3-hydroxybutyryl-CoA 91.9 0.26 5.7E-06 44.2 4.9 33 117-150 5-37 (295)
339 PRK05476 S-adenosyl-L-homocyst 91.9 0.25 5.4E-06 47.4 4.9 37 113-150 209-245 (425)
340 PRK07814 short chain dehydroge 91.9 1.2 2.6E-05 38.6 8.8 35 114-149 8-43 (263)
341 PRK06398 aldose dehydrogenase; 91.8 1 2.3E-05 39.0 8.5 74 114-193 4-79 (258)
342 cd00704 MDH Malate dehydrogena 91.8 0.24 5.2E-06 45.7 4.5 33 117-149 1-40 (323)
343 PRK06436 glycerate dehydrogena 91.8 0.31 6.8E-06 44.5 5.2 36 113-149 119-154 (303)
344 PRK06129 3-hydroxyacyl-CoA deh 91.8 0.24 5.3E-06 44.8 4.5 32 118-150 4-35 (308)
345 PF02056 Glyco_hydro_4: Family 91.8 0.39 8.4E-06 41.0 5.4 93 118-232 1-101 (183)
346 TIGR03366 HpnZ_proposed putati 91.7 1.3 2.7E-05 39.1 8.9 34 115-148 120-153 (280)
347 TIGR01082 murC UDP-N-acetylmur 91.7 0.65 1.4E-05 44.2 7.5 84 119-235 2-86 (448)
348 PLN02353 probable UDP-glucose 91.6 0.28 6E-06 47.6 5.0 42 118-160 3-45 (473)
349 TIGR02437 FadB fatty oxidation 91.6 0.28 6.1E-06 49.9 5.2 35 115-150 312-346 (714)
350 COG1064 AdhP Zn-dependent alco 91.6 1.6 3.4E-05 40.8 9.7 32 115-147 166-197 (339)
351 PRK08306 dipicolinate synthase 91.6 0.32 7E-06 44.2 5.1 37 113-150 149-185 (296)
352 COG1052 LdhA Lactate dehydroge 91.6 0.58 1.3E-05 43.3 6.8 36 113-149 143-178 (324)
353 PRK11730 fadB multifunctional 91.6 0.25 5.5E-06 50.2 4.9 35 115-150 312-346 (715)
354 PRK06487 glycerate dehydrogena 91.6 0.27 5.8E-06 45.1 4.6 35 113-148 145-179 (317)
355 PRK08410 2-hydroxyacid dehydro 91.6 0.29 6.2E-06 44.8 4.8 35 113-148 142-176 (311)
356 PRK08278 short chain dehydroge 91.6 1.6 3.4E-05 38.3 9.3 34 115-149 5-39 (273)
357 PF12847 Methyltransf_18: Meth 91.5 2.1 4.5E-05 31.8 8.8 77 116-214 2-78 (112)
358 PLN02740 Alcohol dehydrogenase 91.5 1.1 2.5E-05 41.3 8.8 35 115-149 198-232 (381)
359 PRK05472 redox-sensing transcr 91.5 0.8 1.7E-05 39.3 7.2 34 116-149 84-119 (213)
360 COG0665 DadA Glycine/D-amino a 91.4 0.31 6.8E-06 44.4 4.9 37 116-153 4-40 (387)
361 PRK12814 putative NADPH-depend 91.4 1.5 3.3E-05 44.0 10.1 34 115-149 192-225 (652)
362 PRK05876 short chain dehydroge 91.4 1.2 2.7E-05 39.1 8.6 34 115-149 5-39 (275)
363 TIGR01772 MDH_euk_gproteo mala 91.4 0.25 5.3E-06 45.4 4.2 33 118-150 1-35 (312)
364 cd00401 AdoHcyase S-adenosyl-L 91.4 0.32 6.9E-06 46.5 5.0 36 114-150 200-235 (413)
365 PRK12810 gltD glutamate syntha 91.3 1.7 3.8E-05 41.6 10.1 34 115-149 142-175 (471)
366 TIGR02441 fa_ox_alpha_mit fatt 91.3 0.24 5.2E-06 50.6 4.4 35 115-150 334-368 (737)
367 PTZ00317 NADP-dependent malic 91.3 0.84 1.8E-05 45.2 7.9 106 113-236 294-413 (559)
368 PRK14031 glutamate dehydrogena 91.3 0.96 2.1E-05 43.7 8.2 37 113-149 225-261 (444)
369 PRK07856 short chain dehydroge 91.3 1.2 2.6E-05 38.1 8.2 77 114-193 4-82 (252)
370 PLN02256 arogenate dehydrogena 91.3 0.32 6.9E-06 44.4 4.8 35 115-150 35-69 (304)
371 PRK12384 sorbitol-6-phosphate 91.3 2.6 5.6E-05 36.1 10.2 32 117-149 3-35 (259)
372 COG0287 TyrA Prephenate dehydr 91.2 0.48 1E-05 42.9 5.8 31 117-148 4-34 (279)
373 PLN02253 xanthoxin dehydrogena 91.2 1.7 3.7E-05 37.9 9.2 34 114-148 16-50 (280)
374 PRK11154 fadJ multifunctional 91.2 0.25 5.4E-06 50.1 4.4 35 115-150 308-343 (708)
375 PRK12429 3-hydroxybutyrate deh 91.1 2.1 4.5E-05 36.4 9.4 33 115-148 3-36 (258)
376 PRK07232 bifunctional malic en 91.1 0.73 1.6E-05 47.3 7.5 97 113-236 182-281 (752)
377 PRK06407 ornithine cyclodeamin 91.0 1.7 3.6E-05 39.7 9.2 76 116-217 117-193 (301)
378 PTZ00079 NADP-specific glutama 91.0 1 2.2E-05 43.6 8.1 37 113-149 234-270 (454)
379 PRK08264 short chain dehydroge 91.0 0.42 9.1E-06 40.4 5.0 36 115-150 5-41 (238)
380 TIGR02440 FadJ fatty oxidation 91.0 0.56 1.2E-05 47.6 6.6 34 115-149 303-337 (699)
381 PLN02989 cinnamyl-alcohol dehy 91.0 1.4 3E-05 39.4 8.5 31 116-147 5-36 (325)
382 PRK12320 hypothetical protein; 90.9 1.4 3.1E-05 44.8 9.4 30 118-148 2-32 (699)
383 PRK07589 ornithine cyclodeamin 90.9 1.6 3.4E-05 40.8 9.1 74 116-216 129-203 (346)
384 PRK12861 malic enzyme; Reviewe 90.9 0.78 1.7E-05 47.1 7.6 97 113-236 186-285 (764)
385 PRK09853 putative selenate red 90.9 1.3 2.9E-05 46.9 9.4 35 115-150 538-572 (1019)
386 TIGR03364 HpnW_proposed FAD de 90.9 0.34 7.4E-06 44.1 4.6 34 118-152 2-35 (365)
387 PRK00711 D-amino acid dehydrog 90.8 0.36 7.7E-06 44.7 4.7 32 118-150 2-33 (416)
388 PRK07453 protochlorophyllide o 90.8 1.5 3.2E-05 39.4 8.6 33 115-148 5-38 (322)
389 PRK05717 oxidoreductase; Valid 90.8 1.1 2.3E-05 38.6 7.4 78 114-193 8-91 (255)
390 PLN02662 cinnamyl-alcohol dehy 90.8 1.3 2.8E-05 39.3 8.1 32 116-148 4-36 (322)
391 TIGR02032 GG-red-SF geranylger 90.8 0.37 8E-06 41.8 4.5 32 118-150 2-33 (295)
392 PRK05479 ketol-acid reductoiso 90.7 0.34 7.5E-06 44.9 4.5 33 114-147 15-47 (330)
393 PRK06198 short chain dehydroge 90.7 1.1 2.3E-05 38.4 7.4 36 114-149 4-40 (260)
394 TIGR03206 benzo_BadH 2-hydroxy 90.7 1.7 3.6E-05 36.9 8.4 33 115-148 2-35 (250)
395 COG0111 SerA Phosphoglycerate 90.7 0.36 7.7E-06 44.6 4.5 35 113-148 139-173 (324)
396 PRK13984 putative oxidoreducta 90.7 1.6 3.4E-05 43.2 9.3 35 115-150 282-316 (604)
397 PRK06932 glycerate dehydrogena 90.6 0.36 7.7E-06 44.3 4.4 35 113-148 144-178 (314)
398 PLN02494 adenosylhomocysteinas 90.6 0.41 9E-06 46.5 5.0 37 114-151 252-288 (477)
399 PRK08773 2-octaprenyl-3-methyl 90.5 0.31 6.7E-06 45.0 4.0 33 117-150 7-39 (392)
400 PRK12831 putative oxidoreducta 90.4 1.3 2.9E-05 42.5 8.4 34 115-149 139-172 (464)
401 PRK07067 sorbitol dehydrogenas 90.4 1.2 2.5E-05 38.3 7.3 77 115-193 5-87 (257)
402 PRK06139 short chain dehydroge 90.4 1.9 4E-05 39.5 9.0 34 114-148 5-39 (330)
403 PRK11101 glpA sn-glycerol-3-ph 90.4 0.38 8.2E-06 47.2 4.7 35 117-152 7-41 (546)
404 PTZ00075 Adenosylhomocysteinas 90.4 0.45 9.9E-06 46.3 5.1 37 113-150 251-287 (476)
405 PRK07608 ubiquinone biosynthes 90.4 0.38 8.2E-06 44.1 4.4 34 117-151 6-39 (388)
406 PRK12748 3-ketoacyl-(acyl-carr 90.3 1.2 2.6E-05 38.3 7.3 35 114-149 3-40 (256)
407 PRK07494 2-octaprenyl-6-methox 90.3 0.33 7.2E-06 44.6 4.0 33 117-150 8-40 (388)
408 COG0493 GltD NADPH-dependent g 90.3 1.3 2.7E-05 43.0 8.1 95 113-215 120-217 (457)
409 PRK08664 aspartate-semialdehyd 90.2 1.5 3.1E-05 40.7 8.2 30 117-146 4-34 (349)
410 TIGR00696 wecB_tagA_cpsF bacte 90.2 1.4 3E-05 37.2 7.4 64 172-235 60-129 (177)
411 cd02191 FtsZ FtsZ is a GTPase 90.1 2.1 4.5E-05 39.2 9.0 36 118-153 2-39 (303)
412 TIGR00465 ilvC ketol-acid redu 90.1 0.41 8.9E-06 44.0 4.4 32 115-147 2-33 (314)
413 TIGR01692 HIBADH 3-hydroxyisob 90.1 0.83 1.8E-05 40.9 6.3 103 121-235 1-112 (288)
414 TIGR01988 Ubi-OHases Ubiquinon 90.0 0.4 8.6E-06 43.6 4.3 32 119-151 2-33 (385)
415 TIGR00936 ahcY adenosylhomocys 90.0 0.48 1E-05 45.2 4.9 37 114-151 193-229 (406)
416 TIGR01777 yfcH conserved hypot 90.0 2.5 5.5E-05 36.6 9.2 31 119-150 1-32 (292)
417 PRK06185 hypothetical protein; 90.0 0.43 9.2E-06 44.2 4.5 32 117-149 7-38 (407)
418 PRK06841 short chain dehydroge 90.0 0.59 1.3E-05 39.9 5.1 35 114-149 13-48 (255)
419 PRK12744 short chain dehydroge 90.0 2.4 5.1E-05 36.5 8.9 32 114-145 6-38 (257)
420 PRK08277 D-mannonate oxidoredu 90.0 1.4 3E-05 38.4 7.5 35 114-149 8-43 (278)
421 PLN02695 GDP-D-mannose-3',5'-e 89.9 2.6 5.6E-05 39.0 9.6 33 115-148 20-53 (370)
422 PRK01747 mnmC bifunctional tRN 89.9 0.39 8.4E-06 48.1 4.4 33 117-150 261-293 (662)
423 TIGR01758 MDH_euk_cyt malate d 89.9 0.39 8.4E-06 44.3 4.0 31 118-148 1-38 (324)
424 PRK11728 hydroxyglutarate oxid 89.9 0.46 1E-05 44.0 4.6 33 117-150 3-37 (393)
425 TIGR03201 dearomat_had 6-hydro 89.9 1.9 4.1E-05 39.2 8.5 32 116-148 167-198 (349)
426 TIGR01296 asd_B aspartate-semi 89.9 1.4 3.1E-05 40.8 7.8 86 118-235 1-89 (339)
427 PRK09310 aroDE bifunctional 3- 89.8 0.52 1.1E-05 45.7 5.0 35 114-149 330-364 (477)
428 COG0240 GpsA Glycerol-3-phosph 89.8 0.75 1.6E-05 42.7 5.8 88 117-226 2-91 (329)
429 PRK05335 tRNA (uracil-5-)-meth 89.8 0.42 9.1E-06 46.0 4.3 31 117-148 3-33 (436)
430 PLN02896 cinnamyl-alcohol dehy 89.8 1.5 3.2E-05 39.9 7.8 30 117-147 11-41 (353)
431 PRK06823 ornithine cyclodeamin 89.8 2.3 5E-05 39.0 9.0 76 115-217 127-203 (315)
432 PRK08265 short chain dehydroge 89.7 0.89 1.9E-05 39.4 6.0 36 114-150 4-40 (261)
433 TIGR02632 RhaD_aldol-ADH rhamn 89.7 2.4 5.2E-05 42.8 9.9 36 113-149 411-447 (676)
434 PRK11790 D-3-phosphoglycerate 89.7 0.53 1.1E-05 44.8 4.9 35 113-148 148-182 (409)
435 PRK05714 2-octaprenyl-3-methyl 89.7 0.38 8.2E-06 44.6 3.9 33 117-150 3-35 (405)
436 PRK06179 short chain dehydroge 89.7 2 4.3E-05 37.1 8.2 75 117-194 5-81 (270)
437 PRK08040 putative semialdehyde 89.7 1.9 4.1E-05 40.1 8.4 89 115-235 3-94 (336)
438 TIGR02469 CbiT precorrin-6Y C5 89.7 7 0.00015 29.2 11.2 92 116-229 20-111 (124)
439 TIGR02023 BchP-ChlP geranylger 89.7 0.44 9.5E-06 44.2 4.3 31 118-149 2-32 (388)
440 PRK07035 short chain dehydroge 89.6 0.83 1.8E-05 39.0 5.7 78 114-192 6-91 (252)
441 PRK12775 putative trifunctiona 89.6 2.9 6.2E-05 44.4 10.7 93 115-216 429-527 (1006)
442 PRK11579 putative oxidoreducta 89.6 2.1 4.7E-05 39.1 8.8 32 117-148 5-38 (346)
443 PRK07102 short chain dehydroge 89.6 2.6 5.7E-05 35.8 8.8 31 118-149 3-34 (243)
444 PLN00016 RNA-binding protein; 89.6 2.8 6.1E-05 38.7 9.5 102 115-235 51-161 (378)
445 cd01336 MDH_cytoplasmic_cytoso 89.6 0.51 1.1E-05 43.5 4.6 33 117-149 3-42 (325)
446 PLN02827 Alcohol dehydrogenase 89.5 1.5 3.3E-05 40.6 7.8 34 115-148 193-226 (378)
447 PRK06728 aspartate-semialdehyd 89.5 1.6 3.4E-05 40.9 7.8 88 116-235 5-96 (347)
448 PRK08507 prephenate dehydrogen 89.5 0.57 1.2E-05 41.6 4.7 32 118-149 2-34 (275)
449 PRK08324 short chain dehydroge 89.5 1.9 4.1E-05 43.4 8.9 35 114-149 420-455 (681)
450 KOG1201|consensus 89.5 0.98 2.1E-05 41.4 6.2 80 114-195 36-123 (300)
451 TIGR02028 ChlP geranylgeranyl 89.5 0.49 1.1E-05 44.3 4.5 31 118-149 2-32 (398)
452 PRK14806 bifunctional cyclohex 89.5 1.2 2.6E-05 45.0 7.6 33 117-149 4-37 (735)
453 PRK14618 NAD(P)H-dependent gly 89.4 0.53 1.1E-05 42.8 4.5 31 118-149 6-36 (328)
454 PRK08217 fabG 3-ketoacyl-(acyl 89.4 0.69 1.5E-05 39.2 5.0 36 114-150 3-39 (253)
455 PRK06184 hypothetical protein; 89.3 0.46 1E-05 45.7 4.3 32 117-149 4-35 (502)
456 PRK12778 putative bifunctional 89.2 2.7 5.8E-05 42.9 9.9 34 115-149 430-463 (752)
457 TIGR01832 kduD 2-deoxy-D-gluco 89.2 0.7 1.5E-05 39.3 5.0 35 114-149 3-38 (248)
458 PRK08628 short chain dehydroge 89.2 2.1 4.5E-05 36.7 7.9 35 114-149 5-40 (258)
459 PRK10309 galactitol-1-phosphat 89.2 2.8 6.1E-05 37.8 9.1 34 115-148 160-193 (347)
460 PRK06847 hypothetical protein; 89.2 0.61 1.3E-05 42.5 4.8 33 116-149 4-36 (375)
461 COG0654 UbiH 2-polyprenyl-6-me 89.1 0.52 1.1E-05 43.8 4.4 32 117-149 3-34 (387)
462 PRK08125 bifunctional UDP-gluc 89.1 3.3 7.2E-05 41.5 10.4 34 115-148 314-348 (660)
463 TIGR01984 UbiH 2-polyprenyl-6- 89.1 0.45 9.7E-06 43.5 3.9 31 119-150 2-33 (382)
464 PRK07825 short chain dehydroge 89.1 1.1 2.3E-05 39.0 6.1 76 115-193 4-85 (273)
465 PF13738 Pyr_redox_3: Pyridine 89.1 0.55 1.2E-05 38.8 4.1 34 113-147 164-197 (203)
466 KOG2250|consensus 89.1 2.4 5.3E-05 41.3 8.8 39 113-151 248-286 (514)
467 PLN02306 hydroxypyruvate reduc 89.1 0.56 1.2E-05 44.4 4.6 36 113-149 162-198 (386)
468 PRK08244 hypothetical protein; 89.0 0.5 1.1E-05 45.3 4.3 32 117-149 3-34 (493)
469 PRK07792 fabG 3-ketoacyl-(acyl 89.0 3.6 7.8E-05 36.8 9.6 33 114-147 10-43 (306)
470 PRK06753 hypothetical protein; 89.0 0.61 1.3E-05 42.5 4.7 31 118-149 2-32 (373)
471 PRK09126 hypothetical protein; 89.0 0.55 1.2E-05 43.1 4.4 33 117-150 4-36 (392)
472 PRK07523 gluconate 5-dehydroge 89.0 0.78 1.7E-05 39.4 5.1 35 114-149 8-43 (255)
473 cd08301 alcohol_DH_plants Plan 88.9 1.9 4.2E-05 39.4 7.9 35 115-149 187-221 (369)
474 PF13738 Pyr_redox_3: Pyridine 88.9 0.59 1.3E-05 38.6 4.1 30 120-149 1-30 (203)
475 PF13450 NAD_binding_8: NAD(P) 88.8 0.84 1.8E-05 32.2 4.3 28 121-149 1-28 (68)
476 COG0673 MviM Predicted dehydro 88.8 2.6 5.7E-05 37.8 8.6 34 116-149 3-39 (342)
477 PRK08013 oxidoreductase; Provi 88.8 0.53 1.1E-05 43.8 4.1 33 117-150 4-36 (400)
478 PRK08643 acetoin reductase; Va 88.7 2 4.3E-05 36.8 7.4 32 117-149 3-35 (256)
479 PRK00517 prmA ribosomal protei 88.7 7.4 0.00016 34.1 11.1 35 115-151 119-153 (250)
480 PRK07333 2-octaprenyl-6-methox 88.7 0.5 1.1E-05 43.5 3.9 32 118-149 3-35 (403)
481 PRK05671 aspartate-semialdehyd 88.7 2.2 4.8E-05 39.6 8.1 87 117-235 5-94 (336)
482 PRK05855 short chain dehydroge 88.7 2.5 5.5E-05 40.3 8.9 34 114-148 313-347 (582)
483 PLN02464 glycerol-3-phosphate 88.6 0.56 1.2E-05 47.0 4.4 36 117-153 72-107 (627)
484 TIGR01790 carotene-cycl lycope 88.6 0.57 1.2E-05 43.1 4.2 30 119-149 2-31 (388)
485 PRK08850 2-octaprenyl-6-methox 88.6 0.5 1.1E-05 43.9 3.9 32 117-149 5-36 (405)
486 PRK10217 dTDP-glucose 4,6-dehy 88.6 2.3 4.9E-05 38.5 8.1 31 118-148 3-34 (355)
487 PRK07889 enoyl-(acyl carrier p 88.6 2.8 6E-05 36.4 8.4 77 114-192 5-91 (256)
488 PRK06617 2-octaprenyl-6-methox 88.6 0.55 1.2E-05 43.3 4.1 32 118-150 3-34 (374)
489 PLN02986 cinnamyl-alcohol dehy 88.6 3.2 6.9E-05 37.0 8.9 28 116-144 5-33 (322)
490 cd08231 MDR_TM0436_like Hypoth 88.6 2.3 4.9E-05 38.6 8.1 34 115-148 177-210 (361)
491 TIGR01746 Thioester-redct thio 88.6 4.5 9.8E-05 35.9 9.9 30 118-147 1-32 (367)
492 COG1486 CelF Alpha-galactosida 88.6 1.4 2.9E-05 42.6 6.8 96 116-232 3-105 (442)
493 PLN00198 anthocyanidin reducta 88.6 2.4 5.1E-05 38.2 8.1 34 115-149 8-42 (338)
494 PRK07364 2-octaprenyl-6-methox 88.5 0.55 1.2E-05 43.5 4.1 33 117-150 19-51 (415)
495 PRK07236 hypothetical protein; 88.5 0.73 1.6E-05 42.6 4.9 34 116-150 6-39 (386)
496 COG0345 ProC Pyrroline-5-carbo 88.5 3.1 6.7E-05 37.5 8.7 78 118-227 3-83 (266)
497 PRK14573 bifunctional D-alanyl 88.5 2.2 4.7E-05 44.0 8.7 87 116-235 4-91 (809)
498 PRK08300 acetaldehyde dehydrog 88.5 1.4 3E-05 40.5 6.5 93 116-235 4-98 (302)
499 PRK12266 glpD glycerol-3-phosp 88.5 0.62 1.3E-05 45.3 4.5 35 117-152 7-41 (508)
500 TIGR02819 fdhA_non_GSH formald 88.4 1.3 2.9E-05 41.4 6.6 34 115-148 185-218 (393)
No 1
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=9.8e-36 Score=254.73 Aligned_cols=137 Identities=38% Similarity=0.555 Sum_probs=130.2
Q ss_pred ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587 99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS 176 (236)
Q Consensus 99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~ 176 (236)
.+|+||+++||.++ +++.++|+|+||||+||+++++|+++||++|+|+|+|.|+.+|| +|||+++.+|+|++|++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL-~rqfl~~~~diG~~Ka~a~ 80 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDL-GAQFLIPAEDLGQNRAEAS 80 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhC-CCCccccHHHcCchHHHHH
Confidence 47999999999988 46778999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 177 EARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 177 ~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+++|+++||+++|+.+...+++...+++++||+||+|.++.+.+..++++|+++++|+|+
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 81 LERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYA 140 (197)
T ss_pred HHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999998887666788999999999999999999999999999999974
No 2
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.8e-34 Score=246.98 Aligned_cols=136 Identities=29% Similarity=0.409 Sum_probs=127.4
Q ss_pred cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCC--CcCCChHHHH
Q psy9587 100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH--EDIGKNRAKS 175 (236)
Q Consensus 100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~--~dIGk~Kaea 175 (236)
+|+||+++||.++ +++.++|+|+||||+||+++++|+++||++|+|+|+|.++++|+ +|||+++. +|+|++|+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl-~rq~~~~~~~~~iG~~Ka~~ 79 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDL-GSNFFLDAEVSNSGMNRAAA 79 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcC-cccEecccchhhcCchHHHH
Confidence 5999999999987 56779999999999999999999999999999999999999999 99999998 8999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCC---cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 176 SEARAQNLNPNVEVTSNETKVD---EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~---~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++|+++||+++|+.+...+. +...+++++||+||+|.|+...+..++++|++++||+|+
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~ 143 (198)
T cd01485 80 SYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFIS 143 (198)
T ss_pred HHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999988774 234678999999999999999999999999999999984
No 3
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=2.8e-34 Score=246.33 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=128.9
Q ss_pred cchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 100 TLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 100 rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
||+||+++ ||.++ +++.++|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|| +|||+++++|+|++|+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL-~Rq~l~~~~diG~~Ka~~ 79 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNL-QRQILFTEEDVGRPKVEV 79 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccch-hhhhccChhhCCChHHHH
Confidence 69999998 99877 56778999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++|+++||+++++.+...+++.+ .++++++|+||+|+|+.+++.+++++|+++++|+|+
T Consensus 80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~ 141 (202)
T TIGR02356 80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLIS 141 (202)
T ss_pred HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999887655 568899999999999999999999999999999984
No 4
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=2.9e-34 Score=249.95 Aligned_cols=136 Identities=22% Similarity=0.314 Sum_probs=128.6
Q ss_pred cchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 100 TLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 100 rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
||+||+++ ||.++ +++.++|+|+||||+||++|++|+++|||+|+|+|+|.|+++|| +||+++..+|+|++|+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~ 79 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL-QRQILHTEADVGQPKAEA 79 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc-ccccccChhhCCChHHHH
Confidence 69999999 99877 56778999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++|+++||+++|+.++..++..+ .++++++|+||+|+|+..++..++++|+++++|+|+
T Consensus 80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 80 AAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999998886654 568899999999999999999999999999999984
No 5
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=5.4e-34 Score=251.39 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=129.6
Q ss_pred cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587 98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173 (236)
Q Consensus 98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka 173 (236)
..||+||+.+ ||.++ +++.++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|| +||++++.+|||++|+
T Consensus 10 ~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~Ka 88 (245)
T PRK05690 10 MLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL-QRQVLHDDATIGQPKV 88 (245)
T ss_pred HHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh-hhhhcCChhhCCChHH
Confidence 4689999976 88766 56778999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++++|+++||+++|+.+...+++.+ .+++++||+||+|+|+.+.+.+++++|+++++|+|.
T Consensus 89 ~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 89 ESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999988765 568899999999999999999999999999999984
No 6
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=5.5e-34 Score=256.11 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=130.3
Q ss_pred ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587 99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS 176 (236)
Q Consensus 99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~ 176 (236)
.+|.||+.++|.++ +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +||++++.+|||++|++++
T Consensus 8 ~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNL-nRQ~l~~~~diG~~Kve~a 86 (287)
T PRK08223 8 EAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNF-NRQAGAMMSTLGRPKAEVL 86 (287)
T ss_pred HHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcc-ccccCcChhHCCCcHHHHH
Confidence 57999999999887 56788999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCH--HHHHHHHHHHHHcCCcEEC
Q psy9587 177 EARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNP--NQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 177 ~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~--~~r~~In~~c~~~~ip~I~ 236 (236)
+++|+++||.++|++++..+++.+ .+++++||+||||+|++ .+++++|+.|++++||+|+
T Consensus 87 ~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 87 AEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALT 149 (287)
T ss_pred HHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999999998876 67899999999999986 8999999999999999984
No 7
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=1.2e-33 Score=248.59 Aligned_cols=137 Identities=16% Similarity=0.236 Sum_probs=128.4
Q ss_pred ccchhhhhcccC--cc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHH
Q psy9587 99 VTLTTLHTNWAG--SQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174 (236)
Q Consensus 99 ~rydrq~~l~g~--~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kae 174 (236)
.||+||+.+|+. ++ +++.++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|| +||+++..+|||++||+
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL-QRQVLHSDANIGQPKVE 81 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc-ccceeeeHhhCCCcHHH
Confidence 589999999874 33 57788999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 175 SSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 175 a~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+++++|+++||+++|+.+...+++.+ .++++++|+||+|+|+.+++.+|+++|+++++|+|+
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999888755 678899999999999999999999999999999984
No 8
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.4e-33 Score=259.23 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=131.3
Q ss_pred ccccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH
Q psy9587 97 HTVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR 172 (236)
Q Consensus 97 ~~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K 172 (236)
+..||+||+++ ||.++ +++.++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+++++|+|++|
T Consensus 5 ~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~K 83 (355)
T PRK05597 5 DIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL-HRQVIHSTAGVGQPK 83 (355)
T ss_pred HHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc-ccCcccChhHCCChH
Confidence 34689999999 99887 56778999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+++++++|+++||+++|+++...++..+ .+++++||+||+|+|+..+|..++++|++++||+|+
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVW 148 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999888655 678999999999999999999999999999999984
No 9
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=3.5e-33 Score=260.97 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=130.8
Q ss_pred cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587 98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173 (236)
Q Consensus 98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka 173 (236)
..||+||+.+ ||.++ +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++||
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL-~RQ~l~~~~dvG~~Ka 94 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL-QRQVIHGTSWVGKPKI 94 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccccc-CcCcccChHHCCCcHH
Confidence 4689999999 88876 56788999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++++|+++||.++|+.+...++..+ .+++++||+||+|+|+.++|..||++|++.++|+|+
T Consensus 95 ~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~ 158 (390)
T PRK07411 95 ESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVY 158 (390)
T ss_pred HHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999999999998765 678999999999999999999999999999999984
No 10
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-33 Score=241.55 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=129.4
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCC-hHHH
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGK-NRAK 174 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk-~Kae 174 (236)
..||+||+++||.++ +++.++|+|+||||+||+++++|+++|||+|+|+|+|.++.+|| +||+++..+|+|+ +|++
T Consensus 7 ~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~dvG~~~k~~ 85 (231)
T PRK08328 7 LERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNL-NRQILHWEEDLGKNPKPL 85 (231)
T ss_pred HHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhh-ccccccChhhcCchHHHH
Confidence 368999999999887 56778999999999999999999999999999999999999999 9999999999999 5999
Q ss_pred HHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 175 SSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 175 a~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+++++|+++||+++|+.+...+++.+ .++++++|+||+|+|+..++..++++|+++++|+|.
T Consensus 86 ~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~ 148 (231)
T PRK08328 86 SAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVH 148 (231)
T ss_pred HHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999998887665 568899999999999999999999999999999984
No 11
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.98 E-value=1.3e-32 Score=257.19 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=130.1
Q ss_pred cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587 98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173 (236)
Q Consensus 98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka 173 (236)
..||+||+.+ ||.++ +++.++|+||||||+|+++|++|+++|||+|+|+|+|.|+.+|| +|||+++.+|||++|+
T Consensus 20 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka 98 (392)
T PRK07878 20 VARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL-QRQVIHGQSDVGRSKA 98 (392)
T ss_pred HHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc-ccccccChhcCCChHH
Confidence 4689999988 98877 46778999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++++|+++||+++|+.+...++..+ .+++++||+||+|+|+..++.+||++|+++++|+|+
T Consensus 99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~ 162 (392)
T PRK07878 99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVW 162 (392)
T ss_pred HHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999999999888755 678999999999999999999999999999999984
No 12
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.98 E-value=1.3e-32 Score=255.56 Aligned_cols=138 Identities=14% Similarity=0.216 Sum_probs=130.8
Q ss_pred cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587 98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173 (236)
Q Consensus 98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka 173 (236)
..||+||+++ ||.++ +++.++|+|+||||+|++++++|+++|||+|+|+|+|.|+++|| +||++++.+|||++|+
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL-~RQ~l~~~~diG~~Ka 97 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNI-HRQILFGASDVGRPKV 97 (370)
T ss_pred HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccc-cccccCChhHCCCHHH
Confidence 4689999999 99877 56778999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++++|+++||+++|+.+...+++.+ .++++++|+||+|+|+..+|..||++|+++++|+|+
T Consensus 98 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~ 161 (370)
T PRK05600 98 EVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVW 161 (370)
T ss_pred HHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999999999998765 578999999999999999999999999999999984
No 13
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.98 E-value=1.4e-32 Score=247.38 Aligned_cols=133 Identities=34% Similarity=0.439 Sum_probs=125.9
Q ss_pred cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHH
Q psy9587 100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSE 177 (236)
Q Consensus 100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~ 177 (236)
.|+||+++||.++ +++.++|+|+||||+|+|+||||+++||++|+|+|+|.++.+|| +|||+++++|||++||++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL-~rqf~~~~~dIGk~Kaea~~ 79 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL-SSQFYLREEDIGKNRAEASQ 79 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhc-ccCccCChHHhCHHHHHHHH
Confidence 3899999999987 56778999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 178 ARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 178 ~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++|+++||+++|+++...+ +.+++++||+||+|.++...+..||++|++++||||.
T Consensus 80 ~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~ 135 (286)
T cd01491 80 ARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFIS 135 (286)
T ss_pred HHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999998775 3468899999999999999999999999999999984
No 14
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=2.9e-31 Score=236.94 Aligned_cols=137 Identities=17% Similarity=0.236 Sum_probs=127.5
Q ss_pred ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHH
Q psy9587 99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSS 176 (236)
Q Consensus 99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~ 176 (236)
.+|+||.++||.++ +++.++|+|+|+||+||++|++|+++|||+|+|+|+|.++.+|+ |||+++..+++|++|++++
T Consensus 11 ~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl-nRQ~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT-NRQIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc-ccccccChhhcChHHHHHH
Confidence 58999999999987 67889999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhCCCceEEEEecCCCcch-hhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 177 EARAQNLNPNVEVTSNETKVDEIS-EEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 177 ~~~L~~inp~v~I~~~~~~l~~~~-~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++.++||+++|+.+...++..+ .+++ .+||+||+|.|+...+..|+++|+++++|+|.
T Consensus 90 ~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~ 151 (268)
T PRK15116 90 AERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVT 151 (268)
T ss_pred HHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999988777555 4455 47999999999999999999999999999983
No 15
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=7e-31 Score=210.87 Aligned_cols=121 Identities=31% Similarity=0.478 Sum_probs=111.1
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
|.++|+|+|+|++|++++++|+++|+++|+|+|+|.|+++|+ +||++++.+|+|++|+++++++|+++||+++++.++.
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNL-NRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGC-CTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccc-ccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 357899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 195 KVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 195 ~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
.+++.+ .++++++|+||+|+|+...+..|+++|+++++|+|+
T Consensus 80 ~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 80 KIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFID 122 (135)
T ss_dssp HCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred ccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 996554 677899999999999999999999999999999984
No 16
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.97 E-value=3.5e-31 Score=243.46 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=127.4
Q ss_pred ccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCC--ChH
Q psy9587 99 VTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNR 172 (236)
Q Consensus 99 ~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIG--k~K 172 (236)
.||+||+++ ||.++ +++.++|+||||||+|+++|++|+++|||+|+|+|+|.|+.+|| +||++++++|+| ++|
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL-~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL-QRQQLYTEEDAKQKKPK 81 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccccc-CccccccHHHccCCccH
Confidence 589999987 67766 56778999999999999999999999999999999999999999 999999999985 899
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
|++++++|+++||+++|+++...++..+ .++++++|+||+|+|+.+++..||++|+++++|+|+
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999998887554 667899999999999999999999999999999985
No 17
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.97 E-value=3.4e-31 Score=243.57 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=128.6
Q ss_pred ccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCC--ChH
Q psy9587 99 VTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG--KNR 172 (236)
Q Consensus 99 ~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIG--k~K 172 (236)
.||+||+.+ ||.++ +++.++|+||||||+||++|++|+++|||+|+|+|+|.|+.+|| +||+++.++|+| ++|
T Consensus 3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL-~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNL-QRQQLYTESDVKNNLPK 81 (339)
T ss_pred chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHc-CccccccHHHhcCCCcH
Confidence 589999988 88877 56778999999999999999999999999999999999999999 999999999994 699
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+++++++|+++||.++++.+...+++.+ .+++++||+||+|+|+..++..|+++|++++||+|+
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~ 146 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIY 146 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999887765 678899999999999999999999999999999985
No 18
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.97 E-value=5.4e-31 Score=248.43 Aligned_cols=136 Identities=26% Similarity=0.380 Sum_probs=127.8
Q ss_pred cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHH
Q psy9587 100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSE 177 (236)
Q Consensus 100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~ 177 (236)
|||||+|+||..+ .+..++|+||||||+|+|++|||+++|||+|+|+|+|.|+.+|| +||||++.+|+|++||++++
T Consensus 2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL-~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDL-GNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhc-cccccCChhhcCcHHHHHHH
Confidence 7999999999988 46778999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHhhCCCceEEEEecCCCc---chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 178 ARAQNLNPNVEVTSNETKVDE---ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 178 ~~L~~inp~v~I~~~~~~l~~---~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+.|+++||+|+++.+.+.+.+ .+.+++++||+||+|.++......|+++|++.+||+|+
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~ 142 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLY 142 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999887653 34789999999999999999999999999999999984
No 19
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.97 E-value=1.6e-30 Score=228.09 Aligned_cols=117 Identities=19% Similarity=0.289 Sum_probs=111.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|||+||+||+++++|+++|+|+|+|+|+|.|+.+|| +|||||+.+|+|++|+++++++++++||+++|+.+...+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL-nRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL-NRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh-ccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 489999999999999999999999999999999999999 9999999999999999999999999999999999999885
Q ss_pred c---chhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 198 E---ISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 198 ~---~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+ .+.+++++||+||+|.|+.++|.+++++|+.+++|+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI 120 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLI 120 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 3 3467899999999999999999999999999999997
No 20
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=255.39 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=130.7
Q ss_pred ccccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHH
Q psy9587 97 HTVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174 (236)
Q Consensus 97 ~~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kae 174 (236)
...+|+||+.+|+.++ +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| |||++++.+|||++|++
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNL-NRQ~~~~~~dvG~~Kv~ 100 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNV-NRQFGARVPSFGRPKLA 100 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEeccccc-ccCcCcChhhCCCHHHH
Confidence 4578999999999876 57789999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCC--HHHHHHHHHHHHHcCCcEEC
Q psy9587 175 SSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCN--PNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 175 a~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~--~~~r~~In~~c~~~~ip~I~ 236 (236)
+++++|.++||.++|++++..+++.+ .++++++|+||+|+|+ ...+..|++.|++++||+|+
T Consensus 101 v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~ 165 (679)
T PRK14851 101 VMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVIT 165 (679)
T ss_pred HHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999998876 6789999999999997 56889999999999999984
No 21
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=1.2e-29 Score=228.89 Aligned_cols=117 Identities=24% Similarity=0.307 Sum_probs=111.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|| +|||||+.+|||++||++++++|+++||+++|+++...+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNL-nRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNL-NRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccc-CcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 489999999999999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHc--------CCcEE
Q psy9587 198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSK--------SKISL 235 (236)
Q Consensus 198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~--------~ip~I 235 (236)
+.+.+++++||+||+|.|+.++|.+|++.|.+. ++|+|
T Consensus 80 ~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI 125 (291)
T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLI 125 (291)
T ss_pred chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEE
Confidence 877889999999999999999999999998765 48987
No 22
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.96 E-value=2.4e-29 Score=203.39 Aligned_cols=118 Identities=31% Similarity=0.409 Sum_probs=112.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|+||||+|++++++|+++|+++|+|+|+|.++++|| +||++++.+|+|++|+++++++++++||+++++.+...+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl-~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL-NRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh-hccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 479999999999999999999999999999999999999 9999999999999999999999999999999999998877
Q ss_pred cch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 198 EIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 198 ~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
..+ .++++++|+||+|.|+.+.+..++++|+++++|+|.
