Query psy9589
Match_columns 163
No_of_seqs 104 out of 1495
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 23:32:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341|consensus 99.8 1.1E-19 2.4E-24 133.8 5.5 157 6-162 181-377 (483)
2 KOG4341|consensus 99.7 7.2E-17 1.6E-21 119.2 4.7 156 7-162 156-351 (483)
3 KOG1947|consensus 99.6 2.7E-15 5.8E-20 116.1 10.6 145 8-162 181-326 (482)
4 KOG2120|consensus 99.5 3.3E-14 7.2E-19 101.7 8.9 142 7-151 202-358 (419)
5 KOG1947|consensus 99.4 2E-12 4.3E-17 100.1 10.8 123 7-141 206-331 (482)
6 KOG2120|consensus 99.4 1.8E-13 3.9E-18 97.9 4.4 145 15-162 185-343 (419)
7 KOG1909|consensus 99.4 5.9E-12 1.3E-16 91.6 10.8 152 7-162 84-275 (382)
8 cd00116 LRR_RI Leucine-rich re 99.4 5.3E-11 1.2E-15 87.8 14.8 69 79-150 193-268 (319)
9 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-10 3.7E-15 85.0 15.9 72 75-149 217-295 (319)
10 KOG3207|consensus 99.3 1.5E-12 3.2E-17 97.2 2.3 123 9-147 140-262 (505)
11 KOG3665|consensus 99.2 4.2E-10 9.1E-15 90.7 10.7 133 10-162 143-280 (699)
12 KOG3665|consensus 99.1 3.1E-10 6.7E-15 91.4 7.9 132 14-163 121-256 (699)
13 KOG3207|consensus 99.0 1.9E-10 4.1E-15 86.1 3.0 122 6-142 112-233 (505)
14 KOG1909|consensus 99.0 6.5E-09 1.4E-13 76.0 9.9 135 15-162 157-303 (382)
15 COG5238 RNA1 Ran GTPase-activa 98.9 4.4E-08 9.6E-13 70.0 10.7 146 7-156 84-266 (388)
16 PF14580 LRR_9: Leucine-rich r 98.9 6.1E-10 1.3E-14 75.3 1.3 124 15-163 19-146 (175)
17 KOG3864|consensus 98.7 3.3E-08 7.2E-13 67.4 4.4 83 77-160 123-207 (221)
18 PF14580 LRR_9: Leucine-rich r 98.6 1.6E-08 3.5E-13 68.5 1.8 114 7-141 34-150 (175)
19 KOG3864|consensus 98.5 7.1E-08 1.5E-12 65.8 3.2 80 80-162 102-181 (221)
20 PLN00113 leucine-rich repeat r 98.5 1.4E-07 3E-12 79.4 5.3 143 12-162 90-241 (968)
21 PLN00113 leucine-rich repeat r 98.5 1.4E-07 3.1E-12 79.3 5.3 81 76-162 185-265 (968)
22 KOG2982|consensus 98.4 8.3E-08 1.8E-12 69.4 1.8 98 3-115 59-156 (418)
23 KOG2982|consensus 98.3 1E-06 2.2E-11 63.9 3.8 152 4-160 86-252 (418)
24 KOG4194|consensus 98.2 2.1E-07 4.6E-12 72.7 -1.1 124 11-141 289-426 (873)
25 PLN03210 Resistant to P. syrin 98.0 7E-06 1.5E-10 70.5 4.8 39 14-54 777-815 (1153)
26 smart00367 LRR_CC Leucine-rich 97.9 1.7E-05 3.6E-10 36.4 2.8 24 40-63 1-24 (26)
27 KOG2123|consensus 97.9 5.2E-06 1.1E-10 59.8 1.5 61 76-141 38-98 (388)
28 KOG0618|consensus 97.9 1.9E-06 4.1E-11 70.5 -1.0 39 103-143 450-488 (1081)
29 PLN03210 Resistant to P. syrin 97.9 2.4E-05 5.3E-10 67.3 5.2 110 11-145 798-907 (1153)
30 KOG4194|consensus 97.8 4.7E-06 1E-10 65.5 0.7 58 80-141 174-231 (873)
31 smart00367 LRR_CC Leucine-rich 97.8 3.9E-05 8.5E-10 35.1 3.1 24 130-153 1-24 (26)
32 KOG0618|consensus 97.7 1.2E-05 2.5E-10 66.1 1.4 123 9-141 377-510 (1081)
33 KOG1259|consensus 97.7 2.8E-05 6E-10 56.8 2.7 103 16-145 285-387 (490)
34 PF13855 LRR_8: Leucine rich r 97.7 2.5E-06 5.5E-11 47.6 -2.4 59 79-141 1-59 (61)
35 KOG2739|consensus 97.5 2.9E-05 6.3E-10 55.1 0.8 84 77-163 63-149 (260)
36 KOG2739|consensus 97.5 5.5E-05 1.2E-09 53.8 1.9 39 13-51 63-101 (260)
37 PF13855 LRR_8: Leucine rich r 97.4 7.7E-06 1.7E-10 45.6 -2.4 37 77-115 23-59 (61)
38 KOG4237|consensus 97.4 7.7E-05 1.7E-09 56.2 1.9 41 12-56 88-130 (498)
39 KOG1859|consensus 97.4 3E-05 6.5E-10 62.6 -0.4 35 77-115 185-219 (1096)
40 KOG1259|consensus 97.2 0.00032 7E-09 51.4 3.4 109 10-142 302-410 (490)
41 PLN03150 hypothetical protein; 97.2 0.00085 1.8E-08 54.4 6.0 62 77-141 464-525 (623)
42 COG5238 RNA1 Ran GTPase-activa 97.1 0.0051 1.1E-07 44.7 8.0 64 76-141 211-282 (388)
43 KOG0444|consensus 97.1 0.00023 5.1E-09 57.0 1.3 52 38-89 123-183 (1255)
44 PF12799 LRR_4: Leucine Rich r 97.0 0.00086 1.9E-08 34.7 2.9 37 105-145 1-37 (44)
45 PF12799 LRR_4: Leucine Rich r 96.8 0.0021 4.6E-08 33.2 3.3 37 15-55 1-37 (44)
46 KOG1644|consensus 96.8 0.00049 1.1E-08 47.5 1.1 87 38-140 61-149 (233)
47 PLN03150 hypothetical protein; 96.8 0.0019 4.1E-08 52.4 4.5 64 77-145 440-503 (623)
48 PF13516 LRR_6: Leucine Rich r 96.8 0.0011 2.4E-08 29.5 1.7 21 41-62 2-22 (24)
49 KOG2123|consensus 96.5 0.0013 2.8E-08 47.8 1.6 113 14-151 18-134 (388)
50 PF13516 LRR_6: Leucine Rich r 96.5 0.0025 5.5E-08 28.2 2.0 21 131-152 2-22 (24)
51 KOG1859|consensus 96.4 0.00041 9E-09 56.3 -1.8 82 36-141 182-264 (1096)
52 KOG4308|consensus 96.3 0.0027 5.8E-08 49.9 2.5 129 10-152 167-310 (478)
53 KOG3763|consensus 96.3 0.01 2.2E-07 46.8 5.4 90 34-137 211-307 (585)
54 KOG0444|consensus 96.2 0.00057 1.2E-08 54.9 -1.9 40 103-145 337-376 (1255)
55 KOG3763|consensus 96.0 0.015 3.3E-07 45.8 5.0 93 69-163 208-307 (585)
56 KOG1644|consensus 95.9 0.0041 8.9E-08 43.1 1.3 89 11-115 60-150 (233)
57 KOG4308|consensus 95.7 0.0099 2.1E-07 46.8 3.1 149 8-161 108-294 (478)
58 PRK15387 E3 ubiquitin-protein 95.4 0.016 3.4E-07 48.3 3.4 23 129-152 443-465 (788)
59 KOG4579|consensus 95.4 0.0046 1E-07 40.4 0.3 114 8-141 17-133 (177)
60 PRK15387 E3 ubiquitin-protein 95.4 0.039 8.5E-07 46.0 5.5 34 79-119 282-315 (788)
61 KOG0472|consensus 95.4 0.014 3.1E-07 44.6 2.8 41 8-51 428-468 (565)
62 KOG4658|consensus 95.3 0.018 3.8E-07 48.7 3.5 12 103-114 640-651 (889)
63 KOG4658|consensus 95.2 0.043 9.3E-07 46.5 5.1 110 12-141 542-652 (889)
64 smart00368 LRR_RI Leucine rich 95.1 0.035 7.6E-07 25.6 2.8 21 132-153 3-23 (28)
65 KOG0617|consensus 95.0 0.00038 8.3E-09 47.1 -5.8 12 77-88 100-111 (264)
66 smart00368 LRR_RI Leucine rich 94.9 0.05 1.1E-06 25.1 2.9 23 41-64 2-24 (28)
67 PRK15386 type III secretion pr 94.5 0.08 1.7E-06 40.9 4.8 37 12-54 49-85 (426)
68 KOG0531|consensus 94.5 0.012 2.6E-07 45.4 0.4 104 12-141 92-196 (414)
69 KOG4237|consensus 94.0 0.033 7.1E-07 42.6 1.7 15 37-51 270-284 (498)
70 PRK15370 E3 ubiquitin-protein 93.8 0.18 4E-06 42.1 5.9 67 79-152 367-435 (754)
71 PF07723 LRR_2: Leucine Rich R 93.6 0.055 1.2E-06 24.5 1.5 26 16-41 1-26 (26)
72 KOG0617|consensus 93.5 0.00079 1.7E-08 45.6 -6.7 82 14-119 32-115 (264)
73 PF13504 LRR_7: Leucine rich r 92.4 0.092 2E-06 21.1 1.2 11 131-141 1-11 (17)
74 PRK15370 E3 ubiquitin-protein 91.8 0.64 1.4E-05 39.0 6.4 32 15-51 199-230 (754)
75 KOG3735|consensus 91.1 0.98 2.1E-05 33.9 6.0 73 28-101 185-276 (353)
76 KOG4579|consensus 90.9 0.098 2.1E-06 34.4 0.7 61 77-142 51-111 (177)
77 COG4886 Leucine-rich repeat (L 90.3 0.25 5.5E-06 37.7 2.7 13 39-51 161-173 (394)
78 KOG0531|consensus 88.6 0.13 2.8E-06 39.8 -0.1 83 11-116 114-197 (414)
79 PF00560 LRR_1: Leucine Rich R 86.2 0.35 7.6E-06 20.7 0.7 13 132-145 1-13 (22)
80 KOG3735|consensus 84.5 3.8 8.3E-05 30.9 5.7 88 69-158 188-281 (353)
81 COG4886 Leucine-rich repeat (L 84.5 0.73 1.6E-05 35.2 2.1 59 77-141 161-219 (394)
82 PF03382 DUF285: Mycoplasma pr 83.3 0.87 1.9E-05 28.8 1.8 108 34-160 4-114 (120)
83 KOG0472|consensus 83.2 0.38 8.3E-06 37.2 0.1 42 100-145 247-288 (565)
84 PF03382 DUF285: Mycoplasma pr 82.9 1.1 2.3E-05 28.4 2.1 106 11-134 7-114 (120)
85 PF13306 LRR_5: Leucine rich r 82.4 0.19 4.2E-06 31.7 -1.5 119 12-160 9-129 (129)
86 PRK15386 type III secretion pr 79.8 1.1 2.4E-05 34.8 1.6 71 39-140 50-121 (426)
87 smart00369 LRR_TYP Leucine-ric 76.5 2.6 5.6E-05 18.5 1.7 15 131-146 2-16 (26)
88 smart00370 LRR Leucine-rich re 76.5 2.6 5.6E-05 18.5 1.7 15 131-146 2-16 (26)
89 smart00365 LRR_SD22 Leucine-ri 70.6 4.7 0.0001 18.1 1.8 15 131-146 2-16 (26)
90 PF01827 FTH: FTH domain; Int 58.5 45 0.00097 21.2 7.9 120 13-153 15-139 (142)
91 smart00446 LRRcap occurring C- 51.9 13 0.00028 16.8 1.4 16 73-88 7-22 (26)
92 PF07735 FBA_2: F-box associat 46.9 49 0.0011 18.2 5.9 19 15-33 11-29 (70)
93 smart00364 LRR_BAC Leucine-ric 46.3 14 0.0003 16.7 1.0 14 131-145 2-15 (26)
94 PF08004 DUF1699: Protein of u 43.8 52 0.0011 21.2 3.6 40 9-50 11-50 (131)
95 PF08387 FBD: FBD; InterPro: 20.5 1.3E+02 0.0029 15.5 2.4 13 36-48 37-49 (51)
No 1
>KOG4341|consensus
Probab=99.79 E-value=1.1e-19 Score=133.83 Aligned_cols=157 Identities=46% Similarity=0.813 Sum_probs=115.9
Q ss_pred hHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------------
Q psy9589 6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL------------------- 66 (163)
Q Consensus 6 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------------------- 66 (163)
++.++.++|++|++|++..|..+++..++.+++.||+|++|+++.|+.++..|++.+..++
T Consensus 181 s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l 260 (483)
T KOG4341|consen 181 SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL 260 (483)
T ss_pred HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH
Confidence 4567888899999999988888999999999999999999999999888887777776665
Q ss_pred ---------------------CHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHH
Q psy9589 67 ---------------------LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQA 125 (163)
Q Consensus 67 ---------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~ 125 (163)
+++++..++..+..|+.|+.++|..+++..+.++.+++++|+.+-+.+|..+++.++..
