Query psy9589
Match_columns 163
No_of_seqs 104 out of 1495
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 23:32:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.7 2.2E-16 7.7E-21 123.7 17.7 153 8-163 335-519 (592)
2 2ast_B S-phase kinase-associat 99.7 7.3E-17 2.5E-21 118.5 14.0 145 15-162 93-252 (336)
3 2p1m_B Transport inhibitor res 99.7 2.6E-16 8.8E-21 123.4 17.5 146 11-161 310-485 (594)
4 3e4g_A ATP synthase subunit S, 99.7 6.7E-18 2.3E-22 113.2 7.1 104 42-160 62-170 (176)
5 3e4g_A ATP synthase subunit S, 99.7 7.1E-18 2.4E-22 113.1 7.2 109 15-135 61-171 (176)
6 2ast_B S-phase kinase-associat 99.7 1.2E-16 4.1E-21 117.3 13.9 151 9-163 112-278 (336)
7 3ogk_B Coronatine-insensitive 99.7 1.4E-15 4.6E-20 119.3 17.5 152 9-163 312-494 (592)
8 2p1m_B Transport inhibitor res 99.7 1.6E-15 5.4E-20 118.9 16.8 89 69-161 422-510 (594)
9 1io0_A Tropomodulin; LRR prote 99.6 2.5E-13 8.5E-18 92.2 17.2 134 2-148 23-167 (185)
10 3un9_A NLR family member X1; l 99.5 2.7E-13 9.1E-18 101.4 13.5 134 15-153 101-260 (372)
11 2ca6_A RAN GTPase-activating p 99.5 8.1E-13 2.8E-17 98.9 16.0 46 12-59 91-139 (386)
12 2ca6_A RAN GTPase-activating p 99.5 3.5E-12 1.2E-16 95.4 16.9 49 11-60 56-112 (386)
13 1z7x_W Ribonuclease inhibitor; 99.4 3E-12 1E-16 97.5 14.6 141 12-157 253-423 (461)
14 3un9_A NLR family member X1; l 99.4 2.2E-12 7.5E-17 96.4 13.2 70 75-147 207-285 (372)
15 1z7x_W Ribonuclease inhibitor; 99.4 2E-12 6.8E-17 98.5 13.2 139 8-163 21-176 (461)
16 1io0_A Tropomodulin; LRR prote 99.4 1.8E-11 6.2E-16 82.9 14.2 122 30-163 25-157 (185)
17 3goz_A Leucine-rich repeat-con 99.3 9E-12 3.1E-16 92.5 8.9 143 15-162 80-258 (362)
18 3goz_A Leucine-rich repeat-con 99.3 1E-10 3.5E-15 86.9 13.8 43 13-57 48-95 (362)
19 2je0_A Acidic leucine-rich nuc 99.3 2.1E-12 7.1E-17 84.3 3.5 131 12-163 14-146 (149)
20 4ezg_A Putative uncharacterize 99.3 1.8E-12 6E-17 88.6 3.2 77 77-162 110-186 (197)
21 1pgv_A TMD-1, tropomodulin TMD 99.2 8.3E-10 2.8E-14 75.2 14.4 130 5-146 31-171 (197)
22 2ra8_A Uncharacterized protein 99.2 3.6E-11 1.2E-15 89.5 6.8 74 78-154 251-329 (362)
23 2ell_A Acidic leucine-rich nuc 99.2 3.2E-12 1.1E-16 85.0 0.6 131 12-163 21-153 (168)
24 2ra8_A Uncharacterized protein 99.1 1E-09 3.5E-14 81.7 11.2 138 7-163 164-313 (362)
25 4ezg_A Putative uncharacterize 99.1 5.8E-11 2E-15 81.0 2.7 124 13-163 42-165 (197)
26 1pgv_A TMD-1, tropomodulin TMD 99.0 1E-08 3.5E-13 69.8 12.6 128 24-162 24-162 (197)
27 2je0_A Acidic leucine-rich nuc 99.0 1.3E-09 4.3E-14 70.9 6.7 109 12-140 39-149 (149)
28 4fmz_A Internalin; leucine ric 99.0 1.8E-09 6.2E-14 79.3 7.5 121 13-163 219-339 (347)
29 1wwl_A Monocyte differentiatio 98.9 5.6E-10 1.9E-14 81.2 4.4 67 77-146 171-242 (312)
30 1a9n_A U2A', U2A'; complex (nu 98.9 5.1E-10 1.7E-14 74.9 2.5 128 13-163 17-146 (176)
31 1wwl_A Monocyte differentiatio 98.9 1.9E-10 6.6E-15 83.7 -0.2 134 13-163 93-234 (312)
32 1h6t_A Internalin B; cell adhe 98.9 2.3E-09 8E-14 77.3 5.0 35 13-51 66-100 (291)
33 2ell_A Acidic leucine-rich nuc 98.8 7.5E-10 2.6E-14 73.4 2.0 109 12-141 46-157 (168)
34 1h6u_A Internalin H; cell adhe 98.8 2.9E-09 9.9E-14 77.4 5.1 35 13-51 61-95 (308)
35 4fmz_A Internalin; leucine ric 98.8 2.6E-09 9E-14 78.5 4.9 35 13-51 64-98 (347)
36 4glp_A Monocyte differentiatio 98.8 5.3E-10 1.8E-14 81.3 0.6 38 103-141 195-234 (310)
37 1m9s_A Internalin B; cell inva 98.8 2.4E-09 8.3E-14 84.6 4.2 74 77-162 129-202 (605)
38 1h6t_A Internalin B; cell adhe 98.8 4.5E-09 1.6E-13 75.8 5.1 121 11-163 86-206 (291)
39 1ds9_A Outer arm dynein; leuci 98.8 8.8E-11 3E-15 80.1 -3.9 128 11-163 44-180 (198)
40 3rfs_A Internalin B, repeat mo 98.8 3.1E-10 1.1E-14 81.1 -1.6 35 13-51 61-95 (272)
41 1h6u_A Internalin H; cell adhe 98.8 7.4E-09 2.5E-13 75.2 5.2 74 77-162 149-222 (308)
42 1ozn_A Reticulon 4 receptor; N 98.8 1.3E-10 4.5E-15 83.4 -4.3 56 103-162 175-230 (285)
43 4glp_A Monocyte differentiatio 98.8 6.4E-10 2.2E-14 80.8 -0.9 84 77-163 143-230 (310)
44 1m9s_A Internalin B; cell inva 98.7 6.7E-09 2.3E-13 82.1 4.3 120 12-163 62-181 (605)
45 1xeu_A Internalin C; cellular 98.7 5.1E-09 1.7E-13 74.5 3.1 72 79-162 106-177 (263)
46 1ozn_A Reticulon 4 receptor; N 98.7 4.6E-10 1.6E-14 80.5 -2.8 37 103-141 199-235 (285)
47 3v47_A TOLL-like receptor 5B a 98.7 4.4E-10 1.5E-14 85.5 -3.9 35 15-51 30-64 (455)
48 3m19_A Variable lymphocyte rec 98.7 5E-10 1.7E-14 79.0 -3.5 37 13-51 57-93 (251)
49 4g8a_A TOLL-like receptor 4; l 98.6 4E-10 1.4E-14 88.6 -5.1 34 16-51 53-86 (635)
50 2z62_A TOLL-like receptor 4, v 98.6 2.9E-10 1E-14 81.2 -5.4 65 77-145 98-162 (276)
51 2z80_A TOLL-like receptor 2, v 98.6 2.6E-09 8.9E-14 78.9 -0.7 40 12-52 121-160 (353)
52 1a9n_A U2A', U2A'; complex (nu 98.6 1.5E-08 5.2E-13 67.6 3.1 113 12-146 39-154 (176)
53 2o6q_A Variable lymphocyte rec 98.6 1E-09 3.6E-14 78.2 -3.0 37 103-141 155-191 (270)
54 2o6q_A Variable lymphocyte rec 98.6 5.2E-10 1.8E-14 79.8 -4.6 80 77-162 107-186 (270)
55 3e6j_A Variable lymphocyte rec 98.6 1.2E-09 4.2E-14 76.2 -2.6 35 15-51 40-74 (229)
56 3rfs_A Internalin B, repeat mo 98.6 3.4E-09 1.2E-13 75.7 -0.7 39 13-56 39-77 (272)
57 1xku_A Decorin; proteoglycan, 98.6 4.5E-09 1.5E-13 76.8 -0.1 13 39-51 169-181 (330)
58 2o6s_A Variable lymphocyte rec 98.6 7.4E-10 2.5E-14 75.9 -4.2 13 39-51 50-62 (208)
59 2z7x_B TOLL-like receptor 1, v 98.6 8E-09 2.7E-13 79.9 1.0 38 12-51 321-358 (520)
60 1o6v_A Internalin A; bacterial 98.6 5.8E-08 2E-12 74.2 5.7 74 77-162 307-380 (466)
61 1o6v_A Internalin A; bacterial 98.6 8.8E-08 3E-12 73.2 6.7 74 77-162 285-358 (466)
62 3o53_A Protein LRIM1, AGAP0063 98.6 1.2E-09 4.2E-14 79.6 -3.7 77 78-161 190-266 (317)
63 2v70_A SLIT-2, SLIT homolog 2 98.6 6.1E-10 2.1E-14 77.3 -5.2 61 77-141 103-163 (220)
64 2id5_A Lingo-1, leucine rich r 98.6 1.9E-09 6.5E-14 82.5 -3.4 37 13-51 54-90 (477)
65 2z66_A Variable lymphocyte rec 98.6 2.9E-10 9.9E-15 82.3 -7.6 61 77-141 173-233 (306)
66 3v47_A TOLL-like receptor 5B a 98.5 1E-08 3.4E-13 77.9 0.5 116 12-145 51-167 (455)
67 3m19_A Variable lymphocyte rec 98.5 1.3E-09 4.4E-14 76.9 -4.4 38 15-55 35-72 (251)
68 2v9t_B SLIT homolog 2 protein 98.5 8.9E-10 3.1E-14 76.4 -5.1 12 40-51 55-66 (220)
69 2z80_A TOLL-like receptor 2, v 98.5 3.3E-09 1.1E-13 78.3 -2.5 38 12-51 97-134 (353)
70 3zyj_A Leucine-rich repeat-con 98.5 1.8E-09 6.1E-14 82.1 -4.1 37 13-51 86-122 (440)
71 3zyi_A Leucine-rich repeat-con 98.5 2E-09 7E-14 82.0 -3.8 39 13-53 145-183 (452)
72 4fcg_A Uncharacterized protein 98.5 4.2E-09 1.5E-13 77.2 -2.1 63 77-143 227-289 (328)
73 2o6s_A Variable lymphocyte rec 98.5 4.1E-09 1.4E-13 72.2 -2.1 111 12-142 49-159 (208)
74 4fcg_A Uncharacterized protein 98.5 4.8E-09 1.6E-13 76.9 -2.0 12 130-141 252-263 (328)
75 2z63_A TOLL-like receptor 4, v 98.5 1.3E-09 4.3E-14 85.0 -5.4 62 77-141 98-159 (570)
76 3zyj_A Leucine-rich repeat-con 98.5 1.9E-09 6.6E-14 81.9 -4.4 38 13-52 134-171 (440)
77 2z7x_B TOLL-like receptor 1, v 98.5 1.1E-08 3.9E-13 79.0 -0.4 126 13-162 346-473 (520)
78 3vq2_A TLR4, TOLL-like recepto 98.5 1.3E-09 4.5E-14 85.7 -5.8 62 77-141 102-163 (606)
79 1xeu_A Internalin C; cellular 98.5 4.4E-08 1.5E-12 69.7 2.6 119 12-163 38-156 (263)
80 3zyi_A Leucine-rich repeat-con 98.5 2.5E-09 8.5E-14 81.5 -4.2 31 130-162 217-247 (452)
81 3o6n_A APL1; leucine-rich repe 98.5 4.5E-09 1.5E-13 78.5 -2.9 65 77-146 115-179 (390)
82 4g8a_A TOLL-like receptor 4; l 98.5 1.7E-08 5.9E-13 79.3 0.1 114 12-145 73-186 (635)
83 3o6n_A APL1; leucine-rich repe 98.5 4.1E-09 1.4E-13 78.8 -3.3 128 13-162 43-170 (390)
84 3t6q_A CD180 antigen; protein- 98.5 4.9E-09 1.7E-13 82.4 -3.4 126 13-160 55-180 (606)
85 1dce_A Protein (RAB geranylger 98.5 1.7E-08 5.7E-13 79.3 -0.4 123 15-163 441-566 (567)
86 2z62_A TOLL-like receptor 4, v 98.5 7.6E-09 2.6E-13 73.8 -2.2 61 77-141 74-134 (276)
87 3rgz_A Protein brassinosteroid 98.5 9.4E-09 3.2E-13 83.2 -1.9 55 103-162 198-252 (768)
88 3j0a_A TOLL-like receptor 5; m 98.4 1E-09 3.5E-14 89.7 -8.0 63 77-141 95-158 (844)
89 1p9a_G Platelet glycoprotein I 98.4 4.2E-09 1.4E-13 76.0 -4.1 13 13-25 53-65 (290)
90 2v9t_B SLIT homolog 2 protein 98.4 1.6E-08 5.4E-13 70.1 -1.1 111 12-142 53-163 (220)
91 4ecn_A Leucine-rich repeat pro 98.4 4.9E-08 1.7E-12 80.1 1.5 115 12-145 445-586 (876)
92 3o53_A Protein LRIM1, AGAP0063 98.4 2.9E-09 9.8E-14 77.6 -5.2 43 7-51 26-68 (317)
93 2id5_A Lingo-1, leucine rich r 98.4 5E-09 1.7E-13 80.2 -4.1 113 12-145 77-189 (477)
94 2z81_A CD282 antigen, TOLL-lik 98.4 3E-07 1E-11 71.4 5.6 12 103-114 385-396 (549)
95 4ecn_A Leucine-rich repeat pro 98.4 3.8E-08 1.3E-12 80.8 0.6 117 13-145 489-608 (876)
96 2xot_A Amphoterin-induced prot 98.4 2.8E-09 9.7E-14 79.1 -5.6 114 13-146 62-177 (361)
97 3t6q_A CD180 antigen; protein- 98.4 2.5E-09 8.6E-14 84.1 -6.2 12 130-141 448-459 (606)