T Consensus 80 ~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVID 119 (143)
T ss_pred hhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 644 678899999999999999999999999999999973
No 23
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.96 E-value=8.6e-30 Score=236.80 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=128.9
Q ss_pred cccchhhhhc--ccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587 98 TVTLTTLHTN--WAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173 (236)
Q Consensus 98 ~~rydrq~~l--~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka 173 (236)
..+|+||+.+ ||.++ +++.++|+|+||||+|++++++|+++||++|+|+|+|.|+.+|| +||++++.+|||++|+
T Consensus 113 ~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl-~Rq~l~~~~diG~~Ka 191 (376)
T PRK08762 113 DERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNL-QRQILHTEDRVGQPKV 191 (376)
T ss_pred HHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhh-ccccccchhhCCCcHH
Confidence 4689999988 88765 56778999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++++|+++||+++++.+...+++.+ .++++++|+||+|+|+..++.+++++|++++||+|+
T Consensus 192 ~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~ 255 (376)
T PRK08762 192 DSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVY 255 (376)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999999998887655 567899999999999999999999999999999984
No 24
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=1.3e-29 Score=221.97 Aligned_cols=123 Identities=21% Similarity=0.275 Sum_probs=114.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++.++|+|+||||+||+++++|+++|||+|+|+|+|.|+++|| |||+++..+|+|++|+++++++|+++||+++|+.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl-nRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~ 86 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL-NRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV 86 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh-cchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 45778999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ecCCCcch-hhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 193 ETKVDEIS-EEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 193 ~~~l~~~~-~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
...+++.+ .+++ .+||+||+|.|+...+..|+++|+++++|+|.
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~ 132 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVIS 132 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 99888655 4454 57999999999999999999999999999984
No 25
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=2e-29 Score=229.36 Aligned_cols=118 Identities=20% Similarity=0.381 Sum_probs=112.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|||+||+|||++++|+++|+|+|+|+|+|.++.+|| +|||+++++|||++||++++++|+++||+++|+++...+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNL-nRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNL-NRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhc-CcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 489999999999999999999999999999999999999 9999999999999999999999999999999999998887
Q ss_pred cc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 198 EI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 198 ~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+. +.+++++||+||+|.|+.++|..++++|+.++||+|.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~ 120 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIE 120 (312)
T ss_pred CccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
Confidence 63 4689999999999999999999999999999999983
No 26
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=9.6e-30 Score=260.04 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=129.1
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCC-----ceEEEeeCCcccccCCCCCccccCCCcCCC
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGK 170 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GV-----g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk 170 (236)
..||+||+++||.++ +++.++|+||||||+||+++++|+++|| |+|+|+|+|.|+.+|| ||||||+.+|||+
T Consensus 399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL-nRQfLf~~~dIGk 477 (1008)
T TIGR01408 399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL-NRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc-CcCcCCChhHcCc
Confidence 479999999999887 5677899999999999999999999999 8999999999999999 9999999999999
Q ss_pred hHHHHHHHHHHhhCCCceEEEEecCCCcc-----hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 171 NRAKSSEARAQNLNPNVEVTSNETKVDEI-----SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 171 ~Kaea~~~~L~~inp~v~I~~~~~~l~~~-----~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+||++++++++++||+++|+++...+.+. +.++++++|+||+|.|+..+|.++++.|+.+++|+|
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli 547 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLL 547 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999888653 256889999999999999999999999999999997
No 27
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.96 E-value=2.1e-29 Score=222.29 Aligned_cols=138 Identities=25% Similarity=0.264 Sum_probs=130.7
Q ss_pred cccchhhhhcccCcc----ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587 98 TVTLTTLHTNWAGSQ----SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173 (236)
Q Consensus 98 ~~rydrq~~l~g~~~----~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka 173 (236)
..||+||+.+|+... +++.++|+|+|+||+|++++++|+++|+|+++|+|+|.|+.+|| +||++++.+|+|++|+
T Consensus 8 ~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL-~rq~~~~~~dig~~Ka 86 (254)
T COG0476 8 IERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNL-QRQFLFTEADVGKPKA 86 (254)
T ss_pred HHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCccccccc-CceeeecccccCCcHH
Confidence 468999999988764 56788999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+++++.++++||.++++.+...++..+ .++++++|+|++|+|+..+|..+|++|++.++|++.
T Consensus 87 ~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~ 150 (254)
T COG0476 87 EVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVH 150 (254)
T ss_pred HHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEe
Confidence 999999999999999999999998877 588999999999999999999999999999999973
No 28
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=254.17 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=129.0
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
..+|+||+.+||.++ +++.++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|| |||++++.+|||++|+++
T Consensus 312 ~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNL-NRQ~l~~~~dIG~~Kaev 390 (989)
T PRK14852 312 DIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNL-NRQYGASIASFGRGKLDV 390 (989)
T ss_pred HHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEeccccc-ccccCCChhhCCChHHHH
Confidence 468999999999887 57789999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCH--HHHHHHHHHHHHcCCcEEC
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNP--NQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~--~~r~~In~~c~~~~ip~I~ 236 (236)
++++|+++||+++|+++...+++.+ .++++++|+||+|+|+. ..+..+++.|++++||+|.
T Consensus 391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ 454 (989)
T PRK14852 391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVIT 454 (989)
T ss_pred HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999998766 67899999999999974 5678888999999999984
No 29
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.96 E-value=7.5e-29 Score=214.48 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=121.8
Q ss_pred chhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHH
Q psy9587 101 LTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEA 178 (236)
Q Consensus 101 ydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~ 178 (236)
++++...||.++ +++.++|+|+||||+|++++++|+++|+++|+|+|.|.|+.+|| +||+++ .+|+|++|++++++
T Consensus 11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~~~-~~dvG~~Ka~~a~~ 88 (212)
T PRK08644 11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNL-NRQQYF-ISQIGMPKVEALKE 88 (212)
T ss_pred HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccc-cccEee-hhhCCChHHHHHHH
Confidence 444555577666 56778999999999999999999999999999999999999999 999866 78999999999999
Q ss_pred HHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc-CCcEEC
Q psy9587 179 RAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSK-SKISLF 236 (236)
Q Consensus 179 ~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~-~ip~I~ 236 (236)
+|+++||+++++.+...+++.+ .++++++|+||+|+|+..++..+++.|+++ ++|+|+
T Consensus 89 ~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~ 148 (212)
T PRK08644 89 NLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVA 148 (212)
T ss_pred HHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999888765 478899999999999999999999999999 999984
No 30
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=3.9e-29 Score=255.59 Aligned_cols=135 Identities=28% Similarity=0.411 Sum_probs=127.7
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
..+|+||+++||.++ +++.++|+|+||||+|+|+|+||+++|||+|+|+|+|.|+.+|| +||||++++|||++||++
T Consensus 4 ~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL-~rQf~~~~~dIGk~Kaea 82 (1008)
T TIGR01408 4 EALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDL-SSNFFLSEDDVGRNRAEA 82 (1008)
T ss_pred HhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhC-CCceecchHHcCchHHHH
Confidence 467999999999987 56778999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC--CcEEC
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKS--KISLF 236 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~--ip~I~ 236 (236)
++++|+++||+|+|+++...++ .+++++||+||+|.++...+..||++|++++ ||||+
T Consensus 83 ~~~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~ 142 (1008)
T TIGR01408 83 VVKKLAELNPYVHVSSSSVPFN---EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFIS 142 (1008)
T ss_pred HHHHHHHHCCCceEEEecccCC---HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999999999999999988774 4689999999999999999999999999999 88984
No 31
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=4.7e-29 Score=247.56 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=129.3
Q ss_pred ccccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHH
Q psy9587 97 HTVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173 (236)
Q Consensus 97 ~~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Ka 173 (236)
...||+||..+||.++ +++.++|+||||| +||.+|.+|+++|| |+|+|+|+|.|+.+|| ||| +++.+|+|++|+
T Consensus 86 ~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNL-nRq-~~~~~diG~~Kv 162 (722)
T PRK07877 86 RAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNL-NRV-PAGVFDLGVNKA 162 (722)
T ss_pred hHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEccccc-ccc-cCChhhcccHHH
Confidence 3489999999999887 5678899999997 99999999999996 9999999999999999 998 689999999999
Q ss_pred HHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 174 KSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 174 ea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++++++|.++||+++|+++...+++.+ .++++++|+||||+|++.++..||+.|++++||+|+
T Consensus 163 ~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~ 226 (722)
T PRK07877 163 VVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLM 226 (722)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999999999999877 678899999999999999999999999999999985
No 32
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.96 E-value=4e-29 Score=218.05 Aligned_cols=137 Identities=21% Similarity=0.298 Sum_probs=128.7
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
..+|.|..+|+|.++ +++.++|+|+|+|||||+++..|+++|+|+|+|+|.|.|+.+|+ |||.-....+||++|+++
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~-NRQi~A~~~~iGk~Kv~v 88 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT-NRQIHALLGDIGKPKVEV 88 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc-chhhHhhhhhcccHHHHH
Confidence 357888889999877 78999999999999999999999999999999999999999999 999888889999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcch-hhhc-CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEIS-EEFV-HGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~-~~~l-~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
++++++.+||+++|+.+...+++++ .+++ .+||+||||.|+...+..|..+|++++||+|
T Consensus 89 m~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vI 150 (263)
T COG1179 89 MKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVI 150 (263)
T ss_pred HHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999887 5554 5799999999999999999999999999997
No 33
>KOG2017|consensus
Probab=99.95 E-value=2.6e-29 Score=227.85 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=129.1
Q ss_pred ccccchhhhhccc--Ccc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH
Q psy9587 97 HTVTLTTLHTNWA--GSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR 172 (236)
Q Consensus 97 ~~~rydrq~~l~g--~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K 172 (236)
...||+||+-+-+ ..| +++.+.|+||||||+||.++.+|+.+|||+|.|+|.|.||.+|| +||.+++++.+|+.|
T Consensus 43 ei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNl-hRQVlh~ea~vg~~K 121 (427)
T KOG2017|consen 43 EILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNL-HRQVLHTEARVGMHK 121 (427)
T ss_pred HHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhH-HHHHhhhhhhhhhHH
Confidence 3579999996644 344 46778999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 173 AKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 173 aea~~~~L~~inp~v~I~~~~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
|++++..++++||.++|+.+.+.++..+ .+++++||+|.||+||+.+|++|++.|...|+|+|
T Consensus 122 a~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLV 185 (427)
T KOG2017|consen 122 AESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLV 185 (427)
T ss_pred HHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCccc
Confidence 9999999999999999999999998877 78899999999999999999999999999999987
No 34
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.95 E-value=3e-28 Score=229.84 Aligned_cols=117 Identities=25% Similarity=0.355 Sum_probs=111.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC-----ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV-----KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV-----g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+|+||||||+|||++++|+++|| |+|+|+|+|.|+.+|| +|||+|+.+|||++||+++++.++++||+++|+++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNL-nRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNL-NRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccccc-CcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 48999999999999999999999 9999999999999999 99999999999999999999999999999999999
Q ss_pred ecCCCcch-----hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 193 ETKVDEIS-----EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 193 ~~~l~~~~-----~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
...+.+.+ .++++++|+||+|.|+.++|..+++.|+.+++|+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli 127 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLL 127 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 98886532 46889999999999999999999999999999997
No 35
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.95 E-value=7.1e-28 Score=217.45 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=108.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCc--CCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHED--IGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~d--IGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
+|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|| +||++|..+| +|++||++++++|+++||+++++.+...
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL-~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNP-VRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccC-CcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 489999999999999999999999999999999999999 9999999999 9999999999999999999999998755
Q ss_pred C-----------------Ccch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 196 V-----------------DEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 196 l-----------------~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+ +..+ .++++++|+||+|+|+.++|+.++.+|..+++|+|
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I 137 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVI 137 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEE
Confidence 4 1112 56789999999999999999999999999999987
No 36
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=2.3e-27 Score=199.37 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=108.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|+||||+|++++++|+++|+++|+|+|.|.++.+|| +||++ ..+|+|++|+++++++|+++||+++++.+...++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl-~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNL-NRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcch-hcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 489999999999999999999999999999999999999 99985 4689999999999999999999999999999887
Q ss_pred cch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc-CCcEEC
Q psy9587 198 EIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSK-SKISLF 236 (236)
Q Consensus 198 ~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~-~ip~I~ 236 (236)
..+ .++++++|+||+|+|+...+..+++.|.+. ++|+|+
T Consensus 79 ~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~ 119 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVC 119 (174)
T ss_pred hhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 755 578999999999999999999888887777 999985
No 37
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=5.2e-27 Score=228.57 Aligned_cols=122 Identities=22% Similarity=0.343 Sum_probs=114.0
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcC---CChHHHHHHHHHHhhCCCceE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNRAKSSEARAQNLNPNVEV 189 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dI---Gk~Kaea~~~~L~~inp~v~I 189 (236)
+++..+|+||||||+||++|++|+++|||+|+|+|+|.|+.+|| +||++|+.+|+ |++||++++++|+++||++++
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL-~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i 413 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP-VRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQA 413 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc-ccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEE
Confidence 67889999999999999999999999999999999999999999 99999999999 999999999999999999999
Q ss_pred EEEecCC-------Ccc----------h-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 190 TSNETKV-------DEI----------S-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 190 ~~~~~~l-------~~~----------~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+.+...+ ++. + .++++++|+||+|+|+.++|+.++.+|..+++|+|
T Consensus 414 ~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI 477 (664)
T TIGR01381 414 TGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI 477 (664)
T ss_pred EEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 9987763 331 2 46789999999999999999999999999999998
No 38
>PRK06153 hypothetical protein; Provisional
Probab=99.93 E-value=5.3e-26 Score=211.04 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=112.0
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCcc-ccCCCcCCC--hHHHHHHHHHHhhCCCceE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF-LAPHEDIGK--NRAKSSEARAQNLNPNVEV 189 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~-l~~~~dIGk--~Kaea~~~~L~~inp~v~I 189 (236)
+++.++|+||||||+||.++..|+++||++|+|+|+|.|+++|| +||+ ++..+|+|+ +|++++++++.++++ .|
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNL-nRQ~gaf~~~DvGk~~~KVevaa~rl~~in~--~I 249 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNA-FRSPGAASIEELREAPKKVDYFKSRYSNMRR--GI 249 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccc-ccccccCCHhHcCCcchHHHHHHHHHHHhCC--eE
Confidence 56788999999999999999999999999999999999999999 9998 568899999 999999999999998 56
Q ss_pred EEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 190 TSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 190 ~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+.+...+++.+...+++||+||+|+|+.++|..|+++|.+++||+|
T Consensus 250 ~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~I 295 (393)
T PRK06153 250 VPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFI 295 (393)
T ss_pred EEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 7788888777766789999999999999999999999999999997
No 39
>KOG2014|consensus
Probab=99.93 E-value=3e-26 Score=204.64 Aligned_cols=137 Identities=35% Similarity=0.485 Sum_probs=131.4
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
...||||+||||... .++.++|+|+|.+|+|+|++|||+++|||+++++|+-.|.++++ +.|||...+++|+.|+++
T Consensus 11 ~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~-~~qFli~~~~vg~~raea 89 (331)
T KOG2014|consen 11 IALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDV-GAQFLISASSVGQTRAEA 89 (331)
T ss_pred HHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcC-CceeEEchhhhchHHHHH
Confidence 456999999999877 46778999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
..++++.+||.|+|....+.+.+.+.+++.+||+||....+.+....+|++||+++|+|+
T Consensus 90 s~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~ 149 (331)
T KOG2014|consen 90 SLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFY 149 (331)
T ss_pred HHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEE
Confidence 999999999999999999999999999999999999999999999999999999999986
No 40
>KOG2013|consensus
Probab=99.93 E-value=1.8e-26 Score=216.15 Aligned_cols=121 Identities=21% Similarity=0.364 Sum_probs=115.9
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
++..+||||||||||||++|+|++.|+++|+|||-|+|+.||| ||||||+.++||++||.++++..++.||.+++..++
T Consensus 10 i~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNL-NRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yh 88 (603)
T KOG2013|consen 10 IKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNL-NRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYH 88 (603)
T ss_pred hccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccch-hhhheeehhhcCchHHHHHHHHHHHhCCCCceEecc
Confidence 3567899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCCcc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 194 TKVDEI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 194 ~~l~~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
..+.+. +.+++.+||+|+.|.||..+|..+|++|.....|+|
T Consensus 89 anI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLI 132 (603)
T KOG2013|consen 89 ANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLI 132 (603)
T ss_pred ccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCce
Confidence 998764 578999999999999999999999999999999987
No 41
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.93 E-value=8.6e-26 Score=199.04 Aligned_cols=113 Identities=29% Similarity=0.402 Sum_probs=100.6
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
..+|+||+++||.++ +++.++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+|| +|||+++. ++|++|+++
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL-~RQfl~~~-dvGk~KAea 83 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADV-CTNYLMQG-EAGGTRGAR 83 (287)
T ss_pred HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhh-cccccccc-ccCCcHHHH
Confidence 468999999999988 56778999999999999999999999999999999999999999 99999997 689999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCH
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNP 217 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~ 217 (236)
++++|+++||+++|+.+...+++. ++|++||.+..+.
T Consensus 84 Aa~~L~eLNP~V~V~~i~~rld~~-----n~fqvvV~~~~~l 120 (287)
T PTZ00245 84 ALGALQRLNPHVSVYDAVTKLDGS-----SGTRVTMAAVITE 120 (287)
T ss_pred HHHHHHHHCCCcEEEEcccccCCc-----CCceEEEEEcccH
Confidence 999999999999999998877653 3566666555443
No 42
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.93 E-value=4.1e-25 Score=189.66 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=106.5
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++..+|+|+||||+|+++|++|+++|+++++|+|.|.|+++|| +||+ +..+|+|++|+++++++|+++||.++++.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~ 95 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNL-NRQQ-YKASQVGEPKTEALKENISEINPYTEIEAY 95 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccc-cccc-CChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 46778999999999999999999999999999999999999999 9996 566899999999999999999999999999
Q ss_pred ecCCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHH-HHcCCc
Q psy9587 193 ETKVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFC-RSKSKI 233 (236)
Q Consensus 193 ~~~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c-~~~~ip 233 (236)
...+++.+ .++++++|+||+|+|+..++..+.+.| +..+.+
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~ 138 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDK 138 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCC
Confidence 99998766 567899999999999999998865554 454443
No 43
>KOG2015|consensus
Probab=99.91 E-value=9.3e-25 Score=196.91 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=109.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
...+|+|+|+||+|||++|+|+++|++.++++|.|+++.+|| ||||+|++.|+|++||+++|+.+.+..|.+.|..+..
T Consensus 39 ~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNL-NRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~ 117 (422)
T KOG2015|consen 39 QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNL-NRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQ 117 (422)
T ss_pred hhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccc-hhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeec
Confidence 346899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~ 229 (236)
++.+...+++++||+||++.|+.+.|++||.+..+
T Consensus 118 kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~ 152 (422)
T KOG2015|consen 118 KIQDKPISFYKRFDLIICGLDSIEARRWINGMLVR 152 (422)
T ss_pred chhcCCHHHHhhhceEEecccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999998765
No 44
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.91 E-value=3.2e-24 Score=189.26 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=100.4
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCC-----c-----eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGV-----K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN 184 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GV-----g-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in 184 (236)
+..+|+||||||+||+++++|+++|+ | +|+|+|+|.|+++|| +|| +|...|||++||+++++++.+++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL-nRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV-GRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh-hcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 55789999999999999999999973 4 899999999999999 999 57779999999999999999988
Q ss_pred CCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587 185 PNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229 (236)
Q Consensus 185 p~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~ 229 (236)
.++|+++...+.+ .+++.++|+||+|+|+.++|..|++.|.+
T Consensus 88 -~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 -GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEG 129 (244)
T ss_pred -CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 8999999988876 23467899999999999999999999988
No 45
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.89 E-value=1.1e-23 Score=192.32 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=111.4
Q ss_pred cccchhhhhccc---Cc-c--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh
Q psy9587 98 TVTLTTLHTNWA---GS-Q--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 171 (236)
Q Consensus 98 ~~rydrq~~l~g---~~-~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~ 171 (236)
..||.||+.+.+ .. + +++.++|+ |||+|+.++.+|++ |||+|+|+|+|.|+.+|| + ++|+.+|||++
T Consensus 52 ~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL-~--~L~~~~diG~~ 124 (318)
T TIGR03603 52 LITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAE-I--DLYSKEFILKK 124 (318)
T ss_pred HHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhH-H--HHhChhhcCcH
Confidence 469999998844 33 3 45667777 99999999999999 999999999999999999 7 89999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHH--HHHHHHHcCCcEEC
Q psy9587 172 RAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIK--IDDFCRSKSKISLF 236 (236)
Q Consensus 172 Kaea~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~--In~~c~~~~ip~I~ 236 (236)
|+++++++|.++||.++++.. .++++++|+||+|+|++.+|.. +|++|.+.++|+|+
T Consensus 125 K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~ 183 (318)
T TIGR03603 125 DIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTI 183 (318)
T ss_pred HHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEE
Confidence 999999999999999999763 3578999999999999999966 99999999999984
No 46
>KOG2018|consensus
Probab=99.89 E-value=1.2e-23 Score=189.35 Aligned_cols=135 Identities=15% Similarity=0.181 Sum_probs=123.7
Q ss_pred cchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHH
Q psy9587 100 TLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSE 177 (236)
Q Consensus 100 rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~ 177 (236)
.+.|....+|.++ +++.+-|.||||||+||+++..|+++|+++|.|+|+|-|+.+.| |||....-.|||.||+.+++
T Consensus 56 qLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSL-NrHs~Atl~DVG~PK~~clk 134 (430)
T KOG2018|consen 56 QLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSL-NRHSCATLADVGTPKVMCLK 134 (430)
T ss_pred HHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhh-hhhhhhhHhhcCCchHHHHH
Confidence 3556667788777 67888899999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHhhCCCceEEEEecCCCcch-hhh-cCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 178 ARAQNLNPNVEVTSNETKVDEIS-EEF-VHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 178 ~~L~~inp~v~I~~~~~~l~~~~-~~~-l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+.++++.|+++|.+...-++..+ .++ +.+.|+|+||.||..+...|-++|+.+|+++|
T Consensus 135 kh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vi 194 (430)
T KOG2018|consen 135 KHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVI 194 (430)
T ss_pred HHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceE
Confidence 99999999999999998887765 444 46799999999999999999999999999997
No 47
>KOG2012|consensus
Probab=99.89 E-value=1e-23 Score=207.12 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=126.8
Q ss_pred ccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCc-----eEEEeeCCcccccCCCCCccccCCCcCCCh
Q psy9587 99 VTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVK-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 171 (236)
Q Consensus 99 ~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~ 171 (236)
-|||-|++++|... ++..+++.+||+|+||||++||++++|+| +|++.|.|.||.||| ||||||++.|||++
T Consensus 411 sRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNL-nRQFLFR~~dVgk~ 489 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNL-NRQFLFRPWDVGKP 489 (1013)
T ss_pred CccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccc-cceeeccccccCch
Confidence 58999999999876 56678999999999999999999999995 799999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCcc-----hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 172 RAKSSEARAQNLNPNVEVTSNETKVDEI-----SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 172 Kaea~~~~L~~inp~v~I~~~~~~l~~~-----~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
|++++++....+||.++|+++..++... +.+|+.+.|+|+.+.||..+|.++++.|..+.+|++
T Consensus 490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLL 558 (1013)
T KOG2012|consen 490 KSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLL 558 (1013)
T ss_pred HHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchh
Confidence 9999999999999999999998887653 477899999999999999999999999999999974
No 48
>KOG2016|consensus
Probab=99.87 E-value=9.6e-23 Score=189.63 Aligned_cols=139 Identities=27% Similarity=0.366 Sum_probs=127.7
Q ss_pred ccccchhhhhcccCccc--cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHH
Q psy9587 97 HTVTLTTLHTNWAGSQS--YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174 (236)
Q Consensus 97 ~~~rydrq~~l~g~~~~--lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kae 174 (236)
+..+||||+|+||..|| +..++|+++|||++||+++|||++.|||.|+++|+..|+.+|+ +.+|+...+++|++||+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~-g~nF~~~~~~~GksrA~ 84 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDL-GNNFFLDAKSIGKSRAE 84 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecch-hhHHHHHHHhhchhHHH
Confidence 45789999999998874 6778999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEecCCC---cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 175 SSEARAQNLNPNVEVTSNETKVD---EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 175 a~~~~L~~inp~v~I~~~~~~l~---~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
+..+.|+++||+|.-+...+..+ ..+++++++|++||.+.-+.++...+.++|+.+++|++.
T Consensus 85 a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~ 149 (523)
T KOG2016|consen 85 ATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLL 149 (523)
T ss_pred HHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEE
Confidence 99999999999999777665543 346889999999999999999999999999999999974
No 49
>KOG2012|consensus
Probab=99.86 E-value=3.3e-22 Score=196.62 Aligned_cols=134 Identities=34% Similarity=0.443 Sum_probs=127.3
Q ss_pred cccchhhhhcccCcc--ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHH
Q psy9587 98 TVTLTTLHTNWAGSQ--SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS 175 (236)
Q Consensus 98 ~~rydrq~~l~g~~~--~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea 175 (236)
...|+||+-+.|.+. ++..++|+|.|+||+|.||||||+++||+++||.|...+..+|| ..||+++++|||+++|++
T Consensus 17 E~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DL-ssqf~L~E~DigknRA~a 95 (1013)
T KOG2012|consen 17 ESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDL-SSQFYLSEEDIGKNRAEA 95 (1013)
T ss_pred hhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhh-ccceeeeHHhcCCchHHH
Confidence 356999999999876 77889999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 176 SEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 176 ~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
..++|+++|++|.|.++++.++ .+++++|++||.+..+.+....|+++||+++|.||
T Consensus 96 s~~~LaeLN~yV~V~v~t~~~~---~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi 152 (1013)
T KOG2012|consen 96 SVEKLAELNNYVPVVVLTGPLT---EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFI 152 (1013)
T ss_pred HHHHHHHhhcceeeEEecCccc---HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEE
Confidence 9999999999999999998874 57999999999999999999999999999999987
No 50
>KOG2336|consensus
Probab=99.74 E-value=7e-18 Score=150.45 Aligned_cols=118 Identities=13% Similarity=0.261 Sum_probs=104.6
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++...|.|||.||+||-+|..|.++|+|++.|+|.|.|+..|. ||- ||.++..|.+|++++...|..+||+|.++++
T Consensus 79 rIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANM-NRL-Ff~P~QaGlsKv~AA~~TL~~iNPDV~iE~h 156 (422)
T KOG2336|consen 79 RIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANM-NRL-FFQPDQAGLSKVDAAVQTLAEINPDVVIEVH 156 (422)
T ss_pred HHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcc-ccc-ccCcccccchHHHHHHHHHHhcCCCeEEEEe
Confidence 56778899999999999999999999999999999999999999 997 7889999999999999999999999999999
Q ss_pred ecCCCcc-h----------hhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCC
Q psy9587 193 ETKVDEI-S----------EEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSK 232 (236)
Q Consensus 193 ~~~l~~~-~----------~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~i 232 (236)
+..++.- + ..+. +..|+|..|.||+++|..+|..|-+.+.
T Consensus 157 n~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q 209 (422)
T KOG2336|consen 157 NYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQ 209 (422)
T ss_pred ecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhh
Confidence 8877531 1 1111 3489999999999999999999987653
No 51
>KOG2337|consensus
Probab=99.58 E-value=3.2e-15 Score=141.98 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=104.4
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcC---CChHHHHHHHHHHhhCCCceEE
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI---GKNRAKSSEARAQNLNPNVEVT 190 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dI---Gk~Kaea~~~~L~~inp~v~I~ 190 (236)
++..++++.|+|.+||.||++|+..||++||++|...|+.+|- .||.+|+.+|. |++||++++++|++++|.++-+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNP-VRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~at 416 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNP-VRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEAT 416 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccch-hhhhhhhhhhhhccCCcchHHHHHHHHHhCcccccc
Confidence 4557889999999999999999999999999999999999999 99999999996 5999999999999999999877
Q ss_pred EEecCCC-------cc-----------hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 191 SNETKVD-------EI-----------SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 191 ~~~~~l~-------~~-----------~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.+...+- +. -++++++.|+|+..+|+.++|++-.=+|...++-+|
T Consensus 417 G~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivI 479 (669)
T KOG2337|consen 417 GYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVI 479 (669)
T ss_pred ceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEe
Confidence 7654331 11 145788999999999999999988877777666554
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.35 E-value=2.6e-12 Score=125.33 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=100.1
Q ss_pred cccchhhhhcccCc---c-----ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCC
Q psy9587 98 TVTLTTLHTNWAGS---Q-----SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIG 169 (236)
Q Consensus 98 ~~rydrq~~l~g~~---~-----~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIG 169 (236)
..||..|+..+... + ..+..+|+|+|.|++|+.++.+|+.+|+++|+.+|.|.+ .+|+ +| ||
T Consensus 103 lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNl-nR--------Ig 172 (637)
T TIGR03693 103 LDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHAL-DR--------IH 172 (637)
T ss_pred HHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhh-hH--------HH
Confidence 36888888666532 2 236689999999999999999999999999999999999 9999 99 77
Q ss_pred ChHHHHHHHHHHhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCC--CHHHHHHHHHHHHHcCCcEE
Q psy9587 170 KNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC--NPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 170 k~Kaea~~~~L~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I 235 (236)
+. ++.+++ .||.++++.++..-.+.-.+.++++|+||+.+| +.....++|+.|.+.|+|+|
T Consensus 173 El-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 173 EL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred HH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeE
Confidence 75 544444 999999999876433334778999999999998 45678999999999995443
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.84 E-value=1.5e-08 Score=84.61 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=95.4
Q ss_pred ceEEEEcCChhHHHHHHHHH---HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 117 YVYSTGPLTRVGAEIAKNII---LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La---~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
-.|.++|||.+|--++-+|. +.|+.+|.++|+..|++.|+-.| .-...+|.+|++.+ ++|.+-.+.-+|++.+
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr---r~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~p 94 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR---RLGAKVGEYKVDFI-KRLGRVHFGRRVEAFP 94 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH---HhCCCcchhHHHHH-HHhCcCCCCceeeccc
Confidence 36889999999999999998 67899999999999999998122 22356999999975 5677788888999999
Q ss_pred cCCCcchhhhcCCCcEEEEcC---CCHHHHHHHHHHHHHcCCcEE
Q psy9587 194 TKVDEISEEFVHGFDVVIATS---CNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~---d~~~~r~~In~~c~~~~ip~I 235 (236)
+.++..|..++.+ |+|+.|. |..+.-..|.++|++.|+.-|
T Consensus 95 E~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti 138 (217)
T COG4015 95 ENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI 138 (217)
T ss_pred ccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe
Confidence 9999988888877 8887774 677888899999999998654
No 54
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.16 E-value=1.9e-05 Score=74.44 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=66.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV 196 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l 196 (236)
.+|+|+|||+||+.+|.+|++.|.++|++.|...-. + +++...... ++++..-+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~--------------------~----~~i~~~~~~-~v~~~~vD~ 56 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEK--------------------C----ARIAELIGG-KVEALQVDA 56 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHH--------------------H----HHHHhhccc-cceeEEecc
Confidence 368999999999999999999999999998843211 1 112111111 455554444
Q ss_pred Ccc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 197 DEI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 197 ~~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.+. ..++++++|+||.|....... .+-+.|.+.|++++
T Consensus 57 ~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yv 96 (389)
T COG1748 57 ADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYV 96 (389)
T ss_pred cChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEE
Confidence 332 257889999999998877666 77889999999875
No 55
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.07 E-value=2.3e-05 Score=70.76 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=55.2
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
.+.++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++.+++.+...++.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~--------------------~~ka~~la~~l~~~~~~~~~~~~~ 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD--------------------PARAAALADELNARFPAARATAGS 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC--------------------HHHHHHHHHHHHhhCCCeEEEecc
Confidence 355789999999999999999999999999998743 247788888887776654432221
Q ss_pred cCCCcchhhhcCCCcEEEEcC
Q psy9587 194 TKVDEISEEFVHGFDVVIATS 214 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~ 214 (236)
. ..+.+.++|+||.|+
T Consensus 185 ~-----~~~~~~~aDiVInaT 200 (284)
T PRK12549 185 D-----LAAALAAADGLVHAT 200 (284)
T ss_pred c-----hHhhhCCCCEEEECC
Confidence 1 122346677777774
No 56
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.04 E-value=4.5e-05 Score=65.64 Aligned_cols=91 Identities=10% Similarity=0.069 Sum_probs=64.2
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++.++|+|||.|.+|...++.|...| .++++++++ + ... +.++.+.-.+...
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~------~-~~~-------------------l~~l~~~~~i~~~ 59 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPE------L-TEN-------------------LVKLVEEGKIRWK 59 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC------C-CHH-------------------HHHHHhCCCEEEE
Confidence 457789999999999999999999999 579998753 2 111 1111111123333
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS 234 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~ 234 (236)
...+. ...+.++|+||.|+++.+....|.+.|. .++++
T Consensus 60 ~~~~~---~~~l~~adlViaaT~d~elN~~i~~~a~-~~~lv 97 (202)
T PRK06718 60 QKEFE---PSDIVDAFLVIAATNDPRVNEQVKEDLP-ENALF 97 (202)
T ss_pred ecCCC---hhhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcE
Confidence 33332 3457889999999999999999999994 46654
No 57
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.99 E-value=2e-05 Score=60.59 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=62.6
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++.++|+|||.|.+|..-++.|..+| .+++++.++. + .. . ..++ ..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~--~~-~--------------------------~~i~--~~ 50 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E--FS-E--------------------------GLIQ--LI 50 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H--HH-H--------------------------TSCE--EE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h--hh-h--------------------------hHHH--HH
Confidence 357789999999999999999999999 5799988775 1 11 0 1112 22
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
...+ . +.+.++++||.|+++......|.+.|+++++|+-
T Consensus 51 ~~~~---~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 51 RREF---E-EDLDGADLVFAATDDPELNEAIYADARARGILVN 89 (103)
T ss_dssp ESS----G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEE
T ss_pred hhhH---H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEE
Confidence 3333 1 3478899999999999999999999999999873
No 58
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.93 E-value=4.8e-05 Score=61.14 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=56.6
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
.++.++|+|+|+||.|..++..|...|+++|+++. |. ..|++.+++.+ +...+...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n-----------Rt---------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN-----------RT---------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE-----------SS---------HHHHHHHHHHH----TGCSEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE-----------CC---------HHHHHHHHHHc----Ccccccee
Confidence 46778999999999999999999999999999976 43 13666666666 44444444
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCH
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNP 217 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~ 217 (236)
.-. + -.+.+.++|+||.|+...
