RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9587
(236 letters)
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 136 bits (343), Expect = 1e-38
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
+GAEIAKN+IL+GVK + +LD VT ED AQFL +G+NRA++S RAQNLNP
Sbjct: 47 LGAEIAKNLILAGVKGLTMLDHEQVTPEDPG-AQFLIRTGSVGRNRAEASLERAQNLNPM 105
Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
V+V + +++ E F FD V T C+ + ++K+D C S
Sbjct: 106 VDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSI 151
Score = 39.0 bits (91), Expect = 8e-04
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 7 NNASTAMELTEDEAELYDRQIRL 29
++E+EA YDRQIRL
Sbjct: 3 EKEEAGGGISEEEAAQYDRQIRL 25
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 120 bits (303), Expect = 6e-32
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
G EI KN++L G+ S ++D V+ ED F IGKNRA+++ Q LN +
Sbjct: 43 TGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGKNRAEAAMEFLQELNSD 101
Query: 187 VEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
V + E + + + F F VV+AT + +++ D +
Sbjct: 102 VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQI 150
Score = 30.4 bits (68), Expect = 0.54
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 9 ASTAMELTEDEAELYDRQIRL 29
S A + + YDRQ+RL
Sbjct: 1 GSMAQLGKLLKEQKYDRQLRL 21
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 112 bits (280), Expect = 2e-28
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 112 QSYKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKN 171
Q+ + + L G EIAKN++L+GVKS+ + D V D++ QF +DIG+
Sbjct: 26 QTSNVLILGLKGL---GVEIAKNVVLAGVKSMTVFDPEPVQLADLS-TQFFLTEKDIGQK 81
Query: 172 RAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSC-NPNQLIKIDDFCRSK 230
R + A+ LN V V + F VV+AT + +KI++FC S
Sbjct: 82 RGDVTRAKLAELNAYVPVN---VLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSS 138
Query: 231 SK 232
Sbjct: 139 GI 140
Score = 88.7 bits (219), Expect = 2e-20
Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 22/182 (12%)
Query: 66 RRPAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGS------QSYKIYVY 119
+ + + + P + PR + G + K+++
Sbjct: 372 KFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLV 431
Query: 120 STGPLTRVGAEIAKNIILSGVKS-----VCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAK 174
+G + G E+ KN L G+ S + + D+ + K ++N QFL +D+GKN+++
Sbjct: 432 GSGAI---GCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLN-RQFLFRPKDVGKNKSE 487
Query: 175 SSEARAQNLNP--NVEVTSNETKVDEISE-----EFVHGFDVVIATSCNPNQLIKIDDFC 227
+ +NP ++ + KV +E F D V N + +D C
Sbjct: 488 VAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRC 547
Query: 228 RS 229
Sbjct: 548 VF 549
Score = 26.7 bits (58), Expect = 8.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 16 TEDEAELYDRQIRL 29
E + LY RQ+ +
Sbjct: 3 GEIDESLYSRQLYV 16
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 67.6 bits (165), Expect = 3e-13
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV 187
G E+ KN+ LSG + + ++D + ++N QFL +DIG+ +A+ + + PN
Sbjct: 52 GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKAEVAAEFLNDRVPNC 110
Query: 188 EVTSNETKVDEISEEFVHGFDVVI 211
V + K+ + ++ F F +++
Sbjct: 111 NVVPHFNKIQDFNDTFYRQFHIIV 134
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 64.2 bits (156), Expect = 4e-12
Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 7/158 (4%)
Query: 54 WNPKRGQNQRQDRRPAVPRTNLIYKKKVCPRWELNPRPSAYRAHTVTLTTLHTNWAGSQS 113
+ ++ + + + ++ P + + +L
Sbjct: 355 ASGRQTVDAALAAAQTNAAADWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTC-- 412
Query: 114 YKIYVYSTGPLTRVGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRA 173
K+ V G L G E+ KN+ LSG + + ++D + ++N QFL +DIG+ +A
Sbjct: 413 -KVLVIGAGGL---GCELLKNLALSGFRQIHVIDMDTIDVSNLNR-QFLFRPKDIGRPKA 467
Query: 174 KSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVI 211
+ + + PN V + K+ + ++ F F +++
Sbjct: 468 EVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 505
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 60.1 bits (145), Expect = 1e-10
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPNV 187
G E+ KN++L+G + L+D + ++N QFL + +G+++A+ ++ P
Sbjct: 29 GCELLKNLVLTGFSHIDLIDLDTIDVSNLNR-QFLFQKKHVGRSKAQVAKESVLQFYPKA 87
Query: 188 EVTSNETKV--DEISEEFVHGFDVVI 211
+ + + + + EF F +V+
Sbjct: 88 NIVAYHDSIMNPDYNVEFFRQFILVM 113
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 42.5 bits (100), Expect = 6e-05
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA-QFLAPHEDIGKNRAKSSEARAQNLNPN 186
G +++ +I GV+ + +D+G V N Q L ED GK +A+ + A + + P
Sbjct: 339 GCYVSRALIAWGVRKITFVDNGTV--SYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL 396
Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKI 223
++ T + + I H A + ++L +
Sbjct: 397 MDATGVKLSIPMIG----HKLVNEEAQHKDFDRLRAL 429
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 42.0 bits (99), Expect = 7e-05
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 160 QFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEIS-EEFVHGFDVVI 211
Q L +D+GKN+ + + N + V+ +++ + V D+ +
Sbjct: 161 QVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 213
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 40.9 bits (97), Expect = 1e-04
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 166 EDIGKNRAKSSEARAQNLNPNVEVTSNETKVD-EISEEFVHGFDVVI 211
+G+ + +S+ +NP++ +T +D + D+V+