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh
Confidence 44445555555666666666666666666666666667777777777776677666666
Q ss_pred HHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 126 LARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 126 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
+.++++.|+.+++..|..+++..+..+..+||.|+.+
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 6666777777777776666666666666677766654
No 2
>KOG4341|consensus
Probab=99.66 E-value=7.2e-17 Score=119.19 Aligned_cols=156 Identities=38% Similarity=0.703 Sum_probs=82.5
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------------CHHHHH
Q psy9589 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------------LDSAVL 72 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------~~~~~~ 72 (163)
+..+...|||+++|.+.+|..++|..+..+.+.|++|++|++..|..+|+..++.++..| ..++++
T Consensus 156 lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 156 LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence 445556677777777777766777777777777777777777776666666666666655 233444
Q ss_pred HHHhcCCCCceEecCCCCC--------------------------CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH
Q psy9589 73 SLAENCPNLYYLCLSGCSQ--------------------------LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126 (163)
Q Consensus 73 ~~~~~~~~L~~L~l~~~~~--------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 126 (163)
.+.+.+..++.+.+.+|.. ++|.++-.+..+|..|+.|+.++|..+++..+.++
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 4444443333333333322 23333333333344444444444444444444444
Q ss_pred HHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 127 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
.+++++|+.|-++.|+..++..+..+.++|+.|+.+
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 445555555555555555555555555555555443
No 3
>KOG1947|consensus
Probab=99.63 E-value=2.7e-15 Score=116.09 Aligned_cols=145 Identities=41% Similarity=0.698 Sum_probs=123.1
Q ss_pred HHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecC-CCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEec
Q psy9589 8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS-CSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCL 86 (163)
Q Consensus 8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 86 (163)
..+...+++|+.|.+..+..+++..+..+...+++|+.|.+++ +..++..+.. ...+...+++|++|++
T Consensus 181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------~~~~~~~~~~L~~l~l 250 (482)
T KOG1947|consen 181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL----------LLLLLSICRKLKSLDL 250 (482)
T ss_pred HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----------hhhhhhhcCCcCccch
Confidence 3455568999999999999999988889999999999999998 3344433311 1224457899999999
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 87 SGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
+++..++|.++..++..||+|+.|.+.+|..++++++..+++.|+.|+.|++++|..+++.++..+...||+++.|
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence 9988899999999998899999999999988999999999999999999999999999898888888889988764
No 4
>KOG2120|consensus
Probab=99.55 E-value=3.3e-14 Score=101.65 Aligned_cols=142 Identities=26% Similarity=0.419 Sum_probs=81.5
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------CHHHHHH
Q psy9589 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------LDSAVLS 73 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------~~~~~~~ 73 (163)
+..+.++|.+|+.|++.+ ..++|.....|++ -.+|+.|++++|..++.-+++.+..+| ..+.+..
T Consensus 202 l~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHHHHHhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence 345667778888888877 4467766666665 567777777777777777777776666 1111222
Q ss_pred HH-hcCCCCceEecCCCC-CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHH
Q psy9589 74 LA-ENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIH 151 (163)
Q Consensus 74 ~~-~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 151 (163)
+. .--++|+.|+++++. .+.+..+..+.++||+|..|++++|..+++..+..+. .++.|++|.++.|..|.++.+.+
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeee
Confidence 11 122455555555542 2333455555556666666666666666654444332 25566666666655555444333
No 5
>KOG1947|consensus
Probab=99.42 E-value=2e-12 Score=100.13 Aligned_cols=123 Identities=42% Similarity=0.753 Sum_probs=100.4
Q ss_pred HHHHHhcCCCCcEEeecC-CCCCCh--HHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCce
Q psy9589 7 VLSLAENCPNLYYLCLSG-CSQLTD--ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYY 83 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~-~~~~~~--~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 83 (163)
+..+...+++|++|+++. +....+ .....+...|++|++|++++|..+++.++..++. .||+|+.
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~------------~c~~L~~ 273 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS------------RCPNLET 273 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh------------hCCCcce
Confidence 456778899999999987 333333 3345577889999999999997788888777766 6899999
Q ss_pred EecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 84 LCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
|.+.+|..+++.++..++++||+|++|++.+|..+++.++..+..+|++|+.|.+..+
T Consensus 274 L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 274 LSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred EccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 9999988899999999999999999999999999999888888777888777655443
No 6
>KOG2120|consensus
Probab=99.41 E-value=1.8e-13 Score=97.94 Aligned_cols=145 Identities=23% Similarity=0.368 Sum_probs=98.4
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------CHHHHHHHHhcCCCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------LDSAVLSLAENCPNL 81 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~L 81 (163)
+.|++|||++ ..++...+..+.+.|.+|+.|.+.|. ...+.....+|++. +.+++.-+.+.|..|
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 5699999988 66899999999999999999999996 67777666666543 344444444555555
Q ss_pred ceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCC-CCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCc
Q psy9589 82 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE 160 (163)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 160 (163)
..|+++.|....+..-..++.--+.|+.|++++|. ++....+..+++.||+|..||+++|-.++++-+.+++ .++.|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQ 341 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchhe
Confidence 55555555444443222333233455555555442 2333345567778999999999999899997777776 777777
Q ss_pred cC
Q psy9589 161 KL 162 (163)
Q Consensus 161 ~L 162 (163)
+|
T Consensus 342 ~l 343 (419)
T KOG2120|consen 342 HL 343 (419)
T ss_pred ee
Confidence 64
No 7
>KOG1909|consensus
Probab=99.39 E-value=5.9e-12 Score=91.59 Aligned_cols=152 Identities=27% Similarity=0.371 Sum_probs=92.4
Q ss_pred HHHHHhcCCCCcEEeecCCCCC--ChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC------------------
Q psy9589 7 VLSLAENCPNLYYLCLSGCSQL--TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL------------------ 66 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------------------ 66 (163)
+......+|.|++|+||+|.+= ....+..+.++|..|++|.+.+| .+...+...++...
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 3444556889999999998642 22555667788999999999988 77766666654422
Q ss_pred ----------CHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHH---HhCCCCCEEEecCCCCCCHHHHHHHHH---cC
Q psy9589 67 ----------LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALAR---NC 130 (163)
Q Consensus 67 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~ 130 (163)
....+...++..|.|+.+.+.. +++...++..++ ++||+|+.|+|.+ +.++..+-..+++ .+
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSW 240 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhccc
Confidence 2333344445566777777766 345444443222 3567777777766 3455544444433 35
Q ss_pred CCCCEEeccCCCCCChHHHH----HHHhCCCCCccC
Q psy9589 131 RLLAKMDLEECVLITDATLI----HLALGCPRLEKL 162 (163)
Q Consensus 131 ~~L~~L~l~~~~~l~~~~~~----~l~~~~~~L~~L 162 (163)
|+|+.|++++| .+..++.. .+.+..|.|+.|
T Consensus 241 ~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl 275 (382)
T KOG1909|consen 241 PHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVL 275 (382)
T ss_pred chheeeccccc-ccccccHHHHHHHHhccCCCCcee
Confidence 66777777777 66654333 333445555543
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=5.3e-11 Score=87.76 Aligned_cols=69 Identities=32% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCCceEecCCCCCCCHHHHHHHH---HhCCCCCEEEecCCCCCCHHHHHHHHHcC----CCCCEEeccCCCCCChHHHH
Q psy9589 79 PNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARNC----RLLAKMDLEECVLITDATLI 150 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~ 150 (163)
++|++|+++++ .+++.+...+. ..+++|+.|++++| .+++.++..+++.+ +.|++|++++| .+++.+..
T Consensus 193 ~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~ 268 (319)
T cd00116 193 CNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAK 268 (319)
T ss_pred CCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHH
Confidence 46666666664 34444433332 24556666666664 35555544444432 56666666666 55544433
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=1.7e-10 Score=85.04 Aligned_cols=72 Identities=28% Similarity=0.271 Sum_probs=43.7
Q ss_pred HhcCCCCceEecCCCCCCCHHHHHHHHHhC----CCCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChH
Q psy9589 75 AENCPNLYYLCLSGCSQLTDASLIVLAQRC----HQLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDA 147 (163)
Q Consensus 75 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~ 147 (163)
...+++|++|+++++ .+++.++..++..+ +.|++|++++| .+++.+...+.+ .+++|+++++++| .++++
T Consensus 217 ~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 217 LASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred hcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 345667777777774 46666666655443 57777777764 465444433332 3456777777776 66665
Q ss_pred HH
Q psy9589 148 TL 149 (163)
Q Consensus 148 ~~ 149 (163)
+.
T Consensus 294 ~~ 295 (319)
T cd00116 294 GA 295 (319)
T ss_pred HH
Confidence 43
No 10
>KOG3207|consensus
Probab=99.28 E-value=1.5e-12 Score=97.20 Aligned_cols=123 Identities=17% Similarity=0.094 Sum_probs=89.2
Q ss_pred HHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCC
Q psy9589 9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSG 88 (163)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 88 (163)
...+.||+++.|+|+.+.+.....+..+++.+|+|+.|+++.|......+-. .-..+++|+.|.+++
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-------------~~~~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-------------TTLLLSHLKQLVLNS 206 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-------------chhhhhhhheEEecc
Confidence 3567899999999999988888999999999999999999998533221100 001457899999999
Q ss_pred CCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH
Q psy9589 89 CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA 147 (163)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 147 (163)
| +++++.+..+...||+|+.|++..+..+.-..-. .+.++.|+.||+++|..++..