T Consensus 65 ~~~--~-~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 65 PLE--D-LEEALQEADIVINATPSG 86 (135)
T ss_dssp EGG--G-HCHHHHTESEEEE-SSTT
T ss_pred eHH--H-HHHHHhhCCeEEEecCCC
Confidence 321 1 125678899999998643
No 59
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.92 E-value=0.00011 Score=63.46 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=69.0
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
++.++|+|||.|.+|..-++.|...|. ++++++++.- ..+ . .+.+. -+++.+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~--~~l--------------------~-~l~~~---~~i~~~~ 59 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE--SEL--------------------T-LLAEQ---GGITWLA 59 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC--HHH--------------------H-HHHHc---CCEEEEe
Confidence 466789999999999999999999997 5999986431 011 1 11111 1455555
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS 234 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~ 234 (236)
..+. .+.+.++++||.|+++.+....+...|++.++++
T Consensus 60 ~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 60 RCFD---ADILEGAFLVIAATDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred CCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence 5554 3457899999999999999999999999999987
No 60
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.81 E-value=9.1e-05 Score=68.86 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=63.4
Q ss_pred EEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
|+|+|+|.+|+.+++.|++.+-. ++++.|.+.- |++.+++.+ ...+++....++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~--------------------~~~~~~~~~----~~~~~~~~~~d~~ 56 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE--------------------KAERLAEKL----LGDRVEAVQVDVN 56 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH--------------------HHHHHHT------TTTTEEEEE--TT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH--------------------HHHHHHhhc----cccceeEEEEecC
Confidence 68999999999999999998865 8999884332 233333332 2346666666655
Q ss_pred cch--hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 198 EIS--EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 198 ~~~--~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+.. .++++++|+||.|..+. ....+-+.|.+.|+++|
T Consensus 57 ~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 57 DPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYV 95 (386)
T ss_dssp THHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEE
T ss_pred CHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCee
Confidence 433 56789999999999887 77789999999999876
No 61
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.72 E-value=0.00037 Score=57.71 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=62.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++..+|+|||.|.+|...++.|...|.. +++++++..+ .+ .++ + .++..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIsp~~~~--~l------------------------~~l-~--~i~~~ 59 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVSPEICK--EM------------------------KEL-P--YITWK 59 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCccCH--HH------------------------Hhc-c--CcEEE
Confidence 56778999999999999999999999975 8888755322 11 011 1 12233
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKS 231 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ 231 (236)
...+. .+.+.++|+||.|+++.+....+...|++++
T Consensus 60 ~~~~~---~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 60 QKTFS---NDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred ecccC---hhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 33332 3456889999999999999999999998853
No 62
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.71 E-value=0.00032 Score=61.52 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=75.4
Q ss_pred chhhhhcccCccccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH
Q psy9587 101 LTTLHTNWAGSQSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA 180 (236)
Q Consensus 101 ydrq~~l~g~~~~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L 180 (236)
|++....+...-+++..+|+|||.|.++..=++.|..+|.. |+++-++.-++ + .. +
T Consensus 10 ~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-VtVVap~i~~e--l-----------------~~----l 65 (223)
T PRK05562 10 YNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCY-VYILSKKFSKE--F-----------------LD----L 65 (223)
T ss_pred hhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCCCHH--H-----------------HH----H
Confidence 44444444554466778999999999999999999999955 99987664211 1 00 1
Q ss_pred HhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 181 QNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 181 ~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.. ++ .++.....+. .+.+.++++||.|+++......|.+.|+..++++.
T Consensus 66 ~~-~~--~i~~~~r~~~---~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 66 KK-YG--NLKLIKGNYD---KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred Hh-CC--CEEEEeCCCC---hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 11 22 3555555553 34568999999999999999999999999998764
No 63
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.40 E-value=0.0011 Score=59.93 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=32.3
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|+|+||+|..++..|+..|+.+|+|++.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 455789999999999999999999999999998864
No 64
>PRK04148 hypothetical protein; Provisional
Probab=97.34 E-value=0.0024 Score=51.89 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=70.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+..+|++|||| .|..+|..|+..|. .++.+|-+.- .++.+ ++. .+.+...
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~--------------------aV~~a----~~~----~~~~v~d 65 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK--------------------AVEKA----KKL----GLNAFVD 65 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH--------------------HHHHH----HHh----CCeEEEC
Confidence 44679999999 89999999999996 5777773321 12222 222 2456667
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
++.+.+.++.+++|+|-.+--+++...-|-++|++.+.++++
T Consensus 66 Dlf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 66 DLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred cCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 777767888999999999999999999999999999998874
No 65
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.28 E-value=0.0015 Score=56.79 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=66.7
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++.++|+|||.|.+|..=++.|+.+|.. ++++-++. ...+ .+ +. ... ++...
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~--~~el--~~---------------~~----~~~---~i~~~ 61 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF--EPEL--KA---------------LI----EEG---KIKWI 61 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc--cHHH--HH---------------HH----Hhc---Ccchh
Confidence 45778999999999999999999999987 66665554 2222 11 11 111 13333
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
...+ ..+.+..+++||.|+++......|.+.|++++||+-
T Consensus 62 ~~~~---~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vN 101 (210)
T COG1648 62 EREF---DAEDLDDAFLVIAATDDEELNERIAKAARERRILVN 101 (210)
T ss_pred hccc---ChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCcee
Confidence 3333 334556699999999999999999999999999873
No 66
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.24 E-value=0.0014 Score=53.10 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=53.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCce--EEEEe
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVE--VTSNE 193 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~--I~~~~ 193 (236)
+|.|||+ |.+|+.+|..|+..|+. +|.|+|.+ ..|++..+..|....+... +....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~--------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN--------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS--------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC--------------------cccceeeehhhhhhhhhccccccccc
Confidence 5899999 99999999999999996 49999832 1256667777776655443 33333
Q ss_pred cCCCcchhhhcCCCcEEEEcCCC
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
. ..+-++++|+||.+...
T Consensus 62 ~-----~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 G-----DYEALKDADIVVITAGV 79 (141)
T ss_dssp S-----SGGGGTTESEEEETTST
T ss_pred c-----cccccccccEEEEeccc
Confidence 2 34567899999988753
No 67
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.23 E-value=0.0014 Score=59.21 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=32.8
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+.++|+|+|+||.|..++..|+..|+.+|+|+|.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3457899999999999999999999999999998553
No 68
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0022 Score=56.07 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=61.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
.++|+|+|.+|..+|+.|+..|-. ++++|.|.-. +.+.+... ....++...-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~-----------------------~~~~~~~~---~~~~~v~gd~t 54 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEER-----------------------VEEFLADE---LDTHVVIGDAT 54 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHH-----------------------HHHHhhhh---cceEEEEecCC
Confidence 578999999999999999999988 5666644311 11112211 12233333333
Q ss_pred cch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHH-cCCcEE
Q psy9587 198 EIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRS-KSKISL 235 (236)
Q Consensus 198 ~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~-~~ip~I 235 (236)
+.. ..-+.++|++|.++++......+..++.+ +|+|-+
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~v 96 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRV 96 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcE
Confidence 222 33468899999999998888888888876 788865
No 69
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.14 E-value=0.0028 Score=58.12 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=53.1
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc-eEEEE
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV-EVTSN 192 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v-~I~~~ 192 (236)
+..+|.|||+|.+|+.+|..|+..|+. +|.|+|-+ ..|++..+..|....|.. ++...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~--------------------~~~~~g~~~Dl~~~~~~~~~~~i~ 64 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN--------------------KEKAEGDAMDLSHAVPFTSPTKIY 64 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------CchhHHHHHHHHhhccccCCeEEE
Confidence 446899999999999999999999985 79998831 224555666676665432 22222
Q ss_pred ecCCCcchhhhcCCCcEEEEcCC
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSC 215 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d 215 (236)
.. +.+-++++|+||.+..
T Consensus 65 ~~-----~~~~~~~adivIitag 82 (315)
T PRK00066 65 AG-----DYSDCKDADLVVITAG 82 (315)
T ss_pred eC-----CHHHhCCCCEEEEecC
Confidence 22 2244799999998765
No 70
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.10 E-value=0.0034 Score=56.94 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=32.3
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+.++|+|+|+||.+..++-.|+..|+.+|+|++.+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 455789999999999999999999999999998854
No 71
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.08 E-value=0.0022 Score=57.83 Aligned_cols=35 Identities=6% Similarity=-0.026 Sum_probs=31.6
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++|+|+|+||.|..++..|+..|+.+|+|++.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 35678999999999999999999999999999863
No 72
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.07 E-value=0.0032 Score=57.15 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=50.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC--ceEEEEec
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN--VEVTSNET 194 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~--v~I~~~~~ 194 (236)
+|.|+|+|++|+.++..|+..|+. +|.|+|.+. .|++..+..|....+. ..+.....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~--------------------~~~~~~a~dL~~~~~~~~~~~~i~~~ 61 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE--------------------EKAEGEALDLEDALAFLPSPVKIKAG 61 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc--------------------chhhHhHhhHHHHhhccCCCeEEEcC
Confidence 589999999999999999999985 899998532 2344556656554321 11222211
Q ss_pred CCCcchhhhcCCCcEEEEcCCC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
+.+.++++|+||.|+..
T Consensus 62 -----~~~~l~~aDIVIitag~ 78 (306)
T cd05291 62 -----DYSDCKDADIVVITAGA 78 (306)
T ss_pred -----CHHHhCCCCEEEEccCC
Confidence 22346899999999864
No 73
>PRK10637 cysG siroheme synthase; Provisional
Probab=97.05 E-value=0.0048 Score=59.25 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=69.2
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+++.++|+|||.|.++..=++.|..+|. +++++-++. + +.+.++...-+++..
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~-------~-------------------~~~~~l~~~~~i~~~ 61 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF-------I-------------------PQFTAWADAGMLTLV 61 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC-------C-------------------HHHHHHHhCCCEEEE
Confidence 4677899999999999999999999997 488875432 1 011112112245555
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
...+. .+.+.++++||.|+|+......|.+.|+..++++-
T Consensus 62 ~~~~~---~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 62 EGPFD---ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred eCCCC---hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 55553 35578999999999999999999999999998763
No 74
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.05 E-value=0.0014 Score=62.36 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=56.9
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
++.++|+|||+|-.|.-+|++|...|+.+|+++ ||++ -||+.+++++. .++....
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia-----------NRT~---------erA~~La~~~~-----~~~~~l~ 230 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA-----------NRTL---------ERAEELAKKLG-----AEAVALE 230 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE-----------cCCH---------HHHHHHHHHhC-----CeeecHH
Confidence 577899999999999999999999999999994 6662 36777777766 1222111
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHH
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPN 218 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~ 218 (236)
.-.+.+..+|+||.|+..+.
T Consensus 231 -----el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 231 -----ELLEALAEADVVISSTSAPH 250 (414)
T ss_pred -----HHHHhhhhCCEEEEecCCCc
Confidence 12467889999999987543
No 75
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.00 E-value=0.0038 Score=57.16 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=52.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc---eEEEEe
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV---EVTSNE 193 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v---~I~~~~ 193 (236)
+|.|||+|.||+.+|..|+..|+ ++|.|+|- .+.|++..+.-|....+.. .++.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di--------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~ 60 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV--------------------NEGVAEGEALDFHHATALTYSTNTKIRA 60 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC--------------------CcchhhHHHHHHHhhhccCCCCCEEEEE
Confidence 47899999999999999999998 57999982 1234555666676654421 233333
Q ss_pred cCCCcchhhhcCCCcEEEEcCCC
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
. +.+-++++|+||.+...
T Consensus 61 ~-----~y~~~~~aDivvitaG~ 78 (307)
T cd05290 61 G-----DYDDCADADIIVITAGP 78 (307)
T ss_pred C-----CHHHhCCCCEEEECCCC
Confidence 2 23567999999988753
No 76
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.94 E-value=0.0049 Score=58.26 Aligned_cols=94 Identities=20% Similarity=0.111 Sum_probs=60.5
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
++.++|+|+|+|++|..+|+.|+..|.. ++++|.+.-+ ..+...++|.+.. ++...
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~-V~~~d~~~~~-------------------~~~~~~~~l~~~~----~~~~~ 58 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAK-VILTDEKEED-------------------QLKEALEELGELG----IELVL 58 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchH-------------------HHHHHHHHHHhcC----CEEEe
Confidence 3567899999999999999999999974 8898754310 1111223343332 22333
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
....+ +...++|+||.+++..... .+-..|+++|||++
T Consensus 59 ~~~~~---~~~~~~d~vv~~~g~~~~~-~~~~~a~~~~i~~~ 96 (450)
T PRK14106 59 GEYPE---EFLEGVDLVVVSPGVPLDS-PPVVQAHKKGIEVI 96 (450)
T ss_pred CCcch---hHhhcCCEEEECCCCCCCC-HHHHHHHHCCCcEE
Confidence 32222 3457899999988653332 36677788899875
No 77
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.89 E-value=0.0046 Score=55.40 Aligned_cols=36 Identities=8% Similarity=-0.010 Sum_probs=32.5
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|+|+||+|..++..|...|+.++++++.+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456789999999999999999999999999998754
No 78
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.81 E-value=0.0061 Score=55.35 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=51.1
Q ss_pred EEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC---ceEEEEec
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN---VEVTSNET 194 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~---v~I~~~~~ 194 (236)
|.|||+|.+|+.+|..|+..|+ .+|+|+|.+ +.|++..+..|....+. +++.. ..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~--------------------~~~~~g~~~DL~~~~~~~~~~~i~~-~~ 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN--------------------EEKAKGDALDLSHASAFLATGTIVR-GG 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------ccHHHHHHHhHHHhccccCCCeEEE-CC
Confidence 4789999999999999999998 569999942 12455666677766654 22221 11
Q ss_pred CCCcchhhhcCCCcEEEEcCCC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
+.+-++++|+||.|...
T Consensus 60 -----~~~~l~~aDiVIitag~ 76 (300)
T cd00300 60 -----DYADAADADIVVITAGA 76 (300)
T ss_pred -----CHHHhCCCCEEEEcCCC
Confidence 13467899999998763
No 79
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.79 E-value=0.0083 Score=47.48 Aligned_cols=92 Identities=23% Similarity=0.281 Sum_probs=56.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CCceEEEEec
Q psy9587 118 VYSTGPL-TRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PNVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~v~I~~~~~ 194 (236)
+|+|+|+ |-.|..+++.+.. .|+.=...+|... ++. . ..|+|. +..+. ..+.+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~-g~d~g~---------~~~~~~~~~~v~---- 58 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------V-GKDVGE---------LAGIGPLGVPVT---- 58 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------T-TSBCHH---------HCTSST-SSBEB----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------c-cchhhh---------hhCcCCcccccc----
Confidence 5899999 9999999999998 7776666667543 111 0 122321 11111 111111
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
..-.+.+..+|+|||++ +++.-...-++|.++++|+|.
T Consensus 59 ---~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~Vi 96 (124)
T PF01113_consen 59 ---DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVI 96 (124)
T ss_dssp ---S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEE
T ss_pred ---hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEE
Confidence 22245666699999999 777777888888888999873
No 80
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.77 E-value=0.0039 Score=59.39 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=53.4
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
+..++|+|+|+|+.|..++++|+..|+.+|+++. |. ..|++.+++.+. ...+..
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n-----------Rt---------~~ra~~La~~~~----~~~~~~-- 232 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN-----------RT---------IEKAQKITSAFR----NASAHY-- 232 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC-----------CC---------HHHHHHHHHHhc----CCeEec--
Confidence 4567899999999999999999999999999954 53 125555555432 112111
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHH
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPN 218 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~ 218 (236)
+ +...+.+.++|+||.|+..+.
T Consensus 233 --~-~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 233 --L-SELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred --H-HHHHHHhccCCEEEECcCCCC
Confidence 1 112467889999999997654
No 81
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0072 Score=54.88 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=31.0
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+..+|+|+|+||.+-.++..|+..|+.+|+|++.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 4578999999999999999999999999999763
No 82
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.66 E-value=0.0084 Score=55.00 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=31.3
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|.|||+|.+|+.++..|+..|+..|.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 44689999999999999999999998889999954
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.63 E-value=0.01 Score=54.12 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=55.6
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
+...+|+|+|+|.+|..+++.|...|+.+++++|.+. .|+..+++.+. . .+..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~--------------------~ra~~la~~~g----~-~~~~-- 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY--------------------ERAEELAKELG----G-NAVP-- 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH--------------------HHHHHHHHHcC----C-eEEe--
Confidence 4567899999999999999999999999999987432 23444444432 1 1111
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC 227 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c 227 (236)
+ +...+.+.++|+||.|+.+......+.+..
T Consensus 229 --~-~~~~~~l~~aDvVi~at~~~~~~~~~~~~~ 259 (311)
T cd05213 229 --L-DELLELLNEADVVISATGAPHYAKIVERAM 259 (311)
T ss_pred --H-HHHHHHHhcCCEEEECCCCCchHHHHHHHH
Confidence 1 112345678999999998766633344443
No 84
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.62 E-value=0.011 Score=54.29 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=51.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc---eEEEE
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV---EVTSN 192 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v---~I~~~ 192 (236)
.+|.|||+|.||+.+|..|+..|.. +|.|+|-+ ..|++..+..|....|.. +|...
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~--------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVV--------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 4789999999999999999999985 69999832 124556666677665432 22211
Q ss_pred ecCCCcchhhhcCCCcEEEEcCC
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSC 215 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d 215 (236)
. +.+.++++|+||.+..
T Consensus 64 -~-----dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K-----DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C-----CHHHhCCCCEEEECCC
Confidence 1 2234799999998765
No 85
>PLN02602 lactate dehydrogenase
Probab=96.56 E-value=0.011 Score=55.11 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC---ceEEEE
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN---VEVTSN 192 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~---v~I~~~ 192 (236)
.+|.|||+|.||+.+|..|+..|+ .+|.|+|-+ +.|++..+..|....+. ++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~--------------------~~~~~g~a~DL~~~~~~~~~~~i~~~ 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN--------------------PDKLRGEMLDLQHAAAFLPRTKILAS 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC--------------------CchhhHHHHHHHhhhhcCCCCEEEeC
Confidence 588999999999999999999998 479999841 12345555556655432 333221
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
. +.+.++++|+||.+...
T Consensus 98 -~-----dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 98 -T-----DYAVTAGSDLCIVTAGA 115 (350)
T ss_pred -C-----CHHHhCCCCEEEECCCC
Confidence 1 23458999999988653
No 86
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.56 E-value=0.011 Score=62.12 Aligned_cols=107 Identities=18% Similarity=0.050 Sum_probs=60.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+.++|+|+|+|.+|..++++|+..+--. .+..+.-+..++ +..-.|....+++.+++. .|.++ +..-
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~--~~~~~~~~~~~~-----lV~VaD~~~~~a~~la~~----~~~~~--~v~l 634 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTIS--YYGDDSEEPTDV-----HVIVASLYLKDAKETVEG----IENAE--AVQL 634 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCcc--cccccccccccc-----EEEEECCCHHHHHHHHHh----cCCCc--eEEe
Confidence 4568999999999999999998753211 111111111111 122233333344444433 34433 2222
Q ss_pred CCCcc--hhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEI--SEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~--~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
++.+. -.++++++|+||.|+... .-..+.+.|.+.|+.++
T Consensus 635 Dv~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv 676 (1042)
T PLN02819 635 DVSDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLV 676 (1042)
T ss_pred ecCCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEE
Confidence 22221 134557899999998763 34677888888888876
No 87
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.0085 Score=58.93 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=65.0
Q ss_pred cccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 114 YKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 114 lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
++.++|+|.|+| ++|+++++.++..+.++|.++|.|... -..+...|++..|..++..+
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~--------------------~~~i~~el~~~~~~~~~~~~ 307 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYK--------------------LYLIDMELREKFPELKLRFY 307 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHH--------------------HHHHHHHHHhhCCCcceEEE
Confidence 577899999965 799999999999999999999977643 23467788999998899988
Q ss_pred ecCCCcch--hhhcCC--CcEEEEcC
Q psy9587 193 ETKVDEIS--EEFVHG--FDVVIATS 214 (236)
Q Consensus 193 ~~~l~~~~--~~~l~~--~DlVI~~~ 214 (236)
-.++.+.. ...+.+ .|+|+-|.
T Consensus 308 igdVrD~~~~~~~~~~~kvd~VfHAA 333 (588)
T COG1086 308 IGDVRDRDRVERAMEGHKVDIVFHAA 333 (588)
T ss_pred ecccccHHHHHHHHhcCCCceEEEhh
Confidence 88887654 445666 89988654
No 88
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.42 E-value=0.027 Score=48.31 Aligned_cols=109 Identities=9% Similarity=0.094 Sum_probs=59.8
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
.++.++|+|+|+|.+|..+++.|...|. +++++|.+.-....+ .. ..|...++. +.+... .+.|-..
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~-~~-------~~g~~~v~~--~~l~~~--~~Dv~vp 91 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARA-AE-------LFGATVVAP--EEIYSV--DADVFAP 91 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH-HH-------HcCCEEEcc--hhhccc--cCCEEEe
Confidence 4677889999999999999999999998 577888553111111 00 001000000 111111 1222221
Q ss_pred ---ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 193 ---ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 193 ---~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
...+++.+...+ ++++|+....++-+...-.++.+++||.|+
T Consensus 92 ~A~~~~I~~~~~~~l-~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~ 136 (200)
T cd01075 92 CALGGVINDDTIPQL-KAKAIAGAANNQLADPRHGQMLHERGILYA 136 (200)
T ss_pred cccccccCHHHHHHc-CCCEEEECCcCccCCHhHHHHHHHCCCEEe
Confidence 122333333333 478888777664443455667778887664
No 89
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.41 E-value=0.015 Score=53.44 Aligned_cols=35 Identities=26% Similarity=0.177 Sum_probs=30.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|.|||+|.+|+.+|..|+..|+..+.|+|-+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 44689999999999999999999998669999853
No 90
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.40 E-value=0.0038 Score=56.91 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=46.7
Q ss_pred EEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCC--ce--EEEEe
Q psy9587 119 YSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN--VE--VTSNE 193 (236)
Q Consensus 119 VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~--v~--I~~~~ 193 (236)
|+|.| +|++|+++++.|+..|+.+|.++|.|.-...++ ...+++..+. ++ +....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l--------------------~~~l~~~~~~~~v~~~~~~vi 60 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL--------------------ERELRSRFPDPKVRFEIVPVI 60 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH--------------------HHHCHHHC--TTCEEEEE--C
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH--------------------HHHHhhcccccCcccccCcee
Confidence 57777 678999999999999999999999776544444 4455555443 32 23445
Q ss_pred cCCCcch--hhhcC--CCcEEEEcC
Q psy9587 194 TKVDEIS--EEFVH--GFDVVIATS 214 (236)
Q Consensus 194 ~~l~~~~--~~~l~--~~DlVI~~~ 214 (236)
.++.+.. ...++ +.|+|+-+.
T Consensus 61 gDvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 61 GDVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp TSCCHHHHHHHHTT--T-SEEEE--
T ss_pred ecccCHHHHHHHHhhcCCCEEEECh
Confidence 5555432 34556 788988664
No 91
>KOG4169|consensus
Probab=96.40 E-value=0.012 Score=52.25 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
+.++++++| |||+|-++++.|+.-|+..+.+.| +.+|+ .+..+|+++||.+++..+.
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~----~~En~------------------~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDD----SEENP------------------EAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehh----hhhCH------------------HHHHHHhccCCCceEEEEE
Confidence 455666555 999999999999999999888866 22333 3677899999999999998
Q ss_pred cCCCcch---------hhhcCCCcEEEEcC
Q psy9587 194 TKVDEIS---------EEFVHGFDVVIATS 214 (236)
Q Consensus 194 ~~l~~~~---------~~~l~~~DlVI~~~ 214 (236)
.++.... ...+...|++|...
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 8887521 12345678888654
No 92
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.39 E-value=0.0051 Score=45.63 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=49.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC--ceEEEe-eCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV--KSVCLL-DSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV--g~I~Lv-D~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+|+|||+|.+|+.++..|+..|. .++.++ +.+. .| .+++.+..+ +. ...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~--------------------~~----~~~~~~~~~-~~--~~~- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP--------------------EK----AAELAKEYG-VQ--ATA- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH--------------------HH----HHHHHHHCT-TE--EES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH--------------------HH----HHHHHHhhc-cc--ccc-
Confidence 47899999999999999999995 344433 3111 12 233334443 11 111
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDF 226 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~ 226 (236)
..+.+.++.+|+||.|+.+......+.++
T Consensus 53 ---~~~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 53 ---DDNEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp ---EEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred ---CChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 12456677899999999988877777777
No 93
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.37 E-value=0.025 Score=47.59 Aligned_cols=80 Identities=23% Similarity=0.168 Sum_probs=51.5
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
++..+|+|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ...+...
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~--------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD--------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC--------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 46678999996 9999999999999884 78887632 124555566554332 2333332
Q ss_pred ecCCCcc-hhhhcCCCcEEEEcCCC
Q psy9587 193 ETKVDEI-SEEFVHGFDVVIATSCN 216 (236)
Q Consensus 193 ~~~l~~~-~~~~l~~~DlVI~~~d~ 216 (236)
... +.. ..+.+.++|+||.|+..
T Consensus 84 ~~~-~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 ETS-DDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred eCC-CHHHHHHHHhcCCEEEECCCC
Confidence 111 111 14567889999988754
No 94
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.35 E-value=0.052 Score=41.41 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=57.6
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCCc
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDE 198 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~~ 198 (236)
|+|+|+|.+|-++++.|...| -.++++|.|.-. .+.+.+.. +..+.++..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~------------------------~~~~~~~~----~~~i~gd~~~ 51 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER------------------------VEELREEG----VEVIYGDATD 51 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH------------------------HHHHHHTT----SEEEES-TTS
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH------------------------HHHHHhcc----cccccccchh
Confidence 689999999999999999944 569999966422 22223222 2344455444
Q ss_pred ch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHc
Q psy9587 199 IS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSK 230 (236)
Q Consensus 199 ~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~ 230 (236)
.. ..-+++++.||.++++......+...+++.
T Consensus 52 ~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 52 PEVLERAGIEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 22 335678999999999999888888888873
No 95
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.18 E-value=0.02 Score=50.86 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=27.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|+|+|+|.+|+.++..|+..|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 48999999999999999999985 68998864
No 96
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.18 E-value=0.0047 Score=50.69 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=55.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|.|+|+|..|+.+|..|+..| .+++|+..+.=....+ +.+.. -....|.+++.. .-..+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i-~~~~~-----------------n~~~~~~~~l~~-~i~~t 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEI-NETRQ-----------------NPKYLPGIKLPE-NIKAT 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHH-HHHTS-----------------ETTTSTTSBEET-TEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHH-HHhCC-----------------CCCCCCCcccCc-ccccc
Confidence 4789999999999999999999 6688887664222222 11000 000112222111 00112
Q ss_pred cchhhhcCCCcEEEEcCCCHHHHHHHHHHHH--HcCCcEE
Q psy9587 198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCR--SKSKISL 235 (236)
Q Consensus 198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~--~~~ip~I 235 (236)
..-.+.++++|+||.++.+...+..+.++.. +.+.++|
T Consensus 61 ~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 61 TDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp SSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred cCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE
Confidence 2224577899999999998888877777665 3344443
No 97
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.15 E-value=0.023 Score=52.40 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=29.8
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..+|.|||+|.+|+.+|..++.+|.. ++++|.+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 35799999999999999999999987 88888654
No 98
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.13 E-value=0.037 Score=50.22 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=67.1
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHh----CC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILS----GV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN 182 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~----GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~ 182 (236)
+++..+|+++|+|+.|.-+++.|..+ |+ ++|.++|.+-+=..+- .|+...|...+. .
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r---------~~l~~~~~~~a~----~ 88 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR---------KDLTPFKKPFAR----K 88 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC---------CcchHHHHHHHh----h
Confidence 45678899999999999999999988 99 6999999765422211 122233333222 2
Q ss_pred hCCCceEEEEecCCCcchhhhcC--CCcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587 183 LNPNVEVTSNETKVDEISEEFVH--GFDVVIATSC--NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 183 inp~v~I~~~~~~l~~~~~~~l~--~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~ 236 (236)
.++ ... ..-.+.++ +.|++|.+.. ..=+...|..++....-|+||
T Consensus 89 ~~~--------~~~-~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 89 DEE--------KEG-KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred cCc--------ccC-CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 222 000 11245566 7799988763 456777888888888888886
No 99
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.024 Score=54.17 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=56.3
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+..+|+|+|+|++|.++|..|...|.. ++++|.... .....+.+.|++. .+++ +..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~~~-------------------~~~~~~~~~l~~~--gv~~--~~~ 70 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDGDD-------------------ERHRALAAILEAL--GATV--RLG 70 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCch-------------------hhhHHHHHHHHHc--CCEE--EEC
Confidence 446899999999999999999999985 888884321 0122334445544 3333 222
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.-.. ...++|+||.+..-.... .+-..|++.|+|++
T Consensus 71 ~~~~----~~~~~D~Vv~s~Gi~~~~-~~~~~a~~~gi~v~ 106 (480)
T PRK01438 71 PGPT----LPEDTDLVVTSPGWRPDA-PLLAAAADAGIPVW 106 (480)
T ss_pred CCcc----ccCCCCEEEECCCcCCCC-HHHHHHHHCCCeec
Confidence 1111 335689999887533222 23344567777764
No 100
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.10 E-value=0.013 Score=47.02 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=31.7
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+..+|+|+|+|++|..+++.|...|...++++|.+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3457899999999999999999999877899988653
No 101
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.09 E-value=0.016 Score=48.61 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=30.0
Q ss_pred ccccceEEEEcCChh-HHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRV-GAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~Ggv-Gsevak~La~~GVg~I~LvD~ 148 (236)
.++.++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 467789999999985 8889999999999 5888773
No 102
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.08 E-value=0.0092 Score=52.19 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=33.9
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCc
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGV 150 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~ 150 (236)
++..+|+|+|+|+.|..+++.|+..|+. +|+++|.+-
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 5667899999999999999999999999 999999773
No 103
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.05 E-value=0.023 Score=52.39 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=51.6
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGV-K-----SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PN 186 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GV-g-----~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~ 186 (236)
+-.+|.|||+ |.||+.+|..|+..|+ + +|.|+|-.. .+.|++..+..|.... |.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~------------------~~~~a~g~a~Dl~~~~~~~ 63 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP------------------AMKALEGVAMELEDCAFPL 63 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC------------------cccccchHHHHHhhccccc
Confidence 3468999998 9999999999999887 4 588877321 1123444555566555 32
Q ss_pred ce-EEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587 187 VE-VTSNETKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 187 v~-I~~~~~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
.. ++ +...+.+-++++|+||.+.+.
T Consensus 64 ~~~~~-----i~~~~~~~~~daDvVVitAG~ 89 (323)
T TIGR01759 64 LAGVV-----ATTDPEEAFKDVDAALLVGAF 89 (323)
T ss_pred cCCcE-----EecChHHHhCCCCEEEEeCCC
Confidence 21 11 112245678999999988753
No 104
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.02 E-value=0.037 Score=49.91 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 578999999999999999999997 588888543
No 105
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.00 E-value=0.05 Score=47.69 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=32.0
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.++..+|+|.|.|.||..+++.|...|..-+.+.|.
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 457789999999999999999999999987778885
No 106
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.97 E-value=0.06 Score=46.92 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=33.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.++.++|+|.|+|.+|..+|+.|...|...+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 35778999999999999999999999999999999543
No 107
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.96 E-value=0.016 Score=42.73 Aligned_cols=37 Identities=30% Similarity=0.186 Sum_probs=33.0
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+..++++|+|+|.+|..++..|...|..++.++|.|.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi 57 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI 57 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4567899999999999999999999888999999844
No 108
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.94 E-value=0.049 Score=50.00 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=53.6
Q ss_pred cceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
.++|+|+|+|+.|...++.|. ..|+.++++++.+ ..|++.+++++.+..+ +++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~--------------------~~~a~~~a~~~~~~~g-~~v~~~-- 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD--------------------SAKAEALALQLSSLLG-IDVTAA-- 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC--------------------HHHHHHHHHHHHhhcC-ceEEEe--
Confidence 358999999999999999997 5788889997522 2367777887765432 333322
Q ss_pred CCCcchhhhcCCCcEEEEcCCC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
+...+.+.++|+||.|+..
T Consensus 186 ---~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 186 ---TDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred ---CCHHHHhccCCEEEEecCC
Confidence 1124567889999999865
No 109
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.94 E-value=0.026 Score=50.58 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=65.0
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHh----CC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILS----GV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN 182 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~----GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~ 182 (236)
.++..+|+++|+|+.|.-+++.|+.+ |+ ++|.++|.+-+=..+- .|+- +.-+...+.
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l~----~~~~~~a~~ 88 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDLN----PHKKPFARK 88 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSHS----HHHHHHHBS
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccCC----hhhhhhhcc
Confidence 46778999999999999999999999 99 8999999774322111 1221 112223333
Q ss_pred hCCCceEEEEecCCCcchhhhcCCC--cEEEEcC--CCHHHHHHHHHHHHHcCCcEEC
Q psy9587 183 LNPNVEVTSNETKVDEISEEFVHGF--DVVIATS--CNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 183 inp~v~I~~~~~~l~~~~~~~l~~~--DlVI~~~--d~~~~r~~In~~c~~~~ip~I~ 236 (236)
.++.... ..-.+.++.+ |++|.+. .+.=+...+..++.....|+||
T Consensus 89 ~~~~~~~--------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 89 TNPEKDW--------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp SSTTT----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred Ccccccc--------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 4433211 1124556666 8988876 3455777888888888888886
No 110
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.92 E-value=0.093 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.0
Q ss_pred ceEEEEcCChhHHHHHHHHHH
Q psy9587 117 YVYSTGPLTRVGAEIAKNIIL 137 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~ 137 (236)
.+|.|+|+|.||+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 468999999999999999886
No 111
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.90 E-value=0.054 Score=42.35 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=51.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC----CceEEE
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP----NVEVTS 191 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp----~v~I~~ 191 (236)
+|+||| .|-+|.++++.|...=- .-+.++.... ..|+. +...+| ...+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----------------~~g~~--------~~~~~~~~~~~~~~~~ 56 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----------------SAGKP--------LSEVFPHPKGFEDLSV 56 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----------------TTTSB--------HHHTTGGGTTTEEEBE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----------------ccCCe--------eehhccccccccceeE
Confidence 589999 88999999999997222 2233333222 13332 222222 222222
Q ss_pred EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.. ...+.++++|+||.|+++........++ .+.|+++|
T Consensus 57 ~~-----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~Vi 94 (121)
T PF01118_consen 57 ED-----ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVI 94 (121)
T ss_dssp EE-----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEE
T ss_pred ee-----cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEE
Confidence 22 2334568999999999887776665555 67777664
No 112
>PLN00203 glutamyl-tRNA reductase
Probab=95.89 E-value=0.023 Score=55.76 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=51.0
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
+...+|+|||+|.+|..++++|...|+.+|++++.+. .|++.+++.+ +.+.+....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~--------------------era~~La~~~----~g~~i~~~~ 319 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE--------------------ERVAALREEF----PDVEIIYKP 319 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH--------------------HHHHHHHHHh----CCCceEeec
Confidence 4567899999999999999999999999999976321 2344444333 233332211
Q ss_pred cCCCcchhhhcCCCcEEEEcCCC
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
. +...+.+.++|+||.|+..
