RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9587
         (236 letters)



>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
           protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 529

 Score =  103 bits (257), Expect = 6e-26
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
            G EI KN++L G+ S  ++D   V+ ED     F      IGKNRA+++    Q LN +
Sbjct: 36  TGTEILKNLVLPGIGSFTIIDGNQVSGEDAG-NNFFLQRSSIGKNRAEAAMEFLQELNSD 94

Query: 187 VEVTSNETKVDEISE---EFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
           V  +  E   + + +    F   F VV+AT    +  +++ D   +   
Sbjct: 95  VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQI 143


>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 426

 Score = 78.6 bits (193), Expect = 2e-17
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G E+ KN+ LSG + + ++D   +   ++N  QFL   +DIG+ +A+ +     +  PN
Sbjct: 48  LGCELLKNLALSGFRQIHVIDMDTIDVSNLN-RQFLFRPKDIGRPKAEVAAEFLNDRVPN 106

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSK 232
             V  +  K+ + ++ F   F +++    +      I+    S   
Sbjct: 107 CNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLN 152


>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
           MoeB {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 14/107 (13%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 127 VGAEIAKNIILSGVKSVCLLDSGVVTKEDVNTAQFLAPHEDIGKNRAKSSEARAQNLNPN 186
           +G   ++ +  +GV ++ LLD   V+  ++           +G+ + +S+      +NP+
Sbjct: 41  LGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTL-HSDATVGQPKVESARDALTRINPH 99

Query: 187 VEVTSNETKVDEISEEFVHGFDVVIATSCNPNQLIKIDDFCRSKSKI 233
           + +T     +D+     +     ++    +   +    +     +K+
Sbjct: 100 IAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKV 146



 Score = 33.4 bits (75), Expect = 0.014
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 14 ELTEDEAELYDRQIRLTPLPLWNSLKMRQS 43
          EL++ E   Y+RQI L          ++ S
Sbjct: 2  ELSDQEMLRYNRQIILRGFDFDGQEALKDS 31


>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
           {Bradyrhizobium japonicum [TaxId: 375]}
          Length = 264

 Score = 29.2 bits (64), Expect = 0.34
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 161 FLAPHEDIGKNRAKSSEARAQNLNPNVEVTSNETKVDEISEEF 203
            L PH ++   +AK +E +    NP ++     T    +SE+F
Sbjct: 210 LLGPHPEVYGMQAKRAEMKDGAPNPFIKPGELVTYATSLSEDF 252


>d1wgoa_ b.1.3.1 (A:) VPS10 domain-containing receptor SorCS2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 123

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 92  SAYRAHTVTLTTLHTNWAGSQSYKIYVYSTGPLT 125
            +   + V++     N AG     ++V  +GP +
Sbjct: 91  ESPGIYRVSVRA--ENTAGHDEAVLFVQVSGPSS 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 836,187
Number of extensions: 36197
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 7
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.2 bits)