98 2v70_A SLIT-2, SLIT homolog 2 98.4 1.6E-08 5.4E-13 70.1 -1.5 128 14-162 31-158 (220)
99 3oja_B Anopheles plasmodium-re 98.4 1.2E-08 4.1E-13 80.4 -2.5 114 12-146 72-185 (597)
100 3vq2_A TLR4, TOLL-like recepto 98.4 1.7E-09 5.7E-14 85.1 -7.4 12 130-141 520-531 (606)
101 3j0a_A TOLL-like receptor 5; m 98.4 8.2E-09 2.8E-13 84.4 -3.6 130 14-162 23-153 (844)
102 3rgz_A Protein brassinosteroid 98.4 9.2E-09 3.1E-13 83.3 -3.5 39 13-51 149-188 (768)
103 2z66_A Variable lymphocyte rec 98.4 1.6E-09 5.3E-14 78.5 -7.4 64 77-145 197-261 (306)
104 3oja_A Leucine-rich immune mol 98.4 5.5E-09 1.9E-13 80.6 -4.7 40 10-51 29-68 (487)
105 1p9a_G Platelet glycoprotein I 98.4 6.1E-09 2.1E-13 75.1 -4.3 109 12-141 74-182 (290)
106 2wfh_A SLIT homolog 2 protein 98.4 6.1E-08 2.1E-12 65.8 0.7 108 14-142 30-137 (193)
107 1ziw_A TOLL-like receptor 3; i 98.4 1.8E-08 6.3E-13 80.2 -2.3 37 13-51 47-83 (680)
108 3oja_A Leucine-rich immune mol 98.4 1.1E-08 3.9E-13 78.8 -3.4 76 78-160 190-265 (487)
109 4eco_A Uncharacterized protein 98.3 3.2E-08 1.1E-12 78.6 -1.4 42 77-120 247-288 (636)
110 2z63_A TOLL-like receptor 4, v 98.3 2.5E-08 8.5E-13 77.7 -2.2 127 15-162 28-154 (570)
111 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 2.4E-08 8.1E-13 78.1 -2.5 41 12-55 350-390 (562)
112 3bz5_A Internalin-J, INLJ; leu 98.3 9.9E-08 3.4E-12 73.0 1.0 98 13-141 40-137 (457)
113 1w8a_A SLIT protein; signaling 98.3 1.7E-08 5.9E-13 68.4 -3.0 109 15-142 29-137 (192)
114 1ziw_A TOLL-like receptor 3; i 98.3 1.4E-08 4.7E-13 80.9 -4.1 83 15-115 25-107 (680)
115 3oja_B Anopheles plasmodium-re 98.3 2.2E-08 7.6E-13 78.9 -3.1 128 13-162 49-176 (597)
116 3bz5_A Internalin-J, INLJ; leu 98.3 1.4E-07 4.7E-12 72.2 1.2 34 13-51 83-116 (457)
117 2z81_A CD282 antigen, TOLL-lik 98.3 2.5E-06 8.4E-11 66.2 8.1 123 13-162 332-456 (549)
118 2xot_A Amphoterin-induced prot 98.3 4.1E-08 1.4E-12 72.8 -1.9 61 77-141 86-146 (361)
119 3e6j_A Variable lymphocyte rec 98.3 6.9E-08 2.4E-12 67.2 -0.9 110 12-142 61-170 (229)
120 1ogq_A PGIP-2, polygalacturona 98.3 2.1E-09 7.2E-14 78.3 -9.1 12 39-50 74-85 (313)
121 2o6r_A Variable lymphocyte rec 98.3 6.4E-08 2.2E-12 64.6 -1.2 111 14-145 27-137 (177)
122 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.7E-11 61.7 5.6 85 74-163 165-257 (267)
123 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 5.6E-08 1.9E-12 76.0 -2.5 16 129-145 471-486 (562)
124 1xku_A Decorin; proteoglycan, 98.2 4.6E-07 1.6E-11 66.1 1.9 12 40-51 99-110 (330)
125 4eco_A Uncharacterized protein 98.2 1E-06 3.5E-11 70.0 3.9 118 11-145 202-343 (636)
126 1ds9_A Outer arm dynein; leuci 98.1 3.3E-07 1.1E-11 62.2 0.2 103 13-137 68-180 (198)
127 2xwt_C Thyrotropin receptor; s 98.1 4.5E-09 1.5E-13 73.5 -9.5 63 77-145 103-169 (239)
128 2ft3_A Biglycan; proteoglycan, 98.1 2.4E-08 8.1E-13 73.1 -6.1 127 15-162 193-325 (332)
129 2ft3_A Biglycan; proteoglycan, 98.1 3.5E-08 1.2E-12 72.2 -5.5 64 77-146 215-278 (332)
130 1ogq_A PGIP-2, polygalacturona 98.1 3.8E-08 1.3E-12 71.6 -5.4 38 12-51 73-111 (313)
131 1dce_A Protein (RAB geranylger 98.1 1.4E-06 4.8E-11 68.4 2.6 105 12-138 460-567 (567)
132 2xwt_C Thyrotropin receptor; s 98.1 5.6E-08 1.9E-12 67.9 -4.9 65 77-145 125-193 (239)
133 3rw6_A Nuclear RNA export fact 98.0 1.5E-05 5E-10 56.9 7.0 87 36-139 165-259 (267)
134 2o6r_A Variable lymphocyte rec 98.0 1.8E-07 6.3E-12 62.3 -2.9 121 17-162 9-129 (177)
135 2wfh_A SLIT homolog 2 protein 98.0 3.7E-07 1.3E-11 61.9 -1.9 119 18-162 13-131 (193)
136 1w8a_A SLIT protein; signaling 97.9 1.3E-07 4.5E-12 64.0 -4.8 121 18-162 11-131 (192)
137 4b8c_D Glucose-repressible alc 97.9 1.2E-06 4E-11 70.8 -0.3 111 11-146 220-330 (727)
138 4b8c_D Glucose-repressible alc 97.9 5.1E-07 1.8E-11 72.8 -2.9 103 37-163 220-322 (727)
139 3g06_A SSPH2 (leucine-rich rep 97.9 4.5E-06 1.5E-10 66.3 2.1 62 78-149 240-301 (622)
140 3sb4_A Hypothetical leucine ri 97.9 7.6E-07 2.6E-11 65.1 -2.2 125 14-162 201-326 (329)
141 3g39_A Variable lymphocyte rec 97.7 5.7E-06 2E-10 54.8 -0.1 103 16-141 10-112 (170)
142 3sb4_A Hypothetical leucine ri 97.7 5E-06 1.7E-10 60.7 -0.6 36 14-51 24-59 (329)
143 2r9u_A Variable lymphocyte rec 97.6 7.5E-06 2.6E-10 54.5 -0.1 83 41-141 33-115 (174)
144 3g06_A SSPH2 (leucine-rich rep 97.6 6.5E-05 2.2E-09 59.7 4.9 110 14-162 180-289 (622)
145 1jl5_A Outer protein YOPM; leu 97.4 1.9E-05 6.4E-10 60.4 -0.1 12 40-51 152-163 (454)
146 3g39_A Variable lymphocyte rec 97.4 1.5E-05 5.2E-10 52.7 -1.1 85 14-116 29-113 (170)
147 2r9u_A Variable lymphocyte rec 97.3 1.6E-05 5.6E-10 52.8 -1.2 85 14-116 32-116 (174)
148 3cvr_A Invasion plasmid antige 97.3 0.00018 6.2E-09 56.6 4.3 10 16-25 60-69 (571)
149 1jl5_A Outer protein YOPM; leu 97.3 5.6E-05 1.9E-09 57.7 1.2 33 13-51 151-183 (454)
150 3cvr_A Invasion plasmid antige 97.1 9.2E-05 3.1E-09 58.2 0.9 66 79-149 180-247 (571)
151 2ifg_A High affinity nerve gro 97.0 9.3E-05 3.2E-09 54.2 -0.6 86 38-141 28-113 (347)
152 2ifg_A High affinity nerve gro 96.3 0.00069 2.4E-08 49.5 0.4 66 77-146 29-94 (347)
153 4ay9_X Follicle-stimulating ho 96.1 3.9E-05 1.3E-09 56.5 -7.6 36 15-52 30-65 (350)
154 4ay9_X Follicle-stimulating ho 95.9 0.00022 7.6E-09 52.4 -4.3 86 40-141 29-114 (350)
155 4gt6_A Cell surface protein; l 95.1 0.0077 2.7E-07 44.8 1.7 120 13-162 263-383 (394)
156 4fdw_A Leucine rich hypothetic 94.9 0.0015 5.2E-08 49.1 -2.6 13 128-140 297-309 (401)
157 4fdw_A Leucine rich hypothetic 92.8 0.02 6.7E-07 43.0 -0.0 58 77-141 298-355 (401)
158 4gt6_A Cell surface protein; l 92.0 0.017 5.9E-07 42.9 -1.1 100 38-162 262-362 (394)
159 4fs7_A Uncharacterized protein 91.1 0.0084 2.9E-07 44.6 -3.7 75 77-161 318-392 (394)
160 4h09_A Hypothetical leucine ri 91.0 0.043 1.5E-06 40.4 0.1 12 39-50 238-249 (379)
161 4h09_A Hypothetical leucine ri 86.9 0.11 3.6E-06 38.3 -0.3 104 13-140 238-342 (379)
162 4fs7_A Uncharacterized protein 80.7 0.35 1.2E-05 35.8 0.2 98 13-136 295-393 (394)
163 3rfe_A Platelet glycoprotein I 76.2 1.1 3.9E-05 27.7 1.6 35 80-116 32-66 (130)
164 3rfe_A Platelet glycoprotein I 75.2 0.84 2.9E-05 28.4 0.7 47 41-101 31-77 (130)
165 1s3a_A NADH-ubiquinone oxidore 29.6 87 0.003 18.2 4.1 39 43-85 19-58 (102)
166 2lz0_A Uncharacterized protein 25.7 9.5 0.00033 22.4 -0.8 35 77-114 18-52 (100)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=2.2e-16 Score=123.73 Aligned_cols=153 Identities=25% Similarity=0.374 Sum_probs=111.6
Q ss_pred HHHHhcCCCCcEEeecC----------CCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-----------
Q psy9589 8 LSLAENCPNLYYLCLSG----------CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL----------- 66 (163)
Q Consensus 8 ~~~~~~~~~L~~L~l~~----------~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~----------- 66 (163)
..+...+++|++|++++ |..+++..+..+...||+|++|+++ |..+++.++..++..+
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 34455677788888874 6667777777777778888888883 4477777777766532
Q ss_pred ----------CHHHHHHHHhcCCCCceEecCCCC-CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCE
Q psy9589 67 ----------LDSAVLSLAENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAK 135 (163)
Q Consensus 67 ----------~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~ 135 (163)
.+.++..+...+++|++|++++|. .+++..+..++..+++|+.|++++| .+++.++..+..++++|++
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCe
Confidence 124566667778888888887654 3777788888777888888888875 5887777777777888888
Q ss_pred EeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 136 MDLEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 136 L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
|++++| .+++.++..+...+++|+.|+
T Consensus 493 L~l~~n-~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 493 LEMRGC-CFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEESC-CCBHHHHHHHHHHCSSCCEEE
T ss_pred eeccCC-CCcHHHHHHHHHhcCccCeeE
Confidence 888888 478777777777788887663
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=7.3e-17 Score=118.47 Aligned_cols=145 Identities=20% Similarity=0.356 Sum_probs=82.6
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC-------------CHHHHHHHHhcCCCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL-------------LDSAVLSLAENCPNL 81 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~L 81 (163)
++|++|++++|. +++..+..+...+++|++|++++| .+++.....++... ++.++..+...+++|
T Consensus 93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 445555554433 344434444444555555555544 34433333332210 122233334467777
Q ss_pred ceEecCCCCCCCHHHHHHHHHhCC-CCCEEEecCCC-CCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCC
Q psy9589 82 YYLCLSGCSQLTDASLIVLAQRCH-QLHTLEVASCS-QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRL 159 (163)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 159 (163)