T Consensus 320 ~---~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 320 L---DEMLACAAEADVVFTSTSS 339 (519)
T ss_pred H---hhHHHHHhcCCEEEEccCC
Confidence 1 1124567899999999754
No 113
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.88 E-value=0.071 Score=43.51 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=57.9
Q ss_pred EEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 119 YSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 119 VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
|+|+|+ |.+|..+++.|...| .+++.+ .|. ..|.+. .+ .++....++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~-----------~R~---------~~~~~~--------~~--~~~~~~~d~~ 49 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTAL-----------VRS---------PSKAED--------SP--GVEIIQGDLF 49 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEE-----------ESS---------GGGHHH--------CT--TEEEEESCTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEE-----------ecC---------chhccc--------cc--ccccceeeeh
Confidence 689996 999999999999999 445553 232 012222 33 5556666665
Q ss_pred cch--hhhcCCCcEEEEcCCC----HHHHHHHHHHHHHcCCcEE
Q psy9587 198 EIS--EEFVHGFDVVIATSCN----PNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 198 ~~~--~~~l~~~DlVI~~~d~----~~~r~~In~~c~~~~ip~I 235 (236)
+.. .+.++++|.||++..+ ...-..+-+.|.+.+++-+
T Consensus 50 d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 93 (183)
T PF13460_consen 50 DPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRV 93 (183)
T ss_dssp CHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred hhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccc
Confidence 432 5567899999999753 4455677778888887543
No 114
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.87 E-value=0.023 Score=52.62 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=58.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|+|+|.+|--.+..+...|..+|.++|.+.-. .+.++ +... ..+......-.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R--------------------l~~A~----~~~g-~~~~~~~~~~~ 225 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER--------------------LELAK----EAGG-ADVVVNPSEDD 225 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH--------------------HHHHH----HhCC-CeEeecCcccc
Confidence 79999999999999999999999999999854321 11111 1111 11111111100
Q ss_pred --cchhhhc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587 198 --EISEEFV--HGFDVVIATSCNPNQLIKIDDFCRSKSKIS 234 (236)
Q Consensus 198 --~~~~~~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~ 234 (236)
....+.- .++|++|+|+.+..+.....++++..|.-+
T Consensus 226 ~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 226 AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVV 266 (350)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 0011222 359999999998888888888888776543
No 115
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.86 E-value=0.057 Score=38.92 Aligned_cols=53 Identities=19% Similarity=0.106 Sum_probs=37.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL 183 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i 183 (236)
+|+|||.|.+|+++|..|+..|. +++|++...- +. ......=.+.+.+.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~----------~~--~~~~~~~~~~~~~~l~~~ 53 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR----------LL--PGFDPDAAKILEEYLRKR 53 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS----------SS--TTSSHHHHHHHHHHHHHT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch----------hh--hhcCHHHHHHHHHHHHHC
Confidence 47899999999999999999996 5888874321 11 223333455666677766
No 116
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.85 E-value=0.071 Score=49.36 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHh
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILS 138 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~ 138 (236)
.+|+|+|+|.+|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4689999999999999999765
No 117
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.84 E-value=0.034 Score=49.91 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=28.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+..+|+|+|+|++|..++..+...|+..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 3457899999999999999888999998877764
No 118
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.84 E-value=0.023 Score=50.05 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=25.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC--ceEEEeeC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV--KSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV--g~I~LvD~ 148 (236)
+|.|||+|.+|+.++..|...|. ..+.++|.
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 58999999999999999999884 34566553
No 119
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.80 E-value=0.055 Score=49.44 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=50.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
..++|+|+|+|+.|...++.+.. .|+.+|++++.+ ..|++.+++.+.+.. ..+...
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs--------------------~~~a~~~a~~~~~~g--~~~~~~- 180 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD--------------------PAKAEALAAELRAQG--FDAEVV- 180 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC--------------------HHHHHHHHHHHHhcC--CceEEe-
Confidence 44689999999999999987775 678889987632 235666777766532 122221
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCH
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNP 217 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~ 217 (236)
....+.+.++|+||+|+.+.
T Consensus 181 ----~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 181 ----TDLEAAVRQADIISCATLST 200 (314)
T ss_pred ----CCHHHHHhcCCEEEEeeCCC
Confidence 11234567888888887653
No 120
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.76 E-value=0.032 Score=49.96 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+|.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 578999999999999999999997 59999854
No 121
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.73 E-value=0.042 Score=50.10 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D 149 (236)
+|.|||+|.+|+.+|..|+..|+ .++.|+|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 48899999999999999999996 679999953
No 122
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.72 E-value=0.011 Score=47.29 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=49.9
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCcc-ccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQF-LAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~-l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
|+|+|+|++|+.+|-.|...|.. +++++... ..+.+ ..+- -+...+ |. ..+... ....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~-~~~g~~~~~~~-~~----------------~~~~~~-~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAI-KEQGLTITGPD-GD----------------ETVQPP-IVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHH-HHHCEEEEETT-EE----------------EEEEEE-EEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhh-hheeEEEEecc-cc----------------eecccc-cccC
Confidence 68999999999999999997776 77777444 21112 1110 000000 00 000000 0000
Q ss_pred cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587 198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229 (236)
Q Consensus 198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~ 229 (236)
. .......+|+||.|+-.......+..+...
T Consensus 60 ~-~~~~~~~~D~viv~vKa~~~~~~l~~l~~~ 90 (151)
T PF02558_consen 60 A-PSADAGPYDLVIVAVKAYQLEQALQSLKPY 90 (151)
T ss_dssp S-HGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred c-chhccCCCcEEEEEecccchHHHHHHHhhc
Confidence 0 023457899999999887777777765443
No 123
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.71 E-value=0.03 Score=51.64 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=29.5
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~ 148 (236)
+-.+|+|+|+ |.||+.++..|+..|.. +|.|+|-
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 4458999998 99999999999987775 7999996
No 124
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.70 E-value=0.097 Score=47.98 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=30.3
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.++.++|+|||+|.+|..+|+.|...|+. +..+|.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 46778999999999999999999999985 666664
No 125
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.69 E-value=0.081 Score=46.97 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHh-CCceEEEeeCC
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILS-GVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~-GVg~I~LvD~D 149 (236)
+|+|+|| |.+|..+++.+... ++.-..++|.+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~ 36 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP 36 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 6899999 99999999988764 55555566654
No 126
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.65 E-value=0.073 Score=48.83 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=54.1
Q ss_pred ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
...+|+|+|+|+.|...+..++ ..|+.++.++|.+ ..|++.+++++....+ +++....
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~--------------------~~~a~~~~~~~~~~~~-~~~~~~~ 184 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT--------------------FEKAYAFAQEIQSKFN-TEIYVVN 184 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC--------------------HHHHHHHHHHHHHhcC-CcEEEeC
Confidence 3467999999999998888875 5688999998632 2356677777765432 3333321
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHH
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPN 218 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~ 218 (236)
. -.+.+.++|+||.|+.+.+
T Consensus 185 ~-----~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 185 S-----ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred C-----HHHHHhcCCEEEEccCCCC
Confidence 1 2456688999999997654
No 127
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.64 E-value=0.043 Score=49.61 Aligned_cols=31 Identities=32% Similarity=0.284 Sum_probs=28.2
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
|.|||+|.+|+.+|..|+..|.++++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5789999999999999999887699999976
No 128
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.64 E-value=0.029 Score=56.02 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=62.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV 196 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l 196 (236)
.+|+|+|+|.+|..+++.|...|+. ++++|.|.-. ++ .+++. + ..++.++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~--------------------v~----~~~~~--g--~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDH--------------------IE----TLRKF--G--MKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHH--------------------HH----HHHhc--C--CeEEEEeC
Confidence 5789999999999999999999986 8888976532 12 22221 2 23444444
Q ss_pred Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587 197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS 231 (236)
Q Consensus 197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ 231 (236)
++.+ ..-++++|++|.|+++.+....+-..++++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 4322 2346789999999999999999988888764
No 129
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.64 E-value=0.044 Score=49.44 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=29.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+|.|||+|..|+.+|.+|+.+|.. ++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCH
Confidence 4799999999999999999999985 99998654
No 130
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.63 E-value=0.075 Score=47.39 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhC--CceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSG--VKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~G--Vg~I~LvD~D 149 (236)
+|.|||||.+|..+++.|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 5899999999999999998764 4445566654
No 131
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=95.63 E-value=0.0043 Score=53.09 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=41.3
Q ss_pred ccccceEEEEcCChhHHH-HHHHHHHhCCceE------EEe---eCCcccccCCCCCcc
Q psy9587 113 SYKIYVYSTGPLTRVGAE-IAKNIILSGVKSV------CLL---DSGVVTKEDVNTAQF 161 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGse-vak~La~~GVg~I------~Lv---D~D~Ve~sNL~~rq~ 161 (236)
+++..+|.|+|.|+.|+. ++..|+.+|++.+ +++ |.+..+.+|+ |||+
T Consensus 102 ~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~-n~~~ 159 (193)
T TIGR03882 102 RLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAI-NQRA 159 (193)
T ss_pred HHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHH-HHHH
Confidence 456678999999999988 9999999999988 888 8888888888 7774
No 132
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.62 E-value=0.022 Score=51.32 Aligned_cols=108 Identities=11% Similarity=0.135 Sum_probs=65.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
.+|.|||||.+|..+++.|..-+. .-..+.|.+.-...++ . +..++-.--+.|....|++-|++-.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~------~-----~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL------A-----GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh------h-----ccCcccCCHHHHhhcCCCEEEECCC
Confidence 478999999999999999875433 2233444433111122 1 1111111134444566776666532
Q ss_pred -cCCCcchhhhcC-CCcEEEEcCC---CHHHHHHHHHHHHHcCCcEE
Q psy9587 194 -TKVDEISEEFVH-GFDVVIATSC---NPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 194 -~~l~~~~~~~l~-~~DlVI~~~d---~~~~r~~In~~c~~~~ip~I 235 (236)
.-+.+..+..++ +.|+++.+.. +......|.+.|++.+..++
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ 118 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIR 118 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEE
Confidence 333344566666 8999998865 55678889999998876553
No 133
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.59 E-value=0.038 Score=50.13 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=27.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|+|+|+|++|+.++-.|+++|. .+++++..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 58999999999999999999996 58888864
No 134
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.59 E-value=0.073 Score=48.50 Aligned_cols=75 Identities=13% Similarity=0.007 Sum_probs=53.4
Q ss_pred ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
...+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|++.+++++..... .+. .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~--------------------~~~a~~~a~~~~~~~~--~~~--~ 179 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT--------------------AASAAAFCAHARALGP--TAE--P 179 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC--------------------HHHHHHHHHHHHhcCC--eeE--E
Confidence 44689999999999999999975 678888887632 2367777877765422 222 1
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCH
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNP 217 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~ 217 (236)
....+.+.++|+||.|+.+.
T Consensus 180 ----~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 180 ----LDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred ----CCHHHHhhcCCEEEEccCCC
Confidence 11245678999999998654
No 135
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.58 E-value=0.055 Score=48.45 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=63.8
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCc----------eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK----------SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN 182 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg----------~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~ 182 (236)
.++..+|+++|+|+.|.-+++.|..+|+. +|.++|..-+=..+- . ++...|... ++.
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r---~------~l~~~~~~~-~~~--- 88 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR---K------ETCPNEYHL-ARF--- 88 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC---C------ccCHHHHHH-HHH---
Confidence 46678999999999999999999999997 899999775432221 1 122222221 111
Q ss_pred hCCCceEEEEecCCCcchhhhcC--CCcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587 183 LNPNVEVTSNETKVDEISEEFVH--GFDVVIATSC--NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 183 inp~v~I~~~~~~l~~~~~~~l~--~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~ 236 (236)
.++. ... ..-.+.++ +.|++|.... +.=+...|..++.....|+||
T Consensus 89 ~~~~-------~~~-~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 89 ANPE-------RES-GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred cCcc-------ccc-CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence 1111 000 11134455 6788876643 445667777777777778775
No 136
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.57 E-value=0.1 Score=45.20 Aligned_cols=81 Identities=6% Similarity=0.024 Sum_probs=48.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCc---eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVK---SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg---~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
..+|+|||+|.+|..++..|+..|.. .+.+++ |+ ...|++.++ +..+ +. ..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~-----------~~--------~~~~~~~~~----~~~~-~~--~~ 57 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSN-----------RS--------NVEKLDQLQ----ARYN-VS--TT 57 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEEC-----------CC--------CHHHHHHHH----HHcC-cE--Ee
Confidence 35789999999999999999988732 233322 10 011222222 2221 22 11
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC 227 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c 227 (236)
....+.++++|+||.|+.+...+..+.++.
T Consensus 58 -----~~~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 -----TDWKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred -----CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 112345678999999998877777666665
No 137
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.54 E-value=0.045 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=62.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEecC-
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNETK- 195 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~~- 195 (236)
+|.|||+|..|+.++.+|+..|.. ++++|.+.-....+ . +.|..-+....+.+... ++++-+...+..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~-v~v~dr~~~~~~~~-~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~ 71 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHE-VVGYDRNPEAVEAL-A--------EEGATGADSLEELVAKLPAPRVVWLMVPAGE 71 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCe-EEEEECCHHHHHHH-H--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCc
Confidence 588999999999999999999964 88888764222222 0 01111111122222222 345444444432
Q ss_pred CCcc----hhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587 196 VDEI----SEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 196 l~~~----~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I 235 (236)
.... -...++.-++||++. .++.....+.+.+.+.|+-|+
T Consensus 72 ~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~ 116 (301)
T PRK09599 72 ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence 1111 122344557888885 456666677888888887664
No 138
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.54 E-value=0.021 Score=52.54 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=28.6
Q ss_pred cceEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeC
Q psy9587 116 IYVYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDS 148 (236)
Q Consensus 116 ~~~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~ 148 (236)
..+|.|||+ |.||+.+|..|+..|+- +|.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 357899999 99999999999998884 5999884
No 139
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.52 E-value=0.1 Score=47.03 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=29.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+|.|||+|.+|+.+|..|+..|.+++.|+|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 46899999999999999999998669999986
No 140
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.50 E-value=0.14 Score=48.16 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=55.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|+|+|.+|..+++.|...|.. ++++|.+.- +++ .+.+ . ..+.....+..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~~--------------------~~~----~~~~-~--~~~~~~~gd~~ 53 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTDEE--------------------RLR----RLQD-R--LDVRTVVGNGS 53 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEECCHH--------------------HHH----HHHh-h--cCEEEEEeCCC
Confidence 588999999999999999998875 778875331 111 1111 0 12333333333
Q ss_pred cch--h-hhcCCCcEEEEcCCCHHHHHHHHHHHHHc
Q psy9587 198 EIS--E-EFVHGFDVVIATSCNPNQLIKIDDFCRSK 230 (236)
Q Consensus 198 ~~~--~-~~l~~~DlVI~~~d~~~~r~~In~~c~~~ 230 (236)
+.. . ..+.++|.||.++++......+...|+..
T Consensus 54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 221 2 22678999999988877777777777775
No 141
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.45 E-value=0.041 Score=50.55 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=48.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
+|.|||+ |.||+.+|..|+..|+ .+|.|+|-. . ++..+-.|....+.+++......
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~------~----------------a~g~alDL~~~~~~~~i~~~~~~ 59 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV------N----------------TPGVAADLSHINTPAKVTGYLGP 59 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC------c----------------cceeehHhHhCCCcceEEEecCC
Confidence 5789999 9999999999999997 579999955 1 11112223333334455543110
Q ss_pred CCcchhhhcCCCcEEEEcCCC
Q psy9587 196 VDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 196 l~~~~~~~l~~~DlVI~~~d~ 216 (236)
..-.+-++++|+||.+...
T Consensus 60 --~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 60 --EELKKALKGADVVVIPAGV 78 (310)
T ss_pred --CchHHhcCCCCEEEEeCCC
Confidence 0013557899999888653
No 142
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.085 Score=50.04 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=54.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC-C
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK-V 196 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~-l 196 (236)
+|+|+|+|+.|..+|+.|...|. .+++.|..... +...+...|.+. .+++. ... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~-------------------~~~~~~~~l~~~--gi~~~--~g~~~ 57 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP-------------------ELLERQQELEQE--GITVK--LGKPL 57 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch-------------------hhHHHHHHHHHc--CCEEE--ECCcc
Confidence 58999999999999999999997 58887743211 112223345443 33432 221 1
Q ss_pred Ccch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 197 DEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 197 ~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.... ...+.++|+||.+..-.... .+-..|++.++|++
T Consensus 58 ~~~~~~~~~~~~d~vv~s~gi~~~~-~~~~~a~~~~i~v~ 96 (459)
T PRK02705 58 ELESFQPWLDQPDLVVVSPGIPWDH-PTLVELRERGIEVI 96 (459)
T ss_pred chhhhhHHhhcCCEEEECCCCCCCC-HHHHHHHHcCCcEE
Confidence 1001 12467899998865432222 23445567788775
No 143
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.42 E-value=0.054 Score=51.31 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=54.1
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCce------EEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-CC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKS------VCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-PN 186 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~------I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-p~ 186 (236)
+..+|.|||+ |.||+.+|-.|+..|+-. |+|+|.|. .+.|++..+-.|.... |.
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~------------------~~~~a~g~a~DL~d~a~~~ 104 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER------------------SKEALEGVAMELEDSLYPL 104 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc------------------cchhhhHHHHHHHHhhhhh
Confidence 4578999999 999999999999999853 66666433 3345666666666654 43
Q ss_pred c-eEEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587 187 V-EVTSNETKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 187 v-~I~~~~~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
. ++..... +.+-++++|+||.+...
T Consensus 105 ~~~v~i~~~-----~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 105 LREVSIGID-----PYEVFEDADWALLIGAK 130 (387)
T ss_pred cCceEEecC-----CHHHhCCCCEEEECCCC
Confidence 2 2222222 34568999999988653
No 144
>KOG0069|consensus
Probab=95.41 E-value=0.061 Score=50.02 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=51.6
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
.+..++|+|+|+|+||.++|+.|...| ..| .+. +|+-.. -+... +.+..
T Consensus 159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i-~y~----------~r~~~~---------~~~~~----~~~~~------ 207 (336)
T KOG0069|consen 159 DLEGKTVGILGLGRIGKAIAKRLKPFG-CVI-LYH----------SRTQLP---------PEEAY----EYYAE------ 207 (336)
T ss_pred cccCCEEEEecCcHHHHHHHHhhhhcc-cee-eee----------cccCCc---------hhhHH----Hhccc------
Confidence 567899999999999999999999977 433 322 222010 01111 11111
Q ss_pred ecCCCcchhhhcCCCcEEEEc-CCCHHHHHHHHHHHH
Q psy9587 193 ETKVDEISEEFVHGFDVVIAT-SCNPNQLIKIDDFCR 228 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~-~d~~~~r~~In~~c~ 228 (236)
.....+++.++|+||.| ..+.+++..+|+-.-
T Consensus 208 ----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~ 240 (336)
T KOG0069|consen 208 ----FVDIEELLANSDVIVVNCPLTKETRHLINKKFI 240 (336)
T ss_pred ----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHH
Confidence 12235678889987655 588999999987443
No 145
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.39 E-value=0.047 Score=49.50 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=28.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+|+|+|+|++|+.++..|+.+|. .++++..+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 468999999999999999999995 577887665
No 146
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.36 E-value=0.036 Score=50.73 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=25.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
+|+|+|+|++||.++-.|+++| ..++++-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 5899999999999999999999 6666643
No 147
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.35 E-value=0.036 Score=51.03 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D 149 (236)
+|.|||+|.||+.+|..|+.-+++ .+.|+|-.
T Consensus 2 KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred eEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 588999999999999999999999 99999943
No 148
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.35 E-value=0.048 Score=49.64 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=48.0
Q ss_pred EEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc--eEEEEecCCC
Q psy9587 121 TGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV--EVTSNETKVD 197 (236)
Q Consensus 121 IVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v--~I~~~~~~l~ 197 (236)
|||+|.||+.+|..|+..|+ ++|.|+|-. ..|++..+..|....+.. .++...
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~--------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~---- 56 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN--------------------KDKAEGEAMDLQHAASFLPTPKKIRS---- 56 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC--------------------CChhhHHHHHHHHhhcccCCCeEEec----
Confidence 68999999999999999998 469998831 224555566666654322 122221
Q ss_pred cchhhhcCCCcEEEEcCCC
Q psy9587 198 EISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 198 ~~~~~~l~~~DlVI~~~d~ 216 (236)
.+.+-++++|+||.+...
T Consensus 57 -~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 57 -GDYSDCKDADLVVITAGA 74 (299)
T ss_pred -CCHHHHCCCCEEEECCCC
Confidence 123568999999988753
No 149
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.065 Score=51.56 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=29.7
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+..++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 345679999999999999999999998 7888883
No 150
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.31 E-value=0.012 Score=52.68 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=28.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+|+|||+|.+|+.+|..|+..|.. ++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCH
Confidence 4689999999999999999999974 88888664
No 151
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.30 E-value=0.018 Score=47.35 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=56.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC-
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK- 195 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~- 195 (236)
.+|.+||+|..|+.++++|+..|.. ++++|.+.-....+ ... |-..++..++.+.+- ++-+......
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~-~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~ 69 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEAL-AEA--------GAEVADSPAEAAEQA--DVVILCVPDDD 69 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHH-HHT--------TEEEESSHHHHHHHB--SEEEE-SSSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhh-HHh--------hhhhhhhhhhHhhcc--cceEeecccch
Confidence 3689999999999999999999986 78888553222222 100 111111122222222 2223322221
Q ss_pred -CCc---c--hhhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587 196 -VDE---I--SEEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 196 -l~~---~--~~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I 235 (236)
+.+ . -...+..=++||+++ .+++....+.+.+..+|+.||
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 000 0 112234457788775 578889999999999887765
No 152
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.29 E-value=0.052 Score=49.01 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=28.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D 149 (236)
.+|+|||+|.+|+.++..|...|. .+++++|.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 468999999999999999999997 468888854
No 153
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.28 E-value=0.069 Score=50.32 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=61.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
...+|+|+|+|.+|..+++.|...|.. ++++|.|.=. .+.+.+..+.+. ...+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~~------------------------~~~~~~~~~~~~--~i~g 282 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPER------------------------AEELAEELPNTL--VLHG 282 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHH------------------------HHHHHHHCCCCe--EEEC
Confidence 456899999999999999999998886 7888855311 112222222322 3333
Q ss_pred CCCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcE
Q psy9587 195 KVDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKIS 234 (236)
Q Consensus 195 ~l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~ 234 (236)
+..... ...+.++|.||.++++......+...|++.+.+-
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ 325 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKK 325 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCe
Confidence 333221 2346789999999887777777777888877653
No 154
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.28 E-value=0.17 Score=45.35 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=32.0
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.++.++|+|.|.|.+|+.+++.|...|..-+.+.|.
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 467789999999999999999999999887778773
No 155
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.26 E-value=0.085 Score=50.34 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=63.4
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT 190 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~ 190 (236)
+++..+|++.|+|+.|..+++.|..+|+. +|.++|.--+-..+- .-+ +.++.|...+.+...... +
T Consensus 196 ~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r---~~~----~~~~~k~~~a~~~~~~~~---~-- 263 (432)
T COG0281 196 KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGR---EDL----TMNQKKYAKAIEDTGERT---L-- 263 (432)
T ss_pred CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCC---ccc----ccchHHHHHHHhhhcccc---c--
Confidence 46677899999999999999999999998 999999554322222 100 245566655433322221 1
Q ss_pred EEecCCCcchhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcEEC
Q psy9587 191 SNETKVDEISEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 191 ~~~~~l~~~~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~I~ 236 (236)
.+.+.+.|++|.|... .-+..++.+++.. |+||
T Consensus 264 ----------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIf 297 (432)
T COG0281 264 ----------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIF 297 (432)
T ss_pred ----------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEe
Confidence 1145678888877653 4455566666655 6654
No 156
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.26 E-value=0.05 Score=48.61 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=27.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|+|||+|.+|+.++..|...|. ++.++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 58899999999999999999986 58888864
No 157
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.21 E-value=0.13 Score=47.30 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=51.7
Q ss_pred cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..+|+|+|+|+.|...+..|.. .|+.++++++.+ ..|++.+++++++.. .+++....
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~--------------------~~~a~~l~~~~~~~~-g~~v~~~~- 189 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD--------------------AAKAEAYAADLRAEL-GIPVTVAR- 189 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC--------------------HHHHHHHHHHHhhcc-CceEEEeC-
Confidence 3579999999999999999985 578899997632 126667777766433 23333221
Q ss_pred CCCcchhhhcCCCcEEEEcCCC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
.-.+.+.++|+||.|+..
T Consensus 190 ----d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 190 ----DVHEAVAGADIIVTTTPS 207 (330)
T ss_pred ----CHHHHHccCCEEEEeeCC
Confidence 123556789999998765
No 158
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.20 E-value=0.059 Score=47.71 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=27.2
Q ss_pred EEEEcC-ChhHHHHHHHHHHhC--C-ceEEEeeCCc
Q psy9587 119 YSTGPL-TRVGAEIAKNIILSG--V-KSVCLLDSGV 150 (236)
Q Consensus 119 VlIVG~-GgvGsevak~La~~G--V-g~I~LvD~D~ 150 (236)
|.|||+ |.+|+.++..|+..| . .+|.|+|-+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 578999 999999999999998 4 5799998543
No 159
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.19 E-value=0.1 Score=49.84 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=62.4
Q ss_pred eEEEEcCChhHH-HHHHHHHH----hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 118 VYSTGPLTRVGA-EIAKNIIL----SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 118 ~VlIVG~GgvGs-evak~La~----~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+|.|||+|++-+ .+.+.|+. .++++|+|+|-|. +..| ..- ...+.+.+.+..+.++++..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl-~~v------------~~~~~~~~~~~~~~~~v~~t 66 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKL-EIV------------GALAKRMVKKAGLPIKVHLT 66 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHH-HHH------------HHHHHHHHHhhCCCeEEEEe
Confidence 578999999755 56666665 5678999999875 3334 111 22344555666666666654
Q ss_pred ecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587 193 ETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK 232 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i 232 (236)
.. -.+.+.++|+||.+. ...+.+..-.++..++|+
T Consensus 67 ~d-----~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi 103 (419)
T cd05296 67 TD-----RREALEGADFVFTQIRVGGLEARALDERIPLKHGV 103 (419)
T ss_pred CC-----HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC
Confidence 33 346688999999885 455566566666666654
No 160
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.16 E-value=0.039 Score=46.11 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=33.1
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK 153 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~ 153 (236)
.+..++|+|+|+|.||.++|+.|...|+ ++..+|...-..
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~ 72 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE 72 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh
Confidence 5678899999999999999999999999 688888766543
No 161
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.13 E-value=0.039 Score=49.20 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=26.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 48999999999999999999985 4888775
No 162
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.12 Score=49.13 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=54.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV 196 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l 196 (236)
-.|+|+|.|+.|-.+|+.|...|.. ++..|... +. + ..+.|.+.++.+.+.. +
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~~----~~--------------~----~~~~l~~~~~g~~~~~--~-- 59 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIP-FAVMDSRE----QP--------------P----GLDTLAREFPDVELRC--G-- 59 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCe-EEEEeCCC----Cc--------------h----hHHHHHhhcCCcEEEe--C--
Confidence 4689999999999999999999984 78877322 01 0 1123444344444332 2
Q ss_pred CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 197 DEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 197 ~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
..+.+.+.++|+||.+..-+... -.-..++++++|++
T Consensus 60 -~~~~~~~~~~d~vV~sp~i~~~~-p~~~~a~~~~i~i~ 96 (448)
T PRK03803 60 -GFDCELLVQASEIIISPGLALDT-PALRAAAAMGIEVI 96 (448)
T ss_pred -CCChHHhcCCCEEEECCCCCCCC-HHHHHHHHCCCcEE
Confidence 12234567899998876322221 23445567788875
No 163
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.03 E-value=0.18 Score=43.41 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=49.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCC--CceEEEEec
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNP--NVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp--~v~I~~~~~ 194 (236)
+|+||| +|.+|+.++..|+..| .+++++|.+. .|++.+++....... .+.+.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~--------------------~~~~~l~~~~~~~~~~~g~~~~~~~~ 60 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL--------------------EKAEEAAAKALEELGHGGSDIKVTGA 60 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH--------------------HHHHHHHHHHHhhccccCCCceEEEe
Confidence 478997 8999999999999998 4677766322 122222222211111 011111111
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC 227 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c 227 (236)
...+.+.++|+||.|+-.......+.++.
T Consensus 61 ----~~~ea~~~aDvVilavp~~~~~~~l~~l~ 89 (219)
T TIGR01915 61 ----DNAEAAKRADVVILAVPWDHVLKTLESLR 89 (219)
T ss_pred ----ChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence 12345678899999988777666666654
No 164
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.03 E-value=0.11 Score=47.44 Aligned_cols=33 Identities=18% Similarity=0.052 Sum_probs=28.3
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
....|+|+|+|++|..++..+...|+ ++..++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 45689999999999999999999999 5777775
No 165
>PRK05442 malate dehydrogenase; Provisional
Probab=95.03 E-value=0.037 Score=51.12 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=28.5
Q ss_pred cceEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEeeC
Q psy9587 116 IYVYSTGPL-TRVGAEIAKNIILSGV-K-----SVCLLDS 148 (236)
Q Consensus 116 ~~~VlIVG~-GgvGsevak~La~~GV-g-----~I~LvD~ 148 (236)
-.+|.|||+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 357899998 9999999999998888 4 6999884
No 166
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.02 E-value=0.048 Score=48.99 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+|+|||+|.+|+.++..|+..|.. ++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCE-EEEEECCH
Confidence 589999999999999999999875 78888653
No 167
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.01 E-value=0.37 Score=43.66 Aligned_cols=35 Identities=6% Similarity=-0.002 Sum_probs=27.8
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhC-CceEEEeeCC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSG-VKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~G-Vg~I~LvD~D 149 (236)
+.++|+|.| +|++|+.+++.|+..| ..+++++|.+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 346788888 5899999999999987 4578887744
No 168
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.98 E-value=0.097 Score=50.04 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=56.0
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+.++|+|+|.|..|..+|+.|...|. .+++.|.+.-+ .. . ...+.|.+. .+.+ ...
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~--~~--~---------------~~~~~l~~~--gi~~--~~~ 68 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE--EL--G---------------EVSNELKEL--GVKL--VLG 68 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc--cc--h---------------HHHHHHHhC--CCEE--EeC
Confidence 44689999999999999999999997 58888854311 11 0 011223332 2222 222
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.. ..+.+.++|+||.+..-... .-+-..|++.+||++
T Consensus 69 ~~---~~~~~~~~dlVV~Spgi~~~-~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 69 EN---YLDKLDGFDVIFKTPSMRID-SPELVKAKEEGAYIT 105 (458)
T ss_pred CC---ChHHhccCCEEEECCCCCCC-chHHHHHHHcCCcEE
Confidence 11 13445789999987532222 234555677888875
No 169
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.96 E-value=0.13 Score=46.64 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=27.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+|+|+|+|..|+.+++.|+..|. .++++|.+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 368999999999999999999996 57888854
No 170
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.95 E-value=0.14 Score=45.04 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=21.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV 140 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV 140 (236)
+|.|||+|.+|+.+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 48999999999999999999885
No 171
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.94 E-value=0.11 Score=47.51 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+|.|||+|.+|+.+|..|+..|.+.+.++|-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 6899999999999999999999878999995
No 172
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.84 E-value=0.19 Score=45.64 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=30.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
...+|+|+|+|++|..++..+...|+.++.++|..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~ 203 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS 203 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 45689999999999999999999999888887743
No 173
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.26 Score=42.43 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=49.3
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
++.++|+|.|+ ||+|.++++.|+..|.. +.++|.+. .+.+.+++.+...++..++..+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDA--------------------ALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCH--------------------HHHHHHHHHHHhccCCceEEEE
Confidence 45678889994 69999999999999975 66766321 2334445555544444455555
Q ss_pred ecCCCcch--hh-------hcCCCcEEEEcC
Q psy9587 193 ETKVDEIS--EE-------FVHGFDVVIATS 214 (236)
Q Consensus 193 ~~~l~~~~--~~-------~l~~~DlVI~~~ 214 (236)
..++++.. .. .+...|++|.+.
T Consensus 64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 94 (260)
T PRK07063 64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNA 94 (260)
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence 55554321 11 123567777664
No 174
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.81 E-value=0.19 Score=48.47 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=28.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|+|+|+.|..+|+.|...|. +++..|..
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 34578999999999999999999998 47887843
No 175
>PRK07680 late competence protein ComER; Validated
Probab=94.81 E-value=0.13 Score=45.67 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=25.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~ 148 (236)
+|.|||+|.+|+.++..|...|. ..+.++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 47899999999999999999985 35666654
No 176
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.80 E-value=0.24 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=18.6
Q ss_pred eEEEEcCChhHHHHHHHHHH
Q psy9587 118 VYSTGPLTRVGAEIAKNIIL 137 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~ 137 (236)
+|.|+|+|.||..+++.|..
T Consensus 2 rVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 58899999999999999987
No 177
>PRK09242 tropinone reductase; Provisional
Probab=94.73 E-value=0.4 Score=41.20 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=54.5
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
++.++++|+|+ |++|..+++.|+..|.. +.+++.+. .+.+.+.+.+...+|..++..+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~--------------------~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDA--------------------DALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCH--------------------HHHHHHHHHHHhhCCCCeEEEE
Confidence 35568889985 79999999999999974 77766321 1334456666666677777777
Q ss_pred ecCCCcch---------hhhcCCCcEEEEcCC
Q psy9587 193 ETKVDEIS---------EEFVHGFDVVIATSC 215 (236)
Q Consensus 193 ~~~l~~~~---------~~~l~~~DlVI~~~d 215 (236)
..++.+.. .+.+...|+||.+..
T Consensus 66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 66665421 122456788887764
No 178
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.22 Score=44.92 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=26.8
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++++|.| .+|+|.++++.|+..|. ++.+++.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R 46 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR 46 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 3456788888 55999999999999996 4666653
No 179
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.72 E-value=0.26 Score=43.86 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=30.4
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+.++|+|+|+||+|..++..|+..|. +++++|.+.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 45689999999999999999999996 799988653
No 180
>PLN00106 malate dehydrogenase
Probab=94.72 E-value=0.17 Score=46.77 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=31.1
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCc
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~ 150 (236)
...+|+|+|+ |.||+.++..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3468999999 9999999999998888 4799999655
No 181
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.67 E-value=0.26 Score=43.90 Aligned_cols=34 Identities=24% Similarity=0.095 Sum_probs=27.6
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 4557889999 57999999999999997 4666654
No 182
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.64 E-value=0.086 Score=52.44 Aligned_cols=86 Identities=10% Similarity=0.209 Sum_probs=61.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV 196 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l 196 (236)
.+|+|+|+|.+|..+++.|...|+. ++++|.|.-. + +.+++. . ..++.++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~--------------------v----~~~~~~--g--~~v~~GDa 451 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISA--------------------V----NLMRKY--G--YKVYYGDA 451 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHH--------------------H----HHHHhC--C--CeEEEeeC
Confidence 4789999999999999999999996 8888966421 1 122221 1 23444444
Q ss_pred Ccch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587 197 DEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS 231 (236)
Q Consensus 197 ~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ 231 (236)
++.. ..-++++|++|.++++.+....+-..+++.+
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 4322 2346789999999999999988888888764
No 183
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.64 E-value=0.078 Score=48.22 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=28.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+|+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGA-DVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC-cEEEEecHH
Confidence 58999999999999999999996 488888653
No 184
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.62 E-value=0.045 Score=49.72 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=27.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+|.|+|+|++|+.++..|+..|. .+++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence 47899999999999999999994 478888654
No 185
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.60 E-value=0.22 Score=37.57 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhhCCCceEEEE--ecCCCcch---hhhcCCCcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587 171 NRAKSSEARAQNLNPNVEVTSN--ETKVDEIS---EEFVHGFDVVIATSC--NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 171 ~Kaea~~~~L~~inp~v~I~~~--~~~l~~~~---~~~l~~~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~ 236 (236)
......++.+.+. +.+...+ ........ +..++++|+||..+| +......+.+.|.+.+||++|
T Consensus 10 ~~~~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 10 DRERRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred ccHHHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 3445566667775 3466666 33333322 557889999999887 578899999999999999986
No 186
>KOG2014|consensus
Probab=94.57 E-value=0.011 Score=54.04 Aligned_cols=26 Identities=50% Similarity=0.596 Sum_probs=21.3
Q ss_pred cccccChhhHHhhhhcccccCCCCCc
Q psy9587 11 TAMELTEDEAELYDRQIRLTPLPLWN 36 (236)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (236)
+++||||+|..|||||||+--|--|+
T Consensus 2 ~~~else~E~alYDRQIRLWG~~AQ~ 27 (331)
T KOG2014|consen 2 KGEELSEQEIALYDRQIRLWGLEAQR 27 (331)
T ss_pred chhhhhHHHHHHHHHHHHHccHHHHH
Confidence 57899999999999999986554444
No 187
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=94.48 E-value=0.24 Score=46.31 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=34.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceE--EEeeCCc--ccccCCCCCccccCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSV--CLLDSGV--VTKEDVNTAQFLAPH 165 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I--~LvD~D~--Ve~sNL~~rq~l~~~ 165 (236)
.+|.|||+||-||.++..|...|+..+ ..+|.|. ++.++. .+.++++.