Sbjct: 80 ATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVL 126
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 40.2 bits (95), Expect = 2e-04
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 166 EDIGKNRAKSSEARAQNLNPNVEVTSNETKVD-EISEEFVHGFDVVI 211
EDI + +++ S+ R LNP++++T+ + ++ E ++ V DVV+
Sbjct: 77 EDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVL 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 54/241 (22%)
Query: 15 LTEDEAE----LYDRQIRLTPLPLWNSLKMRQSCTTDKFDSGEWNPKRG----QNQRQDR 66
L+++E + D L W +L +Q KF + + R
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRL-FW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 67 RPAVPRTNLIYKKKVCPRWELNPRPSAY---RAHTVTLTTLHTNWAGSQSYKIYVYSTGP 123
+P++ Y ++ + N + Y R L + P
Sbjct: 104 QPSMMTRM--YIEQRDRLYNDNQVFAKYNVSRLQPYL--KLRQA----------LLELRP 149
Query: 124 LTRVGAEIAKNIILSGV----KSV----CLLDSGVVTKED-----VNTAQFLAPHEDIGK 170
AKN+++ GV K+ L V K D +N +P + +
Sbjct: 150 --------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-E 200
Query: 171 NRAKSSEARAQNLNPNVEVTSN-ETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRS 229
K N + +SN + ++ I E ++ + N L+ + + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR----LLKSKPYENCLLVLLNVQNA 256
Query: 230 K 230
K
Sbjct: 257 K 257
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 36.9 bits (86), Expect = 0.003
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 128 GAEIAKNIILSGVKSVCLLDSGVVTKEDVNTA-QFLAPHEDIGKNRAKSSEARAQNLNPN 186
G +++ +I GV+ + +D+G V N Q L ED GK +A+ + A + + P
Sbjct: 46 GCYVSRALIAWGVRKITFVDNGTV--SYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL 103
Query: 187 VEVTSNETKV----------------DEISEEFVHGFDVVI 211
++ T + + + + D++
Sbjct: 104 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIF 144
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 35.7 bits (83), Expect = 0.007
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 160 QFLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEI-------------SEEFVHG 206
F PH G ++ +++E +N+NP+V + + + E
Sbjct: 79 LFFQPH-QAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKP 137
Query: 207 FDVVI 211
D+V+
Sbjct: 138 VDLVL 142
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase;
HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3
d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Length = 358
Score = 31.5 bits (72), Expect = 0.24
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 124 LTRVGAEIAKNII-LSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQN 182
L + + I N++ L+ + + + LA +
Sbjct: 23 LLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTS 82
Query: 183 LNPN--VEVTSNETKVDEISEEFVHGFDVVIATSCN 216
P V+ TS+ ++ +G + + N
Sbjct: 83 PKPVILVDNTSSAYIAGFYTKFVENGISIA---TPN 115
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 27.6 bits (62), Expect = 3.5
Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 186 NVEVTSNETKVDEISEEFVHGFDVVIATSCNP---NQLIKIDDFCRSKSKISLF 236
+ + G DVVI + Q ++ ++ + +
Sbjct: 233 DPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRL---AKAGGTVVIL 283
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 27.4 bits (60), Expect = 5.4
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 89 PRPSAYRAHTVTLTTLHTNWAGSQSYK 115
P P + + NW+
Sbjct: 9 PTPPNFPNDIALFQQAYQNWSKEIMLD 35
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.0 bits (60), Expect = 5.8
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 172 RAKSSEARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVI-ATSCNPNQLIKIDDFCRSK 230
R + + ++ D++ + V FDV+I AT + N L +
Sbjct: 213 REPTEVEQTVIEETKTNYYNSSNGYDKLKDS-VGKFDVIIDATGADVNILGNVIPLLGRN 271
Query: 231 SKISLF 236
+ LF
Sbjct: 272 GVLGLF 277
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 26.8 bits (60), Expect = 6.1
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 165 HEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEFV-----HGFDVVIATSCNPNQ 219
H ++ ++ V ++ D + G VV + + +
Sbjct: 7 HSSGVDLGTENLYFQSMANLRKVLIS------DSLDPCCRKILQDGGLQVVEKQNLSKEE 60
Query: 220 LIK-IDDF----CRSKSKI 233
LI + D RS +K+
Sbjct: 61 LIAELQDCEGLIVRSATKV 79
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 26.8 bits (60), Expect = 6.4
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 197 DEISEEFV-----HGFDVVIATSCNPNQLIK-IDDF----CRSKSKI 233
D I E + G V + +L+ I ++ RS++K+
Sbjct: 12 DPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKV 58
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 26.4 bits (59), Expect = 8.0
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 181 QNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNP 217
Q ++ + T V ++ E + +++ +
Sbjct: 17 QEALKDLSLKIYTTDVSKVPENELKKAELISVFVYDK 53
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 26.4 bits (59), Expect = 9.7
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 178 ARAQNLNPNVEVTSNETKVDEISEEFVHGFDVVIATSCNP---NQLIKIDDFCRSKSKIS 234
A A+ + E ++ + G +V++ S N +Q + +
Sbjct: 203 AFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMA---LIPGGEAR 259
Query: 235 LF 236
+
Sbjct: 260 IL 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.383
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,419,171
Number of extensions: 184366
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 25
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)