T Consensus 207 C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 207 C-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred C-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccc
Confidence 8 6889999999989999999999886433221110 122456777777776544443
No 11
>KOG3665|consensus
Probab=99.15 E-value=4.2e-10 Score=90.65 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=82.1
Q ss_pred HHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChH-HHHHHHhcCCHHHHHHHHhcCCCCceEecCC
Q psy9589 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARGLLDSAVLSLAENCPNLYYLCLSG 88 (163)
Q Consensus 10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 88 (163)
+...+|+|++|.+.+.. +..+.+..+...+|||.+|++|++ .+++- |+. ++++|+.|.+.+
T Consensus 143 ig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS----------------~LknLq~L~mrn 204 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNLSGIS----------------RLKNLQVLSMRN 204 (699)
T ss_pred HhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCcHHHh----------------ccccHHHHhccC
Confidence 44456666666665533 233335555556666666666664 33322 111 345566665555
Q ss_pred CCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHH-HHHHHH---HcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 89 CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALA---RNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
.+.-+...+..++ .+.+|+.||++........ -+.... ..+|.|+.||.|+. .++.+.++.+....|+|+.+
T Consensus 205 Le~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 205 LEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQI 280 (699)
T ss_pred CCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhhh
Confidence 4444445666777 7899999999875444433 222222 23799999999994 99999999998888888754
No 12
>KOG3665|consensus
Probab=99.10 E-value=3.1e-10 Score=91.38 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=96.5
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
-.+|++|++++...+.......+...+|.|++|.+++- .+..+.+ ..+++.+|+|.+||++++ +++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF------------~~lc~sFpNL~sLDIS~T-nI~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDF------------SQLCASFPNLRSLDISGT-NIS 186 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhH------------HHHhhccCccceeecCCC-Ccc
Confidence 36999999999777777788889999999999999984 4444333 344568999999999995 455
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH-HH---HHHHhCCCCCccCC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA-TL---IHLALGCPRLEKLI 163 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~---~~l~~~~~~L~~L~ 163 (163)
+- ..+. ++++|+.|.+.+-+.-+...+..++. +++|+.||+|...+.+.. .+ .+-...+|+|+.||
T Consensus 187 nl--~GIS-~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 187 NL--SGIS-RLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred Cc--HHHh-ccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence 43 3444 78899999998755444456777765 899999999987554443 22 23344688888775
No 13
>KOG3207|consensus
Probab=99.01 E-value=1.9e-10 Score=86.10 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=92.0
Q ss_pred hHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEe
Q psy9589 6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLC 85 (163)
Q Consensus 6 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 85 (163)
.+..-.+.+.+|+++.|.+++ +.+...+..++.||+++.|+++++ -+. .+..+.+|++.+|+|+.|+
T Consensus 112 ki~akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~-----------nw~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFH-----------NWFPVLKIAEQLPSLENLN 178 (505)
T ss_pred HHHHHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHH-----------hHHHHHHHHHhcccchhcc
Confidence 344445678899999998854 677666677888999999999986 332 2467778888999999999
Q ss_pred cCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 86 LSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 86 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
++...-.... -...-..+++|+.|.++.| .++.+.+..++..||+|+.|++.+|.
T Consensus 179 ls~Nrl~~~~-~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 179 LSSNRLSNFI-SSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred cccccccCCc-cccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 9985322111 1111125789999999998 58888888888999999999999983
No 14
>KOG1909|consensus
Probab=98.98 E-value=6.5e-09 Score=76.03 Aligned_cols=135 Identities=25% Similarity=0.323 Sum_probs=82.8
Q ss_pred CCCcEEeecCCCCCCh--HHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 15 PNLYYLCLSGCSQLTD--ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~--~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
|+|+++....|..-+. ..+..+.+.+|.|+.+.++.+ .|...|+..++. -+.+||+|+.|+|.. +.+
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~e---------al~~~~~LevLdl~D-Ntf 225 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAE---------ALEHCPHLEVLDLRD-NTF 225 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHH---------HHHhCCcceeeeccc-chh
Confidence 4555555555443221 222234445566666666554 444444433322 235889999999988 578
Q ss_pred CHHHHHHHHHh---CCCCCEEEecCCCCCCHHHHHHHH----HcCCCCCEEeccCCCCCChHHHHHHHh---CCCCCccC
Q psy9589 93 TDASLIVLAQR---CHQLHTLEVASCSQFTDTGFQALA----RNCRLLAKMDLEECVLITDATLIHLAL---GCPRLEKL 162 (163)
Q Consensus 93 ~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L 162 (163)
+..+-..+++. +|+|+.|++++|. ++.++..++. +..|.|+.|.+.+| .|+.++...++. ..|.|..|
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kL 303 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKL 303 (382)
T ss_pred hhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHh
Confidence 87777777643 5788899999984 6655554443 44789999999998 888776554432 34555544
No 15
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.88 E-value=4.4e-08 Score=69.95 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=98.7
Q ss_pred HHHHHhcCCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCCCCChHHH-------HHHHhcC-----------
Q psy9589 7 VLSLAENCPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCSQFTDTGF-------QALARGL----------- 66 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~-------~~l~~~~----------- 66 (163)
+......||.|+.++|++|.+ -....+..+.++..+|+||.+++| .....+- ..++..-
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 344556799999999999876 334666677778899999999988 4433222 2222221
Q ss_pred ----------CHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHH----HhCCCCCEEEecCCCCCCHHHHHHHH---Hc
Q psy9589 67 ----------LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA----QRCHQLHTLEVASCSQFTDTGFQALA---RN 129 (163)
Q Consensus 67 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~i~~~~~~~l~---~~ 129 (163)
+........+.-.+|+.+.+.+ +++...++..++ .+|.+|+.|++.+ +.+|-.+-..++ ..
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~ 240 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCE 240 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcc
Confidence 2333333333335888888887 578777766553 4789999999988 456655544443 34
Q ss_pred CCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 130 CRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 130 ~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
++.|+.|.+..| .++.++..++++.+
T Consensus 241 W~~lrEL~lnDC-lls~~G~~~v~~~f 266 (388)
T COG5238 241 WNLLRELRLNDC-LLSNEGVKSVLRRF 266 (388)
T ss_pred cchhhhccccch-hhccccHHHHHHHh
Confidence 788999999999 88877777666543
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=6.1e-10 Score=75.34 Aligned_cols=124 Identities=22% Similarity=0.295 Sum_probs=41.9
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
-++++|+|+++. ++. ++.+...+.+|+.|++++| .++. .++. .+++|+.|++++. .++
T Consensus 19 ~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l~----------------~L~~L~~L~L~~N-~I~ 77 (175)
T PF14580_consen 19 VKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNN-QITKLEGLP----------------GLPRLKTLDLSNN-RIS 77 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT--------------------TT--EEE--SS----
T ss_pred cccccccccccc-ccc--ccchhhhhcCCCEEECCCC-CCccccCcc----------------ChhhhhhcccCCC-CCC
Confidence 367888888754 222 2334445778888888887 3332 1211 4678888888873 454
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHH-HHHHHHHcCCCCCEEeccCCCCCCh-HHH-HHHHhCCCCCccCC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARNCRLLAKMDLEECVLITD-ATL-IHLALGCPRLEKLI 163 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~-~~~-~~l~~~~~~L~~L~ 163 (163)
..+ ..+...+|+|++|++++ +.|.+- .+..+ ..+|+|+.|++.+| .+++ ... ..+...+|+|+.||
T Consensus 78 ~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 78 SIS-EGLDKNLPNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ccc-cchHHhCCcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeC
Confidence 431 12333678888888877 455542 23333 45788888888887 4443 222 23445788888775
No 17
>KOG3864|consensus
Probab=98.66 E-value=3.3e-08 Score=67.41 Aligned_cols=83 Identities=20% Similarity=0.379 Sum_probs=66.7
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH--HHHHHh
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT--LIHLAL 154 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~ 154 (163)
.++.++.|.+.+|..+.|..+..+..-.|+|+.|+|++|+.||+.++..+.+ +++|+.|.+.+-+.+..-+ ...+-.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~ 201 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEE 201 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHH
Confidence 6789999999999999999999999778999999999999999999887754 8999999998876665522 223334
Q ss_pred CCCCCc
Q psy9589 155 GCPRLE 160 (163)
Q Consensus 155 ~~~~L~ 160 (163)
.+|+.+
T Consensus 202 aLP~c~ 207 (221)
T KOG3864|consen 202 ALPKCD 207 (221)
T ss_pred hCcccc
Confidence 566654
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=1.6e-08 Score=68.45 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=50.4
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEec
Q psy9589 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCL 86 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 86 (163)
+..+...+.+|+.|++++|...+=.. ...+++|+.|++++| .++..+ +.+.+.+|+|++|.+
T Consensus 34 Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N-~I~~i~-------------~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 34 IENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNN-RISSIS-------------EGLDKNLPNLQELYL 95 (175)
T ss_dssp --S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-C-------------HHHHHH-TT--EEE-
T ss_pred ccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCC-CCCccc-------------cchHHhCCcCCEEEC
Confidence 33444567899999999976432222 245899999999997 555432 112236899999999
Q ss_pred CCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCCHH-HH-HHHHHcCCCCCEEeccCC
Q psy9589 87 SGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDT-GF-QALARNCRLLAKMDLEEC 141 (163)
Q Consensus 87 ~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~-~~l~~~~~~L~~L~l~~~ 141 (163)
++. .+.+ ..+..+. .+|+|+.|++.+++ +++. .. ..+...+|+|+.||-..-
T Consensus 96 ~~N-~I~~l~~l~~L~-~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 96 SNN-KISDLNELEPLS-SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TTS----SCCCCGGGG-G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCC-cCCChHHhHHHH-cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 985 4543 3345555 79999999999965 4432 22 233456899999987653
No 19
>KOG3864|consensus
Probab=98.54 E-value=7.1e-08 Score=65.83 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=69.2
Q ss_pred CCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCC
Q psy9589 80 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRL 159 (163)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 159 (163)
.++.++.+++ .+...++..+. +++.|+.|.+.+|..+.+.+++.+..-.++|+.|+++.|+.||+.++..+. .+++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 4778888884 68888888888 899999999999999999999999887899999999999999999887775 66666
Q ss_pred ccC
Q psy9589 160 EKL 162 (163)
Q Consensus 160 ~~L 162 (163)
+.|
T Consensus 179 r~L 181 (221)
T KOG3864|consen 179 RRL 181 (221)
T ss_pred HHH
Confidence 654
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.52 E-value=1.4e-07 Score=79.40 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=63.8
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChH-HHHHHHhcC----CH----HHHHHHHhcCCCCc
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARGL----LD----SAVLSLAENCPNLY 82 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~----~~----~~~~~~~~~~~~L~ 82 (163)
..+++|+.|++++|.. +...-..+...+++|++|++++|. ++.. ....+.... .. ..+......+++|+
T Consensus 90 ~~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNN-FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCc-cccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 3577888888877653 221112234456777777777763 2210 000000000 00 00111123455666
Q ss_pred eEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 83 YLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
+|+++++. +.......+. .+++|++|++++|. ++...... ...+++|+.|++++| .++...... +..+++|++|
T Consensus 168 ~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L 241 (968)
T PLN00113 168 VLDLGGNV-LVGKIPNSLT-NLTSLEFLTLASNQ-LVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHL 241 (968)
T ss_pred EEECccCc-ccccCChhhh-hCcCCCeeeccCCC-CcCcCChH-HcCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEE
Confidence 66665532 2222222232 55666666666542 33211112 234566777777766 444321122 2355666654
No 21
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.51 E-value=1.4e-07 Score=79.35 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=54.9
Q ss_pred hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhC
Q psy9589 76 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALG 155 (163)
Q Consensus 76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 155 (163)
..+++|++|+++++. +.......+. .+++|+.|+++++ .++......+ ..+++|++|++++| .++... ...+..