T Consensus 18 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a-~~ki~iG~ 69 (349)
T TIGR00065 18 AKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKA-DKKILIGK 69 (349)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-CeEEEcCC
Confidence 568889999999999999999998644 4467775 443444 33344443
No 188
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=94.48 E-value=0.26 Score=44.92 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=33.3
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCc--ccccCCCCCccccCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGV--VTKEDVNTAQFLAPH 165 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~--Ve~sNL~~rq~l~~~ 165 (236)
+|.|||+||-|+.++..|.+.|+. .+..+|.|. ++.+.. .+-+++.+
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~-~~k~~ig~ 52 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKA-PNKIQLGK 52 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCC-CcEEEcCC
Confidence 578899999999999999999986 355667765 333333 33334443
No 189
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.48 E-value=0.46 Score=40.53 Aligned_cols=90 Identities=18% Similarity=0.208 Sum_probs=58.2
Q ss_pred EEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 119 YSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 119 VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
|+|+|+ |.+|..++..|...|.. ++++ .|.. .....+.|+.. .+++. ..++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l-----------~R~~-----------~~~~~~~l~~~--g~~vv--~~d~~ 53 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL-----------VRDP-----------SSDRAQQLQAL--GAEVV--EADYD 53 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE-----------ESSS-----------HHHHHHHHHHT--TTEEE--ES-TT
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE-----------Eecc-----------chhhhhhhhcc--cceEe--ecccC
Confidence 688995 89999999999996654 4442 2321 12233445543 44443 44554
Q ss_pred cc-h-hhhcCCCcEEEEcCC---C--HHHHHHHHHHHHHcCCcEE
Q psy9587 198 EI-S-EEFVHGFDVVIATSC---N--PNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 198 ~~-~-~~~l~~~DlVI~~~d---~--~~~r~~In~~c~~~~ip~I 235 (236)
+. . .+.++++|.||.++. . ......+.+.|.+.|++.+
T Consensus 54 ~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 54 DPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp -HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred CHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 32 2 567899999999887 3 4566788899999998775
No 190
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.47 E-value=0.43 Score=42.65 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=50.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+|.|||+|.+|+.+++.|...|. .++.++|.+.- .|.+ .+....+.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~-------------------~~~~----~l~~~~~~~~~----- 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN-------------------EHFN----QLYDKYPTVEL----- 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH-------------------HHHH----HHHHHcCCeEE-----
Confidence 58899999999999999999883 45666653210 1111 12222222221
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC 227 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c 227 (236)
.....+.+.++|+||.|+-+......+.++.
T Consensus 55 --~~~~~e~~~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 55 --ADNEAEIFTKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred --eCCHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence 1112345678899999988777777676664
No 191
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=94.46 E-value=0.1 Score=48.06 Aligned_cols=33 Identities=30% Similarity=0.237 Sum_probs=28.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..+|.|||+|..|+-+|..++.+|.. +++.|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence 46799999999999999999996665 8888865
No 192
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=94.42 E-value=0.35 Score=38.47 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=53.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
++|+|+| ++|+|-++++.|+..|..++.+++.+ . -..+.+.+...+...+ .++.....+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~----~--------------~~~~~~~l~~~l~~~~--~~~~~~~~D 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS----E--------------DSEGAQELIQELKAPG--AKITFIECD 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS----C--------------HHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec----c--------------cccccccccccccccc--ccccccccc
Confidence 3578888 67999999999999999998888754 0 1124555666666544 566776666
Q ss_pred CCcch---------hhhcCCCcEEEEcCC
Q psy9587 196 VDEIS---------EEFVHGFDVVIATSC 215 (236)
Q Consensus 196 l~~~~---------~~~l~~~DlVI~~~d 215 (236)
+.... .+.....|++|.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 61 LSDPESIRALIEEVIKRFGPLDILINNAG 89 (167)
T ss_dssp TTSHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55321 123457899987764
No 193
>PRK13018 cell division protein FtsZ; Provisional
Probab=94.39 E-value=0.27 Score=46.48 Aligned_cols=71 Identities=8% Similarity=0.127 Sum_probs=45.0
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCc--ccccCCCCCccccCCC-----------cCCChHHHHHHHH
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGV--VTKEDVNTAQFLAPHE-----------DIGKNRAKSSEAR 179 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~--Ve~sNL~~rq~l~~~~-----------dIGk~Kaea~~~~ 179 (236)
...+|.|||+||-|+.++..|...|+. .+..++.|. ++.+.. ...++++.. ++|+.-++...+.
T Consensus 27 ~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a-~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~ 105 (378)
T PRK13018 27 GNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKA-DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDE 105 (378)
T ss_pred CCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCC-CcEEecCCccCCCCCCCCChHHHHHHHHHHHHH
Confidence 345788999999999999999999986 456677776 444444 333444331 2344445555555
Q ss_pred HHhhCCC
Q psy9587 180 AQNLNPN 186 (236)
Q Consensus 180 L~~inp~ 186 (236)
+++.-..
T Consensus 106 I~~~le~ 112 (378)
T PRK13018 106 IKEVLKG 112 (378)
T ss_pred HHHHhcC
Confidence 5555433
No 194
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.07 Score=48.39 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=31.4
Q ss_pred ccccceEEEEcCCh-hHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTR-VGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~Gg-vGsevak~La~~GVg~I~LvD~ 148 (236)
.++.++|+|+|.|+ +|..++..|...|. .+++++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 45678899999999 99999999999999 8999875
No 195
>PRK07574 formate dehydrogenase; Provisional
Probab=94.33 E-value=0.21 Score=47.30 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=30.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+..++|+|||+|.+|..+|+.|...|+. +..+|..
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~ 224 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRH 224 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCC
Confidence 46778999999999999999999999985 6677743
No 196
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.28 E-value=0.069 Score=50.75 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.8
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+...+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 46678999999999999999999999999999874
No 197
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.27 E-value=0.38 Score=46.10 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=62.1
Q ss_pred eEEEEcCChh-HHHHHHHHH----HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH-HhhCCCceEEE
Q psy9587 118 VYSTGPLTRV-GAEIAKNII----LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA-QNLNPNVEVTS 191 (236)
Q Consensus 118 ~VlIVG~Ggv-Gsevak~La----~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L-~~inp~v~I~~ 191 (236)
+|.|||+|++ .-.+++.|+ ...+++|+|+|-|. +-+ - .+..+++++ .+..+.++++.
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl----~----------~v~~l~~~~~~~~g~~~~v~~ 64 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERL----D----------IILTIAKRYVEEVGADIKFEK 64 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHH----H----------HHHHHHHHHHHhhCCCeEEEE
Confidence 5789999986 335666666 35568999999664 222 0 133344444 56666666666
Q ss_pred EecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587 192 NETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK 232 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i 232 (236)
... -.+-+.++|+||.+. +..+.+..=.+++.++|+
T Consensus 65 ttD-----~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~ 102 (425)
T cd05197 65 TMD-----LEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGV 102 (425)
T ss_pred eCC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCc
Confidence 543 346789999999885 677778777778888764
No 198
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.27 Score=41.87 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=48.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
++|+|.| .|++|..+++.|+..|. ++.+++.+. .+.+.+...+...+|..++.....+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-DLALCARRT--------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH--------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 4678888 77999999999999995 577766432 1223344555555666666666666
Q ss_pred CCcch---------hhhcCCCcEEEEcC
Q psy9587 196 VDEIS---------EEFVHGFDVVIATS 214 (236)
Q Consensus 196 l~~~~---------~~~l~~~DlVI~~~ 214 (236)
+++.. ...+...|+||.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 55421 11234567777664
No 199
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.21 E-value=0.37 Score=45.05 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=63.4
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc---cCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK---EDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~---sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
...|.|+||||+|-.+..-+..+|.++|.-+|-..-.. .-+ +-..++.+.+.+ -+.+.+.++.+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f-GAT~~vn~~~~~-----~vv~~i~~~T~------- 252 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF-GATHFVNPKEVD-----DVVEAIVELTD------- 252 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc-CCceeecchhhh-----hHHHHHHHhcC-------
Confidence 46899999999999999999999999999998543221 112 222222222222 13333333332
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.+.|.+|+|+.+......--+.|++-|.-++
T Consensus 253 ------------gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 253 ------------GGADYAFECVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred ------------CCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence 1688899999998888777778887666544
No 200
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.21 E-value=0.27 Score=43.90 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=23.0
Q ss_pred eEEEEcCChhHHHHHHHHHHh-CCceEEEee
Q psy9587 118 VYSTGPLTRVGAEIAKNIILS-GVKSVCLLD 147 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~-GVg~I~LvD 147 (236)
+|+|+|||.+|..+++.|... ++.-..+++
T Consensus 3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~ 33 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIV 33 (265)
T ss_pred EEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence 689999999999999999875 444333444
No 201
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.20 E-value=0.57 Score=46.61 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=49.1
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-------CC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN-------PN 186 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in-------p~ 186 (236)
..++|+|.|+ |++|..+++.|+..|.. +++++.+. .|.+.+.+.+.++. +.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~--------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSA--------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCH--------------------HHHHHHHHHhhhhcccccccccc
Confidence 4567899995 89999999999999974 55544321 12222333332211 11
Q ss_pred ceEEEEecCCCcch--hhhcCCCcEEEEcCC
Q psy9587 187 VEVTSNETKVDEIS--EEFVHGFDVVIATSC 215 (236)
Q Consensus 187 v~I~~~~~~l~~~~--~~~l~~~DlVI~~~d 215 (236)
-+++.+..++.+.. ...+.++|+||.|..
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 23556666665432 445788999998864
No 202
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.20 E-value=0.089 Score=48.88 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=27.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+|+|||+|.+|+.+++.|...|. .+.++|.|.
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~ 33 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP 33 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence 58999999999999999999997 466777543
No 203
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.18 E-value=0.35 Score=45.85 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=55.5
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..++|+|+|.|+.|..+|+.|+..|.. +++.|.+... . ..++|.+....+. .+..
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~-v~~~d~~~~~-------------------~---~~~~l~~~~~gi~--~~~g 58 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAE-VAAYDAELKP-------------------E---RVAQIGKMFDGLV--FYTG 58 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCc-------------------h---hHHHHhhccCCcE--EEeC
Confidence 346789999999999999999999974 7777743210 0 0122433222333 3332
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.. ....+.++|+||.+..-.... -+-..|+++++|++
T Consensus 59 ~~---~~~~~~~~d~vv~spgi~~~~-p~~~~a~~~~i~v~ 95 (445)
T PRK04308 59 RL---KDALDNGFDILALSPGISERQ-PDIEAFKQNGGRVL 95 (445)
T ss_pred CC---CHHHHhCCCEEEECCCCCCCC-HHHHHHHHcCCcEE
Confidence 22 223456899999886432222 23445577888875
No 204
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.18 E-value=0.073 Score=44.80 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=27.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT 152 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve 152 (236)
+|+|||+|..|..+|..+++.|.. ++++|.+.-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHH
Confidence 489999999999999999999976 9999976543
No 205
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.17 E-value=0.34 Score=43.21 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=21.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGV 140 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GV 140 (236)
-+|.+||+|..|..+++.|...|+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC
Confidence 368999999999999999999983
No 206
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.46 Score=41.06 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=26.8
Q ss_pred ccceEEEEcC-C-hhHHHHHHHHHHhCCceEEEee
Q psy9587 115 KIYVYSTGPL-T-RVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 115 k~~~VlIVG~-G-gvGsevak~La~~GVg~I~LvD 147 (236)
+.++++|.|+ | |+|..+++.|+..|.. +.+.|
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~ 49 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD 49 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence 4568899996 5 7999999999999986 66665
No 207
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.17 E-value=0.13 Score=50.38 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=29.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
-+|+|+|+|.+|..+++.|...|.. ++++|.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSR 450 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCC-EEEEECCH
Confidence 4688999999999999999999975 88889664
No 208
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.16 E-value=0.24 Score=46.66 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=32.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 156 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL 156 (236)
+|.|||+|-+|..+|..|+..|.. ++++|.+.-....+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~-V~~~d~~~~~v~~l 39 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHE-VTGVDIDQEKVDKL 39 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCe-EEEEECCHHHHHHh
Confidence 488999999999999999999975 88899876555556
No 209
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.65 Score=40.11 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=52.8
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
++.++++|.|+ ||+|.++++.|+..|.. +.+++.+. .+.+.+.+.+.+.++..++..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 64 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE--------------------ERLASAEARLREKFPGARLLAA 64 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH--------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 45578899996 58999999999999986 66666321 2334455566666666666666
Q ss_pred ecCCCcch---------hhhcCCCcEEEEcCC
Q psy9587 193 ETKVDEIS---------EEFVHGFDVVIATSC 215 (236)
Q Consensus 193 ~~~l~~~~---------~~~l~~~DlVI~~~d 215 (236)
..++.+.. .+.+...|++|.+..
T Consensus 65 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 65 RCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 65655421 112345788887753
No 210
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.13 E-value=0.14 Score=49.68 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+|.|||+|.+|+.+|.+|+..|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 468999999999999999999998 588988653
No 211
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.12 E-value=0.28 Score=43.08 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=46.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+|.+||+|.+|+.+++.|...|. ..|++++ +|. ..|++. +.+. .+.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~----------~r~---------~~~~~~----~~~~--g~~~~---- 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTAD----------DSN---------PARRDV----FQSL--GVKTA---- 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe----------CCC---------HHHHHH----HHHc--CCEEe----
Confidence 47899999999999999999885 2455542 111 112222 2222 22221
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC 227 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c 227 (236)
....+..+++|+||.|+.+......+.+++
T Consensus 53 ---~~~~e~~~~aDvVil~v~~~~~~~vl~~l~ 82 (266)
T PLN02688 53 ---ASNTEVVKSSDVIILAVKPQVVKDVLTELR 82 (266)
T ss_pred ---CChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence 112344567899999986666666665553
No 212
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.08 E-value=0.42 Score=42.70 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=25.0
Q ss_pred eEEEEc-CChhHHHHHHHHHH-hCCceEEEee
Q psy9587 118 VYSTGP-LTRVGAEIAKNIIL-SGVKSVCLLD 147 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~-~GVg~I~LvD 147 (236)
+|+|+| +|..|..+++.+.. .++.-+.++|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 689999 59999999999985 5666667777
No 213
>PRK09330 cell division protein FtsZ; Validated
Probab=94.05 E-value=0.32 Score=46.10 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=57.8
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCce--EEEeeCCc--ccccCCCCCccccCCCc-----------CCChHHHHHHHHH
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKS--VCLLDSGV--VTKEDVNTAQFLAPHED-----------IGKNRAKSSEARA 180 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~--I~LvD~D~--Ve~sNL~~rq~l~~~~d-----------IGk~Kaea~~~~L 180 (236)
..+|-|||+||-|+.++..|...|+.. +..++.|. ++.+.. ..-+++...- +|+-=++...+.+
T Consensus 13 ~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a-~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~e~I 91 (384)
T PRK09330 13 GAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKA-PVKIQLGEKLTRGLGAGANPEVGRKAAEESREEI 91 (384)
T ss_pred CCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCC-CeEEEcCCcccccCCCCCCHHHHHHHHHHHHHHH
Confidence 356788999999999999999999864 55556655 444444 3333443321 1111111111111
Q ss_pred HhhCCCceEEEEecCCCcchhhhcCCCcEEEEcCC------CHHHHHHHHHHHHHcCCcEE
Q psy9587 181 QNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC------NPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 181 ~~inp~v~I~~~~~~l~~~~~~~l~~~DlVI~~~d------~~~~r~~In~~c~~~~ip~I 235 (236)
.+.++++|+||.+.. +-.+. .|.+++++.+++.|
T Consensus 92 --------------------~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltv 131 (384)
T PRK09330 92 --------------------REALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTV 131 (384)
T ss_pred --------------------HHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEE
Confidence 234567888765532 23333 78888888887654
No 214
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.02 E-value=0.36 Score=48.33 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=30.4
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|+|||+|..|-..|..|++.|.. ++++|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 457899999999999999999999986 8998864
No 215
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.01 E-value=0.11 Score=39.76 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=25.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhC--CceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSG--VKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~G--Vg~I~LvD~D~ 150 (236)
+|+|||+|..|...+..+...+ +.-..++|.+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~ 36 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP 36 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH
Confidence 5899999999999999999883 33345667654
No 216
>PLN03139 formate dehydrogenase; Provisional
Probab=93.98 E-value=0.19 Score=47.56 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=31.2
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+..++|+|||+|.+|..+|+.|...|+. +..+|..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~ 231 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRL 231 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCC
Confidence 57788999999999999999999999986 6667754
No 217
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.97 E-value=0.4 Score=43.27 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=59.8
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
.+...++|.| .+|||-++|+.|++-|.. +.|+- |. +.|-+.++++|+..+ .+++..+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLva-----------R~---------~~kL~~la~~l~~~~-~v~v~vi 61 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVA-----------RR---------EDKLEALAKELEDKT-GVEVEVI 61 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEe-----------Cc---------HHHHHHHHHHHHHhh-CceEEEE
Confidence 3567889999 569999999999999988 44543 33 347788899999888 8899999
Q ss_pred ecCCCcch-hh-----hc---CCCcEEEEcCC
Q psy9587 193 ETKVDEIS-EE-----FV---HGFDVVIATSC 215 (236)
Q Consensus 193 ~~~l~~~~-~~-----~l---~~~DlVI~~~d 215 (236)
+-++++.+ .+ +. -..|++|.+.+
T Consensus 62 ~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 62 PADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred ECcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 88887643 11 11 25899998753
No 218
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.94 E-value=0.42 Score=46.92 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=30.6
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
...+|+|||+|.+|-..|..|.+.|.. ++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 457899999999999999999999985 88998543
No 219
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.92 E-value=0.13 Score=41.23 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=44.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
..+|.|||+|-+|..+++.|...|.. |.-+- +|. ...++++...-+...+..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~----------srs-------------~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHE-VVGVY----------SRS-------------PASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSE-EEEES----------SCH-------------H-HHHHHHC--TT---------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE----------eCC-------------cccccccccccccccccc----
Confidence 36789999999999999999999965 32221 222 123444555544432221
Q ss_pred CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587 196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCR 228 (236)
Q Consensus 196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~ 228 (236)
..+.+..+|+||.|+-+........+++.
T Consensus 62 ----~~~~~~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 62 ----LEEILRDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp ----TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred ----cccccccCCEEEEEechHHHHHHHHHHHH
Confidence 12456889999999855554444444443
No 220
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.89 E-value=0.14 Score=47.29 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=53.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV 196 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l 196 (236)
.+|+|+|+|..|+.++..|+..| .++++..+.-....+ +.... .....+.. .++.+. +..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i-~~~~~-~~~~l~~~---------~~l~~~--i~~----- 67 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDI-NDNHR-NSRYLGND---------VVLSDT--LRA----- 67 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHH-HhcCC-CcccCCCC---------cccCCC--eEE-----
Confidence 46899999999999999999998 456665443222233 22110 01111100 001111 111
Q ss_pred CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587 197 DEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229 (236)
Q Consensus 197 ~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~ 229 (236)
+....+.+.++|+||.|+-+...+..+.++...
T Consensus 68 t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~ 100 (341)
T PRK12439 68 TTDFAEAANCADVVVMGVPSHGFRGVLTELAKE 100 (341)
T ss_pred ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhh
Confidence 111224467889999999888888777777654
No 221
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.87 E-value=0.26 Score=46.22 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.5
Q ss_pred cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..+|+||| +|.+|+.+++.|...|.. ++++|.+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCC
Confidence 36799998 999999999999999954 8888854
No 222
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.84 E-value=0.3 Score=47.11 Aligned_cols=77 Identities=8% Similarity=0.049 Sum_probs=50.6
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHh-------CCc-eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhC-
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILS-------GVK-SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLN- 184 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~-------GVg-~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~in- 184 (236)
+..+|.|||+ |.||+.+|..|+.. |+. +|.++| +.+.|++..+-.|..-.
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD--------------------~~~~~a~G~amDL~daa~ 158 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE--------------------RSKQALEGVAMELEDSLY 158 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc--------------------CCcchhHHHHHHHHHhhh
Confidence 4578999999 99999999999987 442 355544 23345566666666554
Q ss_pred CCc-eEEEEecCCCcchhhhcCCCcEEEEcCCC
Q psy9587 185 PNV-EVTSNETKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 185 p~v-~I~~~~~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
|.. +|..... +.+-++++|+||.+...
T Consensus 159 ~~~~~v~i~~~-----~ye~~kdaDiVVitAG~ 186 (444)
T PLN00112 159 PLLREVSIGID-----PYEVFQDAEWALLIGAK 186 (444)
T ss_pred hhcCceEEecC-----CHHHhCcCCEEEECCCC
Confidence 332 2222222 34668999999988754
No 223
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.84 E-value=0.097 Score=47.13 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=33.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 156 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL 156 (236)
++|+|+|+||.+..++..|...|+.+|+|++.+.-....|
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 4789999999999999999999999999998765333333
No 224
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.83 E-value=0.4 Score=42.96 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=49.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+|.+||+|-+|..+++.|...|. .+|.++|.+. .+++. +.+.. .++ ..
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~--------------------~~~~~----l~~~~-g~~--~~-- 54 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV--------------------SNLKN----ASDKY-GIT--IT-- 54 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH--------------------HHHHH----HHHhc-CcE--Ee--
Confidence 58999999999999999999885 2355544211 12222 22211 122 11
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC 227 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c 227 (236)
....+.+.++|+||.|+-+......+.++.
T Consensus 55 ---~~~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 55 ---TNNNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred ---CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 112345678899999998777666676655
No 225
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.80 E-value=0.46 Score=49.89 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=56.1
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH--HHHHHHHHHhhCCCceEEEE
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR--AKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K--aea~~~~L~~inp~v~I~~~ 192 (236)
+.++|+|||+|..|...|..|++.|.. ++|+|.. ..+ +-...+.-.+.-.+| ++.-.+.+.+. .+++...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~----~~~-GG~l~yGIP~~rlp~~vi~~~i~~l~~~--Gv~f~~n 376 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF----HDL-GGVLRYGIPEFRLPNQLIDDVVEKIKLL--GGRFVKN 376 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC----CCC-CceEEccCCCCcChHHHHHHHHHHHHhh--cCeEEEe
Confidence 467899999999999999999999985 8898854 234 333333322333344 22233344444 3444332
Q ss_pred ecCCCcch-hhhcC-CCcEEEEcCCC
Q psy9587 193 ETKVDEIS-EEFVH-GFDVVIATSCN 216 (236)
Q Consensus 193 ~~~l~~~~-~~~l~-~~DlVI~~~d~ 216 (236)
..--.... .++.+ +||.||.|++.
T Consensus 377 ~~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 377 FVVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EEeccEEeHHHhccccCCEEEEeCCC
Confidence 21101112 33444 69999999875
No 226
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.79 E-value=0.2 Score=45.76 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=29.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
...+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3568999999999999999998999987877764
No 227
>KOG0022|consensus
Probab=93.76 E-value=0.3 Score=45.34 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=61.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC--Ccccc-cCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS--GVVTK-EDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS 191 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~--D~Ve~-sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~ 191 (236)
..+.|+|+|+|++|..+++---..|.++|.=+|- |.++. .-+ +---+.++.|.-+ .+.+.|.++-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f-GaTe~iNp~d~~~----~i~evi~EmT------- 259 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF-GATEFINPKDLKK----PIQEVIIEMT------- 259 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc-CcceecChhhccc----cHHHHHHHHh-------
Confidence 3478999999999999999999999999998882 22221 111 1111222222222 1222222221
Q ss_pred EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHc-CCcEE
Q psy9587 192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSK-SKISL 235 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~-~ip~I 235 (236)
-.++|.-++|+.+.+....--+.|++- |+.++
T Consensus 260 ------------dgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 260 ------------DGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred ------------cCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 157899999999999888888888765 55443
No 228
>PLN02477 glutamate dehydrogenase
Probab=93.76 E-value=0.49 Score=45.18 Aligned_cols=37 Identities=24% Similarity=0.120 Sum_probs=32.3
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++.++|+|.|+|.||..+|+.|...|..-+.+.|.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4677899999999999999999999998877687744
No 229
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.74 E-value=0.12 Score=46.39 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=26.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHHh--CCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D 149 (236)
+..+|.|||+|.+|..++++|... |+.-..++|.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 346799999999999999999864 44433455654
No 230
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.69 E-value=0.32 Score=43.05 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=24.3
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEee
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLD 147 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD 147 (236)
+|+|||+|.+|+.+++.|...|. .++.+.|
T Consensus 5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~ 37 (260)
T PTZ00431 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHT 37 (260)
T ss_pred EEEEECccHHHHHHHHHHHhCCCCCcceEEEEC
Confidence 58999999999999999999874 2355554
No 231
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.68 E-value=0.24 Score=47.80 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=57.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
...+|+|+|+|..|..+++.|...| ..+++.|..... .+. .-+ ....++++ ...+
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~-~~~--------------------~~~~~~i~--~~~g 60 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGL-AAQ--------------------PLLLEGIE--VELG 60 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cch-hhh--------------------hhhccCce--eecC
Confidence 3578999999999999999999999 558898866554 333 111 11122222 2222
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.. ..+.+..+|+||-+-.-+..-. +-+.+++.|+|++
T Consensus 61 ~~---~~~~~~~~d~vV~SPGi~~~~p-~v~~A~~~gi~i~ 97 (448)
T COG0771 61 SH---DDEDLAEFDLVVKSPGIPPTHP-LVEAAKAAGIEII 97 (448)
T ss_pred cc---chhccccCCEEEECCCCCCCCH-HHHHHHHcCCcEE
Confidence 22 1245688999998754221111 5556777888775
No 232
>PRK06199 ornithine cyclodeaminase; Validated
Probab=93.68 E-value=0.5 Score=44.55 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=55.8
Q ss_pred cceEEEEcCChhHHHHHHHHHHh--CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCc-eEEEE
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV-EVTSN 192 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v-~I~~~ 192 (236)
..+++|+|+|.-+-.-++.++.. ++.++.++|.+ ..|++.+++++.+..+.+ ++...
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~--------------------~~~a~~f~~~~~~~~~~~~~v~~~ 214 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG--------------------QKSLDSFATWVAETYPQITNVEVV 214 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC--------------------HHHHHHHHHHHHHhcCCCceEEEe
Confidence 36889999999999999998864 47788886622 247788888888876654 35543
Q ss_pred ecCCCcchhhhcCCCcEEEEcCCC
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
.. ..+.+.++|+|+.|+.+
T Consensus 215 ~s-----~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 215 DS-----IEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CC-----HHHHHcCCCEEEEccCC
Confidence 21 34667899999998853
No 233
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.68 E-value=0.2 Score=47.29 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=54.6
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+.++|+|+|.|++|..+|+.|+..|.. +.+.|.+... . ....+.|.+. .+++ ...
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~~~~---~-----------------~~~~~~l~~~--g~~~--~~~ 58 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGKPFS---E-----------------NPEAQELLEE--GIKV--ICG 58 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCCCcc---c-----------------hhHHHHHHhc--CCEE--EeC
Confidence 456789999999999999999999975 7777743211 0 0122334433 2232 221
Q ss_pred CCCcchhhhcC-CCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVH-GFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~-~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.. ..+.+. .+|+||.+..-... ..+-+.|++.++|++
T Consensus 59 ~~---~~~~~~~~~d~vV~s~gi~~~-~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 59 SH---PLELLDEDFDLMVKNPGIPYT-NPMVEKALEKGIPII 96 (447)
T ss_pred CC---CHHHhcCcCCEEEECCCCCCC-CHHHHHHHHCCCcEE
Confidence 11 112233 38999887632221 234566678888875
No 234
>PLN02427 UDP-apiose/xylose synthase
Probab=93.67 E-value=0.59 Score=43.16 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=27.1
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..+|+|.| +|-+|+.+++.|+..|--+++.+|.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 3445789999 5899999999999985335777774
No 235
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.63 E-value=0.95 Score=41.02 Aligned_cols=31 Identities=16% Similarity=0.062 Sum_probs=24.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+|+|.|+ |-+|+++++.|...|--+++.+|.
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 5889996 899999999999864235777663
No 236
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.61 E-value=0.34 Score=44.86 Aligned_cols=92 Identities=11% Similarity=0.109 Sum_probs=49.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHhCCceE-EEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 117 YVYSTGPL-TRVGAEIAKNIILSGVKSV-CLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 117 ~~VlIVG~-GgvGsevak~La~~GVg~I-~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
.+|+|+|+ |.+|.++++.|....--++ .+.|... . |+ .+.+..+..... ...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-----~------------g~--------~l~~~~~~~~~~-~~~ 56 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-----A------------GK--------PLSDVHPHLRGL-VDL 56 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-----c------------Cc--------chHHhCcccccc-cCc
Confidence 47899997 7899999999997633334 3444111 1 11 011111211100 011
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.+.+.....+.++|+|+.|+.+........+ |.+.|+.+|
T Consensus 57 ~~~~~~~~~~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VI 96 (343)
T PRK00436 57 VLEPLDPEILAGADVVFLALPHGVSMDLAPQ-LLEAGVKVI 96 (343)
T ss_pred eeecCCHHHhcCCCEEEECCCcHHHHHHHHH-HHhCCCEEE
Confidence 1111122244679999999988655555444 455777765
No 237
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.60 E-value=0.25 Score=44.55 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=58.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEecC-
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNETK- 195 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~~- 195 (236)
+|.|||+|.+|..++++|+..|.. ++++|.+.-...-+ . +.|...+....+-+++. .+++-+...+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~-v~v~dr~~~~~~~~-~--------~~g~~~~~s~~~~~~~~~~advVi~~vp~~~ 71 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHE-VVGYDVNQEAVDVA-G--------KLGITARHSLEELVSKLEAPRTIWVMVPAGE 71 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH-H--------HCCCeecCCHHHHHHhCCCCCEEEEEecCch
Confidence 488999999999999999999974 77888653211111 0 11211111122222221 133334433332
Q ss_pred CCcch-hh---hcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587 196 VDEIS-EE---FVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 196 l~~~~-~~---~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I 235 (236)
....- .+ .+..=.+||++. ..+.....+.+.+..+++.|+
T Consensus 72 ~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 72 VTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred HHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 11110 11 233336888884 456666777777777777654
No 238
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.64 Score=40.37 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=28.1
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4568899995 7999999999999998 57777643
No 239
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.57 E-value=0.24 Score=47.25 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=42.6
Q ss_pred eEEEEcCChhHHHHHH--HHH---HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 118 VYSTGPLTRVGAEIAK--NII---LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 118 ~VlIVG~GgvGsevak--~La---~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+|.|||+|++|...+. .++ .....++.|+|.|.=....+ ...+...+....+..+++..
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~----------------~~~~~~~~~~~~~~~~I~~t 65 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETV----------------EILAKKIVEELGAPLKIEAT 65 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHH----------------HHHHHHHHHhcCCCeEEEEe
Confidence 5889999999998665 454 22224799998543111111 11122223333333444422
Q ss_pred ecCCCcchhhhcCCCcEEEEcCC
Q psy9587 193 ETKVDEISEEFVHGFDVVIATSC 215 (236)
Q Consensus 193 ~~~l~~~~~~~l~~~DlVI~~~d 215 (236)
.. -.+.++++|+||.+..
T Consensus 66 tD-----~~eal~~AD~Vi~ai~ 83 (423)
T cd05297 66 TD-----RREALDGADFVINTIQ 83 (423)
T ss_pred CC-----HHHHhcCCCEEEEeeE
Confidence 21 2356789999998875
No 240
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.57 E-value=0.56 Score=44.91 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=27.7
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..+|+|.| .|-||+.+++.|...|.. +..+|.
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~ 151 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDN 151 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeC
Confidence 3567899999 589999999999999975 556663
No 241
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.56 E-value=0.19 Score=45.32 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=58.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|.|||+|..|+.++.+|+..|. ++.++|.+.-....+ .... . ....-.+.+.+.+ ..+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l-~~~g-~----~~~~s~~~~~~~~--~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAM-KEDR-T----TGVANLRELSQRL--SAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH-HHcC-C----cccCCHHHHHhhc--CCCCEEEEEcCchHH
Confidence 48999999999999999999996 477888765333333 1110 0 0000011111111 123444444333311
Q ss_pred cc----hhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcEE
Q psy9587 198 EI----SEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 198 ~~----~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~I 235 (236)
.. -...+..=++||++... +.....+.+.+...|+.|+
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~v 115 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLL 115 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEE
Confidence 11 11234444788888654 4555566667777777664
No 242
>PRK06046 alanine dehydrogenase; Validated
Probab=93.55 E-value=0.48 Score=43.47 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=48.2
Q ss_pred cceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..+|+|+|+|+.|...+..|. ..++.++.++|.+. .+++.+++.+.+..+ +++.....
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~--------------------~~~~~~~~~~~~~~~-~~v~~~~~ 187 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK--------------------SSAEKFVERMSSVVG-CDVTVAED 187 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH--------------------HHHHHHHHHHHhhcC-ceEEEeCC
Confidence 468999999999999999998 45778888877443 244555555554332 33333221
Q ss_pred CCCcchhhhcCCCcEEEEcCCC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
-.+.+. +|+|+.|+.+
T Consensus 188 -----~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 188 -----IEEACD-CDILVTTTPS 203 (326)
T ss_pred -----HHHHhh-CCEEEEecCC
Confidence 123444 8888888865
No 243
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.52 E-value=0.72 Score=41.92 Aligned_cols=34 Identities=9% Similarity=-0.128 Sum_probs=26.9
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|.|+ |.+|+++++.|+..|.. ++++|.+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~ 37 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLD 37 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCC
Confidence 3467899995 78999999999999964 6666644
No 244
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.51 E-value=0.18 Score=47.51 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=28.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+|+|+|.|++|..+|+.|...|. +++.+|.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~ 35 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKS 35 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 578999999999999999999997 58888843
No 245
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.49 E-value=0.12 Score=46.33 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=29.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..+|+|||+|..|+.+|..|+..|. .++++|.+.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 3579999999999999999999998 599998654
No 246
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.49 E-value=0.68 Score=39.16 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=27.2
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|.| +|++|..+++.|+..|. ++.+++.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 446788898 68999999999999997 46666643
No 247
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.47 E-value=0.12 Score=46.70 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=31.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++.++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~ 183 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARS 183 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899999999999999999999997 79888864
No 248
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.47 E-value=0.12 Score=49.19 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=31.4
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+...+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 45678999999999999999999999999999764
No 249
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.46 E-value=0.7 Score=41.32 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=56.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
+|+|+|+.+-|..+++.|...|..-+..+-.+. ..+ .+.. .+. ..++.+.++
T Consensus 2 ~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~-------~~~-~~~~------------------~g~--~~v~~g~l~ 53 (256)
T TIGR00715 2 TVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSE-------GKH-LYPI------------------HQA--LTVHTGALD 53 (256)
T ss_pred eEEEEechHHHHHHHHHHHhCCCeEEEEEccCC-------ccc-cccc------------------cCC--ceEEECCCC
Confidence 588999988899999999998865433322111 111 1110 001 123333444
Q ss_pred cch-hhhcC--CCcEEEEcCCCHH--HHHHHHHHHHHcCCcEE
Q psy9587 198 EIS-EEFVH--GFDVVIATSCNPN--QLIKIDDFCRSKSKISL 235 (236)
Q Consensus 198 ~~~-~~~l~--~~DlVI~~~d~~~--~r~~In~~c~~~~ip~I 235 (236)
... .+++. +.|+|||++.+.. ....+.+.|.+.+||++
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 333 24443 5899999999876 45678899999999986
No 250
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.40 E-value=0.42 Score=45.95 Aligned_cols=91 Identities=12% Similarity=-0.038 Sum_probs=55.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+.++|+|+|+|-.|-.+++.|...|.. +++.|.+... +. .+ ...|.+ . +.....
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~~--~~--------------~~----~~~l~~---~--~~~~~~ 60 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNAV--EA--------------RE----VGALAD---A--ALLVET 60 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCcc--cc--------------hH----HHHHhh---c--CEEEeC
Confidence 346799999999999999999999998 6777754321 11 00 112333 1 111111
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
....+.+.++|+||.+..=+... .+-+.|++.+||++
T Consensus 61 ---~~~~~~~~~~d~vV~SpgI~~~~-p~~~~a~~~~i~i~ 97 (468)
T PRK04690 61 ---EASAQRLAAFDVVVKSPGISPYR-PEALAAAARGTPFI 97 (468)
T ss_pred ---CCChHHccCCCEEEECCCCCCCC-HHHHHHHHcCCcEE
Confidence 22335567899999876422221 23455677888875
No 251
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.39 E-value=0.25 Score=47.93 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh--HHHHHHHHHHhh-CCCceEEEEe-
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN--RAKSSEARAQNL-NPNVEVTSNE- 193 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~--Kaea~~~~L~~i-np~v~I~~~~- 193 (236)
.|.|||+|..|+.+|.+|+..|. +++++|.+.=....+ ... .. .-|.. -+..+++.+..+ .|.+-+....