++|++++|..+++.++......+| +|++|++++|. .+++.++.....++++|++|++++|..+++..+..+ ..+++|
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L 249 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYL 249 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCC
Confidence 777777765677766666666777 77777777765 577666666666677777777777744666555544 356777
Q ss_pred ccC
Q psy9589 160 EKL 162 (163)
Q Consensus 160 ~~L 162 (163)
++|
T Consensus 250 ~~L 252 (336)
T 2ast_B 250 QHL 252 (336)
T ss_dssp CEE
T ss_pred CEe
Confidence 665
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=2.6e-16 Score=123.36 Aligned_cols=146 Identities=26% Similarity=0.444 Sum_probs=72.4
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEe--------cCCCCCChHHHHHHHhcC-------------CHH
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--------ASCSQFTDTGFQALARGL-------------LDS 69 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~-------------~~~ 69 (163)
...+++|++|++++| +++..+..+...+++|++|++ .+|..+++.++..++..+ ++.
T Consensus 310 ~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~ 387 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387 (594)
T ss_dssp HTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred HhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence 345555555555554 345555555555666666666 233455555555554432 344
Q ss_pred HHHHHHhcCCCCceEecC-----CCCCCC----HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccC
Q psy9589 70 AVLSLAENCPNLYYLCLS-----GCSQLT----DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEE 140 (163)
Q Consensus 70 ~~~~~~~~~~~L~~L~l~-----~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 140 (163)
.+..+...+|+|++|+++ +|..++ +.++..+...|++|+.|++++ .+++.++..+.+.+++|+.|++++
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccC
Confidence 444455455566666655 344444 445554444555555555533 344444444444444444444444
Q ss_pred CCCCChHHHHHHHhCCCCCcc
Q psy9589 141 CVLITDATLIHLALGCPRLEK 161 (163)
Q Consensus 141 ~~~l~~~~~~~l~~~~~~L~~ 161 (163)
| .+++.++..+...|++|+.
T Consensus 466 ~-~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 466 A-GDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp C-CSSHHHHHHHHHHCTTCCE
T ss_pred C-CCcHHHHHHHHhcCCCcCE
Confidence 4 3444444444444444443
No 4
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.73 E-value=6.7e-18 Score=113.18 Aligned_cols=104 Identities=21% Similarity=0.358 Sum_probs=75.2
Q ss_pred cCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHh---CCCCCEEEecCCCCC
Q psy9589 42 QLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEVASCSQF 118 (163)
Q Consensus 42 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i 118 (163)
+|++|++++|. +++.|+..+. .|++|++|+|++|..++|.++..++.. +++|++|+|++|+.|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-------------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-------------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-------------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-------------CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 57888888874 7777766552 577888888888877888888777742 567888888888778
Q ss_pred CHHHHHHHHHcCCCCCEEeccCCCCCChHH--HHHHHhCCCCCc
Q psy9589 119 TDTGFQALARNCRLLAKMDLEECVLITDAT--LIHLALGCPRLE 160 (163)
Q Consensus 119 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~ 160 (163)
|+.++..+. ++++|++|++++|+.|++.+ +..+.+.+|+++
T Consensus 128 TD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 128 TDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 888877764 47888888888887787754 445556677654
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.73 E-value=7.1e-18 Score=113.05 Aligned_cols=109 Identities=12% Similarity=0.195 Sum_probs=93.1
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD 94 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 94 (163)
.+|++|++++|. ++|.++..+ ..|++|++|++++|..+++.|+..++.. ...+++|++|++++|..++|
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~---------~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL---------ENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC---------HHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc---------ccccCCCCEEEcCCCCcCCH
Confidence 369999999987 999999888 5799999999999999999998888752 00246899999999999999
Q ss_pred HHHHHHHHhCCCCCEEEecCCCCCCHHH--HHHHHHcCCCCCE
Q psy9589 95 ASLIVLAQRCHQLHTLEVASCSQFTDTG--FQALARNCRLLAK 135 (163)
Q Consensus 95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~--~~~l~~~~~~L~~ 135 (163)
.++..++ .|++|++|++++|+.+++.+ ...+.+..|+++.
T Consensus 130 ~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 130 KGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999998 79999999999999999876 3445566888763
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.2e-16 Score=117.34 Aligned_cols=151 Identities=26% Similarity=0.428 Sum_probs=106.1
Q ss_pred HHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcC--------------CHHHHHHH
Q psy9589 9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL--------------LDSAVLSL 74 (163)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------~~~~~~~~ 74 (163)
.....+++|++|++++|. +++.....+.. +++|++|++++|..+++.++......+ +..++..+
T Consensus 112 ~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHTTBCCCSEEECTTCB-CCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcc-cCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 344556666666666653 45544444433 666666666666555555444433322 33445556
Q ss_pred HhcCC-CCceEecCCCC-CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHH
Q psy9589 75 AENCP-NLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHL 152 (163)
Q Consensus 75 ~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 152 (163)
...+| +|++|+++++. .+++..+......+++|++|++++|..+++..+..+ ..+++|++|++++|..+++.++..+
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 66899 99999999976 688888888877899999999999876887776655 4579999999999987888766454
Q ss_pred HhCCCCCccCC
Q psy9589 153 ALGCPRLEKLI 163 (163)
Q Consensus 153 ~~~~~~L~~L~ 163 (163)
..+++|+.|+
T Consensus 269 -~~~~~L~~L~ 278 (336)
T 2ast_B 269 -GEIPTLKTLQ 278 (336)
T ss_dssp -GGCTTCCEEE
T ss_pred -hcCCCCCEEe
Confidence 4689998764
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=1.4e-15 Score=119.31 Aligned_cols=152 Identities=28% Similarity=0.383 Sum_probs=124.6
Q ss_pred HHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecC----------CCCCChHHHHHHHhcC------------
Q psy9589 9 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS----------CSQFTDTGFQALARGL------------ 66 (163)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~----------~~~~~~~~~~~l~~~~------------ 66 (163)
.+...+++|++|++++ .+.+..+..+...|++|++|++++ |..+++.++..+...+
T Consensus 312 ~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 312 TLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 4456788888888874 457788888888899999999994 7889998888877654
Q ss_pred -CHHHHHHHHhcCCCCceEecCC---CCCCCH----HHHHHHHHhCCCCCEEEecCCC-CCCHHHHHHHHHcCCCCCEEe
Q psy9589 67 -LDSAVLSLAENCPNLYYLCLSG---CSQLTD----ASLIVLAQRCHQLHTLEVASCS-QFTDTGFQALARNCRLLAKMD 137 (163)
Q Consensus 67 -~~~~~~~~~~~~~~L~~L~l~~---~~~~~~----~~~~~l~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~ 137 (163)
++..+..+...+++|++|++++ ++.+++ .++..+..+|++|++|+++.|. .+++.++..+.+.+++|++|+
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 6777788887899999999973 455664 5777777789999999997755 488888888888899999999
Q ss_pred ccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 138 LEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 138 l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
+++| .+++.++..+...|++|++|+
T Consensus 470 L~~n-~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 470 LGYV-GESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp ECSC-CSSHHHHHHHHTCCTTCCEEE
T ss_pred ccCC-CCCHHHHHHHHhcCcccCeee
Confidence 9998 799988888888999998774
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.6e-15 Score=118.91 Aligned_cols=89 Identities=25% Similarity=0.404 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH
Q psy9589 69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT 148 (163)
Q Consensus 69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 148 (163)
.++..+.+.+++|++|++++ .+++.++..++..+++|+.|++++| .+++.++..++.++++|+.|++++| .+++.+
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~ 497 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKA 497 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-SCCHHH
T ss_pred hHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-CCcHHH
Confidence 33444444455555555533 3444444444444455555555443 2444444444444455555555554 334444
Q ss_pred HHHHHhCCCCCcc
Q psy9589 149 LIHLALGCPRLEK 161 (163)
Q Consensus 149 ~~~l~~~~~~L~~ 161 (163)
+..+...+++|+.