T Consensus 185 ~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~-p~~l~~ 258 (968)
T PLN00113 185 TNLTSLEFLTLASNQ-LVGQIPRELG-QMKSLKWIYLGYN-NLSGEIPYEI-GGLTSLNHLDLVYN-NLTGPI-PSSLGN 258 (968)
T ss_pred hhCcCCCeeeccCCC-CcCcCChHHc-CcCCccEEECcCC-ccCCcCChhH-hcCCCCCEEECcCc-eecccc-ChhHhC
Confidence 367899999999864 4433334444 7899999999985 4554322233 45899999999998 555432 223457
Q ss_pred CCCCccC
Q psy9589 156 CPRLEKL 162 (163)
Q Consensus 156 ~~~L~~L 162 (163)
+++|+.|
T Consensus 259 l~~L~~L 265 (968)
T PLN00113 259 LKNLQYL 265 (968)
T ss_pred CCCCCEE
Confidence 7778765
No 22
>KOG2982|consensus
Probab=98.44 E-value=8.3e-08 Score=69.38 Aligned_cols=98 Identities=16% Similarity=0.083 Sum_probs=71.2
Q ss_pred hHHhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCc
Q psy9589 3 IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLY 82 (163)
Q Consensus 3 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 82 (163)
.-..+..+.+.++.+++++|.+|...++..+-.|.+++|.|+.|+++.|.--++.+-.. -...+|+
T Consensus 59 ~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--------------~p~~nl~ 124 (418)
T KOG2982|consen 59 NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--------------LPLKNLR 124 (418)
T ss_pred cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--------------ccccceE
Confidence 33445667778889999999887766667777888999999999998774333322110 1345888
Q ss_pred eEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589 83 YLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115 (163)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 115 (163)
.|-+.+ .++++.........+|.++.|+++.+
T Consensus 125 ~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 888888 57888888777777888888877764
No 23
>KOG2982|consensus
Probab=98.26 E-value=1e-06 Score=63.89 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=88.4
Q ss_pred HHhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------CHHHHHHHH
Q psy9589 4 FITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------LDSAVLSLA 75 (163)
Q Consensus 4 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------~~~~~~~~~ 75 (163)
|..++.+.+++|.|+.|++++|.-.++..- +--...+|+.|.+.|. ..+......+.... +++++..+.
T Consensus 86 WseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n 162 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLN 162 (418)
T ss_pred HHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhc
Confidence 567788999999999999999764444222 2122568899999884 55554444443322 111111110
Q ss_pred -------hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH
Q psy9589 76 -------ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT 148 (163)
Q Consensus 76 -------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 148 (163)
+--|.++.|....|....+.....+.+.+|++.++.+..|+ ++......-.+.+|.+.-|.++.+ +|.+++
T Consensus 163 ~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswa 240 (418)
T KOG2982|consen 163 LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWA 240 (418)
T ss_pred cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHH
Confidence 01134556666666555556666777778888888888765 443333333345666777777775 666544
Q ss_pred HHHHHhCCCCCc
Q psy9589 149 LIHLALGCPRLE 160 (163)
Q Consensus 149 ~~~l~~~~~~L~ 160 (163)
...-...+|+|.
T Consensus 241 svD~Ln~f~~l~ 252 (418)
T KOG2982|consen 241 SVDALNGFPQLV 252 (418)
T ss_pred HHHHHcCCchhh
Confidence 322223555543
No 24
>KOG4194|consensus
Probab=98.18 E-value=2.1e-07 Score=72.75 Aligned_cols=124 Identities=18% Similarity=0.134 Sum_probs=75.5
Q ss_pred HhcCCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCC--CCChHHHHHHHhcC----CHHHHHH----HHhcC
Q psy9589 11 AENCPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCS--QFTDTGFQALARGL----LDSAVLS----LAENC 78 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~----~~~~~~~----~~~~~ 78 (163)
...+..|+.|+++.|.. +.-+.+ +.|+.|+.|+++.|. .+....+..+.... ..+.+.+ .+..+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~W----sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSW----SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred ccccchhhhhccchhhhheeecchh----hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 34567788888877542 223333 347788888887762 22344444443322 2222222 34567
Q ss_pred CCCceEecCCCCCCCH--HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 79 PNLYYLCLSGCSQLTD--ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+|+.|+|... .+++ ++....+.++|.|+.|.+.+ +.++.-.-.++ .+++.|+.||+.+|
T Consensus 365 ssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 365 SSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDN 426 (873)
T ss_pred hhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCC
Confidence 88999999884 4443 12333444799999999988 45665443333 56899999999997
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.01 E-value=7e-06 Score=70.52 Aligned_cols=39 Identities=31% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQF 54 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~ 54 (163)
+++|++|++++|..+.... .-...+++|+.|++++|..+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred cccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCc
Confidence 4567777777765433321 12345777788888777543
No 26
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.90 E-value=1.7e-05 Score=36.36 Aligned_cols=24 Identities=46% Similarity=0.937 Sum_probs=13.2
Q ss_pred CCcCCEEEecCCCCCChHHHHHHH
Q psy9589 40 CHQLHTLEVASCSQFTDTGFQALA 63 (163)
Q Consensus 40 ~~~L~~L~l~~~~~~~~~~~~~l~ 63 (163)
||+|++|++++|..+++.|+..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 455555555555555555555544
No 27
>KOG2123|consensus
Probab=97.89 E-value=5.2e-06 Score=59.78 Aligned_cols=61 Identities=28% Similarity=0.301 Sum_probs=26.2
Q ss_pred hcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 76 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
..+|.|+.|.|+-. .++ .+..+. +|+.|++|+|.. +.|.+-......+++|+|+.|.+..|
T Consensus 38 ~kMp~lEVLsLSvN-kIs--sL~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVN-KIS--SLAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeecc-ccc--cchhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccC
Confidence 34555555555442 222 122222 455555555554 23443322233344555555555443
No 28
>KOG0618|consensus
Probab=97.88 E-value=1.9e-06 Score=70.45 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.5
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCC
Q psy9589 103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVL 143 (163)
Q Consensus 103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 143 (163)
.+++|+.+|++. ++++...+..... .|+|++||+++|+.
T Consensus 450 ~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 450 QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence 678999999976 6787755544332 48999999999863
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=2.4e-05 Score=67.31 Aligned_cols=110 Identities=18% Similarity=0.340 Sum_probs=69.9
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
...+++|+.|++++|..+..-.-. + .+++|+.|++++|..+..- ....++|+.|+++++
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~-~--~L~sL~~L~Ls~c~~L~~~-----------------p~~~~nL~~L~Ls~n- 856 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTG-I--NLESLESLDLSGCSRLRTF-----------------PDISTNISDLNLSRT- 856 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCC-C--CccccCEEECCCCCccccc-----------------cccccccCEeECCCC-
Confidence 346899999999998765432111 1 4789999999999654321 012357888888774
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
.+... ...+ ..+++|+.|++.+|++++.-.. ....++.|+.+++++|..++
T Consensus 857 ~i~~i-P~si-~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 857 GIEEV-PWWI-EKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCccC-hHHH-hcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 34421 1122 3678888888888877664221 22346778888888876654
No 30
>KOG4194|consensus
Probab=97.84 E-value=4.7e-06 Score=65.48 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=31.2
Q ss_pred CCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 80 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
++++|+|++ +.+++.+...+. .+.+|-.|.|++ +.++.-....+ +++|+|+.|++..|
T Consensus 174 ni~~L~La~-N~It~l~~~~F~-~lnsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 174 NIKKLNLAS-NRITTLETGHFD-SLNSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRN 231 (873)
T ss_pred CceEEeecc-cccccccccccc-ccchheeeeccc-CcccccCHHHh-hhcchhhhhhcccc
Confidence 566666665 345554444444 445566666655 34554443322 44666777766665
No 31
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.79 E-value=3.9e-05 Score=35.07 Aligned_cols=24 Identities=46% Similarity=0.686 Sum_probs=12.7
Q ss_pred CCCCCEEeccCCCCCChHHHHHHH
Q psy9589 130 CRLLAKMDLEECVLITDATLIHLA 153 (163)
Q Consensus 130 ~~~L~~L~l~~~~~l~~~~~~~l~ 153 (163)
||+|++|++++|+.|++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345555555555555555555443
No 32
>KOG0618|consensus
Probab=97.74 E-value=1.2e-05 Score=66.06 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=62.6
Q ss_pred HHHhcCCCCcEEeecCCC--CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC---------CHHHHHHHHhc
Q psy9589 9 SLAENCPNLYYLCLSGCS--QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL---------LDSAVLSLAEN 77 (163)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~--~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~ 77 (163)
.....+++|+.|+|++|. .+.+..+ ..++.|++|++||| ..+.-.-......+ -...+..+ ..
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~-~~ 450 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPEL-AQ 450 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhh-hh
Confidence 344567778888887753 2333222 34677788888876 33322211111000 01111222 25
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.|.|+.+|++. +.++...+.+.. -.|+|++|+++++.... -..+.+ +.++.+..+++.-+
T Consensus 451 l~qL~~lDlS~-N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~-~d~~~l-~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 451 LPQLKVLDLSC-NNLSEVTLPEAL-PSPNLKYLDLSGNTRLV-FDHKTL-KVLKSLSQMDITLN 510 (1081)
T ss_pred cCcceEEeccc-chhhhhhhhhhC-CCcccceeeccCCcccc-cchhhh-HHhhhhhheecccC
Confidence 67888888877 456655554433 23788888888865311 111112 22455555555543
No 33
>KOG1259|consensus
Probab=97.70 E-value=2.8e-05 Score=56.82 Aligned_cols=103 Identities=24% Similarity=0.274 Sum_probs=52.2
Q ss_pred CCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH
Q psy9589 16 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA 95 (163)
Q Consensus 16 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 95 (163)
.|++|++++|. ++. +..-.+..|.++.|+++.| .+...+- + +.+++|++|++++. .++.
T Consensus 285 ~LtelDLS~N~-I~~--iDESvKL~Pkir~L~lS~N-~i~~v~n--L-------------a~L~~L~~LDLS~N-~Ls~- 343 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQ--IDESVKLAPKLRRLILSQN-RIRTVQN--L-------------AELPQLQLLDLSGN-LLAE- 343 (490)
T ss_pred hhhhccccccc-hhh--hhhhhhhccceeEEecccc-ceeeehh--h-------------hhcccceEeecccc-hhHh-
Confidence 45667777743 222 1122244677888888776 3332211 1 14577777777773 2322
Q ss_pred HHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 96 SLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 96 ~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
+..+-..+.+++.|.++.+ .+.+ +..+ ..+.+|.+||+++| +|.
T Consensus 344 -~~Gwh~KLGNIKtL~La~N-~iE~--LSGL-~KLYSLvnLDl~~N-~Ie 387 (490)
T KOG1259|consen 344 -CVGWHLKLGNIKTLKLAQN-KIET--LSGL-RKLYSLVNLDLSSN-QIE 387 (490)
T ss_pred -hhhhHhhhcCEeeeehhhh-hHhh--hhhh-Hhhhhheecccccc-chh
Confidence 1222224567777766652 2221 1111 22456666677665 443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.67 E-value=2.5e-06 Score=47.60 Aligned_cols=59 Identities=27% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
|+|++|+++++ .++......+ .++++|++|+++++ .++.-.. ....++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence 45666666664 3433222222 26777777777763 4553222 22355677777777776
No 35
>KOG2739|consensus
Probab=97.52 E-value=2.9e-05 Score=55.14 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=42.6
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH-HHHHHHHHcCCCCCEEeccCCCC--CChHHHHHHH
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARNCRLLAKMDLEECVL--ITDATLIHLA 153 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~--l~~~~~~~l~ 153 (163)
.+|+|+.|.++........++..++..+|+|+++.+++ +.+++ ..+.-+ +..++|..|++..|.. +++. -..++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dy-re~vf 139 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDY-REKVF 139 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchh-hhhcchhhhhcccCCccccccH-HHHHH
Confidence 45566677666543333344555555567777777766 34543 112222 2245666666666622 2121 23444
Q ss_pred hCCCCCccCC
Q psy9589 154 LGCPRLEKLI 163 (163)
Q Consensus 154 ~~~~~L~~L~ 163 (163)
.-+|+|+.||
T Consensus 140 ~ll~~L~~LD 149 (260)
T KOG2739|consen 140 LLLPSLKYLD 149 (260)
T ss_pred HHhhhhcccc
Confidence 5556665554
No 36
>KOG2739|consensus
Probab=97.50 E-value=5.5e-05 Score=53.76 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=19.7
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+|+|++|.++.+..-....+..++..+|+|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 345555555555432233344444455566666666554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.45 E-value=7.7e-06 Score=45.62 Aligned_cols=37 Identities=30% Similarity=0.251 Sum_probs=17.3
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 115 (163)
.+++|++|+++++ .+....... +.++++|++|++++|
T Consensus 23 ~l~~L~~L~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNN-NLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSS-SESEEETTT-TTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCC-ccCccCHHH-HcCCCCCCEEeCcCC
Confidence 3455555555543 233221112 225566666666553
No 38
>KOG4237|consensus
Probab=97.42 E-value=7.7e-05 Score=56.19 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=24.2
Q ss_pred hcCCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCCCCCh
Q psy9589 12 ENCPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCSQFTD 56 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~~~~~ 56 (163)
..+++|++|+|++|.. +....+ ++++.+..|.+-++.+|++
T Consensus 88 ~~l~~LRrLdLS~N~Is~I~p~AF----~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISFIAPDAF----KGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cchhhhceecccccchhhcChHhh----hhhHhhhHHHhhcCCchhh
Confidence 4578899999988642 333333 4455565666655444443
No 39
>KOG1859|consensus
Probab=97.41 E-value=3e-05 Score=62.57 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=23.3
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 115 (163)
-.|.|++|+|+.+ .+.+.. .+. .|++|+.|+|+.+
T Consensus 185 ll~ale~LnLshN-k~~~v~--~Lr-~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKVD--NLR-RLPKLKHLDLSYN 219 (1096)
T ss_pred HHHHhhhhccchh-hhhhhH--HHH-hcccccccccccc
Confidence 3467888888884 454433 333 7888888888763
No 40
>KOG1259|consensus
Probab=97.24 E-value=0.00032 Score=51.42 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=68.0
Q ss_pred HHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCC
Q psy9589 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGC 89 (163)
Q Consensus 10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 89 (163)
-.+-.|+++.|+++.|....-.. ...+++|++|++++|. .+. +..+...+-+++.|.+++.