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l-~~~-~~---~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEF-VKK-AK---EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHh-hh---hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 58999999999999999999998 599998754332222 110 00 00100 112233333332 2443333322
Q ss_pred cCCCc----chhhhcCCCcEEEEcCCC-HHHHHHHHHHHHHcCCcEE
Q psy9587 194 TKVDE----ISEEFVHGFDVVIATSCN-PNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 194 ~~l~~----~~~~~l~~~DlVI~~~d~-~~~r~~In~~c~~~~ip~I 235 (236)
....+ .-...++.=|+|||+... +.......+.+.++|+.|+
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fl 123 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYL 123 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 11111 112345666899999754 5555666678888888765
No 252
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.37 E-value=0.59 Score=41.28 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=25.7
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 478888 58999999999999996 57777754
No 253
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.35 E-value=0.41 Score=45.08 Aligned_cols=33 Identities=15% Similarity=-0.129 Sum_probs=26.4
Q ss_pred cceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 116 IYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 116 ~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
..+|+|||+ |.+|+.+++.|-...-.+|+.+|.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 357899999 999999999999653335777774
No 254
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.33 E-value=0.058 Score=44.36 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=52.5
Q ss_pred eEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCc-CCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 118 VYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHED-IGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~d-IGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
+|+|+|+|.+|..+++.+.. .++.-+.+.|. .+++.+ .+++..+. -|+.+.++-. -+-...+......
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~---a~ll~~Ds~hg~~~~~v~~-----~~~~l~i~g~~i~ 71 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETL---AHLLKYDSVHGRFPGEVEV-----DEDGLIVNGKKIK 71 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHH---HHHhcccCCCCCCCCcEEE-----eCCEEEECCEEEE
Confidence 58899999999999999874 45554555553 333333 22444322 2554332110 0111111111111
Q ss_pred CC-cchhhh--c--CCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587 196 VD-EISEEF--V--HGFDVVIATSCNPNQLIKIDDFCR 228 (236)
Q Consensus 196 l~-~~~~~~--l--~~~DlVI~~~d~~~~r~~In~~c~ 228 (236)
+. +.++.. + .+.|+||+|+.-..++........
T Consensus 72 ~~~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~ 109 (149)
T smart00846 72 VLAERDPANLPWKELGVDIVVECTGKFTTREKASAHLK 109 (149)
T ss_pred EEecCChHHCcccccCCeEEEeccccccchHHHHHHHH
Confidence 11 111111 1 368999999988777766655544
No 255
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.31 E-value=0.49 Score=47.05 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=65.4
Q ss_pred ccccceEEEEcCChhHHHHHHHHHH-----hCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHH
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIIL-----SGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQ 181 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~-----~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~ 181 (236)
.++..+|+++|+|+.|.-+|+.|+. .|+ ++|.++|.+-+=..+- . +++...|...+..
T Consensus 318 ~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r---~-----~~l~~~k~~fa~~--- 386 (581)
T PLN03129 318 DLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR---K-----DSLQPFKKPFAHD--- 386 (581)
T ss_pred chhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC---C-----ccChHHHHHHHhh---
Confidence 3556789999999999999999988 477 6899999775432211 1 1133334443332
Q ss_pred hhCCCceEEEEecCCCcchhhhcCC--CcEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587 182 NLNPNVEVTSNETKVDEISEEFVHG--FDVVIATSC--NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 182 ~inp~v~I~~~~~~l~~~~~~~l~~--~DlVI~~~d--~~~~r~~In~~c~~~~ip~I~ 236 (236)
.+. . ..-.+.++. .|++|.+.. +.=+...|..+|.....|+||
T Consensus 387 --~~~---------~-~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 387 --HEP---------G-ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred --ccc---------C-CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 110 0 112345555 788887763 455677888888888888886
No 256
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.31 E-value=0.46 Score=46.34 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=29.4
Q ss_pred ccceEEEEcCChhHHHHHHHHHH--hCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIIL--SGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~--~GVg~I~LvD~D~ 150 (236)
+.++|+|||+|..|.+.|..|+. .|. +++|+|...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence 34679999999999999999997 454 599999665
No 257
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=93.30 E-value=0.24 Score=47.93 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=61.5
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh-CCCceEEEEec-CC
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL-NPNVEVTSNET-KV 196 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i-np~v~I~~~~~-~l 196 (236)
|.|||+|..|..+|.+|+..|. +++++|.+.-....+ ...+.-. . +..-+...++....+ .|.+-+...+. ..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l-~~~~~~g-~--~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEF-LAEHAKG-K--KIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHH-HhhccCC-C--CceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 6899999999999999999998 588888765433333 1110000 0 000011122222222 24443443332 11
Q ss_pred Ccc----hhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEE
Q psy9587 197 DEI----SEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 197 ~~~----~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I 235 (236)
.+. -...+..=|+|||+.. .+.......+.+.+.++.||
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fv 120 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV 120 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEE
Confidence 111 1234455689999974 44554555666778887765
No 258
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.29 E-value=0.38 Score=44.65 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=51.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCCceEE-EeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGVKSVC-LLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GVg~I~-LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
+|+|+|+ |.+|.++++.|...-.-++. +++.+.- .|+. +.+.+|.+.... ...
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s----------------agk~--------~~~~~~~l~~~~-~~~ 56 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES----------------AGKP--------VSEVHPHLRGLV-DLN 56 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh----------------cCCC--------hHHhCccccccC-Cce
Confidence 5899998 89999999999965233344 5453321 1111 111222211100 111
Q ss_pred CCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 196 VDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 196 l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+.+.+ .++.+++|+||.|+.+........++ .+.|+.+|
T Consensus 57 ~~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VI 96 (346)
T TIGR01850 57 LEPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVI 96 (346)
T ss_pred eecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEE
Confidence 11111 23446899999999887776666655 44676665
No 259
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.29 E-value=0.14 Score=45.34 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=30.1
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT 152 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve 152 (236)
|+|||+|-+|+.+|..|++.|. +++|+|.+.+-
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 7899999999999999999999 69999988553
No 260
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.27 E-value=0.6 Score=41.96 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD 147 (236)
+|+|.| .|-+|+++++.|...|.. ++.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQ-VRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCe-EEEEE
Confidence 578899 588999999999999864 66654
No 261
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.22 E-value=0.53 Score=39.89 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.3
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|+|+ |++|.++++.|+..|.. +++++.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 4568899995 78999999999999987 8887744
No 262
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.20 E-value=0.24 Score=47.24 Aligned_cols=88 Identities=18% Similarity=0.086 Sum_probs=54.0
Q ss_pred ccceEEEEcCChhHHH-HHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGPLTRVGAE-IAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG~GgvGse-vak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
+.++|+|+|+|+.|.. +|+.|...|.. +++.|.... . .. +.|.+. .+.+. .
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~~~--------------------~--~~-~~l~~~--gi~~~--~ 57 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLKES--------------------A--VT-QRLLEL--GAIIF--I 57 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCCCC--------------------h--HH-HHHHHC--CCEEe--C
Confidence 3457899999999999 79999999987 667663221 0 01 124433 33332 1
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
. ...+.+.++|+||.+..=+.... .-+.++++++|++
T Consensus 58 ~----~~~~~~~~~d~vv~spgi~~~~~-~~~~a~~~~i~i~ 94 (461)
T PRK00421 58 G----HDAENIKDADVVVYSSAIPDDNP-ELVAARELGIPVV 94 (461)
T ss_pred C----CCHHHCCCCCEEEECCCCCCCCH-HHHHHHHCCCcEE
Confidence 1 12345568999998764322222 2355677888875
No 263
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.20 E-value=0.3 Score=43.83 Aligned_cols=35 Identities=14% Similarity=-0.082 Sum_probs=29.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
...+|+|.|+|++|..++..+...|..++..+|.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35689999999999999999999999877777643
No 264
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.16 E-value=0.76 Score=45.97 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=30.6
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+.++|+|||.|..|-..|..|++.|.. ++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCC
Confidence 467899999999999999999999985 88988543
No 265
>PRK13529 malate dehydrogenase; Provisional
Probab=93.14 E-value=0.48 Score=46.91 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=66.1
Q ss_pred ccccceEEEEcCChhHHHHHHHHHH----hCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIIL----SGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN 182 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~----~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~ 182 (236)
.++..+|+++|+|+.|.-+|+.|+. .|+ .+|.++|.+-+=.++- .|+...|..-+..
T Consensus 292 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r---------~~l~~~k~~fa~~---- 358 (563)
T PRK13529 292 PLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDM---------PDLLDFQKPYARK---- 358 (563)
T ss_pred ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC---------CcchHHHHHHhhh----
Confidence 3456789999999999999999987 599 5899999775432211 1233334433322
Q ss_pred hCCCceEEEEecCCCcchhhhcCCC--cEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587 183 LNPNVEVTSNETKVDEISEEFVHGF--DVVIATSC--NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 183 inp~v~I~~~~~~l~~~~~~~l~~~--DlVI~~~d--~~~~r~~In~~c~~~~ip~I~ 236 (236)
.++....... . ....-.+.++.. |++|.+.. +.=+...|..++.....|+||
T Consensus 359 ~~~~~~~~~~-~-~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 414 (563)
T PRK13529 359 REELADWDTE-G-DVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIF 414 (563)
T ss_pred cccccccccc-c-CCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 1211001000 0 001114455655 88887764 455677888888888888886
No 266
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.11 E-value=0.41 Score=44.57 Aligned_cols=91 Identities=12% Similarity=-0.051 Sum_probs=52.3
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC-------ceEEEeeCCcc-cccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV-------KSVCLLDSGVV-TKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV 189 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV-------g~I~LvD~D~V-e~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I 189 (236)
+|.|+|+|.-|+.+|..|+..|. .+++++..+.. +.++ +.+.+.+-..+.+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~--------------------~~~~in~~~~n~~y 60 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRN--------------------LTEIINTTHENVKY 60 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHH--------------------HHHHHHhcCCCccc
Confidence 37899999999999999998883 46777754210 0001 12222211111110
Q ss_pred E---EEecCC--CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587 190 T---SNETKV--DEISEEFVHGFDVVIATSCNPNQLIKIDDFCR 228 (236)
Q Consensus 190 ~---~~~~~l--~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~ 228 (236)
- ..+..+ +....+.++++|+||.++.+...+..+.++..
T Consensus 61 lpgi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~ 104 (342)
T TIGR03376 61 LPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKG 104 (342)
T ss_pred cCCCcCCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHh
Confidence 0 001111 11224567889999999988887777777653
No 267
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.09 E-value=0.15 Score=47.08 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=31.4
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+..++|+|||+|.+|..+|+.|...|+ ++..+|..
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 182 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRT 182 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 4678999999999999999999999998 47777753
No 268
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.07 E-value=0.42 Score=44.34 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=25.7
Q ss_pred hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEEC
Q psy9587 201 EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 201 ~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I~ 236 (236)
.+.+.++|+||+|+.+...... .+.|.+.|+++|+
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e~-a~~~~~aGk~VI~ 107 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAKN-KELYEKAGVKAIF 107 (341)
T ss_pred hHhhccCCEEEECCCchhhHHH-HHHHHHCCCEEEE
Confidence 3455789999999977655544 4577778898874
No 269
>KOG0024|consensus
Probab=93.06 E-value=0.38 Score=44.75 Aligned_cols=36 Identities=14% Similarity=-0.089 Sum_probs=31.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
...+|+|.|+|.+|-.....+-.+|..+|.++|-+.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA 204 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence 457899999999999999999999999999988543
No 270
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.06 E-value=0.88 Score=39.05 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=27.6
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence 35578899996 79999999999999985 666553
No 271
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.06 E-value=0.65 Score=44.30 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=18.5
Q ss_pred ceEEEEcCChhHHHHHHHHHH
Q psy9587 117 YVYSTGPLTRVGAEIAKNIIL 137 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~ 137 (236)
.+|.|+|+|.+|..+++.|..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~ 24 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEE 24 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHH
Confidence 578999999999999988854
No 272
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=93.05 E-value=0.59 Score=42.98 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=49.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
...+++|||+|..|...++.|.. ..+.++.++| ....|++.+++++++.. +++....
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~--------------------r~~~~~~~~~~~~~~~g--~~v~~~~ 184 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC--------------------RTPSTREKFALRASDYE--VPVRAAT 184 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC--------------------CCHHHHHHHHHHHHhhC--CcEEEeC
Confidence 34688999999999998877754 2344555544 23446777777776542 2333321
Q ss_pred cCCCcchhhhcCCCcEEEEcCCC
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
...+.++++|+|+.|+.+
T Consensus 185 -----~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 185 -----DPREAVEGCDILVTTTPS 202 (325)
T ss_pred -----CHHHHhccCCEEEEecCC
Confidence 234667899999999854
No 273
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=93.04 E-value=0.2 Score=46.49 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=32.3
Q ss_pred cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccc
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTK 153 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~ 153 (236)
..-|+|||+|-+|+.+|..|++. |..+++|+|.+.+-.
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~ 68 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGG 68 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccC
Confidence 35689999999999999999985 877899999876543
No 274
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.98 E-value=0.28 Score=47.41 Aligned_cols=88 Identities=7% Similarity=-0.042 Sum_probs=54.5
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
...+|+|+|+|..|-.+++.|...|. ++++.|... . + .. .+++. .+.+ ...
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------~-------------~---~~-~l~~~--g~~~--~~~ 61 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------D-------------A---LR-PHAER--GVAT--VST 61 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------H-------------H---HH-HHHhC--CCEE--EcC
Confidence 34679999999999999999999996 577777321 0 0 11 13332 2222 221
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
. ...+.++++|+||.+..-+... -+-..+++.+||++
T Consensus 62 ~---~~~~~l~~~D~VV~SpGi~~~~-p~~~~a~~~gi~v~ 98 (488)
T PRK03369 62 S---DAVQQIADYALVVTSPGFRPTA-PVLAAAAAAGVPIW 98 (488)
T ss_pred c---chHhHhhcCCEEEECCCCCCCC-HHHHHHHHCCCcEe
Confidence 1 1234567899999887533222 34556678888875
No 275
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.98 E-value=0.5 Score=42.22 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 37899999999999999999996 588888664
No 276
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.92 E-value=0.85 Score=40.68 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=27.2
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 34567889995 8999999999999997 4666663
No 277
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.92 E-value=0.48 Score=36.49 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.0
Q ss_pred cCChhHHHHHHHHHHh----CCceEEEeeCC
Q psy9587 123 PLTRVGAEIAKNIILS----GVKSVCLLDSG 149 (236)
Q Consensus 123 G~GgvGsevak~La~~----GVg~I~LvD~D 149 (236)
|+|.+|..+++.|... ++.-..|.|.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~ 31 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS 31 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC
Confidence 8999999999999976 45656666755
No 278
>PRK06194 hypothetical protein; Provisional
Probab=92.85 E-value=0.98 Score=39.44 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=27.1
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+..+|+|.| .|++|.++++.|+..|.. ++++|.
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r 38 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMK-LVLADV 38 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeC
Confidence 346788888 579999999999999974 777774
No 279
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.81 E-value=0.16 Score=48.06 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=30.7
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.++.++|+|||+|.||+.+|+.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 46788999999999999999999999996 556675
No 280
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.78 E-value=0.18 Score=45.07 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=29.1
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..+|+|||+|..|+.+|..|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4579999999999999999999997 48888865
No 281
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.76 E-value=0.17 Score=47.09 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=32.3
Q ss_pred ccccceEEEEcC-ChhHHHHHHHHHH-hCCceEEEeeCCc
Q psy9587 113 SYKIYVYSTGPL-TRVGAEIAKNIIL-SGVKSVCLLDSGV 150 (236)
Q Consensus 113 ~lk~~~VlIVG~-GgvGsevak~La~-~GVg~I~LvD~D~ 150 (236)
.++.++|+|+|+ |.+|+++++.|+. .|+.++++++.+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~ 191 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ 191 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence 356789999998 8999999999985 5899999988653
No 282
>PRK08655 prephenate dehydrogenase; Provisional
Probab=92.74 E-value=0.25 Score=47.28 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=26.4
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|+||| +|.+|+.+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 578997 89999999999999996 57887754
No 283
>PTZ00188 adrenodoxin reductase; Provisional
Probab=92.72 E-value=0.76 Score=45.06 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=55.6
Q ss_pred ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhh--CCCceEEE
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNL--NPNVEVTS 191 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~i--np~v~I~~ 191 (236)
+.++|+|||+|..|.++|..|+ ..|+. ++|+|....----+ |. -..++. ++.+.+.+.+.+. ++.+++..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgGLv--R~-GVaPdh---~~~k~v~~~f~~~~~~~~v~f~g 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYGLI--RY-GVAPDH---IHVKNTYKTFDPVFLSPNYRFFG 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCccEE--EE-eCCCCC---ccHHHHHHHHHHHHhhCCeEEEe
Confidence 4468999999999999999765 56664 99988665443333 32 222222 3333444444332 34444432
Q ss_pred EecCCCc-ch-hhhcCCCcEEEEcCCCH
Q psy9587 192 NETKVDE-IS-EEFVHGFDVVIATSCNP 217 (236)
Q Consensus 192 ~~~~l~~-~~-~~~l~~~DlVI~~~d~~ 217 (236)
+..+.. .+ .++...||.||.+++..
T Consensus 111 -nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 -NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred -eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 222221 12 44567899999998753
No 284
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.72 E-value=0.58 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=28.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGVK-SVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GVg-~I~LvD~D 149 (236)
+|.|+|+ |.+|+.++..|+..|+. +++++|.+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 5889998 99999999999999985 79999974
No 285
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.71 E-value=0.95 Score=38.68 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=28.4
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~ 40 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAA-VAIADLN 40 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCC
Confidence 34578899996 89999999999999985 6676643
No 286
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.68 E-value=0.73 Score=41.65 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=59.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC-
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV- 196 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l- 196 (236)
+|.+||+|-.|..++.+|+..|. +++++|.+. ....+ . +.|...+....+.+ ...++-+...+..-
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~-~~~~~------~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~ 68 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP-VADEL------L---SLGAVSVETARQVT--EASDIIFIMVPDTPQ 68 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH-hHHHH------H---HcCCeecCCHHHHH--hcCCEEEEeCCChHH
Confidence 48899999999999999999996 577887653 11111 1 12222222222211 12233333333220
Q ss_pred -C-----cch-hhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587 197 -D-----EIS-EEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 197 -~-----~~~-~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I 235 (236)
. +.. ...+..-.+||+|+ .++.....+.+.+..+|+.|+
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~v 115 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYL 115 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 0 000 11122235777775 567788889999999888764
No 287
>PLN02240 UDP-glucose 4-epimerase
Probab=92.68 E-value=2 Score=38.70 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=26.5
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD 147 (236)
+.++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 4567899984 8999999999999986 577776
No 288
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.68 E-value=0.15 Score=43.21 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQ 160 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq 160 (236)
+|.|+|+|=+|..+|-.|+..|.. +.-+|.|.-....| ++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l-~~g 42 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEAL-NNG 42 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHH-HTT
T ss_pred EEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHH-hhc
Confidence 588999999999999999999965 77778887666666 443
No 289
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.66 E-value=0.7 Score=43.92 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=31.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDV 156 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL 156 (236)
.+|+|||+|-+|..+|..|+..|. +++.+|.|.-..+.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 568999999999999999999995 488888765444445
No 290
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.65 E-value=0.19 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=28.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+|+|||+|.+|+.++..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 468999999999999999999998 68888854
No 291
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.62 E-value=0.77 Score=39.44 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=49.2
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh-HHHHHHHHHHhhCCCceEEE
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN-RAKSSEARAQNLNPNVEVTS 191 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~v~I~~ 191 (236)
++.++|+|.|+ |++|.++++.|+..|.. +.+++.+.-+ .+ ...+.+-..|+... -++.+.+.+.+....+.+-.
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~~~--~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 82 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSRPD--DL-PEGVEFVAADLTTAEGCAAVARAVLERLGGVDILV 82 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCChhh--hc-CCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45678899994 79999999999999985 7777765422 23 22233345567654 34555556666555555554
Q ss_pred Ee
Q psy9587 192 NE 193 (236)
Q Consensus 192 ~~ 193 (236)
+.
T Consensus 83 ~~ 84 (260)
T PRK06523 83 HV 84 (260)
T ss_pred EC
Confidence 43
No 292
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.62 E-value=0.88 Score=43.72 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=29.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|+|||+|..|...|..|++.|.. ++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 457899999999999999999999986 8888754
No 293
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.61 E-value=0.88 Score=41.38 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=41.9
Q ss_pred cceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
.+.++|.|+ ||+|.++|+.|+..|.. +.+++.+. .+.+.+++.+.+.++..++..+..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R~~--------------------~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLN-LVLVARNP--------------------DKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEECCH--------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence 467889995 69999999999999984 77776321 234556666766666555555544
Q ss_pred CCC
Q psy9587 195 KVD 197 (236)
Q Consensus 195 ~l~ 197 (236)
++.
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 443
No 294
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=92.57 E-value=1.3 Score=38.74 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=24.2
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCC-ceEEEeeC
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGV-KSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GV-g~I~LvD~ 148 (236)
+|+|.| +|.+|.++++.|+..|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 367888 58999999999999874 35766663
No 295
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.57 E-value=0.17 Score=47.08 Aligned_cols=34 Identities=21% Similarity=0.034 Sum_probs=29.7
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
.++.++|+|||+|.+|..+|++|..+|+. +.+.|
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~ 46 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGV 46 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEE
Confidence 46778999999999999999999999995 55555
No 296
>PLN02928 oxidoreductase family protein
Probab=92.56 E-value=0.18 Score=46.81 Aligned_cols=35 Identities=17% Similarity=0.034 Sum_probs=31.1
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..++|+|||+|.+|..+|+.|...|+ ++..+|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 4778899999999999999999999998 5777775
No 297
>PRK12862 malic enzyme; Reviewed
Probab=92.55 E-value=0.46 Score=48.82 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=60.3
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS 191 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~ 191 (236)
++..+|++.|+|+.|..+++.|...|+. +|.++|..-+=..+- . +++...|...+.+ .++
T Consensus 191 ~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r---~-----~~l~~~~~~~a~~----~~~------ 252 (763)
T PRK12862 191 IEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGR---T-----ELMDPWKARYAQK----TDA------ 252 (763)
T ss_pred hhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCC---C-----ccccHHHHHHhhh----ccc------
Confidence 4567899999999999999999999995 899999664322211 0 1133344443332 121
Q ss_pred EecCCCcchhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEEC
Q psy9587 192 NETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I~ 236 (236)
. .-.+.+++.|++|.+.. +.-+...+..+| .-|+||
T Consensus 253 --~----~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~---~~piif 289 (763)
T PRK12862 253 --R----TLAEVIEGADVFLGLSAAGVLKPEMVKKMA---PRPLIF 289 (763)
T ss_pred --C----CHHHHHcCCCEEEEcCCCCCCCHHHHHHhc---cCCEEE
Confidence 1 12455677888887654 334556666666 456664
No 298
>PLN02214 cinnamoyl-CoA reductase
Probab=92.54 E-value=2.2 Score=38.85 Aligned_cols=99 Identities=10% Similarity=0.004 Sum_probs=56.3
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
+..+|+|.|+ |.+|+.+++.|+..|.. ++.++.+. ++. +.. ....+.... -+++...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~---~~~---------------~~~-~~~~~~~~~--~~~~~~~ 66 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYT-VKGTVRNP---DDP---------------KNT-HLRELEGGK--ERLILCK 66 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCc---hhh---------------hHH-HHHHhhCCC--CcEEEEe
Confidence 4567899996 89999999999999864 55444221 111 000 011111111 1344555
Q ss_pred cCCCcch--hhhcCCCcEEEEcCCC------------HHHHHHHHHHHHHcCCc-EE
Q psy9587 194 TKVDEIS--EEFVHGFDVVIATSCN------------PNQLIKIDDFCRSKSKI-SL 235 (236)
Q Consensus 194 ~~l~~~~--~~~l~~~DlVI~~~d~------------~~~r~~In~~c~~~~ip-~I 235 (236)
.++.+.. .+.++++|+||.+... ...-..+-+.|++.++. +|
T Consensus 67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V 123 (342)
T PLN02214 67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVV 123 (342)
T ss_pred cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 5555432 4456788999877531 22344566678777763 44
No 299
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.52 E-value=0.18 Score=46.05 Aligned_cols=33 Identities=15% Similarity=-0.019 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
-|+|||.|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 37899999999999999999997 5999998654
No 300
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.52 E-value=0.71 Score=43.47 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.8
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
|+|+|+|+.|-.+|+.|...|.. ++..|.
T Consensus 2 ~~~iG~G~~G~a~a~~l~~~G~~-V~~sD~ 30 (433)
T TIGR01087 2 ILILGLGKTGRAVARFLHKKGAE-VTVTDL 30 (433)
T ss_pred EEEEEeCHhHHHHHHHHHHCCCE-EEEEeC
Confidence 68999999999999999999984 777774
No 301
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.51 E-value=0.86 Score=39.07 Aligned_cols=33 Identities=21% Similarity=0.092 Sum_probs=26.9
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+.++++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r 38 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAK-VVVGAR 38 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 4567888985 69999999999999984 766663
No 302
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.51 E-value=1.1 Score=42.74 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=30.1
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|+|||.|..|.+.|..|++.|.. ++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 456899999999999999999999974 9999864
No 303
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.50 E-value=0.63 Score=41.97 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=58.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC-
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV- 196 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l- 196 (236)
+|.|||+|..|+.++.+|+..|. .++++|.+.-....+ ... |...+....+.+. ..++-+...+...
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~-~~~--------g~~~~~s~~~~~~--~aDvVi~~vp~~~~ 70 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDAL-VDK--------GATPAASPAQAAA--GAEFVITMLPNGDL 70 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHH-HHc--------CCcccCCHHHHHh--cCCEEEEecCCHHH
Confidence 58999999999999999999996 588888764333333 111 1111111111111 1123333333221
Q ss_pred -Cc----c-h-hhhcCCCcEEEEc-CCCHHHHHHHHHHHHHcCCcEE
Q psy9587 197 -DE----I-S-EEFVHGFDVVIAT-SCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 197 -~~----~-~-~~~l~~~DlVI~~-~d~~~~r~~In~~c~~~~ip~I 235 (236)
.. . . ...++.-.+||++ +.++.....+.+.+.+.++.|+
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 00 0 0 1112333466666 4567777788888888887654
No 304
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.48 E-value=0.18 Score=45.91 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
..|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 458999999999999999999996 5999998754
No 305
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=92.47 E-value=1.2 Score=42.63 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=27.9
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+..+|+|.| .|-||+++++.|...|.. ++.+|..
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~-V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDE-VIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 3456799999 688999999999999864 7777743
No 306
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.44 E-value=0.24 Score=43.92 Aligned_cols=105 Identities=10% Similarity=0.162 Sum_probs=54.7
Q ss_pred eEEEEcCChhHHHHHHHHHHh--CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe-c
Q psy9587 118 VYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE-T 194 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~-~ 194 (236)
+|.|||||++|..+++.+-.- ++.-+.+.|.+.=...++ -+. ++..+...+-+.+ --+++-|++-. +
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~~~-------~~~~~~s~ide~~--~~~DlvVEaAS~~ 71 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-EAS-------VGRRCVSDIDELI--AEVDLVVEAASPE 71 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-Hhh-------cCCCccccHHHHh--hccceeeeeCCHH
Confidence 588999999999999876533 355566667665444444 222 2222221111111 12223333211 1
Q ss_pred CCCcchhhhc-CCCcEEEEcCCC---HHHHHHHHHHHHHcCC
Q psy9587 195 KVDEISEEFV-HGFDVVIATSCN---PNQLIKIDDFCRSKSK 232 (236)
Q Consensus 195 ~l~~~~~~~l-~~~DlVI~~~d~---~~~r~~In~~c~~~~i 232 (236)
-+.+..+..+ .++|++|.++.- ...+..+.+.|+..+-
T Consensus 72 Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~ 113 (255)
T COG1712 72 AVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGA 113 (255)
T ss_pred HHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence 1222233444 458999887754 4455566666665543
No 307
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.39 E-value=0.73 Score=42.15 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=48.2
Q ss_pred cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..+++|+|+|..|-.-++.|+. .++.+|.++|.+ ..+++.+++++++ . .+.+.....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~--------------------~~~~~~~~~~~~~-~-~~~v~~~~~ 185 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRS--------------------PERAEAFAARLRD-L-GVPVVAVDS 185 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SS--------------------HHHHHHHHHHHHC-C-CTCEEEESS
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccC--------------------hhHHHHHHHhhcc-c-cccceeccc
Confidence 3588999999999999988764 668888887722 2468888999998 4 666665432
Q ss_pred CCCcchhhhcCCCcEEEEcCCC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
..+.++++|+|+.|+.+
T Consensus 186 -----~~~av~~aDii~taT~s 202 (313)
T PF02423_consen 186 -----AEEAVRGADIIVTATPS 202 (313)
T ss_dssp -----HHHHHTTSSEEEE----
T ss_pred -----hhhhcccCCEEEEccCC
Confidence 34678899999999864
No 308
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.38 E-value=0.22 Score=46.04 Aligned_cols=36 Identities=22% Similarity=0.101 Sum_probs=30.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++..+|+|||+|.+|..+|+.|...|.. +..+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~-V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGAT-ITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCC
Confidence 46778899999999999999999999974 7777743
No 309
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=92.33 E-value=0.32 Score=47.48 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=65.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh---HHHHHHHHHHhh-CCCceEEEE
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN---RAKSSEARAQNL-NPNVEVTSN 192 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~---Kaea~~~~L~~i-np~v~I~~~ 192 (236)
..|.+||+|..|+.+|.||+..|.. ++++|.+.=....+ ... ...-|.. -+...++....+ .|.+-+...
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l-~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDET-VER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHH-HHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 4689999999999999999999985 88888653222222 100 0000110 112222333222 244444433
Q ss_pred ecCC--Cc---chhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEE
Q psy9587 193 ETKV--DE---ISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 193 ~~~l--~~---~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I 235 (236)
...- .+ .-...+..=|+|||+.. ++.....+.+.+.+.|+.||
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 2211 11 01233455689999975 47777788889999998775
No 310
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.28 E-value=0.8 Score=43.45 Aligned_cols=85 Identities=6% Similarity=-0.066 Sum_probs=55.8
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
..+|+|+|.|.+|.++++.|...|. .++++|.|.++. .. .. . +....++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~-~~-~~--------------------------g--~~vI~GD 288 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH-RL-PD--------------------------D--ADLIPGD 288 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh-hc-cC--------------------------C--CcEEEeC
Confidence 4578999999999999999998887 478888763211 11 00 1 1122333
Q ss_pred CCcch---hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcC
Q psy9587 196 VDEIS---EEFVHGFDVVIATSCNPNQLIKIDDFCRSKS 231 (236)
Q Consensus 196 l~~~~---~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ 231 (236)
.++.. ..-+++++.||.++++......+-..+++.+
T Consensus 289 ~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 289 SSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred CCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 33221 2345678888888888777777777777765
No 311
>PRK15076 alpha-galactosidase; Provisional
Probab=92.28 E-value=0.68 Score=44.39 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=50.3
Q ss_pred eEEEEcCChhHHHHHH--HHH-HhCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHH-HHHHHHhhCCCceEEE
Q psy9587 118 VYSTGPLTRVGAEIAK--NII-LSGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKS-SEARAQNLNPNVEVTS 191 (236)
Q Consensus 118 ~VlIVG~GgvGsevak--~La-~~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea-~~~~L~~inp~v~I~~ 191 (236)
+|.|||+|++|...+. .++ ..+. .+++|+|-|. +-+ . ++.+ +...+....+.++|+.
T Consensus 3 KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~---er~-~-------------~~~~l~~~~~~~~~~~~~i~~ 65 (431)
T PRK15076 3 KITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP---ERL-E-------------ESEIVARKLAESLGASAKITA 65 (431)
T ss_pred EEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH---HHH-H-------------HHHHHHHHHHHhcCCCeEEEE
Confidence 6899999999866655 554 2233 3899999543 111 0 0222 2333334444455553
Q ss_pred EecCCCcchhhhcCCCcEEEEcCCC--HHHHHHHH-HHHHHcCC
Q psy9587 192 NETKVDEISEEFVHGFDVVIATSCN--PNQLIKID-DFCRSKSK 232 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~d~--~~~r~~In-~~c~~~~i 232 (236)
... -.+.++++|+||.+... ...+...+ ++..++|+
T Consensus 66 ttD-----~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~ 104 (431)
T PRK15076 66 TTD-----RREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGL 104 (431)
T ss_pred ECC-----HHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCC
Confidence 222 13557899999988754 33333233 34444443
No 312
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=92.28 E-value=0.2 Score=44.36 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=26.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGID-VTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence 589999999999999999999988 88888654
No 313
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.27 E-value=1.2 Score=38.00 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=27.6
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++|+|.| .|++|..+++.|+..|.. +++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 4557888898 589999999999999984 666654
No 314
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.25 E-value=0.55 Score=41.90 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+|.|||+|.+|..++.+|+..|.. +.++|.+.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~-v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYS-LVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCH
Confidence 689999999999999999999964 77888654
No 315
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.25 E-value=0.34 Score=45.48 Aligned_cols=92 Identities=13% Similarity=0.019 Sum_probs=55.0
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh--h---
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN--L--- 183 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~--i--- 183 (236)
+..+|.|+|+|+=|+.+|..|+..|. .+++++..|.. + + ++. ..+.+.+ .
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~----~-~----------~~~----~~~~in~~~~N~~ 70 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI----V-E----------GEK----LSDIINTKHENVK 70 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc----c-c----------chH----HHHHHHhcCCCcc
Confidence 34679999999999999999999874 46777654431 0 0 000 1111211 1
Q ss_pred -CCCceEEEEecCC--CcchhhhcCCCcEEEEcCCCHHHHHHHHHHHH
Q psy9587 184 -NPNVEVTSNETKV--DEISEEFVHGFDVVIATSCNPNQLIKIDDFCR 228 (236)
Q Consensus 184 -np~v~I~~~~~~l--~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~ 228 (236)
-|.+++ +..+ +....+.++++|+||.++.+...+..+.++..
T Consensus 71 ylp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~ 115 (365)
T PTZ00345 71 YLPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKE 115 (365)
T ss_pred cCCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhcc
Confidence 112211 1111 11223567889999999988888877777653
No 316
>PRK06125 short chain dehydrogenase; Provisional
Probab=92.24 E-value=1.7 Score=37.44 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=28.5
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4578899997 6999999999999998 68887743
No 317
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.22 E-value=1.3 Score=38.69 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=28.2
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++++|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC
Confidence 35578899996 68999999999999974 7777643
No 318
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.19 E-value=1.2 Score=47.08 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=33.5
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccccc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKE 154 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~s 154 (236)
+.++|+|||+|..|-++|..|++.|.. ++++|...++.-
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccccc
Confidence 567899999999999999999999977 999998655433
No 319
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.14 E-value=0.22 Score=46.27 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=29.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+.|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 368999999999999999999996 599999875
No 320
>PRK09414 glutamate dehydrogenase; Provisional
Probab=92.14 E-value=1.3 Score=42.79 Aligned_cols=35 Identities=17% Similarity=0.012 Sum_probs=31.4
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
.++.++|+|.|.|.||..+|+.|...|..-+.+.|
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 46778999999999999999999999988777767
No 321
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.13 E-value=0.21 Score=47.16 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.7
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.++.++|+|||+|.+|..+++.|...|+. +..+|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 46778999999999999999999999996 666775
No 322
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=92.12 E-value=0.23 Score=46.31 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=31.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
.+..++|+|||+|-+|..++++|...|+++|++..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence 46778999999999999999999999999999964
No 323
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.10 E-value=1.1 Score=43.36 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=32.6
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++.++|+|=|.|-||+.+|+.|...|..-+.+.|.+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~ 261 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD 261 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4678899999999999999999999999988876633
No 324
>PRK00811 spermidine synthase; Provisional
Probab=92.09 E-value=0.64 Score=41.88 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=25.6
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+..+|+++|+|+ |+.....|...++.+++.+|-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 456899999975 55555555555899999999665
No 325
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.08 E-value=1.5 Score=41.05 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=25.9
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+..+|+|+|+ |.+|..+++.|...|.. +++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence 3457888984 89999999999999864 666553
No 326
>PRK09186 flagellin modification protein A; Provisional
Probab=92.08 E-value=0.96 Score=38.60 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=26.2
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD 147 (236)
+.++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 4578899995 69999999999999975 55554
No 327
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.03 E-value=1.7 Score=36.76 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=25.9
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD 147 (236)
+.++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 4567888985 89999999999999975 55555
No 328
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.03 E-value=0.86 Score=41.83 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=28.6
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
..+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 468999999999999999888999987877764
No 329
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=92.03 E-value=1.1 Score=43.00 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=61.5
Q ss_pred eEEEEcCChh-HHHHHHHHHH----hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHH-HhhCCCceEEE
Q psy9587 118 VYSTGPLTRV-GAEIAKNIIL----SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARA-QNLNPNVEVTS 191 (236)
Q Consensus 118 ~VlIVG~Ggv-Gsevak~La~----~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L-~~inp~v~I~~ 191 (236)
+|.|||+|++ +-.++..|+. .++++|+|+|-|. ..| .+ +..+++++ .+..+.++|+.