T Consensus 498 ~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 498 LLANASKLETMRS 510 (594)
T ss_dssp HHHTGGGGGGSSE
T ss_pred HHHHHHhCCCCCE
Confidence 4444444444443
No 9
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.59 E-value=2.5e-13 Score=92.16 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=108.0
Q ss_pred hhHHhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHH---hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcC
Q psy9589 2 DIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENC 78 (163)
Q Consensus 2 d~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 78 (163)
|+-+.+.......++|++|+|++|..+++.+...+.. ..++|++|++++| .+++.|+..++. .....
T Consensus 23 ~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~---------~L~~n 92 (185)
T 1io0_A 23 DVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAE---------MLKVN 92 (185)
T ss_dssp CHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHH---------HHHHC
T ss_pred HHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHH---------HHHhC
Confidence 3445567778889999999999974689988887665 4688999999998 799998887765 23467
Q ss_pred CCCceEecCCCCCCCHHHHHHHHHh---CCCCCEEEe--cCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHH
Q psy9589 79 PNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEV--ASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDAT 148 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l--~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~ 148 (163)
+.|++|+|+++ .+++.+...++.. .+.|++|++ ++ +.+++++...+++ ..++|++|++++| .+++.+
T Consensus 93 ~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 93 NTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp SSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred CCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 89999999995 7999998888754 578999999 65 5799988666544 4689999999998 787764
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.52 E-value=2.7e-13 Score=101.35 Aligned_cols=134 Identities=25% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhc-----C------------CHHHHHHH---
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG-----L------------LDSAVLSL--- 74 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~------------~~~~~~~~--- 74 (163)
++|++|+|++|. +++..+..+...+++|++|++++| .+++.+...++.. + ++.++..+
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 577777777654 566666666666667777777776 6666666655431 0 22222222
Q ss_pred HhcCCCCceEecCCCCCCCHHHHHHHHH---hCCCCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHH
Q psy9589 75 AENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDAT 148 (163)
Q Consensus 75 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~ 148 (163)
...+++|++|+++++ .+++.++..++. .+++|+.|++++| .+++.+...++. ..++|++|++++| .+++.+
T Consensus 179 L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g 255 (372)
T 3un9_A 179 LAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEG 255 (372)
T ss_dssp HHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHH
T ss_pred HhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHH
Confidence 234455555555553 355554444332 2345555555553 455544443332 2455555555555 555555
Q ss_pred HHHHH
Q psy9589 149 LIHLA 153 (163)
Q Consensus 149 ~~~l~ 153 (163)
+..+.
T Consensus 256 ~~~L~ 260 (372)
T 3un9_A 256 RQVLR 260 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=8.1e-13 Score=98.86 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=22.3
Q ss_pred hcCCCCcEEeecCCCCCChHH---HHHHHHhCCcCCEEEecCCCCCChHHH
Q psy9589 12 ENCPNLYYLCLSGCSQLTDAS---LIVLAQRCHQLHTLEVASCSQFTDTGF 59 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~---l~~i~~~~~~L~~L~l~~~~~~~~~~~ 59 (163)
..+++|++|++++|. +++.. +......+++|++|++++| .++..+.
T Consensus 91 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~ 139 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAG 139 (386)
T ss_dssp TTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHH
T ss_pred hhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHH
Confidence 455666666666644 23321 2222344566666666555 3443333
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=3.5e-12 Score=95.38 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=25.6
Q ss_pred HhcCCCCcEEeecCCC--CCC---hHHHHHHH---HhCCcCCEEEecCCCCCChHHHH
Q psy9589 11 AENCPNLYYLCLSGCS--QLT---DASLIVLA---QRCHQLHTLEVASCSQFTDTGFQ 60 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~--~~~---~~~l~~i~---~~~~~L~~L~l~~~~~~~~~~~~ 60 (163)
...+++|++|++++|. .++ +..+..+. ..+++|++|++++| .++..++.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 112 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQE 112 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHH
Confidence 3456677777776652 122 22333322 34666777777765 45554433
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=3e-12 Score=97.55 Aligned_cols=141 Identities=25% Similarity=0.270 Sum_probs=101.1
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHH---HHhCCcCCEEEecCCCCCChHHHHHHHhcC-----------------C---H
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVL---AQRCHQLHTLEVASCSQFTDTGFQALARGL-----------------L---D 68 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-----------------~---~ 68 (163)
..+++|++|++++| .+++.....+ ...+++|++|++++| .+++.+...++... + .
T Consensus 253 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 253 HPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred cCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 35789999999886 4677664443 345889999999887 67777776665431 1 2
Q ss_pred HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHh----CCCCCEEEecCCCCCCHHHHHHHH---HcCCCCCEEeccCC
Q psy9589 69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR----CHQLHTLEVASCSQFTDTGFQALA---RNCRLLAKMDLEEC 141 (163)
Q Consensus 69 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~ 141 (163)
..+......+++|++|+++++ .+++.++..++.. +++|++|++++| .+++.++..++ ..+++|++|++++|
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 234445567889999999885 6888777776643 578999999885 68876655543 34789999999998
Q ss_pred CCCChHHHHHHHhCCC
Q psy9589 142 VLITDATLIHLALGCP 157 (163)
Q Consensus 142 ~~l~~~~~~~l~~~~~ 157 (163)
.+++.++..+.+.++
T Consensus 409 -~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 409 -CLGDAGILQLVESVR 423 (461)
T ss_dssp -SCCHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHhc
Confidence 888887777665443
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=2.2e-12 Score=96.40 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=49.8
Q ss_pred HhcCCCCceEecCCCCCCCHHHHHHHHH---hCCCCCEEEecCCCCCCHHHHHHHHHcC-CC---CCEEe--ccCCCCCC
Q psy9589 75 AENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGFQALARNC-RL---LAKMD--LEECVLIT 145 (163)
Q Consensus 75 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~---L~~L~--l~~~~~l~ 145 (163)
....++|++|+++++ .+++.+...++. .+++|++|++++| .+++.+...+.+.. +. |+.+. +..+ .++
T Consensus 207 L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~ 283 (372)
T 3un9_A 207 LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVS 283 (372)
T ss_dssp GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC-----CH
T ss_pred HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccC
Confidence 356789999999995 699988777654 5799999999995 69999988876532 22 77776 6664 555
Q ss_pred hH
Q psy9589 146 DA 147 (163)
Q Consensus 146 ~~ 147 (163)
++
T Consensus 284 ~~ 285 (372)
T 3un9_A 284 EY 285 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.44 E-value=2e-12 Score=98.50 Aligned_cols=139 Identities=24% Similarity=0.317 Sum_probs=90.7
Q ss_pred HHHHhcCCCCcEEeecCCCCCChHHHHH---HHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCC----C
Q psy9589 8 LSLAENCPNLYYLCLSGCSQLTDASLIV---LAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCP----N 80 (163)
Q Consensus 8 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~---i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~ 80 (163)
..+...+++|++|++++|. +++..... ....+++|++|++++| .+++.++..+.. .++ +
T Consensus 21 ~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~------------~l~~~~~~ 86 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ------------GLQTPSCK 86 (461)
T ss_dssp HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH------------TTCSTTCC
T ss_pred HHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHH------------HHhhCCCc
Confidence 3445567777777777755 55554333 3445677777777775 455554444433 444 6
Q ss_pred CceEecCCCCCCCHHHHHHH---HHhCCCCCEEEecCCCCCCHHHHHHHHHc----CCCCCEEeccCCCCCChHH---HH
Q psy9589 81 LYYLCLSGCSQLTDASLIVL---AQRCHQLHTLEVASCSQFTDTGFQALARN----CRLLAKMDLEECVLITDAT---LI 150 (163)
Q Consensus 81 L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~---~~ 150 (163)
|++|+++++ .+++.++..+ ...+++|++|+++++ .+++.++..+.+. .++|++|++++| .+++.. +.
T Consensus 87 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~ 163 (461)
T 1z7x_W 87 IQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLA 163 (461)
T ss_dssp CCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred eeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHH
Confidence 999999886 4776543333 346789999999885 4887777666553 357999999998 777644 34
Q ss_pred HHHhCCCCCccCC
Q psy9589 151 HLALGCPRLEKLI 163 (163)
Q Consensus 151 ~l~~~~~~L~~L~ 163 (163)
..+..+++|++|+
T Consensus 164 ~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 164 SVLRAKPDFKELT 176 (461)
T ss_dssp HHHHHCTTCCEEE
T ss_pred HHHhhCCCCCEEE
Confidence 4455678888763
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.40 E-value=1.8e-11 Score=82.91 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=96.4
Q ss_pred hHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHH---hCCC
Q psy9589 30 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQ 106 (163)
Q Consensus 30 ~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~ 106 (163)
+..+..+...++.|++|++++|..+++.|+..++. .....+.|++|+|+++ .+++.+...++. ..++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~---------~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~ 94 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE---------ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNT 94 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHH---------HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH---------HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCC
Confidence 35556677789999999999976899998887765 2346789999999995 699998877764 4589
Q ss_pred CCEEEecCCCCCCHHHHHHHHHc---CCCCCEEec--cCCCCCChHHHHHHH---hCCCCCccCC
Q psy9589 107 LHTLEVASCSQFTDTGFQALARN---CRLLAKMDL--EECVLITDATLIHLA---LGCPRLEKLI 163 (163)
Q Consensus 107 L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l--~~~~~l~~~~~~~l~---~~~~~L~~L~ 163 (163)
|++|+|++| .+++.++..+++. .+.|++|++ ++| .+++++...+. +.++.|++|+
T Consensus 95 L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 95 LKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred cCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEe
Confidence 999999985 7999998888654 579999999 787 99998755444 4567777653
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=9e-12 Score=92.53 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=71.7
Q ss_pred CCCcEEeecCCCCCCh---HHHHHHHHhC-CcCCEEEecCCCCCChHHHHHHHhc----C----------------CHHH
Q psy9589 15 PNLYYLCLSGCSQLTD---ASLIVLAQRC-HQLHTLEVASCSQFTDTGFQALARG----L----------------LDSA 70 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~---~~l~~i~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~----~----------------~~~~ 70 (163)
++|++|++++|. +++ ..+......+ ++|++|++++| .++..+...++.. + ....