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~-Ls~--------------~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNL-LAE--------------CVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccceeEEeccccceeeehh----hhhcccceEeecccch-hHh--------------hhhhHhhhcCEeeeehhhh
Confidence 34567999999999976433333 3558999999999973 221 1223335678888888774
Q ss_pred CCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 90 SQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 90 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
.+ ..++.+. .+-+|..|+++++ .|..-....-..++|.|+.+.+.+|+
T Consensus 363 -~i--E~LSGL~-KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 363 -KI--ETLSGLR-KLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -hH--hhhhhhH-hhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 22 2233333 4567888888873 45432211112347888888888873
No 41
>PLN03150 hypothetical protein; Provisional
Probab=97.22 E-value=0.00085 Score=54.44 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=30.6
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|+.|+++++ .++......+. .+++|+.|+++++ .++...-..+.....++..+++.+|
T Consensus 464 ~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 464 SITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEECcCC-cccccCChHHhhccccCceEEecCC
Confidence 4566777777664 34433333333 5667777777664 3432221222222234455555554
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=0.0051 Score=44.69 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=46.3
Q ss_pred hcCCCCceEecCCCCCCCHHHHHHHHH---hCCCCCEEEecCCCCCCHHHHHHHHHc-----CCCCCEEeccCC
Q psy9589 76 ENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARN-----CRLLAKMDLEEC 141 (163)
Q Consensus 76 ~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~ 141 (163)
..+++|+.|++.. +.++-.+-..++. .++.|+.|.+++|- ++..+.....+. .|+|..|...++
T Consensus 211 ~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 211 FYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchh
Confidence 3678999999988 5787777766654 35778999999984 555554444332 588998888886
No 43
>KOG0444|consensus
Probab=97.06 E-value=0.00023 Score=57.00 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=25.1
Q ss_pred HhCCcCCEEEecCCC--CCChHHHHHHHhcC----C---HHHHHHHHhcCCCCceEecCCC
Q psy9589 38 QRCHQLHTLEVASCS--QFTDTGFQALARGL----L---DSAVLSLAENCPNLYYLCLSGC 89 (163)
Q Consensus 38 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~----~---~~~~~~~~~~~~~L~~L~l~~~ 89 (163)
.+-+++-.|++|+|. .|++.-+-.+.... + -+.+..-.+++.+|++|+|++.
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 345667778887762 23333332222211 1 1222222345667777777774
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.04 E-value=0.00086 Score=34.74 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 105 HQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 105 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
++|++|+++++ .+++-+ ....++++|+.|++++| .++
T Consensus 1 ~~L~~L~l~~N-~i~~l~--~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLP--PELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSHG--GHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCC-CCcccC--chHhCCCCCCEEEecCC-CCC
Confidence 46677777663 455422 21245677777777776 554
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.83 E-value=0.0021 Score=33.25 Aligned_cols=37 Identities=30% Similarity=0.253 Sum_probs=23.3
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT 55 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~ 55 (163)
++|++|++++|. +++ +......+++|+.|++++| .++
T Consensus 1 ~~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCC-CCC
Confidence 578888888865 444 2222356888888888887 444
No 46
>KOG1644|consensus
Probab=96.83 E-value=0.00049 Score=47.50 Aligned_cols=87 Identities=23% Similarity=0.260 Sum_probs=45.1
Q ss_pred HhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589 38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ 117 (163)
Q Consensus 38 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 117 (163)
.++++|..|.+..| +|+..+ ..+...+|+|+.|.+.+.+-..-.++..++ .||.|++|.+-+++
T Consensus 61 p~l~rL~tLll~nN-rIt~I~-------------p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Np- 124 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRID-------------PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNP- 124 (233)
T ss_pred CCccccceEEecCC-cceeec-------------cchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCc-
Confidence 45666777777665 444321 111123466777777664323333445555 67777777776643
Q ss_pred CCHHH-HHH-HHHcCCCCCEEeccC
Q psy9589 118 FTDTG-FQA-LARNCRLLAKMDLEE 140 (163)
Q Consensus 118 i~~~~-~~~-l~~~~~~L~~L~l~~ 140 (163)
++.+. ... +...+|+|+.||+..
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhh
Confidence 33321 111 122356777777654
No 47
>PLN03150 hypothetical protein; Provisional
Probab=96.80 E-value=0.0019 Score=52.45 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=46.1
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
.+++|+.|+|+++ .+.......+. .+++|+.|+++++ .++...-. ...++++|+.|++++| .++
T Consensus 440 ~L~~L~~L~Ls~N-~l~g~iP~~~~-~l~~L~~LdLs~N-~lsg~iP~-~l~~L~~L~~L~Ls~N-~l~ 503 (623)
T PLN03150 440 KLRHLQSINLSGN-SIRGNIPPSLG-SITSLEVLDLSYN-SFNGSIPE-SLGQLTSLRILNLNGN-SLS 503 (623)
T ss_pred CCCCCCEEECCCC-cccCcCChHHh-CCCCCCEEECCCC-CCCCCCch-HHhcCCCCCEEECcCC-ccc
Confidence 6789999999985 45433333344 7999999999985 56643322 3346899999999998 555
No 48
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.77 E-value=0.0011 Score=29.46 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=9.2
Q ss_pred CcCCEEEecCCCCCChHHHHHH
Q psy9589 41 HQLHTLEVASCSQFTDTGFQAL 62 (163)
Q Consensus 41 ~~L~~L~l~~~~~~~~~~~~~l 62 (163)
++|++|+|++| .+++.|+..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 44555555554 3555444444
No 49
>KOG2123|consensus
Probab=96.53 E-value=0.0013 Score=47.79 Aligned_cols=113 Identities=23% Similarity=0.291 Sum_probs=65.8
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
+.+.++|++++|. ++|.. |....|.|++|.|+-| .|+.-. -+.+|.+|+.|.|... .+.
T Consensus 18 l~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvN-kIssL~---------------pl~rCtrLkElYLRkN-~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVN-KISSLA---------------PLQRCTRLKELYLRKN-CIE 76 (388)
T ss_pred HHHhhhhcccCCC-ccHHH---HHHhcccceeEEeecc-ccccch---------------hHHHHHHHHHHHHHhc-ccc
Confidence 4578889998865 66644 4567899999999886 443211 1126777777777663 344
Q ss_pred HH-HHHHHHHhCCCCCEEEecCCCCCCHHH--H-HHHHHcCCCCCEEeccCCCCCChHHHHH
Q psy9589 94 DA-SLIVLAQRCHQLHTLEVASCSQFTDTG--F-QALARNCRLLAKMDLEECVLITDATLIH 151 (163)
Q Consensus 94 ~~-~~~~l~~~~~~L~~L~l~~~~~i~~~~--~-~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 151 (163)
+. .+..+ +++|+|+.|-|..++-....+ . ....+.+|+|+-||= ..++.+.+.+
T Consensus 77 sldEL~YL-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~ 134 (388)
T KOG2123|consen 77 SLDELEYL-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEE 134 (388)
T ss_pred cHHHHHHH-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHH
Confidence 33 23333 377777777776544332222 1 122345677776652 3455544443
No 50
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.50 E-value=0.0025 Score=28.25 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=9.6
Q ss_pred CCCCEEeccCCCCCChHHHHHH
Q psy9589 131 RLLAKMDLEECVLITDATLIHL 152 (163)
Q Consensus 131 ~~L~~L~l~~~~~l~~~~~~~l 152 (163)
++|+.|++++| .++++++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 44555555555 4555554443
No 51
>KOG1859|consensus
Probab=96.36 E-value=0.00041 Score=56.30 Aligned_cols=82 Identities=24% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCC
Q psy9589 36 LAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115 (163)
Q Consensus 36 i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 115 (163)
-.+.+|.|++|+++.| .++... ..+.|+.|++|||+++ .+....-.... +|. |..|.|+++
T Consensus 182 SLqll~ale~LnLshN-k~~~v~---------------~Lr~l~~LkhLDlsyN-~L~~vp~l~~~-gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVD---------------NLRRLPKLKHLDLSYN-CLRHVPQLSMV-GCK-LQLLNLRNN 242 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhH---------------HHHhcccccccccccc-hhccccccchh-hhh-heeeeeccc
Confidence 3344566677777665 333221 1235667777777663 22211111111 233 666666552
Q ss_pred CCCCH-HHHHHHHHcCCCCCEEeccCC
Q psy9589 116 SQFTD-TGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 116 ~~i~~-~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.++. -++ +++.+|+.||+++|
T Consensus 243 -~l~tL~gi----e~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 243 -ALTTLRGI----ENLKSLYGLDLSYN 264 (1096)
T ss_pred -HHHhhhhH----HhhhhhhccchhHh
Confidence 2221 122 22455666666665
No 52
>KOG4308|consensus
Probab=96.35 E-value=0.0027 Score=49.86 Aligned_cols=129 Identities=26% Similarity=0.348 Sum_probs=71.6
Q ss_pred HHhcCCCCcEEeecCCCCCChHHHHHHHH-------hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCC-C
Q psy9589 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQ-------RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPN-L 81 (163)
Q Consensus 10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-L 81 (163)
.....+.++.++++.|... +.+...+.+ ...+++.|++.+| .++......+.. ..+..+. +
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~---------~l~~~~~~~ 235 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDE---------VLASGESLL 235 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHH---------HHhccchhh
Confidence 3344777777777776654 333322222 2445777888777 555443333221 1223333 5
Q ss_pred ceEecCCCCCCCHHHHHHHHHhCC----CCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHHHHHH
Q psy9589 82 YYLCLSGCSQLTDASLIVLAQRCH----QLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDATLIHL 152 (163)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l 152 (163)
..|++.. +.+.|.++..+...++ .++.++++.| .+++.+...+.+ .+++++.+.++.+ .+.+.+...+
T Consensus 236 ~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~ 310 (478)
T KOG4308|consen 236 RELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELL 310 (478)
T ss_pred HHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHH
Confidence 5577766 4566666666665443 4477777774 466555444433 3667777777776 5555544433
No 53
>KOG3763|consensus
Probab=96.32 E-value=0.01 Score=46.81 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCC--CCCCHHHHHHHHHhCCCCCEEE
Q psy9589 34 IVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGC--SQLTDASLIVLAQRCHQLHTLE 111 (163)
Q Consensus 34 ~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~ 111 (163)
+++....|.+..+++++|..-.-+++..+++ ..|+|+.|+|++. ...++..+..+. ...|++|-
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq------------~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~ 276 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQ------------IAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELV 276 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHH------------hcchhheeecccchhhhcchhhhhhhc--CCCHHHee
Confidence 3444556677777777664444444444443 5677777777764 112222222222 45577777
Q ss_pred ecCCCCCC---H--HHHHHHHHcCCCCCEEe
Q psy9589 112 VASCSQFT---D--TGFQALARNCRLLAKMD 137 (163)
Q Consensus 112 l~~~~~i~---~--~~~~~l~~~~~~L~~L~ 137 (163)
+.+++-.+ + +.+.++.+.+|+|..||
T Consensus 277 l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 277 LEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 76644222 1 12344445567666664
No 54
>KOG0444|consensus
Probab=96.18 E-value=0.00057 Score=54.89 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=28.6
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
+|+.|+.|.++.+.-||-.....+ ++.|+.||+..|+++-
T Consensus 337 RC~kL~kL~L~~NrLiTLPeaIHl---L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITLPEAIHL---LPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhHHHHHhcccccceeechhhhhh---cCCcceeeccCCcCcc
Confidence 688888888887666664332333 5789999999887654
No 55
>KOG3763|consensus
Probab=95.99 E-value=0.015 Score=45.84 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCC-CCCHH-HHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-QFTDT-GFQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
..+..+-...|.+.++.+++..-..-+.+..+.+..|+|+.|+|+++. .+..+ .+..+ ...-|++|.+.+|+-.+.