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl-~~-------------v~~l~~~~~~~~g~~~~v~~ 64 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQ-EK-------------VAEAVKILFKENYPEIKFVY 64 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHH-HH-------------HHHHHHHHHHhhCCCeEEEE
Confidence 5789999986 2355666653 4568999999554 223 11 23344444 45555666665
Q ss_pred EecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587 192 NETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK 232 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i 232 (236)
... -.+-++++|+||.+. +..+.+..=.+++.++|+
T Consensus 65 Ttd-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi 102 (437)
T cd05298 65 TTD-----PEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV 102 (437)
T ss_pred ECC-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc
Confidence 433 346789999999885 667888877788888886
No 330
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.01 E-value=1.8 Score=39.47 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=27.4
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|+|.| +|=+|+++++.|...|. +++.+|..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 446789999 58899999999999986 57777743
No 331
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.99 E-value=1 Score=42.56 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=53.3
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
.++|+|+|.|+.|-..++.|...|. +++..|.+.- . .. ...|.+ .+.+. ...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~----~--------------~~----~~~l~~---g~~~~--~~~ 57 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRIT----P--------------PG----LDKLPE---NVERH--TGS 57 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCC----c--------------hh----HHHHhc---CCEEE--eCC
Confidence 3578999999999999999999997 5888884320 1 00 112221 33332 221
Q ss_pred CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
. ....++++|+||....-... ...-..|++.|+|++
T Consensus 58 ~---~~~~~~~~d~vv~spgi~~~-~~~~~~a~~~g~~v~ 93 (438)
T PRK03806 58 L---NDEWLLAADLIVASPGIALA-HPSLSAAADAGIEIV 93 (438)
T ss_pred C---CHHHhcCCCEEEECCCCCCC-CHHHHHHHHCCCeEE
Confidence 1 22345678998877643322 233445678888864
No 332
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=91.98 E-value=1.4 Score=39.23 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=59.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV 196 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l 196 (236)
..|+|+|-.+=|-.++..|...|..-+.=+-.+ .|. ...-.+..+.+.+
T Consensus 3 ~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~------------------~g~-------------~~~~~~~v~~G~l 51 (248)
T PRK08057 3 PRILLLGGTSEARALARALAAAGVDIVLSLAGR------------------TGG-------------PADLPGPVRVGGF 51 (248)
T ss_pred ceEEEEechHHHHHHHHHHHhCCCeEEEEEccC------------------CCC-------------cccCCceEEECCC
Confidence 358889988999999999998887533221111 111 0011334555666
Q ss_pred -Ccch-hhhc--CCCcEEEEcCCCHHH--HHHHHHHHHHcCCcEE
Q psy9587 197 -DEIS-EEFV--HGFDVVIATSCNPNQ--LIKIDDFCRSKSKISL 235 (236)
Q Consensus 197 -~~~~-~~~l--~~~DlVI~~~d~~~~--r~~In~~c~~~~ip~I 235 (236)
+... .+++ .++++|||++.++.. ...+.+.|.+.+||++
T Consensus 52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 4333 4455 378999999999764 4688899999999986
No 333
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.98 E-value=0.23 Score=48.78 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=31.3
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|+|+||+|..++..|+..|+ ++.+++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 455789999999999999999999999 89998765
No 334
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.97 E-value=1.5 Score=37.22 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=26.9
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecC
Confidence 34567888885 79999999999999864 666653
No 335
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.96 E-value=1 Score=42.68 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=52.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
++|+|+|+|+.|-..+..|...|- -.+++.|... +. + ..++|.+ .+++ +.+.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~----~~--------------~----~~~~l~~---g~~~--~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE----TP--------------P----GQEQLPE---DVEL--HSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC----Cc--------------h----hHHHhhc---CCEE--EeCC
Confidence 568999999999999999999865 4677877332 11 0 1122322 3333 2221
Q ss_pred CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
. +.+.+.++|+||.+..=+... -.-..+++++||++
T Consensus 61 ~---~~~~~~~~d~vV~SpgI~~~~-p~~~~a~~~gi~i~ 96 (438)
T PRK04663 61 W---NLEWLLEADLVVTNPGIALAT-PEIQQVLAAGIPVV 96 (438)
T ss_pred C---ChHHhccCCEEEECCCCCCCC-HHHHHHHHCCCcEE
Confidence 1 234457899998776322221 23445577888875
No 336
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.93 E-value=0.29 Score=45.82 Aligned_cols=36 Identities=22% Similarity=0.025 Sum_probs=31.7
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+...+|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 3566779999999999999999999999 59999865
No 337
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.92 E-value=1.4 Score=37.87 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=25.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 35788886 8999999999999996 5777664
No 338
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.92 E-value=0.26 Score=44.16 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=28.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
++|+|||+|.+|+.+|..|+.+|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 569999999999999999999996 588888653
No 339
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.90 E-value=0.25 Score=47.41 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=32.5
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+..++|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3467899999999999999999999999 688888664
No 340
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.85 E-value=1.2 Score=38.63 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=28.1
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++..+|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34567888995 5899999999999998 67777753
No 341
>PRK06398 aldose dehydrogenase; Validated
Probab=91.84 E-value=1 Score=38.97 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=47.6
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEEE
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVTS 191 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~~ 191 (236)
++.++|+|.| .||+|.++++.|+..|. ++.+++.+.-...++ .+-..|+..+. ++.+.+.+.+.+..+.+-.
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~-----~~~~~D~~~~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYNDV-----DYFKVDVSNKEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccCce-----EEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3556889999 56999999999999997 467777553222122 23345776653 4555666666555566555
Q ss_pred Ee
Q psy9587 192 NE 193 (236)
Q Consensus 192 ~~ 193 (236)
+.
T Consensus 78 ~~ 79 (258)
T PRK06398 78 NN 79 (258)
T ss_pred EC
Confidence 54
No 342
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.79 E-value=0.24 Score=45.65 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=29.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHhCCce------EEEeeCC
Q psy9587 117 YVYSTGPL-TRVGAEIAKNIILSGVKS------VCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~-GgvGsevak~La~~GVg~------I~LvD~D 149 (236)
++|+|+|+ |.+|+.++..|+..|+-. |+|+|-+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 36899999 999999999999988865 9999864
No 343
>PRK06436 glycerate dehydrogenase; Provisional
Probab=91.79 E-value=0.31 Score=44.54 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=30.7
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.+..++|+|+|+|.+|.++|+.|...|+. +..+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence 57789999999999999999988888884 7777754
No 344
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.78 E-value=0.24 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.062 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+|+|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 58999999999999999999997 599999764
No 345
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=91.76 E-value=0.39 Score=41.02 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=54.4
Q ss_pred eEEEEcCChhHHH-HHHHHHH----hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHH-HHHhhCCCceEEE
Q psy9587 118 VYSTGPLTRVGAE-IAKNIIL----SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEA-RAQNLNPNVEVTS 191 (236)
Q Consensus 118 ~VlIVG~GgvGse-vak~La~----~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~-~L~~inp~v~I~~ 191 (236)
+|.|||+|++-.. .+..++. ....+|.|+|-|. +-| . .+..+++ ..++.++.++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~---~RL-~-------------~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE---ERL-E-------------IVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH---HHH-H-------------HHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH---HHH-H-------------HHHHHHHHHHHhcCCCeEEEE
Confidence 4789999987554 3333332 3346899998665 222 1 1233444 4456777777766
Q ss_pred EecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587 192 NETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK 232 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i 232 (236)
... -.+-++++|+||.+. +..+.+..=.+++.++|+
T Consensus 64 ttd-----~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi 101 (183)
T PF02056_consen 64 TTD-----RREALEGADFVINQIRVGGLEAREIDEEIPLKYGI 101 (183)
T ss_dssp ESS-----HHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTT
T ss_pred eCC-----HHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCC
Confidence 544 346688999999886 445555555556666665
No 346
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.68 E-value=1.3 Score=39.10 Aligned_cols=34 Identities=18% Similarity=0.015 Sum_probs=29.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
...+|+|+|+|++|..++..+...|+.++..+|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 4568899999999999999998999987877764
No 347
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=91.67 E-value=0.65 Score=44.15 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=50.5
Q ss_pred EEEEcCChhHHH-HHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCCC
Q psy9587 119 YSTGPLTRVGAE-IAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVD 197 (236)
Q Consensus 119 VlIVG~GgvGse-vak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l~ 197 (236)
|.++|.||.|.. +|+.|...|.. ++..|..... ..+.|++. .+. .+..
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~-v~~~D~~~~~-----------------------~~~~l~~~--gi~--~~~g--- 50 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQ-VSGSDIAENA-----------------------TTKRLEAL--GIP--IYIG--- 50 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCe-EEEECCCcch-----------------------HHHHHHHC--cCE--EeCC---
Confidence 678999999998 99999999987 6666632210 12234433 233 3222
Q ss_pred cchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 198 EISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 198 ~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
...+.+.++|+||.+..=..... .-..++++++|++
T Consensus 51 -~~~~~~~~~d~vV~spgi~~~~p-~~~~a~~~~i~v~ 86 (448)
T TIGR01082 51 -HSAENLDDADVVVVSAAIKDDNP-EIVEAKERGIPVI 86 (448)
T ss_pred -CCHHHCCCCCEEEECCCCCCCCH-HHHHHHHcCCceE
Confidence 23345677999987753222112 2334567788875
No 348
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.63 E-value=0.28 Score=47.63 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=34.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCCcccccCCCCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSGVVTKEDVNTAQ 160 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D~Ve~sNL~~rq 160 (236)
+|+|+|+|-+|..+|-.|+..|.| +++.+|.|.-....| +..
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l-~~g 45 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAW-NSD 45 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHH-HcC
Confidence 489999999999999999999865 477788877666666 444
No 349
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.63 E-value=0.28 Score=49.90 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=30.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
...+|.|||+|..|+.+|..++.+|+. ++|+|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 456899999999999999999999986 88989653
No 350
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.62 E-value=1.6 Score=40.78 Aligned_cols=32 Identities=9% Similarity=-0.083 Sum_probs=27.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
...+|+|+|+||+|...++....+| -+++.+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~ 197 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT 197 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 3578999999999999999999999 6677766
No 351
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.61 E-value=0.32 Score=44.15 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=32.5
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+..++|+|+|+|++|..++..|...|. +++++|.+.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~ 185 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS 185 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 3466899999999999999999999998 899988663
No 352
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.60 E-value=0.58 Score=43.29 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=27.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++.+++.|+|.|.||..+|+.+...|+. |...|..
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~-v~y~~~~ 178 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGFGMK-VLYYDRS 178 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC
Confidence 46788999999999999999999944444 5555533
No 353
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.60 E-value=0.25 Score=50.20 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=30.5
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
...+|.|||+|..|+.+|..++.+|.. ++|+|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~ 346 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQ 346 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCH
Confidence 346799999999999999999999985 89999553
No 354
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.58 E-value=0.27 Score=45.13 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=29.8
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..++|+|||+|.||.++|+.|...|+. +..+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECC
Confidence 46778999999999999999999999985 555563
No 355
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.57 E-value=0.29 Score=44.80 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=30.4
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..++|+|||+|.||.++|+.+...|+. +..+|.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~ 176 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYST 176 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECC
Confidence 46889999999999999999999988885 666675
No 356
>PRK08278 short chain dehydrogenase; Provisional
Probab=91.56 E-value=1.6 Score=38.27 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=27.7
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++++|.| .|++|..+++.|+..|. ++.+++..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 446788899 57999999999999998 47777754
No 357
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.53 E-value=2.1 Score=31.84 Aligned_cols=77 Identities=17% Similarity=0.033 Sum_probs=51.1
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
..+|+-+|||. |......+.+..-.+++-+|.+.- -.+.+.+++.+....-+|+.+..+
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~--------------------~~~~a~~~~~~~~~~~~i~~~~~d 60 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPE--------------------MLEIARERAAEEGLSDRITFVQGD 60 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHH--------------------HHHHHHHHHHHTTTTTTEEEEESC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHH--------------------HHHHHHHHHHhcCCCCCeEEEECc
Confidence 46789999965 655555555455566888885331 133455566555556678888888
Q ss_pred CCcchhhhcCCCcEEEEcC
Q psy9587 196 VDEISEEFVHGFDVVIATS 214 (236)
Q Consensus 196 l~~~~~~~l~~~DlVI~~~ 214 (236)
+ ....+....||+|++..
T Consensus 61 ~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 61 A-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp C-HGGTTTSSCEEEEEECS
T ss_pred c-ccCcccCCCCCEEEECC
Confidence 7 44455667899999877
No 358
>PLN02740 Alcohol dehydrogenase-like
Probab=91.51 E-value=1.1 Score=41.31 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=29.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
...+|+|+|+|++|..++..+...|+.++..+|.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 34689999999999999999999999878877643
No 359
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=91.48 E-value=0.8 Score=39.32 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=26.9
Q ss_pred cceEEEEcCChhHHHHHHHHH--HhCCceEEEeeCC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNII--LSGVKSVCLLDSG 149 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La--~~GVg~I~LvD~D 149 (236)
..+|+|+|+|.+|..+++.+. ..|+.-+.++|.|
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 357999999999999998743 4577767788865
No 360
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.44 E-value=0.31 Score=44.37 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=32.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK 153 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~ 153 (236)
...|+|||.|-+|..+|..|++.|. +++++|.+.+-.
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~ 40 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGG 40 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCC
Confidence 3578999999999999999999999 899999887744
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.44 E-value=1.5 Score=44.03 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=29.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|||+|..|...|..|++.|.. ++|+|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 446899999999999999999999975 8898854
No 362
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.42 E-value=1.2 Score=39.15 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=27.6
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~ 39 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVD 39 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 456788888 679999999999999985 7776643
No 363
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=91.42 E-value=0.25 Score=45.45 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=28.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEeeCCc
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD~D~ 150 (236)
+|.|||+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 4789999 9999999999999987 5799999644
No 364
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.39 E-value=0.32 Score=46.50 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=31.6
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+...+|+|+|+|.+|..+++.+...|+ +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 467899999999999999999999999 588888654
No 365
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.34 E-value=1.7 Score=41.62 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=29.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
...+|+|||+|..|..+|..|++.|.. ++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 346899999999999999999999985 8898854
No 366
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.33 E-value=0.24 Score=50.56 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=30.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
...+|.|||+|..|+.+|..++.+|+. ++|+|.+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCc-EEEecCCH
Confidence 456899999999999999999999986 88888653
No 367
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=91.33 E-value=0.84 Score=45.24 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=63.2
Q ss_pred ccccceEEEEcCChhHHHHHHHHH----HhCC------ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHh
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNII----LSGV------KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN 182 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La----~~GV------g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~ 182 (236)
+++..+|+++|+|+.|.-+|+.|+ ..|+ .+|.++|.+-+=..+- . +++...|..-+..
T Consensus 294 ~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r---~-----~~l~~~k~~fa~~---- 361 (559)
T PTZ00317 294 PPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTR---G-----DKLAKHKVPFART---- 361 (559)
T ss_pred ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC---C-----ccccHHHHHHhcc----
Confidence 356678999999999999999988 4799 7999999775432211 0 1133333332221
Q ss_pred hCCCceEEEEecCCCcchhhhcCCC--cEEEEcCC--CHHHHHHHHHHHHHcCCcEEC
Q psy9587 183 LNPNVEVTSNETKVDEISEEFVHGF--DVVIATSC--NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 183 inp~v~I~~~~~~l~~~~~~~l~~~--DlVI~~~d--~~~~r~~In~~c~~~~ip~I~ 236 (236)
-++. . .... ..-.+.++.. |++|.+.. +.=+...|..++.....|+||
T Consensus 362 ~~~~-~----~~~~-~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIF 413 (559)
T PTZ00317 362 DISA-E----DSSL-KTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIF 413 (559)
T ss_pred cccc-c----cccC-CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 1000 0 0000 1123455555 88887653 445667777788777778775
No 368
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.32 E-value=0.96 Score=43.70 Aligned_cols=37 Identities=24% Similarity=0.144 Sum_probs=33.3
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++.++|+|.|.|-||+..|+.|...|..-+.+.|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4678899999999999999999999999988888833
No 369
>PRK07856 short chain dehydrogenase; Provisional
Probab=91.31 E-value=1.2 Score=38.13 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=47.2
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCCh-HHHHHHHHHHhhCCCceEEE
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN-RAKSSEARAQNLNPNVEVTS 191 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~v~I~~ 191 (236)
++.++++|.| .|++|.++++.|+..|.. +.++|.+.-. ... .....+-..|+..+ ..+.+.+.+.+..+.+.+-.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~-v~~~~r~~~~-~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 80 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGAT-VVVCGRRAPE-TVD-GRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLV 80 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCChhh-hhc-CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3557788888 569999999999999984 7777765422 111 12222334567654 34445555555555555555
Q ss_pred Ee
Q psy9587 192 NE 193 (236)
Q Consensus 192 ~~ 193 (236)
+.
T Consensus 81 ~~ 82 (252)
T PRK07856 81 NN 82 (252)
T ss_pred EC
Confidence 53
No 370
>PLN02256 arogenate dehydrogenase
Probab=91.30 E-value=0.32 Score=44.45 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=29.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+..+|+|||+|.+|+.+++.|...|. ++..+|.+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence 45679999999999999999999885 577888664
No 371
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.26 E-value=2.6 Score=36.11 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=25.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 46788885 6999999999999997 57777743
No 372
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.25 E-value=0.48 Score=42.93 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=25.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+|+|+|+|.+|+.++..|...|... .+++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v-~i~g~ 34 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVV-RIIGR 34 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeE-EEEee
Confidence 57899999999999999999999984 34443
No 373
>PLN02253 xanthoxin dehydrogenase
Probab=91.25 E-value=1.7 Score=37.85 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=27.4
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++++|.| +|++|.++++.|+..|.. +.++|.
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~ 50 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDL 50 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence 4556788888 579999999999999975 677764
No 374
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.24 E-value=0.25 Score=50.15 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=30.0
Q ss_pred ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D~ 150 (236)
...+|.|||+|..|+.+|..++ .+|+. ++++|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCCH
Confidence 4578999999999999999999 88976 88888653
No 375
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.08 E-value=2.1 Score=36.38 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=26.5
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+.++|+|.| .|++|.++++.|+..|.. +.+++.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r 36 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAK-VVIADL 36 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 346788999 689999999999999874 666553
No 376
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=91.07 E-value=0.73 Score=47.25 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=59.0
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT 190 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~ 190 (236)
.++..+|++.|+|+.|..+++.|...|+. +|.++|..-+=.. .| .+++...|...+.. -++
T Consensus 182 ~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~---~r-----~~~~~~~k~~~a~~----~~~----- 244 (752)
T PRK07232 182 KIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYK---GR-----TEGMDEWKAAYAVD----TDA----- 244 (752)
T ss_pred ChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecC---CC-----cccccHHHHHHhcc----CCC-----
Confidence 35567899999999999999999999995 8999995543211 11 01233334433221 111
Q ss_pred EEecCCCcchhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEEC
Q psy9587 191 SNETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 191 ~~~~~l~~~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I~ 236 (236)
. .-.+.+++.|++|.+.. +.-+...|..+|. -|+||
T Consensus 245 ---~----~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~~---~piif 281 (752)
T PRK07232 245 ---R----TLAEAIEGADVFLGLSAAGVLTPEMVKSMAD---NPIIF 281 (752)
T ss_pred ---C----CHHHHHcCCCEEEEcCCCCCCCHHHHHHhcc---CCEEE
Confidence 0 12455667888876653 3345556666653 56664
No 377
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=91.05 E-value=1.7 Score=39.66 Aligned_cols=76 Identities=8% Similarity=0.060 Sum_probs=52.3
Q ss_pred cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..+++|+|+|.-|-.-+..++. -++.+|.++|. ...|++.+++++.+.. .++++....
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r--------------------~~~~a~~f~~~~~~~~-~~~v~~~~~ 175 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR--------------------NFDHARAFAERFSKEF-GVDIRPVDN 175 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC--------------------CHHHHHHHHHHHHHhc-CCcEEEeCC
Confidence 4688999999999988888774 35566666552 2346777888887643 334444321
Q ss_pred CCCcchhhhcCCCcEEEEcCCCH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNP 217 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~ 217 (236)
..+.+.++|+|+.|+.+.
T Consensus 176 -----~~eav~~aDIV~taT~s~ 193 (301)
T PRK06407 176 -----AEAALRDADTITSITNSD 193 (301)
T ss_pred -----HHHHHhcCCEEEEecCCC
Confidence 356678999999988653
No 378
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.02 E-value=1 Score=43.59 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=33.6
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++.++|+|=|.|-||..+|+.|...|..-+++.|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4678899999999999999999999999988888855
No 379
>PRK08264 short chain dehydrogenase; Validated
Probab=91.00 E-value=0.42 Score=40.44 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=30.3
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+..+|+|+| .|++|.++++.|+..|..++.+++.+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 456788898 589999999999999997788888653
No 380
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.97 E-value=0.56 Score=47.63 Aligned_cols=34 Identities=24% Similarity=0.125 Sum_probs=29.0
Q ss_pred ccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D 149 (236)
...+|.|||+|..|+.+|..++ .+|+. ++|+|.+
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~ 337 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIP-VRIKDIN 337 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCC
Confidence 3467999999999999999998 48976 8888866
No 381
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.95 E-value=1.4 Score=39.38 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=24.8
Q ss_pred cceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587 116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD 147 (236)
.++|+|.| +|++|+.+++.|+..|.. +.+++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEE
Confidence 35788888 589999999999999975 54444
No 382
>PRK12320 hypothetical protein; Provisional
Probab=90.94 E-value=1.4 Score=44.83 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+|+|.| +|-+|+.+++.|...|. +++.+|.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQ 32 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 478899 79999999999999996 4666774
No 383
>PRK07589 ornithine cyclodeaminase; Validated
Probab=90.91 E-value=1.6 Score=40.77 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=50.4
Q ss_pred cceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..+++|+|+|..+-.-++.+.. ..+.++.+++. ...|++.+++++++. .+++....
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r--------------------~~~~a~~~~~~~~~~--~~~v~~~~- 185 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI--------------------DPAATAKLARNLAGP--GLRIVACR- 185 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC--------------------CHHHHHHHHHHHHhc--CCcEEEeC-
Confidence 4678999999999888876663 35566666542 234677788888762 44444422
Q ss_pred CCCcchhhhcCCCcEEEEcCCC
Q psy9587 195 KVDEISEEFVHGFDVVIATSCN 216 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~ 216 (236)
...+.+.++|+|++|+.+
T Consensus 186 ----~~~~av~~ADIIvtaT~S 203 (346)
T PRK07589 186 ----SVAEAVEGADIITTVTAD 203 (346)
T ss_pred ----CHHHHHhcCCEEEEecCC
Confidence 135677899999999854
No 384
>PRK12861 malic enzyme; Reviewed
Probab=90.91 E-value=0.78 Score=47.11 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=59.5
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT 190 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~ 190 (236)
+++..+|++.|+|+.|..+++.|...|+. +|.++|..-+=..+- . +.+...|...+.. -++
T Consensus 186 ~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r---~-----~~l~~~k~~~a~~----~~~----- 248 (764)
T PRK12861 186 SIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGR---T-----TLMDPDKERFAQE----TDA----- 248 (764)
T ss_pred ChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCC---c-----ccCCHHHHHHHhh----cCC-----
Confidence 34567899999999999999999999996 899999665422211 1 1133334443322 121
Q ss_pred EEecCCCcchhhhcCCCcEEEEcCC-CHHHHHHHHHHHHHcCCcEEC
Q psy9587 191 SNETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSKSKISLF 236 (236)
Q Consensus 191 ~~~~~l~~~~~~~l~~~DlVI~~~d-~~~~r~~In~~c~~~~ip~I~ 236 (236)
. .-.+.+++.|++|.+.. +.-+...+..++. -|+||
T Consensus 249 ---~----~L~eai~~advliG~S~~g~ft~e~v~~Ma~---~PIIF 285 (764)
T PRK12861 249 ---R----TLAEVIGGADVFLGLSAGGVLKAEMLKAMAA---RPLIL 285 (764)
T ss_pred ---C----CHHHHHhcCCEEEEcCCCCCCCHHHHHHhcc---CCEEE
Confidence 1 12455667788876653 2334555666654 56664
No 385
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=90.90 E-value=1.3 Score=46.87 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=30.6
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+.++|+|||+|..|-.+|..|++.|. +++|+|...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 45789999999999999999999997 599998643
No 386
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=90.90 E-value=0.34 Score=44.12 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT 152 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve 152 (236)
.|+|||+|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 37899999999999999999996 59999987653
No 387
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=90.84 E-value=0.36 Score=44.75 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 48999999999999999999996 599999874
No 388
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=90.80 E-value=1.5 Score=39.39 Aligned_cols=33 Identities=18% Similarity=0.006 Sum_probs=26.6
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+.++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 446788888 57999999999999995 5777664
No 389
>PRK05717 oxidoreductase; Validated
Probab=90.79 E-value=1.1 Score=38.59 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=46.4
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccc----cCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCc
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTK----EDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNV 187 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~----sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v 187 (236)
++.++|+|.| .|++|.++++.|+..|. ++.++|.+.-.. ..+ .....+-..|+.... .+.+.+.+.+..+.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4557889999 57999999999999996 577777543211 112 222233356676543 233444555555445
Q ss_pred eEEEEe
Q psy9587 188 EVTSNE 193 (236)
Q Consensus 188 ~I~~~~ 193 (236)
.+-.+.
T Consensus 86 d~li~~ 91 (255)
T PRK05717 86 DALVCN 91 (255)
T ss_pred CEEEEC
Confidence 554443
No 390
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.76 E-value=1.3 Score=39.29 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=25.7
Q ss_pred cceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.++|+|.| +|.+|+.+++.|+..|.. +++++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r 36 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYT-VKATVR 36 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEc
Confidence 35789999 689999999999999875 555443
No 391
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=90.75 E-value=0.37 Score=41.77 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=28.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
-|+|||+|..|..+|..|++.|+. ++|+|.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~-v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR-VLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence 379999999999999999999995 88888775
No 392
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=90.74 E-value=0.34 Score=44.95 Aligned_cols=33 Identities=24% Similarity=-0.015 Sum_probs=28.1
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
++.++|.|||+|.+|..+|++|..+|+. +.+.+
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~-Vvv~~ 47 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVD-VVVGL 47 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCE-EEEEE
Confidence 4667899999999999999999999984 55544
No 393
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.73 E-value=1.1 Score=38.43 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=30.3
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|+| .|++|..+++.|+..|..++.+++.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4557788899 47999999999999999878888764
No 394
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=90.70 E-value=1.7 Score=36.87 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=26.5
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+.++|+|.| .|++|..+++.|+..|.. +.++|.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r 35 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDL 35 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence 456788898 578999999999998874 666653
No 395
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.69 E-value=0.36 Score=44.64 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=30.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..++|.|||+|.||+.+++-|...|+. +..+|+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~ 173 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP 173 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence 46688999999999999999999999998 666675
No 396
>PRK13984 putative oxidoreductase; Provisional
Probab=90.66 E-value=1.6 Score=43.18 Aligned_cols=35 Identities=17% Similarity=-0.004 Sum_probs=30.3
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
+..+|+|||+|..|...|..|.+.|+. ++++|.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~-v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE-VTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 456899999999999999999999985 88887554
No 397
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.59 E-value=0.36 Score=44.25 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=29.7
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.++.++|+|||+|.||.++|+.|...|+. +..+|.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~ 178 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEH 178 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECC
Confidence 46789999999999999999999999986 555553
No 398
>PLN02494 adenosylhomocysteinase
Probab=90.58 E-value=0.41 Score=46.54 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=32.6
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
+..++|+|+|+|.+|..+|+.+...|+ ++.++|.|..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 567899999999999999999999999 5888887654
No 399
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=90.46 E-value=0.31 Score=44.99 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 4689999999999999999999997 89999754
No 400
>PRK12831 putative oxidoreductase; Provisional
Probab=90.43 E-value=1.3 Score=42.51 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=29.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.+.|+|||+|..|...|..|++.|.. ++|+|..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence 457899999999999999999999985 8888843
No 401
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=90.39 E-value=1.2 Score=38.33 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=47.2
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccC----CCCCccccCCCcCCCh-HHHHHHHHHHhhCCCce
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKED----VNTAQFLAPHEDIGKN-RAKSSEARAQNLNPNVE 188 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sN----L~~rq~l~~~~dIGk~-Kaea~~~~L~~inp~v~ 188 (236)
..++|+|.| .|++|.++++.|+..|.. +.++|.+.-.... + ...+.+-..|+... -.+.+.+.+.+..+.+.
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARLAALEI-GPAAIAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 446788898 589999999999999975 7777766432221 2 22222233455433 34455555655555556
Q ss_pred EEEEe
Q psy9587 189 VTSNE 193 (236)
Q Consensus 189 I~~~~ 193 (236)
+-++.
T Consensus 83 ~li~~ 87 (257)
T PRK07067 83 ILFNN 87 (257)
T ss_pred EEEEC
Confidence 55553
No 402
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.39 E-value=1.9 Score=39.53 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=28.0
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
++.++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 34578899996 79999999999999985 777664
No 403
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=90.38 E-value=0.38 Score=47.19 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT 152 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve 152 (236)
.-|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 458999999999999999999998 58899976543
No 404
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=90.38 E-value=0.45 Score=46.27 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=32.5
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.+..++|+|+|+|.+|..+|+.|...|+ +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 4678899999999999999999999999 588887664
No 405
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.36 E-value=0.38 Score=44.08 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=29.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
..|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 468999999999999999999998 5999986643
No 406
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.33 E-value=1.2 Score=38.29 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=28.8
Q ss_pred cccceEEEEcCC---hhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPLT---RVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~G---gvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 355679999984 799999999999997 57777654
No 407
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.31 E-value=0.33 Score=44.60 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=29.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..|+|||+|.+|+.+|..|++.|+. ++|+|.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence 4689999999999999999999975 88998764
No 408
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=90.30 E-value=1.3 Score=42.99 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=58.5
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcC--CChHHHHHHHHHHhhCCCceEE
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDI--GKNRAKSSEARAQNLNPNVEVT 190 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dI--Gk~Kaea~~~~L~~inp~v~I~ 190 (236)
.....+|+|||+|.-|-..+..|++.|+. +++++.....- .+ ..|+--+. -+.=++-..+.|.+.. +++.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~-Vtv~e~~~~~G----Gl-l~yGIP~~kl~k~i~d~~i~~l~~~G--v~~~ 191 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHD-VTVFERVALDG----GL-LLYGIPDFKLPKDILDRRLELLERSG--VEFK 191 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCe-EEEeCCcCCCc----ee-EEecCchhhccchHHHHHHHHHHHcC--eEEE
Confidence 34457999999999999999999999998 66666433211 22 23332222 2222445556666665 5554
Q ss_pred EEecCC-CcchhhhcCCCcEEEEcCC
Q psy9587 191 SNETKV-DEISEEFVHGFDVVIATSC 215 (236)
Q Consensus 191 ~~~~~l-~~~~~~~l~~~DlVI~~~d 215 (236)
....-- +-...++++.||.|+.|+.
T Consensus 192 ~~~~vG~~it~~~L~~e~Dav~l~~G 217 (457)
T COG0493 192 LNVRVGRDITLEELLKEYDAVFLATG 217 (457)
T ss_pred EcceECCcCCHHHHHHhhCEEEEecc
Confidence 433221 2223566788999998875
No 409
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.22 E-value=1.5 Score=40.72 Aligned_cols=30 Identities=13% Similarity=-0.065 Sum_probs=25.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHhCCceEEEe
Q psy9587 117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLL 146 (236)
Q Consensus 117 ~~VlIVG-~GgvGsevak~La~~GVg~I~Lv 146 (236)
.+|+|+| .|-+|.++++.|.....-+|+.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~ 34 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTAL 34 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 5789998 79999999999997666677777
No 410
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=90.18 E-value=1.4 Score=37.23 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCCcch-hh---hc--CCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 172 RAKSSEARAQNLNPNVEVTSNETKVDEIS-EE---FV--HGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 172 Kaea~~~~L~~inp~v~I~~~~~~l~~~~-~~---~l--~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
-++.++++|++.+|.++|..+...+.+.. .+ .+ ++.|+|+.+...+....++.+.....+.+++
T Consensus 60 v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~ 129 (177)
T TIGR00696 60 VLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVM 129 (177)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEE
Confidence 36778999999999999988866665432 21 22 5799999999999999999988777766654
No 411
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=90.13 E-value=2.1 Score=39.17 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=29.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCc--eEEEeeCCcccc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVK--SVCLLDSGVVTK 153 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg--~I~LvD~D~Ve~ 153 (236)
+|.|||.||-|+.++..|...|+. .+..+|.|.-..
T Consensus 2 ~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L 39 (303)
T cd02191 2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDL 39 (303)
T ss_pred EEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHH
Confidence 478899999999999999999875 477778887433
No 412
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.10 E-value=0.41 Score=44.00 Aligned_cols=32 Identities=22% Similarity=-0.012 Sum_probs=26.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
+.++|+|||+|..|..++++|..+|+. +.+.+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 557899999999999999999999985 44433
No 413
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=90.08 E-value=0.83 Score=40.86 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=58.6
Q ss_pred EEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC--CCc
Q psy9587 121 TGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK--VDE 198 (236)
Q Consensus 121 IVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~--l~~ 198 (236)
+||+|..|..++.+|+..|. +++++|.+.-....+ .. .|...+....+.+. +.++-+.+.+.. +.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l-~~--------~g~~~~~s~~~~~~--~advVil~vp~~~~~~~ 68 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEA-VA--------AGAQAAASPAEAAE--GADRVITMLPAGQHVIS 68 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHH-HH--------cCCeecCCHHHHHh--cCCEEEEeCCChHHHHH
Confidence 48999999999999999996 588888764332223 11 12111112222222 224444444321 110
Q ss_pred -----ch-hhhcCCCcEEEEcC-CCHHHHHHHHHHHHHcCCcEE
Q psy9587 199 -----IS-EEFVHGFDVVIATS-CNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 199 -----~~-~~~l~~~DlVI~~~-d~~~~r~~In~~c~~~~ip~I 235 (236)
.. ...+..-.+||+++ ..+.....+.+.+.++|+.|+
T Consensus 69 v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~v 112 (288)
T TIGR01692 69 VYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFM 112 (288)
T ss_pred HHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 01 11233345777765 457777889999988888765
No 414
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=90.05 E-value=0.4 Score=43.58 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=28.3
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~-v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLK-IALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCE-EEEEeCCCc
Confidence 78999999999999999999984 888887653
No 415
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.03 E-value=0.48 Score=45.20 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=32.3
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
+..++|+|+|+|.+|..+++.+...|+. +.++|.|..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~ 229 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPI 229 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChh
Confidence 5678999999999999999999999995 888886653
No 416
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=90.03 E-value=2.5 Score=36.57 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=24.6
Q ss_pred EEEEc-CChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 119 YSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 119 VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
|+|.| +|-+|+.+++.|+..|. +++.++.+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 32 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-EVTILTRSP 32 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-EEEEEeCCC
Confidence 46777 68899999999999996 477777554
No 417
>PRK06185 hypothetical protein; Provisional
Probab=90.02 E-value=0.43 Score=44.16 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=28.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~ 38 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKH 38 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 4689999999999999999999985 8889965
No 418
>PRK06841 short chain dehydrogenase; Provisional
Probab=89.98 E-value=0.59 Score=39.94 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=28.7
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~ 48 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRS 48 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 45578999995 89999999999999974 7777654
No 419
>PRK12744 short chain dehydrogenase; Provisional
Probab=89.98 E-value=2.4 Score=36.46 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.5
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEE
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCL 145 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~L 145 (236)
++.++|+|.| .|++|.++++.|+..|...+.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 3456788888 6699999999999999874544
No 420
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.96 E-value=1.4 Score=38.38 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=28.9
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35577888885 7999999999999998 48888764
No 421
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.95 E-value=2.6 Score=39.04 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=26.6
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+..+|+|.|+ |-||+++++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 3367888996 8999999999999886 4777774
No 422
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.92 E-value=0.39 Score=48.10 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=29.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..|+|||.|-+|+.+|..|++.|.. ++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~-V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQ-VTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 4689999999999999999999985 99999874
No 423
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=89.88 E-value=0.39 Score=44.31 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=27.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeC
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDS 148 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~ 148 (236)
+|+|+|+ |.||+.++..|+..|+- .|.|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 4789999 99999999999998886 5999995
No 424
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=89.87 E-value=0.46 Score=44.03 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHh--CCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILS--GVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~--GVg~I~LvD~D~ 150 (236)
..|+|||+|.+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 3589999999999999999998 75 699999763
No 425
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.86 E-value=1.9 Score=39.18 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=27.3
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
..+|+|.|+|++|..++..+...|+ ++..+|.