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 677777777754 333 2222333334 66777777766 4554444443321 0 1222
Q ss_pred HHHHHhcCC-CCceEecCCCCCCCHHHHHH---HHHhC-CCCCEEEecCCCCCCHHHHHHHHH---c-CCCCCEEeccCC
Q psy9589 71 VLSLAENCP-NLYYLCLSGCSQLTDASLIV---LAQRC-HQLHTLEVASCSQFTDTGFQALAR---N-CRLLAKMDLEEC 141 (163)
Q Consensus 71 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~---l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~---~-~~~L~~L~l~~~ 141 (163)
+.......+ +|++|+++++ .+++.+... ....+ ++|++|++++| .+++.+...++. . .++|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 223333444 6777777774 344333322 22244 37777777764 466544333322 2 346777777776
Q ss_pred CCCChH---HHHHHHhCCCCCccC
Q psy9589 142 VLITDA---TLIHLALGCPRLEKL 162 (163)
Q Consensus 142 ~~l~~~---~~~~l~~~~~~L~~L 162 (163)
.+++. .+..+.+.+++|+.|
T Consensus 236 -~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 236 -CLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp -CCCCCCHHHHHHTTTTTTTCSEE
T ss_pred -CCCcHHHHHHHHHHhcCCCccEE
Confidence 55553 333333445555544
No 18
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=1e-10 Score=86.87 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=20.1
Q ss_pred cCC-CCcEEeecCCCCCChHHH---HHHHHh-CCcCCEEEecCCCCCChH
Q psy9589 13 NCP-NLYYLCLSGCSQLTDASL---IVLAQR-CHQLHTLEVASCSQFTDT 57 (163)
Q Consensus 13 ~~~-~L~~L~l~~~~~~~~~~l---~~i~~~-~~~L~~L~l~~~~~~~~~ 57 (163)
.++ +|++|++++|. +++... ..+... +++|++|++++| .+++.
T Consensus 48 ~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~ 95 (362)
T 3goz_A 48 NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN-FLSYK 95 (362)
T ss_dssp TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGS
T ss_pred hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC-cCChH
Confidence 445 56666666643 333222 222222 256666666665 34433
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=2.1e-12 Score=84.30 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=92.4
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
...++|++|++++|. +++..+......+++|++|++++| .++.. .. ...+++|++|+++++ .
T Consensus 14 ~~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-------------~~~l~~L~~L~Ls~n-~ 75 (149)
T 2je0_A 14 RTPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--AN-------------LPKLNKLKKLELSDN-R 75 (149)
T ss_dssp CCGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TT-------------CCCCTTCCEEECCSS-C
T ss_pred CCCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hh-------------hhcCCCCCEEECCCC-c
Confidence 345889999999975 443233334466899999999998 55443 11 136789999999996 4
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHH--HHHHhCCCCCccCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATL--IHLALGCPRLEKLI 163 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~L~~L~ 163 (163)
++.. +......+++|+.|+++++ .+++.........+++|++|++++| .++.... ...+..+++|+.||
T Consensus 76 i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 76 VSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred ccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence 5543 3445547999999999995 5776433234466899999999998 6665322 24567899998875
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=1.8e-12 Score=88.58 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=47.5
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
.+++|++|+++++ .+++.....+. .+++|+.|++++|..+++-. ....+++|+.|++++| .+++.. ....+
T Consensus 110 ~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~---~l~~l 180 (197)
T 4ezg_A 110 GLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR---GIEDF 180 (197)
T ss_dssp TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT---TGGGC
T ss_pred CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH---HhccC
Confidence 4677777777774 45554455554 67777777777754355432 1345677888888777 555521 23466
Q ss_pred CCCccC
Q psy9589 157 PRLEKL 162 (163)
Q Consensus 157 ~~L~~L 162 (163)
++|+.|
T Consensus 181 ~~L~~L 186 (197)
T 4ezg_A 181 PKLNQL 186 (197)
T ss_dssp SSCCEE
T ss_pred CCCCEE
Confidence 777655
No 21
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.22 E-value=8.3e-10 Score=75.17 Aligned_cols=130 Identities=13% Similarity=0.187 Sum_probs=101.3
Q ss_pred HhHHHHHhcCCCCcEEeecCCCCCChHHHHHHHHh---CCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCC
Q psy9589 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQR---CHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNL 81 (163)
Q Consensus 5 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L 81 (163)
+.+..+...-+.|++|+|+++..+.+.+.+.++.. -..|++|+|++| .+++.|...++. ..+..+.|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~---------aL~~N~tL 100 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIE---------LIETSPSL 100 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHH---------HHHHCSSC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHH---------HHhcCCcc
Confidence 45666777889999999988657899888877754 457999999997 899998887765 34566889
Q ss_pred ceEecCCCCCCCHHHHHHHHHhC---CCCCEEEecCC-C-CCCHHHHHHHH---HcCCCCCEEeccCCCCCCh
Q psy9589 82 YYLCLSGCSQLTDASLIVLAQRC---HQLHTLEVASC-S-QFTDTGFQALA---RNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~-~-~i~~~~~~~l~---~~~~~L~~L~l~~~~~l~~ 146 (163)
++|+|++ ..+++.+...+++.+ +.|++|+|+++ . .+.+.+..+++ +.-+.|+.|+++.+ .+..
T Consensus 101 ~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~-~~g~ 171 (197)
T 1pgv_A 101 RVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA-SMEA 171 (197)
T ss_dssp CEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC-CHHH
T ss_pred CeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC-CccH
Confidence 9999999 579999999998765 57999999864 2 57777654443 34589999999986 4443
No 22
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.18 E-value=3.6e-11 Score=89.48 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=37.7
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHH--hCCCCCEEEecCCCCCCHHHHHHHHH---cCCCCCEEeccCCCCCChHHHHHH
Q psy9589 78 CPNLYYLCLSGCSQLTDASLIVLAQ--RCHQLHTLEVASCSQFTDTGFQALAR---NCRLLAKMDLEECVLITDATLIHL 152 (163)
Q Consensus 78 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l 152 (163)
+|+|++|++.+| .+.+.+...++. .+|+|++|+|+. +.+++.+...++. .+++|+.|++++| .++++.+..+
T Consensus 251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHH
T ss_pred CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHH
Confidence 455555555553 344444444442 245566666654 3455555444432 2456666666665 5665555554
Q ss_pred Hh
Q psy9589 153 AL 154 (163)
Q Consensus 153 ~~ 154 (163)
.+
T Consensus 328 ~~ 329 (362)
T 2ra8_A 328 QK 329 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=3.2e-12 Score=85.01 Aligned_cols=131 Identities=20% Similarity=0.223 Sum_probs=89.6
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
...++|++|++++|. +++..+......+++|++|++++| .++.. .. ...+++|++|+++++.
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~-------------~~~l~~L~~L~Ls~N~- 82 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISV--SN-------------LPKLPKLKKLELSENR- 82 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SS-------------CCCCSSCCEEEEESCC-
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hh-------------hccCCCCCEEECcCCc-
Confidence 345899999999976 443233333466899999999998 45443 11 1267899999999964
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHH--HHHHHhCCCCCccCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDAT--LIHLALGCPRLEKLI 163 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~~L~ 163 (163)
+.+. +......+++|+.|++++| .+++.........+++|+.|++++| .++... ....+..+|+|+.|+
T Consensus 83 l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 83 IFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEET
T ss_pred CchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEec
Confidence 5442 3444547999999999986 5665321122355899999999998 665432 124567899998775
No 24
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=1e-09 Score=81.67 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=95.3
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEec
Q psy9589 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCL 86 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 86 (163)
+..+...+|+|++|.++++..+.-.. + ..++|++|++..| .++..++..++. ..+|+|++|+|
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~-~l~~~~l~~l~~-----------~~lp~L~~L~L 226 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISG-GLPDSVVEDILG-----------SDLPNLEKLVL 226 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECS-BCCHHHHHHHHH-----------SBCTTCCEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc---c--cCCCCcEEEEecC-CCChHHHHHHHH-----------ccCCCCcEEEE
Confidence 44567789999999998863332211 1 2789999999876 678777766653 26899999998
Q ss_pred CCCCC--CCHH---HHHHHH--HhCCCCCEEEecCCCCCCHHHHHHHHH--cCCCCCEEeccCCCCCChHHHHHHHhC--
Q psy9589 87 SGCSQ--LTDA---SLIVLA--QRCHQLHTLEVASCSQFTDTGFQALAR--NCRLLAKMDLEECVLITDATLIHLALG-- 155 (163)
Q Consensus 87 ~~~~~--~~~~---~~~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~-- 155 (163)
+.... ..+. .+..+. ..+|+|+.|++.+| .+++.+...+++ .+|+|++|++++| .+++.+...+...
T Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD 304 (362)
T ss_dssp ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH
T ss_pred eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc
Confidence 63211 1111 111121 25899999999885 577666666665 4789999999997 8999887777643
Q ss_pred -CCCCccCC
Q psy9589 156 -CPRLEKLI 163 (163)
Q Consensus 156 -~~~L~~L~ 163 (163)
+++|+.|+
T Consensus 305 ~l~~L~~L~ 313 (362)
T 2ra8_A 305 KIKHLKFIN 313 (362)
T ss_dssp HHTTCSEEE
T ss_pred cCCcceEEE
Confidence 67777653
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.05 E-value=5.8e-11 Score=80.96 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=89.8
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++|++|+++++.. ++.. -...+++|++|++++| .++... . ...+++|++|+++++ .+
T Consensus 42 ~l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~l~~n-~~~~~~--~-------------l~~l~~L~~L~l~~n-~l 100 (197)
T 4ezg_A 42 QMNSLTYITLANINV-TDLT---GIEYAHNIKDLTINNI-HATNYN--P-------------ISGLSNLERLRIMGK-DV 100 (197)
T ss_dssp HHHTCCEEEEESSCC-SCCT---TGGGCTTCSEEEEESC-CCSCCG--G-------------GTTCTTCCEEEEECT-TC
T ss_pred hcCCccEEeccCCCc-cChH---HHhcCCCCCEEEccCC-CCCcch--h-------------hhcCCCCCEEEeECC-cc
Confidence 468999999999654 3311 2466999999999998 444321 1 236899999999995 56
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
++.....+. .+++|++|++++| .+++.....+ ..+++|++|++++|..+++-. ....+++|+.|+
T Consensus 101 ~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~ 165 (197)
T 4ezg_A 101 TSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLN 165 (197)
T ss_dssp BGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEE
T ss_pred CcccChhhc-CCCCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH---hhcCCCCCCEEE
Confidence 654455554 7899999999995 6777555545 468999999999994366632 346788888763
No 26
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.02 E-value=1e-08 Score=69.82 Aligned_cols=128 Identities=13% Similarity=0.179 Sum_probs=94.9
Q ss_pred CCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHH-
Q psy9589 24 GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ- 102 (163)
Q Consensus 24 ~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~- 102 (163)
.+..--+..+..+...-+.|++|+++++..+.+.|+..++.. .+....|++|+|+++ .++|.+...++.