T Consensus 208 ~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 208 AVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTT 285 (585)
T ss_pred HHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccc
Confidence 334555568899999999997656667888899899999999999852 33332 22222 256799999999854432
Q ss_pred -----HHHHHHHhCCCCCccCC
Q psy9589 147 -----ATLIHLALGCPRLEKLI 163 (163)
Q Consensus 147 -----~~~~~l~~~~~~L~~L~ 163 (163)
+-+.++.+.+|+|..||
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhhHHHHHHHHHhcchheeec
Confidence 34567788999998876
No 56
>KOG1644|consensus
Probab=95.86 E-value=0.0041 Score=43.07 Aligned_cols=89 Identities=24% Similarity=0.245 Sum_probs=58.2
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
..+++.|..|.+.+|.. +... ..+...+|+|+.|.+.+|.-..-..+..+ ..||.|++|.+-+.+
T Consensus 60 lp~l~rL~tLll~nNrI-t~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-------------a~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRI-TRID-PDLDTFLPNLKTLILTNNSIQELGDLDPL-------------ASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCcc-eeec-cchhhhccccceEEecCcchhhhhhcchh-------------ccCCccceeeecCCc
Confidence 35789999999988653 3311 13556789999999999732211112222 268999999998843
Q ss_pred CCCHHHHH--HHHHhCCCCCEEEecCC
Q psy9589 91 QLTDASLI--VLAQRCHQLHTLEVASC 115 (163)
Q Consensus 91 ~~~~~~~~--~l~~~~~~L~~L~l~~~ 115 (163)
+....-. .+...+|+|+.|++.+.
T Consensus 125 -v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 125 -VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred -hhcccCceeEEEEecCcceEeehhhh
Confidence 4443222 33456899999999763
No 57
>KOG4308|consensus
Probab=95.73 E-value=0.0099 Score=46.77 Aligned_cols=149 Identities=31% Similarity=0.418 Sum_probs=70.6
Q ss_pred HHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCc----CCEEEecCCCCCChHHHHHHHhcC----------------C
Q psy9589 8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQ----LHTLEVASCSQFTDTGFQALARGL----------------L 67 (163)
Q Consensus 8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~----L~~L~l~~~~~~~~~~~~~l~~~~----------------~ 67 (163)
.......+.|..|+++++. +.+.....+....+. ++.|.+..| .++..|...++... .
T Consensus 108 ~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 3344455666666666644 345555555543332 455555554 44444444443322 0
Q ss_pred HHHHHHHH---h----cCCCCceEecCCCCCCCHHHHHHHHHh---CCC-CCEEEecCCCCCCHHHHHHHHHcC----CC
Q psy9589 68 DSAVLSLA---E----NCPNLYYLCLSGCSQLTDASLIVLAQR---CHQ-LHTLEVASCSQFTDTGFQALARNC----RL 132 (163)
Q Consensus 68 ~~~~~~~~---~----~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~-L~~L~l~~~~~i~~~~~~~l~~~~----~~ 132 (163)
..+...+. + ...++++|++.+| .++......+..- .+. +..+++.. +.+.+.++..+.+.+ +.
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~ 263 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSET 263 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchh
Confidence 11111111 1 2235666666665 3444443333322 233 44466654 456666655555443 35
Q ss_pred CCEEeccCCCCCChHHHH---HHHhCCCCCcc
Q psy9589 133 LAKMDLEECVLITDATLI---HLALGCPRLEK 161 (163)
Q Consensus 133 L~~L~l~~~~~l~~~~~~---~l~~~~~~L~~ 161 (163)
++.++++.| .+++.+.. +....|++++.
T Consensus 264 l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~ 294 (478)
T KOG4308|consen 264 LRVLDLSRN-SITEKGVRDLAEVLVSCRQLEE 294 (478)
T ss_pred hhhhhhhcC-CccccchHHHHHHHhhhHHHHH
Confidence 577788877 55554433 33334444443
No 58
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.43 E-value=0.016 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=15.9
Q ss_pred cCCCCCEEeccCCCCCChHHHHHH
Q psy9589 129 NCRLLAKMDLEECVLITDATLIHL 152 (163)
Q Consensus 129 ~~~~L~~L~l~~~~~l~~~~~~~l 152 (163)
.++.|+.|++++| .++......+
T Consensus 443 ~L~~L~~LdLs~N-~Ls~~~~~~L 465 (788)
T PRK15387 443 HLSSETTVNLEGN-PLSERTLQAL 465 (788)
T ss_pred hccCCCeEECCCC-CCCchHHHHH
Confidence 4678888888887 6776544433
No 59
>KOG4579|consensus
Probab=95.42 E-value=0.0046 Score=40.42 Aligned_cols=114 Identities=20% Similarity=0.305 Sum_probs=64.9
Q ss_pred HHHHhcC---CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceE
Q psy9589 8 LSLAENC---PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYL 84 (163)
Q Consensus 8 ~~~~~~~---~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 84 (163)
...+++| ..+..++|+.|..---............|+..++++| +++.+. .++-..+|.++.|
T Consensus 17 ~evVercedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N------~fk~fp--------~kft~kf~t~t~l 82 (177)
T KOG4579|consen 17 NEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN------GFKKFP--------KKFTIKFPTATTL 82 (177)
T ss_pred HHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccc------hhhhCC--------HHHhhccchhhhh
Confidence 3444445 4667778877753211222222334667888888886 222111 1233367788999
Q ss_pred ecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 85 CLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
++.+ +.+++.... ++ .+|.|++|+++.++ +.... ..++. +.++-.|+.-.+
T Consensus 83 Nl~~-neisdvPeE-~A-am~aLr~lNl~~N~-l~~~p-~vi~~-L~~l~~Lds~~n 133 (177)
T KOG4579|consen 83 NLAN-NEISDVPEE-LA-AMPALRSLNLRFNP-LNAEP-RVIAP-LIKLDMLDSPEN 133 (177)
T ss_pred hcch-hhhhhchHH-Hh-hhHHhhhcccccCc-cccch-HHHHH-HHhHHHhcCCCC
Confidence 9988 456665444 55 78999999998854 33222 22333 445566666554
No 60
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.40 E-value=0.039 Score=46.00 Aligned_cols=34 Identities=32% Similarity=0.324 Sum_probs=19.3
Q ss_pred CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589 79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT 119 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~ 119 (163)
+.|+.|+++++ .++. +....++|+.|+++++ .++
T Consensus 282 ~~L~~L~Ls~N-~Lt~-----LP~~p~~L~~LdLS~N-~L~ 315 (788)
T PRK15387 282 SGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDN-QLA 315 (788)
T ss_pred hhcCEEECcCC-cccc-----ccccccccceeECCCC-ccc
Confidence 35666666663 2331 1223467888888774 344
No 61
>KOG0472|consensus
Probab=95.39 E-value=0.014 Score=44.64 Aligned_cols=41 Identities=22% Similarity=0.092 Sum_probs=28.5
Q ss_pred HHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.....++++|..|++++|. +.+-..+-. ....|+.|+++.+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~--~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNL-LNDLPEEMG--SLVRLQTLNLSFN 468 (565)
T ss_pred hHHHHhhhcceeeecccch-hhhcchhhh--hhhhhheeccccc
Confidence 3456788999999998854 566554422 2455899999887
No 62
>KOG4658|consensus
Probab=95.35 E-value=0.018 Score=48.71 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=6.8
Q ss_pred hCCCCCEEEecC
Q psy9589 103 RCHQLHTLEVAS 114 (163)
Q Consensus 103 ~~~~L~~L~l~~ 114 (163)
.+++|++|.+-.
T Consensus 640 ~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 640 ELQSLRVLRLPR 651 (889)
T ss_pred hcccccEEEeec
Confidence 455666666644
No 63
>KOG4658|consensus
Probab=95.15 E-value=0.043 Score=46.48 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=59.6
Q ss_pred hcCCCCcEEeecCCCC-CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~-~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
..+|+|++|-+..+.. +.... ..+....|.|+.|++++|.....- +.....+-+|++|++++.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~L--------------P~~I~~Li~LryL~L~~t- 605 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKL--------------PSSIGELVHLRYLDLSDT- 605 (889)
T ss_pred CCCCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcC--------------ChHHhhhhhhhcccccCC-
Confidence 4567788887766442 11111 123456888888888886543211 000113457888888774
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+. .+..-...+..|.+|++..+..... +......++.|++|.+...
T Consensus 606 ~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 606 GIS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred Ccc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeecc
Confidence 344 1222122566778888876432221 1223333678888888764
No 64
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.15 E-value=0.035 Score=25.57 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=9.9
Q ss_pred CCCEEeccCCCCCChHHHHHHH
Q psy9589 132 LLAKMDLEECVLITDATLIHLA 153 (163)
Q Consensus 132 ~L~~L~l~~~~~l~~~~~~~l~ 153 (163)
+|++|++++| .++++++..+.
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 4455555554 44444444433
No 65
>KOG0617|consensus
Probab=94.98 E-value=0.00038 Score=47.08 Aligned_cols=12 Identities=33% Similarity=0.276 Sum_probs=7.2
Q ss_pred cCCCCceEecCC
Q psy9589 77 NCPNLYYLCLSG 88 (163)
Q Consensus 77 ~~~~L~~L~l~~ 88 (163)
.+|-|+.|++++
T Consensus 100 s~p~levldlty 111 (264)
T KOG0617|consen 100 SFPALEVLDLTY 111 (264)
T ss_pred CCchhhhhhccc
Confidence 456666666655
No 66
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.91 E-value=0.05 Score=25.05 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=12.3
Q ss_pred CcCCEEEecCCCCCChHHHHHHHh
Q psy9589 41 HQLHTLEVASCSQFTDTGFQALAR 64 (163)
Q Consensus 41 ~~L~~L~l~~~~~~~~~~~~~l~~ 64 (163)
++|++|+|++| .+.+.|...+++
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHH
Confidence 34556666554 455555555543
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.54 E-value=0.08 Score=40.90 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=24.3
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQF 54 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~ 54 (163)
..++++++|++++|. ++.-. ..-++|++|.+++|..+
T Consensus 49 ~~~~~l~~L~Is~c~-L~sLP-----~LP~sLtsL~Lsnc~nL 85 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESLP-----VLPNELTEITIENCNNL 85 (426)
T ss_pred HHhcCCCEEEeCCCC-CcccC-----CCCCCCcEEEccCCCCc
Confidence 446889999998873 32211 22236899999888654
No 68
>KOG0531|consensus
Probab=94.52 E-value=0.012 Score=45.44 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=51.5
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
..+.+|+.|++.++.. ..+..+...+++|++|+++++ .|+. .++. .++.|+.|++.++.
