BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9589
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
V +LA+N NL L LSGCS ++ +L L C +L L ++ C FT+ Q
Sbjct: 135 VNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV----- 188
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQA 125
AV ++E + L LSG + L + L L +RC L L+++ + FQ
Sbjct: 189 ---AVAHVSE---TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242
Query: 126 LARNCRLLAKMDLEECVLITDATLIHLA 153
+ L + L C I TL+ L
Sbjct: 243 FFQ-LNYLQHLSLSRCYDIIPETLLELG 269
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 48 VASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQL 107
++ CS+ + + L L D V +LA+N NL L LSGCS ++ +L L C +L
Sbjct: 114 LSQCSKLQNLSLEGLR--LSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRL 170
Query: 108 HTLEVASCSQFTDTGFQ-ALARNCRLLAKMDL 138
L ++ C FT+ Q A+A + +++L
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 21/170 (12%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQ------ 60
V +LA+N NL L LSGCS ++ +L L C +L L ++ C FT+ Q
Sbjct: 97 VNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 155
Query: 61 ----------ALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
+ L S + +L CPNL +L LS L + Q QL+ L
Sbjct: 156 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----QEFFQLNYL 211
Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE 160
+ S S+ D + L + L+ ++ D TL L P L+
Sbjct: 212 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 261
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 48 VASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQL 107
++ CS+ + + L L D V +LA+N NL L LSGCS ++ +L L C +L
Sbjct: 76 LSQCSKLQNLSLEGLR--LSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRL 132
Query: 108 HTLEVASCSQFTDTGFQ-ALARNCRLLAKMDL 138
L ++ C FT+ Q A+A + +++L
Sbjct: 133 DELNLSWCFDFTEKHVQVAVAHVSETITQLNL 164
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 39.7 bits (91), Expect = 7e-04, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 47/193 (24%)
Query: 4 FITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA 63
F + L CPNL L L+ L L L QR QL L G+ A
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTG--------GYTAEV 249
Query: 64 RGLLDSAVLSLAENCPNLYYLCLSG---------------CSQLTDASL----------I 98
R + S + C L CLSG CS+LT +L +
Sbjct: 250 RPDVYSGLSVALSGCKELR--CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307
Query: 99 VLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMD--------LEECVLITDATLI 150
L +C +L L V D G + LA C+ L ++ +E V +T+ L+
Sbjct: 308 KLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365
Query: 151 HLALGCPRLEKLI 163
+++GCP+LE ++
Sbjct: 366 SVSMGCPKLESVL 378
Score = 36.2 bits (82), Expect = 0.010, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
++ L CP L L + + DA L VLA C L L V F AL
Sbjct: 306 LVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT--- 360
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRC-----HQLHTLEVASCSQFT-- 119
+ ++S++ CP L + L C Q+T+A+LI +A+ +L +E + T
Sbjct: 361 -EQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418
Query: 120 --DTGFQALARNCR 131
D GF A+ +C+
Sbjct: 419 PLDIGFGAIVEHCK 432
Score = 35.0 bits (79), Expect = 0.020, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEE 140
+TD L ++A+ L ++SC F+ G A+A CR L ++DL E
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 52
LAE CPNL +L LSG +++ D S I ++ L +L++ +C
Sbjct: 88 LAEKCPNLKHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCE 129
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 74 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 116
LAE CPNL +L LSG +++ D S I ++ L +L++ +C
Sbjct: 88 LAEKCPNLKHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCE 129
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 52
LAE CPNL +L LSG +++ D S I ++ L +L++ +C
Sbjct: 83 LAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCE 124
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 74 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 116
LAE CPNL +L LSG +++ D S I ++ L +L++ +C
Sbjct: 83 LAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCE 124
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 32.0 bits (71), Expect = 0.17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
+L + CPNL L + + D L VLAQ C QL L + + + G + +
Sbjct: 312 TLIQKCPNLE--VLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD--EQGMEDEEGLVSQ 367
Query: 69 SAVLSLAENCPNLYYLCLSGCSQLTDASL 97
+++LA+ C L Y+ + S +T+ SL
Sbjct: 368 RGLIALAQGCQELEYMAVY-VSDITNESL 395
Score = 30.8 bits (68), Expect = 0.39, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 92 LTDASLIVLAQ-RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEE 140
++D L LA+ R L TL++ CS FT G ++ +CR + + +EE
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 73 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRL 132
+L + CPNL L + + D L VLAQ C QL L + + + G +
Sbjct: 312 TLIQKCPNLE--VLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD--EQGME-------- 359
Query: 133 LAKMDLEECVLITDATLIHLALGCPRLEKL 162
+E L++ LI LA GC LE +
Sbjct: 360 ------DEEGLVSQRGLIALAQGCQELEYM 383
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 30/139 (21%)
Query: 28 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------------------- 66
++ LI LAQ C +L + V S T+ +++ L
Sbjct: 365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423
Query: 67 LDSAVLSLAENCPNL----YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTG 122
LD+ V SL C L +YL G LTD L + Q + + + + +D G
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLRQGG---LTDLGLSYIGQYSPNVRWMLLGYVGE-SDEG 479
Query: 123 FQALARNCRLLAKMDLEEC 141
+R C L K+++ C
Sbjct: 480 LMEFSRGCPNLQKLEMRGC 498
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 3 IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51
IF + LAE PNL +L LSG ++L D S + ++ L +L++ +C
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 74 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115
LAE PNL +L LSG ++L D S + ++ L +L++ +C
Sbjct: 90 LAEKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNC 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,085,874
Number of Sequences: 62578
Number of extensions: 132922
Number of successful extensions: 372
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 24
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)