T Consensus 24 ~N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~a---------L~~N~~L~~L~L~~n-~igd~ga~alA~a 93 (197)
T 1pgv_A 24 DNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEA---------ACNSKHIEKFSLANT-AISDSEARGLIEL 93 (197)
T ss_dssp ---CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHH---------HTTCSCCCEEECTTS-CCBHHHHTTHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHH---------HhhCCCcCEEEccCC-CCChHHHHHHHHH
Confidence 334334466777777889999999998668999998888752 235678999999995 699999877764
Q ss_pred --hCCCCCEEEecCCCCCCHHHHHHHHHcC---CCCCEEeccCCC--CCChHH---HHHHHhCCCCCccC
Q psy9589 103 --RCHQLHTLEVASCSQFTDTGFQALARNC---RLLAKMDLEECV--LITDAT---LIHLALGCPRLEKL 162 (163)
Q Consensus 103 --~~~~L~~L~l~~~~~i~~~~~~~l~~~~---~~L~~L~l~~~~--~l~~~~---~~~l~~~~~~L~~L 162 (163)
.-+.|++|+|++ +.|++.+..++++.+ +.|++|+++++. .+.+.+ +.+..+.-+.|++|
T Consensus 94 L~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 94 IETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp HHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence 358899999998 579999998887754 689999999753 567754 33444455556544
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=1.3e-09 Score=70.90 Aligned_cols=109 Identities=24% Similarity=0.324 Sum_probs=77.0
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. ++. .....+++|++|++++| .++... ......+++|++|+++++ .
T Consensus 39 ~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~Ls~n-~i~~~~-------------~~~~~~l~~L~~L~ls~N-~ 99 (149)
T 2je0_A 39 DEFEELEFLSTINVGL-TSI---ANLPKLNKLKKLELSDN-RVSGGL-------------EVLAEKCPNLTHLNLSGN-K 99 (149)
T ss_dssp TTCTTCCEEECTTSCC-CCC---TTCCCCTTCCEEECCSS-CCCSCT-------------HHHHHHCTTCCEEECTTS-C
T ss_pred hhcCCCcEEECcCCCC-CCc---hhhhcCCCCCEEECCCC-cccchH-------------HHHhhhCCCCCEEECCCC-c
Confidence 5689999999999764 433 33456899999999998 454321 122336899999999996 4
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHH--HHHHHcCCCCCEEeccC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGF--QALARNCRLLAKMDLEE 140 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~--~~l~~~~~~L~~L~l~~ 140 (163)
+++.........+++|++|++++| .+++... ......+++|+.|++++
T Consensus 100 i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 100 IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 666433233348999999999996 4654332 23456689999999864
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.95 E-value=1.8e-09 Score=79.33 Aligned_cols=121 Identities=19% Similarity=0.193 Sum_probs=72.0
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++|++|++++|....... ...+++|++|++++| .++... ....+++|++|+++++ .+
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~---------------~~~~l~~L~~L~l~~n-~l 277 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN-QISDIN---------------AVKDLTKLKMLNVGSN-QI 277 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCCG---------------GGTTCTTCCEEECCSS-CC
T ss_pred cCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCC-ccCCCh---------------hHhcCCCcCEEEccCC-cc
Confidence 45666666666654322221 344666666666665 333210 1235678888888875 34
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
++. .. ...+++|+.|++++| .+++.....+ ..+++|++|++++| .++.... ...+++|++|+
T Consensus 278 ~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~ 339 (347)
T 4fmz_A 278 SDI--SV-LNNLSQLNSLFLNNN-QLGNEDMEVI-GGLTNLTTLFLSQN-HITDIRP---LASLSKMDSAD 339 (347)
T ss_dssp CCC--GG-GGGCTTCSEEECCSS-CCCGGGHHHH-HTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEES
T ss_pred CCC--hh-hcCCCCCCEEECcCC-cCCCcChhHh-hccccCCEEEccCC-ccccccC---hhhhhccceee
Confidence 432 22 336788888888885 4665554444 45788888888888 5554321 45777777664
No 29
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.94 E-value=5.6e-10 Score=81.23 Aligned_cols=67 Identities=24% Similarity=0.201 Sum_probs=34.8
Q ss_pred cCCCCceEecCCCCCCCHH-HH-HHH-HHhCCCCCEEEecCCCCCCH--HHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 77 NCPNLYYLCLSGCSQLTDA-SL-IVL-AQRCHQLHTLEVASCSQFTD--TGFQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~-~~-~~l-~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
.+++|++|+++++. +... .+ ..+ ...+++|++|+++++ .++. .....+...+++|++|++++| .++.
T Consensus 171 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 171 VFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp CCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCS
T ss_pred cCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCc
Confidence 45667777776643 3322 11 122 135667777777664 4542 122234445667777777766 4443
No 30
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=5.1e-10 Score=74.92 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=70.0
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++|++|++++|.. +. +..+....|+|++|++++| .++.. .. ...+++|++|+++++ .+
T Consensus 17 ~~~~L~~L~l~~n~l-~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~-------------l~~l~~L~~L~Ls~N-~l 76 (176)
T 1a9n_A 17 NAVRDRELDLRGYKI-PV--IENLGATLDQFDAIDFSDN-EIRKL--DG-------------FPLLRRLKTLLVNNN-RI 76 (176)
T ss_dssp CTTSCEEEECTTSCC-CS--CCCGGGGTTCCSEEECCSS-CCCEE--CC-------------CCCCSSCCEEECCSS-CC
T ss_pred CcCCceEEEeeCCCC-ch--hHHhhhcCCCCCEEECCCC-CCCcc--cc-------------cccCCCCCEEECCCC-cc
Confidence 467788888887643 32 1234444568888888886 44432 11 125667777777774 34
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH--HHHHHHhCCCCCccCC
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA--TLIHLALGCPRLEKLI 163 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L~ 163 (163)
+... ..+...+++|+.|+++++ .+++-........+++|++|++++| .++.. ....+...+|+|+.||
T Consensus 77 ~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 77 CRIG-EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccC-cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeC
Confidence 4221 122236777777777764 3443221112234677777777776 44321 1122345667776654
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.87 E-value=1.9e-10 Score=83.71 Aligned_cols=134 Identities=18% Similarity=0.131 Sum_probs=86.8
Q ss_pred cCCCCcEEeecCCCCCChHHHHHH-HHhCCcCCEEEecCCCCCChH--HHHHHHhcCCHHHHHHHHhcCCCCceEecCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVL-AQRCHQLHTLEVASCSQFTDT--GFQALARGLLDSAVLSLAENCPNLYYLCLSGC 89 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 89 (163)
.+++|++|++++|.. +...-..+ ...+++|++|++++| .++.. .+..+.. ...++|++|+++++
T Consensus 93 ~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~-----------~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQ-----------WLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHT-----------TCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHH-----------hhcCCCcEEEeeCC
Confidence 589999999999763 32111111 256899999999997 44432 1111111 12389999999985
Q ss_pred CCCCHHHHHHHHHhCCCCCEEEecCCCCCCHH-HHH-HH-HHcCCCCCEEeccCCCCCCh--HHHHHHHhCCCCCccCC
Q psy9589 90 SQLTDASLIVLAQRCHQLHTLEVASCSQFTDT-GFQ-AL-ARNCRLLAKMDLEECVLITD--ATLIHLALGCPRLEKLI 163 (163)
Q Consensus 90 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~-~l-~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~ 163 (163)
.+.......+. .+++|++|+++++. +... ++. .+ ...+++|++|++++| .++. .....++..+++|+.|+
T Consensus 160 -~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 160 -HSLNFSCEQVR-VFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp -SCCCCCTTTCC-CCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEE
T ss_pred -CCccchHHHhc-cCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEE
Confidence 45443323333 78999999999864 4432 222 22 156899999999998 7773 33446667888888764
No 32
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.86 E-value=2.3e-09 Score=77.34 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=17.2
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|....-.. ...+++|++|++++|
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDEN 100 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred cCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCC
Confidence 35566666666544221111 234555566666554
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.85 E-value=7.5e-10 Score=73.41 Aligned_cols=109 Identities=27% Similarity=0.308 Sum_probs=77.4
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|. ++.. .....+++|++|++++| .++.. + ..+...+++|++|+++++ .