T Consensus 92 ~~~~~l~~l~l~~n~i---~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~----------------~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKI---EKIENLLSSLVNLQVLDLSFN-KITKLEGLS----------------TLTLLKELNLSGNL 151 (414)
T ss_pred ccccceeeeeccccch---hhcccchhhhhcchheecccc-ccccccchh----------------hccchhhheeccCc
Confidence 3456777777766432 111122455777888888776 3332 2222 33446666666642
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
+.+. ..+. .++.|+.++++++ .+++..-.. ...+..|+.+++..+
T Consensus 152 -i~~~--~~~~-~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 152 -ISDI--SGLE-SLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred -chhc--cCCc-cchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCC
Confidence 2211 1111 2556666666663 233322101 234566666666665
No 69
>KOG4237|consensus
Probab=93.99 E-value=0.033 Score=42.56 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=10.0
Q ss_pred HHhCCcCCEEEecCC
Q psy9589 37 AQRCHQLHTLEVASC 51 (163)
Q Consensus 37 ~~~~~~L~~L~l~~~ 51 (163)
...+|+|+.|++++|
T Consensus 270 f~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN 284 (498)
T ss_pred HhhcccceEeccCCC
Confidence 345677777777765
No 70
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.81 E-value=0.18 Score=42.06 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH--HHHHHHHHcCCCCCEEeccCCCCCChHHHHHH
Q psy9589 79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD--TGFQALARNCRLLAKMDLEECVLITDATLIHL 152 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 152 (163)
+.|+.|+++++. ++... ..+. +.|+.|+++++ .++. ..+..+...++.+..|++.+| .++...+..+
T Consensus 367 ~~L~~LdLs~N~-Lt~LP-~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~~L 435 (754)
T PRK15370 367 PTITTLDVSRNA-LTNLP-ENLP---AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQNM 435 (754)
T ss_pred CCcCEEECCCCc-CCCCC-HhHH---HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHHHH
Confidence 467777776642 33110 1111 24666666653 3331 123334444577888888887 6666555443
No 71
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=93.56 E-value=0.055 Score=24.49 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=20.4
Q ss_pred CCcEEeecCCCCCChHHHHHHHHhCC
Q psy9589 16 NLYYLCLSGCSQLTDASLIVLAQRCH 41 (163)
Q Consensus 16 ~L~~L~l~~~~~~~~~~l~~i~~~~~ 41 (163)
+|++|.|..+.+.++..++.+.+.||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 47888888877766678888888776
No 72
>KOG0617|consensus
Probab=93.52 E-value=0.00079 Score=45.60 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=47.2
Q ss_pred CCCCcEEeecCCCC--CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 14 CPNLYYLCLSGCSQ--LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 14 ~~~L~~L~l~~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
+.+++.|.++++.. +.+ .|+. +.+|+.|+++++ .+.+- ..-...+|.|++|+++-. .
T Consensus 32 ~s~ITrLtLSHNKl~~vpp----nia~-l~nlevln~~nn-qie~l--------------p~~issl~klr~lnvgmn-r 90 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPP----NIAE-LKNLEVLNLSNN-QIEEL--------------PTSISSLPKLRILNVGMN-R 90 (264)
T ss_pred hhhhhhhhcccCceeecCC----cHHH-hhhhhhhhcccc-hhhhc--------------Chhhhhchhhhheecchh-h
Confidence 45677777877653 112 1222 678888888876 33221 111236789999988752 2
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFT 119 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~ 119 (163)
+.- ....++ .+|.|+.|++.++ +++
T Consensus 91 l~~-lprgfg-s~p~levldltyn-nl~ 115 (264)
T KOG0617|consen 91 LNI-LPRGFG-SFPALEVLDLTYN-NLN 115 (264)
T ss_pred hhc-CccccC-CCchhhhhhcccc-ccc
Confidence 211 011122 5789999999874 444
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.45 E-value=0.092 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=6.4
Q ss_pred CCCCEEeccCC
Q psy9589 131 RLLAKMDLEEC 141 (163)
Q Consensus 131 ~~L~~L~l~~~ 141 (163)
++|+.|++++|
T Consensus 1 ~~L~~L~l~~n 11 (17)
T PF13504_consen 1 PNLRTLDLSNN 11 (17)
T ss_dssp TT-SEEEETSS
T ss_pred CccCEEECCCC
Confidence 35666677666
No 74
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=91.82 E-value=0.64 Score=39.00 Aligned_cols=32 Identities=19% Similarity=0.098 Sum_probs=16.1
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
++|+.|++++|. ++.-.. ..+++|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~-LtsLP~----~l~~nL~~L~Ls~N 230 (754)
T PRK15370 199 EQITTLILDNNE-LKSLPE----NLQGNIKTLYANSN 230 (754)
T ss_pred cCCcEEEecCCC-CCcCCh----hhccCCCEEECCCC
Confidence 356666666643 222111 11346777777665
No 75
>KOG3735|consensus
Probab=91.07 E-value=0.98 Score=33.86 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=37.1
Q ss_pred CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------------CHHHHHHHHhcCCCCceEecCC
Q psy9589 28 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------------LDSAVLSLAENCPNLYYLCLSG 88 (163)
Q Consensus 28 ~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~~L~~L~l~~ 88 (163)
..+..++.+...=|+|+.++++....++..-+..++... ....+..+.+.++.|++|++.+
T Consensus 185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves 264 (353)
T KOG3735|consen 185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES 264 (353)
T ss_pred hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc
Confidence 344455555555566666666666666655555444322 0111222334455555555555
Q ss_pred CCCCCHHHHHHHH
Q psy9589 89 CSQLTDASLIVLA 101 (163)
Q Consensus 89 ~~~~~~~~~~~l~ 101 (163)
..++..++.++.
T Consensus 265 -nFItg~gi~a~~ 276 (353)
T KOG3735|consen 265 -NFITGLGIMALL 276 (353)
T ss_pred -cccccHHHHHHH
Confidence 455555555554
No 76
>KOG4579|consensus
Probab=90.90 E-value=0.098 Score=34.38 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=38.5
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
....|+..+|++. .+.+ ....+...+|-++.|++.. +.+++-..+ + ..+|.|+.|+++.|+
T Consensus 51 ~~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE-~-Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE-L-AAMPALRSLNLRFNP 111 (177)
T ss_pred CCceEEEEecccc-hhhh-CCHHHhhccchhhhhhcch-hhhhhchHH-H-hhhHHhhhcccccCc
Confidence 3456777777773 2321 2224444677788888877 456665544 3 347889999999883
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.33 E-value=0.25 Score=37.74 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.1
Q ss_pred hCCcCCEEEecCC
Q psy9589 39 RCHQLHTLEVASC 51 (163)
Q Consensus 39 ~~~~L~~L~l~~~ 51 (163)
.+|+|+.|+++.|
T Consensus 161 ~l~~L~~L~l~~N 173 (394)
T COG4886 161 NLPNLKNLDLSFN 173 (394)
T ss_pred ccccccccccCCc
Confidence 3555555555554
No 78
>KOG0531|consensus
Probab=88.56 E-value=0.13 Score=39.83 Aligned_cols=83 Identities=23% Similarity=0.146 Sum_probs=53.9
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCC
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGC 89 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 89 (163)
...+++|++|+++++...+-..+. .++.|+.|++++|. ++. .++ +.++.|+.++++++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~-i~~~~~~----------------~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNL-ISDISGL----------------ESLKSLKLLDLSYN 172 (414)
T ss_pred hhhhhcchheeccccccccccchh----hccchhhheeccCc-chhccCC----------------ccchhhhcccCCcc
Confidence 456899999999997654445553 35669999999983 332 121 13567888888874
Q ss_pred CCCCHHHHHHHHHhCCCCCEEEecCCC
Q psy9589 90 SQLTDASLIVLAQRCHQLHTLEVASCS 116 (163)
Q Consensus 90 ~~~~~~~~~~l~~~~~~L~~L~l~~~~ 116 (163)
.+.+..... ...+..++.+.++++.
T Consensus 173 -~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 173 -RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred -hhhhhhhhh-hhhccchHHHhccCCc
Confidence 344333311 3367788888887743
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=86.23 E-value=0.35 Score=20.68 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=10.3
Q ss_pred CCCEEeccCCCCCC
Q psy9589 132 LLAKMDLEECVLIT 145 (163)
Q Consensus 132 ~L~~L~l~~~~~l~ 145 (163)
+|++|++++| .++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 4788899988 665
No 80
>KOG3735|consensus
Probab=84.54 E-value=3.8 Score=30.87 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHh---CCCCCEEEecCCCCCCHH---HHHHHHHcCCCCCEEeccCCC
Q psy9589 69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEVASCSQFTDT---GFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~ 142 (163)
..+..+-..-|.++..++++...+....+..+... ..+.+...+.+. ..++. ++..+.+.++.|++|+++++
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn- 265 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN- 265 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc-
Confidence 44455555668999999999888887777666543 356677777653 33332 34445566889999999997
Q ss_pred CCChHHHHHHHhCCCC
Q psy9589 143 LITDATLIHLALGCPR 158 (163)
Q Consensus 143 ~l~~~~~~~l~~~~~~ 158 (163)
-||..++.++++.++.
T Consensus 266 FItg~gi~a~~~al~~ 281 (353)
T KOG3735|consen 266 FITGLGIMALLRALQS 281 (353)
T ss_pred ccccHHHHHHHHHHhc
Confidence 8888888777665443
No 81
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=84.49 E-value=0.73 Score=35.22 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=30.6
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+|+|+.|+++++ .+++.... ....+.|+.|+++++ .+++-... ......|++|.++++
T Consensus 161 ~l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N-~i~~l~~~--~~~~~~L~~l~~~~N 219 (394)
T COG4886 161 NLPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGN-KISDLPPE--IELLSALEELDLSNN 219 (394)
T ss_pred ccccccccccCCc-hhhhhhhh--hhhhhhhhheeccCC-ccccCchh--hhhhhhhhhhhhcCC
Confidence 6778888888774 34332221 114677777777773 34432211 011233555555554
No 82
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=83.34 E-value=0.87 Score=28.83 Aligned_cols=108 Identities=15% Similarity=0.300 Sum_probs=57.6
Q ss_pred HHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEec
Q psy9589 34 IVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVA 113 (163)
Q Consensus 34 ~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 113 (163)
..+...|++++ .++..-..... ..+..++..++.| ..+|+.-..-....+..++.+|+.|.. +++
T Consensus 4 ~~~F~~~~~l~-~~i~~~dts~v------------t~m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls 68 (120)
T PF03382_consen 4 SSMFANCTNLN-IDISNWDTSNV------------TDMSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLS 68 (120)
T ss_pred HHHHHhchhcc-CCccccccccc------------eeHHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-Ccc
Confidence 44556677776 66655422212 2334455566666 223433111122345667778888888 775
Q ss_pred C--CCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh-HHHHHHHhCCCCCc
Q psy9589 114 S--CSQFTDTGFQALARNCRLLAKMDLEECVLITD-ATLIHLALGCPRLE 160 (163)
Q Consensus 114 ~--~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~ 160 (163)
. ..+++ .+..+..++..| ..+++.- .+.. ..+...+..|+.|+
T Consensus 69 ~w~~s~v~--~~~~mF~~~~~l-~~~l~~w-n~~~v~~~~~mF~~~~~l~ 114 (120)
T PF03382_consen 69 NWDTSNVT--NMSNMFSGCSSL-NQDLSNW-NTSSVTNMSSMFANCSNLN 114 (120)
T ss_pred cccccccc--cHHHHHhhhHHc-CCchhhc-cccccccHHHHHhChHhcc
Confidence 4 33344 345666667777 5556532 2222 23566777777665
No 83
>KOG0472|consensus
Probab=83.15 E-value=0.38 Score=37.21 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 100 LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 100 l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
+.+.+++|..|++.+ +++++..-+... +.+|++||+++| .|+
T Consensus 247 ~~~~L~~l~vLDLRd-Nklke~Pde~cl--LrsL~rLDlSNN-~is 288 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRD-NKLKEVPDEICL--LRSLERLDLSNN-DIS 288 (565)
T ss_pred Hhcccccceeeeccc-cccccCchHHHH--hhhhhhhcccCC-ccc
Confidence 344678889999987 456643322111 467889999887 554
No 84
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=82.92 E-value=1.1 Score=28.40 Aligned_cols=106 Identities=17% Similarity=0.304 Sum_probs=53.4
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
-..+++|+ .++.......-..+..+...|+.| ..+|+.- ..+ . ...+..++..++.|.. +++.-.