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~ 198 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDI 198 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcC
Confidence 4689999999999999999999998 4666664
No 426
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.85 E-value=1.4 Score=40.80 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=49.2
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+|+||| .|.+|.++++.|...|.- ++.++-.. .+.|+. .. .....+...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~----------------~~~g~~-~~---------~~~~~~~~~-- 52 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD----------------RSAGRK-VT---------FKGKELEVN-- 52 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc----------------ccCCCe-ee---------eCCeeEEEE--
Confidence 378899 778999999999986554 33333211 111210 00 011122221
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.++ .+.+.++|+||.|+.+..++....++ .+.|..+|
T Consensus 53 ~~~---~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VI 89 (339)
T TIGR01296 53 EAK---IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVI 89 (339)
T ss_pred eCC---hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEE
Confidence 121 23347899999999988777766554 44565544
No 427
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=89.81 E-value=0.52 Score=45.68 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=30.5
Q ss_pred cccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|+|+||+|..++..|+..|+ +++++|.+
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~ 364 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRT 364 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 355789999999999999999999998 78888754
No 428
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.80 E-value=0.75 Score=42.74 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=52.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKV 196 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~l 196 (236)
.+|.|+|+|+=|+.+|+.|+..| ..++++..|.-...++ +... -.. +.-|++. .+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i-~~~~-~N~----------------~yLp~i~---lp~~l 59 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEI-NETR-ENP----------------KYLPGIL---LPPNL 59 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHH-HhcC-cCc----------------cccCCcc---CCccc
Confidence 36889999999999999999999 5577776543333333 1110 000 0011111 11111
Q ss_pred --CcchhhhcCCCcEEEEcCCCHHHHHHHHHH
Q psy9587 197 --DEISEEFVHGFDVVIATSCNPNQLIKIDDF 226 (236)
Q Consensus 197 --~~~~~~~l~~~DlVI~~~d~~~~r~~In~~ 226 (236)
+.+-.+.++++|+|+.++.+...+..+.++
T Consensus 60 ~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 60 KATTDLAEALDGADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred ccccCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence 112245667789888888887777777665
No 429
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=89.79 E-value=0.42 Score=46.02 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=27.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
..|+|||+|-+|+++|..|++.|+. ++|+|.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 4689999999999999999999986 888883
No 430
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.78 E-value=1.5 Score=39.92 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHhCCceEEEee
Q psy9587 117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD 147 (236)
.+|+|.| +|.+|+.+++.|+..|.. +++++
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYT-VHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe
Confidence 4688899 688999999999999875 54444
No 431
>PRK06823 ornithine cyclodeaminase; Validated
Probab=89.76 E-value=2.3 Score=39.03 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=50.5
Q ss_pred ccceEEEEcCChhHHHHHHHHHH-hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIIL-SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~-~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
...+++|+|+|..+-.-++.+.. ..+.++.++| ....|++++++.+++. .+++...
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~--------------------r~~~~a~~~~~~~~~~--~~~v~~~- 183 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWG--------------------RSETALEEYRQYAQAL--GFAVNTT- 183 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC--------------------CCHHHHHHHHHHHHhc--CCcEEEE-
Confidence 34688999999999999888764 2345555544 2234677778777654 2344332
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCH
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNP 217 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~ 217 (236)
+...+.+.++|+|+.|+.+.
T Consensus 184 ----~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 184 ----LDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred ----CCHHHHhcCCCEEEEecCCC
Confidence 22356678999999988653
No 432
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.71 E-value=0.89 Score=39.42 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=29.7
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
++.++++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 40 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDA 40 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 35578899995 7999999999999998 588877653
No 433
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=89.70 E-value=2.4 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=29.2
Q ss_pred ccccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.++.++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~ 447 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLN 447 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 345678999995 7999999999999997 57777743
No 434
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.70 E-value=0.53 Score=44.77 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=30.8
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..++|+|||+|.+|..+|+.+...|+. +..+|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~-V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGMR-VYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 57889999999999999999999999985 666674
No 435
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.68 E-value=0.38 Score=44.63 Aligned_cols=33 Identities=30% Similarity=0.257 Sum_probs=29.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence 3589999999999999999999985 89998764
No 436
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.67 E-value=2 Score=37.13 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=45.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChH-HHHHHHHHHhhCCCceEEEEec
Q psy9587 117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~I~~~~~ 194 (236)
.+|+|.| .|++|.++++.|+..|.. +++++.+.-..... ..- -+-..|+..+. .+.+.+.+.+....+.+-.+..
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~-~~~-~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~a 81 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPARAAPI-PGV-ELLELDVTDDASVQAAVDEVIARAGRIDVLVNNA 81 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcccc-CCC-eeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4678888 579999999999999976 77777664333323 221 22245665543 3445555555555555555443
No 437
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=89.66 E-value=1.9 Score=40.11 Aligned_cols=89 Identities=9% Similarity=-0.024 Sum_probs=54.4
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHH--hCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIIL--SGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS 191 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~--~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~ 191 (236)
+..+|+|||+ |-+|.++++.|.. .-+.+|.++-.+. .. ++.+-+ . ...+.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~----sa-G~~~~~-----------------~--~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEE----SA-GETLRF-----------------G--GKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccC----cC-CceEEE-----------------C--CcceEEE-
Confidence 3467899996 7799999999998 5677787775442 12 222111 0 1122333
Q ss_pred EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.++ ...++++|+||.|+.+..+..+..++ .+.|..+|
T Consensus 58 ---~~~---~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VI 94 (336)
T PRK08040 58 ---DAA---EFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVI 94 (336)
T ss_pred ---eCc---hhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEE
Confidence 111 12246899999999777666655555 45677665
No 438
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=89.66 E-value=7 Score=29.20 Aligned_cols=92 Identities=13% Similarity=0.002 Sum_probs=48.3
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEecC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETK 195 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~~ 195 (236)
..+|+-+|||. |......+...+-++++-+|... ...+.+++.+....- .+++.....
T Consensus 20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~--------------------~~~~~a~~~~~~~~~-~~~~~~~~~ 77 (124)
T TIGR02469 20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNP--------------------EALRLIERNARRFGV-SNIVIVEGD 77 (124)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCH--------------------HHHHHHHHHHHHhCC-CceEEEecc
Confidence 35788999976 76655555555557788888321 123444444444321 134444443
Q ss_pred CCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHH
Q psy9587 196 VDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229 (236)
Q Consensus 196 l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~ 229 (236)
...........||+|+...........+.++.+.
T Consensus 78 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~ 111 (124)
T TIGR02469 78 APEALEDSLPEPDRVFIGGSGGLLQEILEAIWRR 111 (124)
T ss_pred ccccChhhcCCCCEEEECCcchhHHHHHHHHHHH
Confidence 3211112235899999875433333444444443
No 439
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=89.66 E-value=0.44 Score=44.17 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=27.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
-|+|||+|..|+..|..|++.|.. +.|+|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE-TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence 489999999999999999999986 7788765
No 440
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.65 E-value=0.83 Score=39.02 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=45.3
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCC------CCccccCCCcCCChH-HHHHHHHHHhhCC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVN------TAQFLAPHEDIGKNR-AKSSEARAQNLNP 185 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~------~rq~l~~~~dIGk~K-aea~~~~L~~inp 185 (236)
++.++|+|.| .|++|.++++.|+..|. ++.++|.+.-....+. ..++.+-..|++... .+.+.+.+.+..+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4556788898 56999999999999997 5888876431111110 111122234665543 3445555555555
Q ss_pred CceEEEE
Q psy9587 186 NVEVTSN 192 (236)
Q Consensus 186 ~v~I~~~ 192 (236)
.+.+-.+
T Consensus 85 ~id~li~ 91 (252)
T PRK07035 85 RLDILVN 91 (252)
T ss_pred CCCEEEE
Confidence 5554443
No 441
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.63 E-value=2.9 Score=44.36 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=53.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCC--CcCCChHHHHHHHHHHhhCCCceEEEE
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPH--EDIGKNRAKSSEARAQNLNPNVEVTSN 192 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~--~dIGk~Kaea~~~~L~~inp~v~I~~~ 192 (236)
+.++|+|||+|..|...|..|++.|. +++|+|... .+ +.+.-+.- .-.++.-.+...+.+.++ .+++...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~----~~-GG~l~~gip~~rl~~e~~~~~~~~l~~~--Gv~~~~~ 500 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALH----VV-GGVLQYGIPSFRLPRDIIDREVQRLVDI--GVKIETN 500 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC----CC-cceeeccCCccCCCHHHHHHHHHHHHHC--CCEEEeC
Confidence 45689999999999999999999998 488988543 23 22211111 112222233444455554 3444332
Q ss_pred ecCCC-cch-hhhc--CCCcEEEEcCCC
Q psy9587 193 ETKVD-EIS-EEFV--HGFDVVIATSCN 216 (236)
Q Consensus 193 ~~~l~-~~~-~~~l--~~~DlVI~~~d~ 216 (236)
. .+. +.. .++. .+||-||.|++.
T Consensus 501 ~-~vg~~~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 501 K-VIGKTFTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred C-ccCCccCHHHHhhccCCCEEEEecCC
Confidence 1 111 111 2222 369999998865
No 442
>PRK11579 putative oxidoreductase; Provisional
Probab=89.62 E-value=2.1 Score=39.14 Aligned_cols=32 Identities=13% Similarity=-0.063 Sum_probs=21.5
Q ss_pred ceEEEEcCChhHHH-HHHHHHHh-CCceEEEeeC
Q psy9587 117 YVYSTGPLTRVGAE-IAKNIILS-GVKSVCLLDS 148 (236)
Q Consensus 117 ~~VlIVG~GgvGse-vak~La~~-GVg~I~LvD~ 148 (236)
.+|+|||+|.+|.. .+..+... |+.-..++|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~ 38 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS 38 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 57899999999974 56666553 4443445553
No 443
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.61 E-value=2.6 Score=35.79 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=25.3
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|+|.| .|++|..+++.|+..|.. +.++|.+
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r~ 34 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGAR-LYLAARD 34 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 567788 689999999999999974 7777744
No 444
>PLN00016 RNA-binding protein; Provisional
Probab=89.57 E-value=2.8 Score=38.72 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=57.3
Q ss_pred ccceEEEE----c-CChhHHHHHHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceE
Q psy9587 115 KIYVYSTG----P-LTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEV 189 (236)
Q Consensus 115 k~~~VlIV----G-~GgvGsevak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I 189 (236)
...+|+|+ | .|-+|+.+++.|+..|. ++++++.+.-....+ .- .. .... ..+.. .. +
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~-~~-----~~------~~~~-~~l~~--~~--v 112 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKM-KK-----EP------FSRF-SELSS--AG--V 112 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhh-cc-----Cc------hhhh-hHhhh--cC--c
Confidence 44678999 7 58899999999999995 577777543221111 00 00 0000 11111 12 3
Q ss_pred EEEecCCCcchhhhc--CCCcEEEEcCC-CHHHHHHHHHHHHHcCC-cEE
Q psy9587 190 TSNETKVDEISEEFV--HGFDVVIATSC-NPNQLIKIDDFCRSKSK-ISL 235 (236)
Q Consensus 190 ~~~~~~l~~~~~~~l--~~~DlVI~~~d-~~~~r~~In~~c~~~~i-p~I 235 (236)
+....++.+ -.+.+ .++|+||.+.. .......+-+.|++.|+ .||
T Consensus 113 ~~v~~D~~d-~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 113 KTVWGDPAD-VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred eEEEecHHH-HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334444332 11222 47899998864 34455667788888887 455
No 445
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.55 E-value=0.51 Score=43.47 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=28.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHhCCc------eEEEeeCC
Q psy9587 117 YVYSTGPL-TRVGAEIAKNIILSGVK------SVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~-GgvGsevak~La~~GVg------~I~LvD~D 149 (236)
.+|+|+|+ |.+|+.++..|+..|+- .|.++|-.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~ 42 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP 42 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence 46899998 99999999999998875 79999863
No 446
>PLN02827 Alcohol dehydrogenase-like
Probab=89.52 E-value=1.5 Score=40.57 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=29.1
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+...|+|+|+|++|..++..+...|+..+..+|.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4578999999999999999988999987777763
No 447
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.52 E-value=1.6 Score=40.86 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=50.0
Q ss_pred cceEEEEcC-ChhHHHHHHHHHH-hCC--ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEE
Q psy9587 116 IYVYSTGPL-TRVGAEIAKNIIL-SGV--KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTS 191 (236)
Q Consensus 116 ~~~VlIVG~-GgvGsevak~La~-~GV--g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~ 191 (236)
..+|.|||+ |-+|.++++.|.. ..+ .++.++... ...|+.= .+. ...+.++.
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~----------------~saGk~~------~~~--~~~l~v~~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK----------------RSAGKTV------QFK--GREIIIQE 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc----------------ccCCCCe------eeC--CcceEEEe
Confidence 357899996 7789999998884 443 345555422 2233320 000 01112221
Q ss_pred EecCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 192 NETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 192 ~~~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
+ +.+.++++|+||.|..+..++.+..+ +.+.|.++|
T Consensus 61 ----~---~~~~~~~~Divf~a~~~~~s~~~~~~-~~~~G~~VI 96 (347)
T PRK06728 61 ----A---KINSFEGVDIAFFSAGGEVSRQFVNQ-AVSSGAIVI 96 (347)
T ss_pred ----C---CHHHhcCCCEEEECCChHHHHHHHHH-HHHCCCEEE
Confidence 1 22334789999999987766655555 455676665
No 448
>PRK08507 prephenate dehydrogenase; Validated
Probab=89.50 E-value=0.57 Score=41.59 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=27.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D 149 (236)
+|+|||+|.+|+.++..|...|.. .++.+|.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 588999999999999999999973 67777764
No 449
>PRK08324 short chain dehydrogenase; Validated
Probab=89.49 E-value=1.9 Score=43.45 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=29.2
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~ 455 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD 455 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 3457899999 59999999999999998 58887743
No 450
>KOG1201|consensus
Probab=89.47 E-value=0.98 Score=41.43 Aligned_cols=80 Identities=14% Similarity=0.041 Sum_probs=56.1
Q ss_pred cccceEEEEcCC-hhHHHHHHHHHHhCCceEEEeeCCc--cccc-CCCCCc---cccCCCcCCChH-HHHHHHHHHhhCC
Q psy9587 114 YKIYVYSTGPLT-RVGAEIAKNIILSGVKSVCLLDSGV--VTKE-DVNTAQ---FLAPHEDIGKNR-AKSSEARAQNLNP 185 (236)
Q Consensus 114 lk~~~VlIVG~G-gvGsevak~La~~GVg~I~LvD~D~--Ve~s-NL~~rq---~l~~~~dIGk~K-aea~~~~L~~inp 185 (236)
.+...|+|-|.| |+|-++|..+++-|. ++.++|-.. .+++ +. .|+ ...-..|+++.+ ...+++++++-.-
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~-~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKE-IRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHH-HHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 466789999987 899999999999999 788888432 2221 11 221 222345777654 7888888888888
Q ss_pred CceEEEEecC
Q psy9587 186 NVEVTSNETK 195 (236)
Q Consensus 186 ~v~I~~~~~~ 195 (236)
.+.|-+.+..
T Consensus 114 ~V~ILVNNAG 123 (300)
T KOG1201|consen 114 DVDILVNNAG 123 (300)
T ss_pred CceEEEeccc
Confidence 8887776544
No 451
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=89.46 E-value=0.49 Score=44.34 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.|+|||+|..|+..|..|++.|+. +.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 589999999999999999999986 7777753
No 452
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=89.45 E-value=1.2 Score=45.01 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=28.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCC-ceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGV-KSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GV-g~I~LvD~D 149 (236)
.+|+|||+|.+|..+++.|...|. .++.++|.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 568999999999999999999995 468888854
No 453
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.40 E-value=0.53 Score=42.83 Aligned_cols=31 Identities=19% Similarity=0.035 Sum_probs=27.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|+|+|+|..|+.++..|+..|.. ++++|.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVP-VRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence 589999999999999999999864 8888875
No 454
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.39 E-value=0.69 Score=39.16 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.8
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
++..+++|+|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 34567899996 9999999999999997 478888654
No 455
>PRK06184 hypothetical protein; Provisional
Probab=89.34 E-value=0.46 Score=45.68 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=28.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 4689999999999999999999996 8888853
No 456
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.24 E-value=2.7 Score=42.87 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=30.3
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+.++|+|||+|..|...|..|++.|.. ++|+|..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~ 463 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL 463 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 456899999999999999999999985 8898864
No 457
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.24 E-value=0.7 Score=39.31 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=28.5
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~ 38 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRS 38 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCc
Confidence 45678899996 6999999999999998 47776643
No 458
>PRK08628 short chain dehydrogenase; Provisional
Probab=89.23 E-value=2.1 Score=36.70 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=27.8
Q ss_pred cccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|.| .|++|..+++.|+..|.. +.+++.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~ 40 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRS 40 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCC
Confidence 4567889998 569999999999999986 5555543
No 459
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.22 E-value=2.8 Score=37.80 Aligned_cols=34 Identities=18% Similarity=0.028 Sum_probs=28.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
...+|+|.|+|++|..++..+...|+..+..+|.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 3468999999999999999999999987776664
No 460
>PRK06847 hypothetical protein; Provisional
Probab=89.15 E-value=0.61 Score=42.48 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=28.8
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
...|+|||+|..|..+|..|.+.|+. ++|+|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecC
Confidence 35789999999999999999999996 7888754
No 461
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=89.15 E-value=0.52 Score=43.78 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..|+|||+|.+|..+|-.|++.|+. ++|+|..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~-V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLD-VTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEccC
Confidence 4589999999999999999999965 8898876
No 462
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=89.13 E-value=3.3 Score=41.48 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=25.9
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+..+|+|.| +|-+|+++++.|...|--+++.+|.
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 345799999 5889999999999864235666664
No 463
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=89.12 E-value=0.45 Score=43.50 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=27.5
Q ss_pred EEEEcCChhHHHHHHHHHHhC-CceEEEeeCCc
Q psy9587 119 YSTGPLTRVGAEIAKNIILSG-VKSVCLLDSGV 150 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~G-Vg~I~LvD~D~ 150 (236)
|+|||+|..|+.+|..|++.| +. ++|+|...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~-v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIK-IALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCce-EEEEeCCC
Confidence 789999999999999999999 85 78888653
No 464
>PRK07825 short chain dehydrogenase; Provisional
Probab=89.12 E-value=1.1 Score=39.01 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=47.1
Q ss_pred ccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCCccccc----CCCCCccccCCCcCCChH-HHHHHHHHHhhCCCce
Q psy9587 115 KIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSGVVTKE----DVNTAQFLAPHEDIGKNR-AKSSEARAQNLNPNVE 188 (236)
Q Consensus 115 k~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D~Ve~s----NL~~rq~l~~~~dIGk~K-aea~~~~L~~inp~v~ 188 (236)
+..+|+|.|+ ||+|..+++.|+..|.. +.+.+.+.-... .+ . ...+-..|+..+. .+.+.+.+.+.+..+.
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKETAAEL-G-LVVGGPLDVTDPASFAAFLDAVEADLGPID 80 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh-c-cceEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4467889995 79999999999999986 777765432211 12 1 1123345666544 3445556666656666
Q ss_pred EEEEe
Q psy9587 189 VTSNE 193 (236)
Q Consensus 189 I~~~~ 193 (236)
+-.+.
T Consensus 81 ~li~~ 85 (273)
T PRK07825 81 VLVNN 85 (273)
T ss_pred EEEEC
Confidence 55554
No 465
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.10 E-value=0.55 Score=38.76 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=28.3
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEee
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD 147 (236)
.++.++|+|||.|-.|..++..|+..| .+++++=
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEe
Confidence 467789999999999999999999999 7888864
No 466
>KOG2250|consensus
Probab=89.09 E-value=2.4 Score=41.32 Aligned_cols=39 Identities=28% Similarity=0.202 Sum_probs=34.6
Q ss_pred ccccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
.++.++|.|=|+|.+|++.++.|...|-.-|.|.|.+-+
T Consensus 248 ~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~ 286 (514)
T KOG2250|consen 248 GIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGV 286 (514)
T ss_pred CcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCcee
Confidence 467889999999999999999999999998888886654
No 467
>PLN02306 hydroxypyruvate reductase
Probab=89.06 E-value=0.56 Score=44.36 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=29.9
Q ss_pred ccccceEEEEcCChhHHHHHHHHH-HhCCceEEEeeCC
Q psy9587 113 SYKIYVYSTGPLTRVGAEIAKNII-LSGVKSVCLLDSG 149 (236)
Q Consensus 113 ~lk~~~VlIVG~GgvGsevak~La-~~GVg~I~LvD~D 149 (236)
.+..++|+|||+|.||.++|+.|. ..|+. +..+|..
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~-V~~~d~~ 198 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLY 198 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCE-EEEECCC
Confidence 477899999999999999999986 67874 6677753
No 468
>PRK08244 hypothetical protein; Provisional
Probab=89.03 E-value=0.5 Score=45.29 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK-TCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 3589999999999999999999996 7888843
No 469
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.00 E-value=3.6 Score=36.84 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=26.8
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEee
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLD 147 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD 147 (236)
++.++++|.|+ ||+|.++++.|+..|.. +.+.|
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~-Vv~~~ 43 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGAT-VVVND 43 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEec
Confidence 45678889995 58999999999999985 66655
No 470
>PRK06753 hypothetical protein; Provisional
Probab=88.99 E-value=0.61 Score=42.52 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=27.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
.|+|||+|..|..+|..|++.|+. ++|++.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~ 32 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEKN 32 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 589999999999999999999997 7888744
No 471
>PRK09126 hypothetical protein; Provisional
Probab=88.95 E-value=0.55 Score=43.13 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=29.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence 4589999999999999999999996 78888654
No 472
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.95 E-value=0.78 Score=39.36 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=28.6
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++.++|+|.|+ |++|.++++.|+..|.. +.+.|.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~ 43 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRD 43 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCC
Confidence 35578999995 89999999999999984 7777754
No 473
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.94 E-value=1.9 Score=39.37 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=29.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|+|+|+|++|..++..+...|+.++..+|.+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~ 221 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLN 221 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 45789999999999999999999999778777644
No 474
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.89 E-value=0.59 Score=38.58 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=23.1
Q ss_pred EEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 120 STGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 120 lIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+|||+|..|-.+|..|...|+..++|+|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 589999999999999999999889999954
No 475
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=88.82 E-value=0.84 Score=32.23 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=24.4
Q ss_pred EEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 121 TGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 121 IVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
|||+|-.|...|..|.+.|. +++|+|..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 79999999999999999999 69998844
No 476
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=88.80 E-value=2.6 Score=37.77 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=23.1
Q ss_pred cceEEEEcCChhHH-HHHHHHHHhC--CceEEEeeCC
Q psy9587 116 IYVYSTGPLTRVGA-EIAKNIILSG--VKSVCLLDSG 149 (236)
Q Consensus 116 ~~~VlIVG~GgvGs-evak~La~~G--Vg~I~LvD~D 149 (236)
..+|+|||||+++. ..+..+...+ +.-+.++|.+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~ 39 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD 39 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC
Confidence 46789999998775 4777777766 3445555533
No 477
>PRK08013 oxidoreductase; Provisional
Probab=88.77 E-value=0.53 Score=43.81 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=29.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence 4589999999999999999999986 88888654
No 478
>PRK08643 acetoin reductase; Validated
Probab=88.71 E-value=2 Score=36.77 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=26.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
++++|+| .|++|..+++.|+..|. ++.++|.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~ 35 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYN 35 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4677777 66999999999999997 47777754
No 479
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=88.68 E-value=7.4 Score=34.08 Aligned_cols=35 Identities=17% Similarity=-0.045 Sum_probs=26.9
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcc
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVV 151 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~V 151 (236)
...+|+-+|||+ | .++..++..|.++++-+|.|..
T Consensus 119 ~~~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~ 153 (250)
T PRK00517 119 PGKTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQ 153 (250)
T ss_pred CCCEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHH
Confidence 457899999987 6 4555678889888888886643
No 480
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.66 E-value=0.5 Score=43.50 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCc-eEEEeeCC
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVK-SVCLLDSG 149 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg-~I~LvD~D 149 (236)
.|+|||+|..|..+|..|++.|.| +++|+|..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~ 35 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAA 35 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 479999999999999999999743 58888864
No 481
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.65 E-value=2.2 Score=39.57 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=49.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHhCCc--eEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEe
Q psy9587 117 YVYSTGPL-TRVGAEIAKNIILSGVK--SVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNE 193 (236)
Q Consensus 117 ~~VlIVG~-GgvGsevak~La~~GVg--~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~ 193 (236)
.+|+|+|+ |-+|.++++.|...+.- ++..+-.. +..|++ +. .........
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~----------------~~aG~~--------l~--~~~~~l~~~- 57 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS----------------ESAGHS--------VP--FAGKNLRVR- 57 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc----------------ccCCCe--------ec--cCCcceEEe-
Confidence 57899995 78999999999965543 33343211 122332 00 111111111
Q ss_pred cCCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 194 TKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 194 ~~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.+ ...-++++|+||.|+.+..+.. +...+.+.|+.+|
T Consensus 58 -~~---~~~~~~~vD~vFla~p~~~s~~-~v~~~~~~G~~VI 94 (336)
T PRK05671 58 -EV---DSFDFSQVQLAFFAAGAAVSRS-FAEKARAAGCSVI 94 (336)
T ss_pred -eC---ChHHhcCCCEEEEcCCHHHHHH-HHHHHHHCCCeEE
Confidence 11 1112478999999998655554 4555566777765
No 482
>PRK05855 short chain dehydrogenase; Validated
Probab=88.65 E-value=2.5 Score=40.35 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.0
Q ss_pred cccceEEEEcC-ChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 114 YKIYVYSTGPL-TRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 114 lk~~~VlIVG~-GgvGsevak~La~~GVg~I~LvD~ 148 (236)
.+..+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 45567889985 89999999999999986 777664
No 483
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=88.65 E-value=0.56 Score=46.98 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCcccc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTK 153 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve~ 153 (236)
.-|+|||.|.+|+.+|..|++.|.. +.|+|.+.+..
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~-V~LvE~~d~a~ 107 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLR-VGLVEREDFSS 107 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCE-EEEEeccccCC
Confidence 5689999999999999999999996 88998775543
No 484
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=88.64 E-value=0.57 Score=43.05 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=26.8
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 119 YSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 119 VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
|+|||+|..|..+|..|++.|. ++.|+|..
T Consensus 2 viIiGaG~AGl~~A~~la~~g~-~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGL-RVQLIEPH 31 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 7899999999999999999998 48888854
No 485
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=88.64 E-value=0.5 Score=43.93 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=28.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
..|+|||+|.+|..+|-.|++.|+. ++|+|..
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 4689999999999999999999986 8888864
No 486
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=88.61 E-value=2.3 Score=38.49 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=25.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 118 VYSTGP-LTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 118 ~VlIVG-~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
+|+|.| .|.+|+.+++.|...|...+.++|.
T Consensus 3 ~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 3 KILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 578888 5789999999999999876767664
No 487
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.60 E-value=2.8 Score=36.37 Aligned_cols=77 Identities=10% Similarity=0.070 Sum_probs=46.8
Q ss_pred cccceEEEEcC---ChhHHHHHHHHHHhCCceEEEeeCCc----ccc--cCCCCCccccCCCcCCChH-HHHHHHHHHhh
Q psy9587 114 YKIYVYSTGPL---TRVGAEIAKNIILSGVKSVCLLDSGV----VTK--EDVNTAQFLAPHEDIGKNR-AKSSEARAQNL 183 (236)
Q Consensus 114 lk~~~VlIVG~---GgvGsevak~La~~GVg~I~LvD~D~----Ve~--sNL~~rq~l~~~~dIGk~K-aea~~~~L~~i 183 (236)
++.++++|.|+ +|+|.++++.|+..|.. +.+.|.+. .+. ..+ ..+..+-..|+..+. ++.+.+.+.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAE-VVLTGFGRALRLTERIAKRL-PEPAPVLELDVTNEEHLASLADRVREH 82 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCE-EEEecCccchhHHHHHHHhc-CCCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence 45578999996 79999999999999985 77776432 111 122 222233345676543 45555555554
Q ss_pred CCCceEEEE
Q psy9587 184 NPNVEVTSN 192 (236)
Q Consensus 184 np~v~I~~~ 192 (236)
...+.+-++
T Consensus 83 ~g~iD~li~ 91 (256)
T PRK07889 83 VDGLDGVVH 91 (256)
T ss_pred cCCCcEEEE
Confidence 444454444
No 488
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.59 E-value=0.55 Score=43.29 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
.|+|||+|.+|..+|..|++.|+. ++|+|...
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~-v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK-TTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe-EEEecCCC
Confidence 489999999999999999999985 89998653
No 489
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.58 E-value=3.2 Score=37.04 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=23.5
Q ss_pred cceEEEEc-CChhHHHHHHHHHHhCCceEE
Q psy9587 116 IYVYSTGP-LTRVGAEIAKNIILSGVKSVC 144 (236)
Q Consensus 116 ~~~VlIVG-~GgvGsevak~La~~GVg~I~ 144 (236)
.++|+|.| .|.+|+.+++.|+..|.. ++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~-V~ 33 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYT-VK 33 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EE
Confidence 35789999 689999999999999875 44
No 490
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.58 E-value=2.3 Score=38.58 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=29.0
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
...+|+|.|+|++|..++..+...|++++..++.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4568999999999999999999999977777764
No 491
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=88.57 E-value=4.5 Score=35.92 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=23.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEee
Q psy9587 118 VYSTGPL-TRVGAEIAKNIILSGV-KSVCLLD 147 (236)
Q Consensus 118 ~VlIVG~-GgvGsevak~La~~GV-g~I~LvD 147 (236)
+|+|.|+ |.+|+++++.|+..|. .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3678885 8999999999999884 3566554
No 492
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.56 E-value=1.4 Score=42.61 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=59.2
Q ss_pred cceEEEEcCChhHHHHHHH-HH----HhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEE
Q psy9587 116 IYVYSTGPLTRVGAEIAKN-II----LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVT 190 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~-La----~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~ 190 (236)
..+|.|||.|+++..-.-. +. ...+.+|.|+|-|. .|+- -=...+..-+.+.++.++|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~-------~r~~---------~i~~~~~~~v~~~g~~~kv~ 66 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDE-------ERLK---------IIAILAKKLVEEAGAPVKVE 66 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCH-------HHHH---------HHHHHHHHHHHhhCCCeEEE
Confidence 4578899999876543221 11 34557888888544 2220 00234555567777777776
Q ss_pred EEecCCCcchhhhcCCCcEEEEcC--CCHHHHHHHHHHHHHcCC
Q psy9587 191 SNETKVDEISEEFVHGFDVVIATS--CNPNQLIKIDDFCRSKSK 232 (236)
Q Consensus 191 ~~~~~l~~~~~~~l~~~DlVI~~~--d~~~~r~~In~~c~~~~i 232 (236)
.... -.+-|+++|+|+.+. +....+..=.++..++|+
T Consensus 67 ~ttd-----~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~ 105 (442)
T COG1486 67 ATTD-----RREALEGADFVITQIRVGGLEAREKDERIPLKHGL 105 (442)
T ss_pred EecC-----HHHHhcCCCEEEEEEeeCCcccchhhhccchhhCc
Confidence 6544 346789999999885 566666665556665553
No 493
>PLN00198 anthocyanidin reductase; Provisional
Probab=88.55 E-value=2.4 Score=38.21 Aligned_cols=34 Identities=9% Similarity=-0.091 Sum_probs=26.2
Q ss_pred ccceEEEEc-CChhHHHHHHHHHHhCCceEEEeeCC
Q psy9587 115 KIYVYSTGP-LTRVGAEIAKNIILSGVKSVCLLDSG 149 (236)
Q Consensus 115 k~~~VlIVG-~GgvGsevak~La~~GVg~I~LvD~D 149 (236)
+..+|+|.| +|.+|+.+++.|+..|. ++++++.|
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 346788898 77899999999999987 45555433
No 494
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.55 E-value=0.55 Score=43.48 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=28.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
..|+|||+|..|..+|..|++.|.. ++|+|...
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLR-IALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCE-EEEEecCC
Confidence 4689999999999999999999986 78887543
No 495
>PRK07236 hypothetical protein; Provisional
Probab=88.54 E-value=0.73 Score=42.56 Aligned_cols=34 Identities=12% Similarity=-0.197 Sum_probs=29.7
Q ss_pred cceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCc
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGV 150 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~ 150 (236)
...|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 46799999999999999999999986 88888553
No 496
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=88.52 E-value=3.1 Score=37.54 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=52.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 118 VYSTGPLTRVGAEIAKNIILSGV---KSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 118 ~VlIVG~GgvGsevak~La~~GV---g~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
+|.+||+|..|..++.-|...|. .+|.+.|++. ..++.+.+.++-. +
T Consensus 3 ~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~------------------------e~~~~l~~~~g~~-~----- 52 (266)
T COG0345 3 KIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE------------------------EKRAALAAEYGVV-T----- 52 (266)
T ss_pred eEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH------------------------HHHHHHHHHcCCc-c-----
Confidence 57899999999999999999994 4555544211 1122455555432 1
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHH
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFC 227 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c 227 (236)
...+.+.....|+||.|.-+......+.++-
T Consensus 53 --~~~~~~~~~~advv~LavKPq~~~~vl~~l~ 83 (266)
T COG0345 53 --TTDNQEAVEEADVVFLAVKPQDLEEVLSKLK 83 (266)
T ss_pred --cCcHHHHHhhCCEEEEEeChHhHHHHHHHhh
Confidence 2224466788999999998876666666554
No 497
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.49 E-value=2.2 Score=43.95 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=52.6
Q ss_pred cceEEEEcCChhHHHH-HHHHHHhCCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEI-AKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsev-ak~La~~GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..+|+|+|+|+.|... |+.|...|.. ++..|... . . .. +.|.+. .+.+ +.+
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~-V~~sD~~~-----~---------------~--~~-~~L~~~--gi~~--~~g 55 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYS-VSGSDLSE-----G---------------K--TV-EKLKAK--GARF--FLG 55 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCe-EEEECCCC-----C---------------h--HH-HHHHHC--CCEE--eCC
Confidence 3568999999999998 9999999987 66666321 0 0 01 224443 3333 222
Q ss_pred CCCcchhhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
. ..+.+.++|+||.+..-...... -+.+++.|+|++
T Consensus 56 ~----~~~~~~~~d~vV~SpgI~~~~p~-~~~a~~~gi~v~ 91 (809)
T PRK14573 56 H----QEEHVPEDAVVVYSSSISKDNVE-YLSAKSRGNRLV 91 (809)
T ss_pred C----CHHHcCCCCEEEECCCcCCCCHH-HHHHHHCCCcEE
Confidence 2 22456789999977532222222 334677888875
No 498
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=88.47 E-value=1.4 Score=40.53 Aligned_cols=93 Identities=10% Similarity=0.110 Sum_probs=49.9
Q ss_pred cceEEEEcCChhHHHHHHHHHHh-CCceEEEeeCCcccccCCCCCccccCCCcCCChHHHHHHHHHHhhCCCceEEEEec
Q psy9587 116 IYVYSTGPLTRVGAEIAKNIILS-GVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNET 194 (236)
Q Consensus 116 ~~~VlIVG~GgvGsevak~La~~-GVg~I~LvD~D~Ve~sNL~~rq~l~~~~dIGk~Kaea~~~~L~~inp~v~I~~~~~ 194 (236)
..+|+|||+|.+|...+..|.+. ++.-..++|.|.= + +....++ +. .+. ....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~e-------s------------~gla~A~---~~--Gi~--~~~~ 57 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPE-------S------------DGLARAR---RL--GVA--TSAE 57 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChh-------h------------HHHHHHH---Hc--CCC--cccC
Confidence 46799999999999988887764 2333334443320 0 0001111 11 111 1111
Q ss_pred CCCcch-hhhcCCCcEEEEcCCCHHHHHHHHHHHHHcCCcEE
Q psy9587 195 KVDEIS-EEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKISL 235 (236)
Q Consensus 195 ~l~~~~-~~~l~~~DlVI~~~d~~~~r~~In~~c~~~~ip~I 235 (236)
.+...- ..-+.+.|+|++|+.+. ........+.+.|+.+|
T Consensus 58 ~ie~LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VI 98 (302)
T PRK08300 58 GIDGLLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAI 98 (302)
T ss_pred CHHHHHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEE
Confidence 111100 01236799999999775 44555667778888776
No 499
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=88.47 E-value=0.62 Score=45.26 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHhCCceEEEeeCCccc
Q psy9587 117 YVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVT 152 (236)
Q Consensus 117 ~~VlIVG~GgvGsevak~La~~GVg~I~LvD~D~Ve 152 (236)
.-|+|||.|.+|+.+|..|++.|.+ +.|+|...+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~-V~LvEk~d~~ 41 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLS-VLLCEQDDLA 41 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCC
Confidence 4589999999999999999999997 8888876553
No 500
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.44 E-value=1.3 Score=41.41 Aligned_cols=34 Identities=21% Similarity=0.030 Sum_probs=28.3
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhCCceEEEeeC
Q psy9587 115 KIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDS 148 (236)
Q Consensus 115 k~~~VlIVG~GgvGsevak~La~~GVg~I~LvD~ 148 (236)
...+|+|.|+|++|..++..+...|+..+...|.
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~ 218 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDL 218 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 3468899999999999999999999987776553
Done!