T Consensus 46 ~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~------------~~~~~~l~~L~~L~Ls~N-~ 106 (168)
T 2ell_A 46 AEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-L------------DMLAEKLPNLTHLNLSGN-K 106 (168)
T ss_dssp GGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-C------------CHHHHHCTTCCEEECBSS-S
T ss_pred HhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-H------------HHHHhhCCCCCEEeccCC-c
Confidence 467999999999976 4443 33456899999999998 44431 1 112336899999999996 4
Q ss_pred CCHHH-HHHHHHhCCCCCEEEecCCCCCCHHHH--HHHHHcCCCCCEEeccCC
Q psy9589 92 LTDAS-LIVLAQRCHQLHTLEVASCSQFTDTGF--QALARNCRLLAKMDLEEC 141 (163)
Q Consensus 92 ~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~~~--~~l~~~~~~L~~L~l~~~ 141 (163)
+++.. +..+. .+++|+.|+++++ .++.... ......+++|++|++++|
T Consensus 107 l~~~~~~~~l~-~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 107 LKDISTLEPLK-KLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCSSGGGGGGS-SCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCcchhHHHHh-cCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 65532 23333 7899999999996 4554321 234567899999999998
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.84 E-value=2.9e-09 Score=77.41 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=17.5
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|....-.. ...+++|++|++++|
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP----LKNLTKITELELSGN 95 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSC
T ss_pred ccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCC
Confidence 45566666666543221111 334556666666655
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.84 E-value=2.6e-09 Score=78.46 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=15.9
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|...+-.. ...+++|++|++++|
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n 98 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTN 98 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred hcCCccEEEccCCccccchh----hhcCCcCCEEEccCC
Confidence 34555555555543211111 234555555555554
No 36
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.82 E-value=5.3e-10 Score=81.25 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=17.7
Q ss_pred hCCCCCEEEecCCCCCCH--HHHHHHHHcCCCCCEEeccCC
Q psy9589 103 RCHQLHTLEVASCSQFTD--TGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 103 ~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|++++| .++. .....+...+++|++|++++|
T Consensus 195 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 195 KFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred cCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 4555555555553 3431 111222334555555555555
No 37
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.82 E-value=2.4e-09 Score=84.62 Aligned_cols=74 Identities=28% Similarity=0.308 Sum_probs=34.8
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
.+++|+.|+|+++ .+++. ..+ ..+++|+.|+|++| .+++... ...+++|+.|++++| .+++. .. +..+
T Consensus 129 ~l~~L~~L~Ls~N-~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l--~~-l~~l 196 (605)
T 1m9s_A 129 HLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--RA-LAGL 196 (605)
T ss_dssp GCTTCSEEECCSS-CCCCC--GGG-GSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--GG-GTTC
T ss_pred CCCccCEEECCCC-ccCCc--hhh-cccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC--hH-HccC
Confidence 4455555555553 23221 112 24556666666553 2332211 234566666666666 55442 11 3455
Q ss_pred CCCccC
Q psy9589 157 PRLEKL 162 (163)
Q Consensus 157 ~~L~~L 162 (163)
++|+.|
T Consensus 197 ~~L~~L 202 (605)
T 1m9s_A 197 KNLDVL 202 (605)
T ss_dssp TTCSEE
T ss_pred CCCCEE
Confidence 555544
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.81 E-value=4.5e-09 Score=75.82 Aligned_cols=121 Identities=25% Similarity=0.256 Sum_probs=83.1
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
...+++|++|++++|.. ++. .. ...+++|++|++++| .++... . ...+++|++|+++++
T Consensus 86 l~~l~~L~~L~l~~n~l-~~~--~~-l~~l~~L~~L~L~~n-~i~~~~--~-------------l~~l~~L~~L~l~~n- 144 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKV-KDL--SS-LKDLKKLKSLSLEHN-GISDIN--G-------------LVHLPQLESLYLGNN- 144 (291)
T ss_dssp GTTCTTCCEEECCSSCC-CCG--GG-GTTCTTCCEEECTTS-CCCCCG--G-------------GGGCTTCCEEECCSS-
T ss_pred cccCCCCCEEECCCCcC-CCC--hh-hccCCCCCEEECCCC-cCCCCh--h-------------hcCCCCCCEEEccCC-
Confidence 35689999999999764 331 11 456899999999998 444321 1 126789999999986
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
.+++. ..+ ..+++|+.|++++| .+++... ...+++|+.|++++| .+++. .. ...+++|+.|+
T Consensus 145 ~l~~~--~~l-~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l--~~-l~~l~~L~~L~ 206 (291)
T 1h6t_A 145 KITDI--TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLE 206 (291)
T ss_dssp CCCCC--GGG-GGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEE
T ss_pred cCCcc--hhh-ccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCC--hh-hccCCCCCEEE
Confidence 45443 233 37899999999885 4654332 456889999999998 77663 22 45677777653
No 39
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.80 E-value=8.8e-11 Score=80.14 Aligned_cols=128 Identities=16% Similarity=0.081 Sum_probs=81.1
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
...+++|++|++++|.. +. +. ....+++|+.|++++| .++.- ......+++|++|+++++
T Consensus 44 ~~~l~~L~~L~ls~n~l-~~--l~-~~~~l~~L~~L~l~~n-~l~~l--------------~~~~~~~~~L~~L~L~~N- 103 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI-EK--IS-SLSGMENLRILSLGRN-LIKKI--------------ENLDAVADTLEELWISYN- 103 (198)
T ss_dssp HHHTTTCSEEECSEEEE-SC--CC-CHHHHTTCCEEEEEEE-EECSC--------------SSHHHHHHHCSEEEEEEE-
T ss_pred HhcCCCCCEEECCCCCC-cc--cc-ccccCCCCCEEECCCC-Ccccc--------------cchhhcCCcCCEEECcCC-
Confidence 34578888888887643 33 11 3345788888888887 33311 011123568999999885
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChH---------HHHHHHhCCCCCcc
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDA---------TLIHLALGCPRLEK 161 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~---------~~~~l~~~~~~L~~ 161 (163)
.++.. ..+. .+++|+.|+++++ .+++-+.......+++|++|++++| .++.. ....+...+|+|+.
T Consensus 104 ~l~~l--~~~~-~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 104 QIASL--SGIE-KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp ECCCH--HHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcC--Cccc-cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEE
Confidence 45542 3444 6789999999884 5665332223456889999999998 55432 12334567888887
Q ss_pred CC
Q psy9589 162 LI 163 (163)
Q Consensus 162 L~ 163 (163)
||
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.79 E-value=3.1e-10 Score=81.09 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|....-. ....+++|++|++++|
T Consensus 61 ~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGN 95 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTS
T ss_pred cCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCC
Confidence 4667777777665432211 2234666777777665
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.77 E-value=7.4e-09 Score=75.24 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=38.7
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
.+++|++|+++++ .+++... ...+++|+.|+++++ .+++... ...+++|++|++++| .++... . ...+
T Consensus 149 ~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~-l~~l 216 (308)
T 1h6u_A 149 GLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVS--P-LANT 216 (308)
T ss_dssp GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG--G-GTTC
T ss_pred CCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCccc--c-ccCC
Confidence 4556666666654 2332111 225666666666663 3443221 244677777777776 555432 1 3466
Q ss_pred CCCccC
Q psy9589 157 PRLEKL 162 (163)
Q Consensus 157 ~~L~~L 162 (163)
++|+.|
T Consensus 217 ~~L~~L 222 (308)
T 1h6u_A 217 SNLFIV 222 (308)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 666654
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.76 E-value=1.3e-10 Score=83.39 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=26.3
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
.+++|+.|+++++ .++......+ ..+++|+.|++++| .++.... ..+..+++|+.|
T Consensus 175 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L 230 (285)
T 1ozn_A 175 GLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYL 230 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEE
T ss_pred CccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCC-cCCcCCH-HHcccCcccCEE
Confidence 3455555555543 2332211111 33566777777766 4444211 233466666654
No 43
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.75 E-value=6.4e-10 Score=80.82 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=53.1
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH--HHcCCCCCEEeccCCCCCCh--HHHHHH
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL--ARNCRLLAKMDLEECVLITD--ATLIHL 152 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~l~~~~~l~~--~~~~~l 152 (163)
.+++|++|+++++. +.......+ ..+++|++|+++++.-.+..++... ...+++|++|++++| .++. .....+
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCS-SCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHH
Confidence 67889999998853 433222222 2678999999988542333232211 245789999999998 7763 333345
Q ss_pred HhCCCCCccCC
Q psy9589 153 ALGCPRLEKLI 163 (163)
Q Consensus 153 ~~~~~~L~~L~ 163 (163)
+..+++|++||
T Consensus 220 ~~~l~~L~~L~ 230 (310)
T 4glp_A 220 AAAGVQPHSLD 230 (310)
T ss_dssp HHHTCCCSSEE
T ss_pred HhcCCCCCEEE
Confidence 56778887764
No 44
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.73 E-value=6.7e-09 Score=82.10 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=79.5
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|+|++|....-.. ...+++|++|++++| .++... . ...+++|++|+++++.
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~--~-------------l~~l~~L~~L~Ls~N~- 120 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKDLS--S-------------LKDLKKLKSLSLEHNG- 120 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCCCT--T-------------STTCTTCCEEECTTSC-
T ss_pred ccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCCCh--h-------------hccCCCCCEEEecCCC-
Confidence 468899999998876432222 456899999999987 443311 1 1267889999998863
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
+.+ +..+. .+++|+.|+|++| .+++. .....+++|+.|++++| .++.... +..+++|+.|+
T Consensus 121 l~~--l~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~ 181 (605)
T 1m9s_A 121 ISD--INGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLY 181 (605)
T ss_dssp CCC--CGGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEE
T ss_pred CCC--Ccccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEE
Confidence 443 22333 7889999999885 45543 22345788999999988 6655322 45777777653
No 45
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.72 E-value=5.1e-09 Score=74.52 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCC
Q psy9589 79 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPR 158 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 158 (163)
++|++|+++++ .+++. ..+. .+++|+.|+++++ .+++.. . ...+++|+.|++++| .+++. .....+++
T Consensus 106 ~~L~~L~L~~N-~l~~~--~~l~-~l~~L~~L~Ls~N-~i~~~~--~-l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~ 173 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDT--DSLI-HLKNLEILSIRNN-KLKSIV--M-LGFLSKLEVLDLHGN-EITNT---GGLTRLKK 173 (263)
T ss_dssp SSCCEEECCSS-CCSBS--GGGT-TCTTCCEEECTTS-CCCBCG--G-GGGCTTCCEEECTTS-CCCBC---TTSTTCCC
T ss_pred CcccEEEccCC-ccCCC--hhhc-CcccccEEECCCC-cCCCCh--H-HccCCCCCEEECCCC-cCcch---HHhccCCC
Confidence 45555555553 23321 1222 5677777777663 354422 1 234677777777776 55543 22345555
Q ss_pred CccC
Q psy9589 159 LEKL 162 (163)
Q Consensus 159 L~~L 162 (163)
|+.|
T Consensus 174 L~~L 177 (263)
T 1xeu_A 174 VNWI 177 (263)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 5544
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.71 E-value=4.6e-10 Score=80.51 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=18.9
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|+.|+++++ .+++.... ....+++|++|++++|
T Consensus 199 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 199 DLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDN 235 (285)
T ss_dssp TCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSS
T ss_pred CcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCC
Confidence 4566666666653 34432222 2234566666666665
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.67 E-value=4.4e-10 Score=85.46 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=17.4
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
++|++|+++++.. ++..- .....+++|++|++++|
T Consensus 30 ~~l~~L~Ls~n~i-~~~~~-~~~~~l~~L~~L~L~~n 64 (455)
T 3v47_A 30 AHVNYVDLSLNSI-AELNE-TSFSRLQDLQFLKVEQQ 64 (455)
T ss_dssp TTCCEEECCSSCC-CEECT-TTTSSCTTCCEEECCCC
T ss_pred CccCEEEecCCcc-CcCCh-hHhccCccccEEECcCC
Confidence 4566666666442 22111 11234666666666665
No 48
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.67 E-value=5e-10 Score=79.03 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=17.6
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|.. +...- .....+++|++|++++|
T Consensus 57 ~l~~L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 57 GLTKLTWLNLDYNQL-QTLSA-GVFDDLTELGTLGLANN 93 (251)
T ss_dssp TCTTCCEEECTTSCC-CCCCT-TTTTTCTTCCEEECTTS
T ss_pred CcccCCEEECCCCcC-CccCH-hHhccCCcCCEEECCCC
Confidence 356666666666432 21110 11233556666666655
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.64 E-value=4e-10 Score=88.60 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=15.6
Q ss_pred CCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 16 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 16 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
++++|+|++|. ++...- .....+++|++|++++|
T Consensus 53 ~~~~LdLs~N~-i~~l~~-~~f~~l~~L~~L~Ls~N 86 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRC 86 (635)
T ss_dssp TCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTC
T ss_pred CCCEEEeeCCC-CCCCCH-HHHhCCCCCCEEECCCC
Confidence 55666666543 221110 01133556666666655
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.64 E-value=2.9e-10 Score=81.19 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=32.0
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
.+++|++|+++++. +.......+ ..+++|++|+++++ .++...+......+++|+.|++++| .++
T Consensus 98 ~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~ 162 (276)
T 2z62_A 98 GLSSLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ 162 (276)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCCC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred CCccccEEECCCCC-ccccCchhc-ccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCC
Confidence 45566666665532 221111112 25666777777663 3433221122244677777777776 444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.63 E-value=2.6e-09 Score=78.85 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=20.5
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 52 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~ 52 (163)
..+++|++|++++|.. +..........+++|++|++++|.
T Consensus 121 ~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp TTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCc
Confidence 4567777777776542 211100112346666666666653
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=1.5e-08 Score=67.64 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=76.6
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
...++|++|++++|. +++. .....+++|+.|++++| .++.... .++..+++|++|+++++ .