T Consensus 7 F~~~~~l~-~~i~~~dts~vt~m~~mF~~~~~l-~~~l~~w-~~s--~---------vt~m~~mF~~~~~l~~-dls~w~ 71 (120)
T PF03382_consen 7 FANCTNLN-IDISNWDTSNVTDMSYMFYGCTSL-NQDLSNW-DTS--N---------VTNMSGMFAGCSSLNQ-DLSNWD 71 (120)
T ss_pred HHhchhcc-CCccccccccceeHHHHhhcchhc-cCChhhh-cch--h---------heeHHHHHhhhhhcCC-Cccccc
Confidence 34566665 555553333334555566667766 3334332 111 1 1334555666777777 675422
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecC--CCCCCHHHHHHHHHcCCCCC
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVAS--CSQFTDTGFQALARNCRLLA 134 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~--~~~i~~~~~~~l~~~~~~L~ 134 (163)
.-.......++.+|+.| ..+|+. ..++++ +..+..+++.|+
T Consensus 72 ~s~v~~~~~mF~~~~~l-~~~l~~wn~~~v~~--~~~mF~~~~~l~ 114 (120)
T PF03382_consen 72 TSNVTNMSNMFSGCSSL-NQDLSNWNTSSVTN--MSSMFANCSNLN 114 (120)
T ss_pred ccccccHHHHHhhhHHc-CCchhhcccccccc--HHHHHhChHhcc
Confidence 12234567777778888 555543 233332 344555555443
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.40 E-value=0.19 Score=31.70 Aligned_cols=119 Identities=19% Similarity=0.404 Sum_probs=51.4
Q ss_pred hcCCCCcEEeecCCC-CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 12 ENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~-~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
..+++|+.+.+.... .+.+ .....+++|+.+.+.+. +...+-. .+..++.|+.+.+..
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~----~~F~~~~~l~~i~~~~~--~~~i~~~-------------~F~~~~~l~~i~~~~-- 67 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGE----NAFSNCTSLKSINFPNN--LTSIGDN-------------AFSNCKSLESITFPN-- 67 (129)
T ss_dssp TT-TT--EEEETST--EE-T----TTTTT-TT-SEEEESST--TSCE-TT-------------TTTT-TT-EEEEETS--
T ss_pred hCCCCCCEEEECCCeeEeCh----hhccccccccccccccc--cccccee-------------eeecccccccccccc--
Confidence 357789999987421 1222 23356889999999863 3322211 123577899999965
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC-CCCChHHHHHHHhCCCCCc
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC-VLITDATLIHLALGCPRLE 160 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~ 160 (163)
.+...+- .....+++|+.+.+.. .++.-+...+ .++ .|+.+.+..+ ..+.+ ..+..|++|+
T Consensus 68 ~~~~i~~-~~F~~~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~~~~~i~~----~~F~~~~~l~ 129 (129)
T PF13306_consen 68 NLKSIGD-NAFSNCTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPSNITKIEE----NAFKNCTKLK 129 (129)
T ss_dssp TT-EE-T-TTTTT-TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TTB-SS--------GGG------
T ss_pred ccccccc-ccccccccccccccCc--cccEEchhhh-cCC-CceEEEECCCccEECC----ccccccccCC
Confidence 2221121 2233689999999965 2443222223 445 8899888753 23322 4456787775
No 86
>PRK15386 type III secretion protein GogB; Provisional
Probab=79.77 E-value=1.1 Score=34.82 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=44.0
Q ss_pred hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCC-CCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589 39 RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCP-NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ 117 (163)
Q Consensus 39 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 117 (163)
.|+++++|++++| .+..+. .+| +|++|.+++|..+... ... -.++|++|.+++|..
T Consensus 50 ~~~~l~~L~Is~c------~L~sLP-------------~LP~sLtsL~Lsnc~nLtsL--P~~--LP~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 50 EARASGRLYIKDC------DIESLP-------------VLPNELTEITIENCNNLTTL--PGS--IPEGLEKLTVCHCPE 106 (426)
T ss_pred HhcCCCEEEeCCC------CCcccC-------------CCCCCCcEEEccCCCCcccC--Cch--hhhhhhheEccCccc
Confidence 4899999999987 333321 233 6999999888664211 111 135889999988765
Q ss_pred CCHHHHHHHHHcCCCCCEEeccC
Q psy9589 118 FTDTGFQALARNCRLLAKMDLEE 140 (163)
Q Consensus 118 i~~~~~~~l~~~~~~L~~L~l~~ 140 (163)
++ .+. ++|+.|+++.
T Consensus 107 L~-----sLP---~sLe~L~L~~ 121 (426)
T PRK15386 107 IS-----GLP---ESVRSLEIKG 121 (426)
T ss_pred cc-----ccc---cccceEEeCC
Confidence 54 122 3566666654
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=76.48 E-value=2.6 Score=18.50 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=11.0
Q ss_pred CCCCEEeccCCCCCCh
Q psy9589 131 RLLAKMDLEECVLITD 146 (163)
Q Consensus 131 ~~L~~L~l~~~~~l~~ 146 (163)
++|++|++++| .++.
T Consensus 2 ~~L~~L~L~~N-~l~~ 16 (26)
T smart00369 2 PNLRELDLSNN-QLSS 16 (26)
T ss_pred CCCCEEECCCC-cCCc
Confidence 57888999887 5543
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=76.48 E-value=2.6 Score=18.50 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=11.0
Q ss_pred CCCCEEeccCCCCCCh
Q psy9589 131 RLLAKMDLEECVLITD 146 (163)
Q Consensus 131 ~~L~~L~l~~~~~l~~ 146 (163)
++|++|++++| .++.
T Consensus 2 ~~L~~L~L~~N-~l~~ 16 (26)
T smart00370 2 PNLRELDLSNN-QLSS 16 (26)
T ss_pred CCCCEEECCCC-cCCc
Confidence 57888999887 5543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.55 E-value=4.7 Score=18.11 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=11.4
Q ss_pred CCCCEEeccCCCCCCh
Q psy9589 131 RLLAKMDLEECVLITD 146 (163)
Q Consensus 131 ~~L~~L~l~~~~~l~~ 146 (163)
.+|+.|++++| .|+.
T Consensus 2 ~~L~~L~L~~N-kI~~ 16 (26)
T smart00365 2 TNLEELDLSQN-KIKK 16 (26)
T ss_pred CccCEEECCCC-ccce
Confidence 57889999987 6643
No 90
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=58.55 E-value=45 Score=21.17 Aligned_cols=120 Identities=10% Similarity=0.141 Sum_probs=71.3
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCc--CCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQ--LHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~--L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
+.-+.+.|.+.. .+...+..+.+.+.. |+.|.+ +.......+..+.. ...+.+++.+.+.+..
T Consensus 15 ~~l~vk~l~i~~---~~~~~~~~iL~~l~p~~L~~i~i--~~~~~~~~~~~i~~----------~eqWk~~k~~~i~~~~ 79 (142)
T PF01827_consen 15 HKLKVKKLKINS---LNQSEVLSILPFLDPGVLEEIRI--NDEEEEEDFDEIVE----------LEQWKNAKEFKIGGFV 79 (142)
T ss_pred CCeeEEEEEEEc---CCHHHHHHHHhcCCCCcCEEEEC--cCcccccchhheee----------hHHhceeheeEecccc
Confidence 344566677655 345566677776653 999999 22222323332222 1267899999988742
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHc---CCCCCEEeccCCCCCChHHHHHHH
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARN---CRLLAKMDLEECVLITDATLIHLA 153 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~ 153 (163)
.....+ ..+-++..+.+.- ..++.+.+..+.+. .++.+...+......+...+.+++
T Consensus 80 -~~~~~l----~~f~h~~~~~i~~-~~~t~~di~~l~~~l~~~~~~~~~~i~~~~~~~~~~l~~~F 139 (142)
T PF01827_consen 80 -IDSFPL----ENFSHFEKFNIHF-ESITVEDIWKLKENLLKSPNFKYFRIYSSTDFDPDELAKVF 139 (142)
T ss_pred -cccHHH----HhCCCccEEEEEE-EeCCHHHHHHHHHHHcCCCCceEEEEcccCCCCHHHHHHhh
Confidence 221122 2566888888843 56887666555443 578888888333466666666665
No 91
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=51.90 E-value=13 Score=16.78 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=9.8
Q ss_pred HHHhcCCCCceEecCC
Q psy9589 73 SLAENCPNLYYLCLSG 88 (163)
Q Consensus 73 ~~~~~~~~L~~L~l~~ 88 (163)
.+...+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3445667777776643
No 92
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=46.94 E-value=49 Score=18.23 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=8.1
Q ss_pred CCCcEEeecCCCCCChHHH
Q psy9589 15 PNLYYLCLSGCSQLTDASL 33 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l 33 (163)
.+++.+.+.+...++-+.+
T Consensus 11 ~~~~~l~i~~~~~it~~~L 29 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDL 29 (70)
T ss_pred CCCCEEEEccCCcccHHHH
Confidence 3445555544333333333
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=46.27 E-value=14 Score=16.68 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=10.2
Q ss_pred CCCCEEeccCCCCCC
Q psy9589 131 RLLAKMDLEECVLIT 145 (163)
Q Consensus 131 ~~L~~L~l~~~~~l~ 145 (163)
++|+.|++++| +++
T Consensus 2 ~~L~~L~vs~N-~Lt 15 (26)
T smart00364 2 PSLKELNVSNN-QLT 15 (26)
T ss_pred cccceeecCCC-ccc
Confidence 46888888887 543
No 94
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=43.76 E-value=52 Score=21.18 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=27.0
Q ss_pred HHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecC
Q psy9589 9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS 50 (163)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~ 50 (163)
.+..--|+=+.++|..-+ ++..+-.+.+.||+|+.+-+..
T Consensus 11 EI~~Ln~nE~~VHlAFRP--SN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 11 EIETLNPNEEIVHLAFRP--SNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred HHhhcCCCceEEEEEecC--cchHHHHHHHhCCCCeEEeCCh
Confidence 344455666677776644 5666667788888888888753
No 95
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=20.45 E-value=1.3e+02 Score=15.52 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=6.0
Q ss_pred HHHhCCcCCEEEe
Q psy9589 36 LAQRCHQLHTLEV 48 (163)
Q Consensus 36 i~~~~~~L~~L~l 48 (163)
+.+..+.|+.+.|
T Consensus 37 il~na~~Lk~m~i 49 (51)
T PF08387_consen 37 ILENAPVLKKMTI 49 (51)
T ss_pred HHhhhhhhcEEEE
Confidence 3344444554444
Done!