T Consensus 39 ~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~ 99 (176)
T 1a9n_A 39 ATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNN-RICRIGE-------------GLDQALPDLTELILTNN-S 99 (176)
T ss_dssp GGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSS-CCCEECS-------------CHHHHCTTCCEEECCSC-C
T ss_pred hcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCC-cccccCc-------------chhhcCCCCCEEECCCC-c
Confidence 345699999999976 4432 22345899999999998 4543210 11236899999999996 4
Q ss_pred CCHHH-HHHHHHhCCCCCEEEecCCCCCCHHH--HHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 92 LTDAS-LIVLAQRCHQLHTLEVASCSQFTDTG--FQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 92 ~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~~--~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
+++.. +..+. .+++|+.|++++++ ++... -......+++|+.|+++.| ...+
T Consensus 100 i~~~~~~~~l~-~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~~ 154 (176)
T 1a9n_A 100 LVELGDLDPLA-SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV-KLKE 154 (176)
T ss_dssp CCCGGGGGGGG-GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC-CHHH
T ss_pred CCcchhhHhhh-cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC-CHHH
Confidence 54422 22333 79999999999964 44321 1223466899999999998 5444
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.62 E-value=1e-09 Score=78.18 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=16.1
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|+.|+++++ .++..... ....+++|++|++++|
T Consensus 155 ~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 155 KLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN 191 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC
Confidence 4455555555543 23321111 1123455555555555
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.62 E-value=5.2e-10 Score=79.76 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=42.9
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
.+++|++|+++++ .++......+ ..+++|++|+++++ .++.... .....+++|++|++++| .++.... ..+..+
T Consensus 107 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l 180 (270)
T 2o6q_A 107 QLVNLAELRLDRN-QLKSLPPRVF-DSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPE-GAFDKL 180 (270)
T ss_dssp TCSSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTC
T ss_pred cccCCCEEECCCC-ccCeeCHHHh-CcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeCh-hHhccC
Confidence 4667777777764 2332221122 25777888888774 3443221 12244678888888887 5443211 112345
Q ss_pred CCCccC
Q psy9589 157 PRLEKL 162 (163)
Q Consensus 157 ~~L~~L 162 (163)
++|+.|
T Consensus 181 ~~L~~L 186 (270)
T 2o6q_A 181 TELKTL 186 (270)
T ss_dssp TTCCEE
T ss_pred CCcCEE
Confidence 555544
No 55
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=1.2e-09 Score=76.15 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=16.0
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
++|++|++++|.. +...- .....+++|++|++++|
T Consensus 40 ~~L~~L~Ls~n~i-~~~~~-~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 40 TNAQILYLHDNQI-TKLEP-GVFDSLINLKELYLGSN 74 (229)
T ss_dssp TTCSEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcc-CccCH-HHhhCccCCcEEECCCC
Confidence 4566666665432 11100 11233555666666555
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.61 E-value=3.4e-09 Score=75.66 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=28.6
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD 56 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~ 56 (163)
.+++|++|+++++....... ...+++|++|++++| .++.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n-~l~~ 77 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGN-KLHD 77 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTS-CCCC
T ss_pred cccceeeeeeCCCCcccccc----cccCCCCcEEECCCC-CCCC
Confidence 56899999999976433222 356999999999998 4443
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.61 E-value=4.5e-09 Score=76.84 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=6.5
Q ss_pred hCCcCCEEEecCC
Q psy9589 39 RCHQLHTLEVASC 51 (163)
Q Consensus 39 ~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|
T Consensus 169 ~l~~L~~L~l~~n 181 (330)
T 1xku_A 169 GMKKLSYIRIADT 181 (330)
T ss_dssp GCTTCCEEECCSS
T ss_pred CCCCcCEEECCCC
Confidence 3455555555544
No 58
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.60 E-value=7.4e-10 Score=75.95 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=6.8
Q ss_pred hCCcCCEEEecCC
Q psy9589 39 RCHQLHTLEVASC 51 (163)
Q Consensus 39 ~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|
T Consensus 50 ~l~~L~~L~l~~n 62 (208)
T 2o6s_A 50 ELTSLTQLYLGGN 62 (208)
T ss_dssp TCTTCSEEECCSS
T ss_pred ccccCcEEECCCC
Confidence 3455555555554
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.59 E-value=8e-09 Score=79.86 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=18.9
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
..+++|++|++++|.. ++.... ....+++|+.|++++|
T Consensus 321 ~~l~~L~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLL-TDTVFE-NCGHLTELETLILQMN 358 (520)
T ss_dssp SSCCCCCEEECCSSCC-CTTTTT-TCCCCSSCCEEECCSS
T ss_pred hhCCcccEEEeECCcc-Chhhhh-hhccCCCCCEEEccCC
Confidence 3566666666666542 221111 1134566666666665
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.59 E-value=5.8e-08 Score=74.24 Aligned_cols=74 Identities=23% Similarity=0.215 Sum_probs=35.8
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
.+++|++|+++++. +++... ...+++|+.|++++| .+++. .. ...+++|+.|++++| .+++... ...+
T Consensus 307 ~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~---~~~l 374 (466)
T 1o6v_A 307 NLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDV--SS-LANLTNINWLSAGHN-QISDLTP---LANL 374 (466)
T ss_dssp GCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCBCGG---GTTC
T ss_pred CCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCc--hh-hccCCCCCEEeCCCC-ccCccch---hhcC
Confidence 45556666665542 322211 125566666666654 34332 11 233566666666666 4444221 3455
Q ss_pred CCCccC
Q psy9589 157 PRLEKL 162 (163)
Q Consensus 157 ~~L~~L 162 (163)
++|+.|
T Consensus 375 ~~L~~L 380 (466)
T 1o6v_A 375 TRITQL 380 (466)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 555543
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.59 E-value=8.8e-08 Score=73.24 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=39.5
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
.+++|++|+++++. +.+.. . ...+++|+.|++++| .+++... ...+++|++|++++| .++.. . -...+
T Consensus 285 ~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~l~~l 352 (466)
T 1o6v_A 285 GLTALTNLELNENQ-LEDIS--P-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--S-SLANL 352 (466)
T ss_dssp TCTTCSEEECCSSC-CSCCG--G-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--G-GGTTC
T ss_pred CCCccCeEEcCCCc-ccCch--h-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc--h-hhccC
Confidence 45666666666642 32211 1 235677777777664 3443221 245677777777776 55442 1 23456
Q ss_pred CCCccC
Q psy9589 157 PRLEKL 162 (163)
Q Consensus 157 ~~L~~L 162 (163)
++|+.|
T Consensus 353 ~~L~~L 358 (466)
T 1o6v_A 353 TNINWL 358 (466)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 666654
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.58 E-value=1.2e-09 Score=79.59 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=46.9
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCC
Q psy9589 78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCP 157 (163)
Q Consensus 78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 157 (163)
+++|++|+++++ .++..... ...+++|+.|+++++ .++.- ......+++|+.|++++| .++...+..+...++
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCH
T ss_pred cccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccc
Confidence 567888888774 34432111 236788888888874 45531 112245688888888887 666445555555666
Q ss_pred CCcc
Q psy9589 158 RLEK 161 (163)
Q Consensus 158 ~L~~ 161 (163)
+|+.
T Consensus 263 ~L~~ 266 (317)
T 3o53_A 263 RVQT 266 (317)
T ss_dssp HHHH
T ss_pred cceE
Confidence 5544
No 63
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.58 E-value=6.1e-10 Score=77.26 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=28.9
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|+++++ .++......+. .+++|+.|+++++ .++..... ....+++|++|++++|
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFI-GLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSST-TCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSC
T ss_pred CCcCCCEEECCCC-cCCeECHhHcC-CCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCc
Confidence 4556666666653 23322111222 4566666666653 34332111 1233566666666665
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.56 E-value=1.9e-09 Score=82.55 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=18.3
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|. ++...- .....+++|++|++++|
T Consensus 54 ~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 54 SFPHLEELELNENI-VSAVEP-GAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-cCEeCh-hhhhCCccCCEEECCCC
Confidence 45666666666643 222111 11234566666666665
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.55 E-value=2.9e-10 Score=82.34 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=25.3
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|+++++ .+++.....+. .+++|+.|+++++ .++...... ...+++|++|++++|
T Consensus 173 ~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 173 ELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN 233 (306)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTS
T ss_pred hCcCCCEEECCCC-CcCCcCHHHhc-CCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCC
Confidence 3445555555543 23222111122 4455555555553 233211111 123455666666655
No 66
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.55 E-value=1e-08 Score=77.95 Aligned_cols=116 Identities=18% Similarity=0.114 Sum_probs=75.1
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|....... ......+++|++|++++| .++...... ...+++|++|+++++ .
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-------------~~~l~~L~~L~L~~n-~ 114 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN-QFLQLETGA-------------FNGLANLEVLTLTQC-N 114 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTC-TTCEECTTT-------------TTTCTTCCEEECTTS-C
T ss_pred ccCccccEEECcCCcccceEC-cccccccccCCEEeCCCC-ccCccChhh-------------ccCcccCCEEeCCCC-C
Confidence 468999999999975421211 112345899999999997 444321111 125789999999986 4
Q ss_pred CCHHHHHH-HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 92 LTDASLIV-LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 92 ~~~~~~~~-l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
+++..... ....+++|++|+++++ .++......+...+++|++|++++| .++
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~ 167 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN-KVK 167 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC-CBS
T ss_pred CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC-ccc
Confidence 55443332 2337899999999885 4554322233456789999999987 444
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.54 E-value=1.3e-09 Score=76.93 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=26.1
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT 55 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~ 55 (163)
++|++|+++++.. +...- .....+++|++|++++| .++
T Consensus 35 ~~l~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~L~~n-~l~ 72 (251)
T 3m19_A 35 ADTEKLDLQSTGL-ATLSD-ATFRGLTKLTWLNLDYN-QLQ 72 (251)
T ss_dssp TTCCEEECTTSCC-CCCCT-TTTTTCTTCCEEECTTS-CCC
T ss_pred CCCCEEEccCCCc-CccCH-hHhcCcccCCEEECCCC-cCC
Confidence 5799999999763 22111 12346899999999997 444
No 68
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.54 E-value=8.9e-10 Score=76.42 Aligned_cols=12 Identities=8% Similarity=0.376 Sum_probs=6.3
Q ss_pred CCcCCEEEecCC
Q psy9589 40 CHQLHTLEVASC 51 (163)
Q Consensus 40 ~~~L~~L~l~~~ 51 (163)
+++|++|++++|
T Consensus 55 l~~L~~L~Ls~N 66 (220)
T 2v9t_B 55 YKKLRRIDLSNN 66 (220)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 455555555554
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.53 E-value=3.3e-09 Score=78.29 Aligned_cols=38 Identities=18% Similarity=-0.006 Sum_probs=27.4
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
..+++|++|++++|.. +.... .....+++|++|++++|
T Consensus 97 ~~l~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYL-SNLSS-SWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp TTCTTCCEEECCSSCC-SSCCH-HHHTTCTTCSEEECTTC
T ss_pred CCCCCCCEEECCCCcC-CcCCH-hHhCCCccCCEEECCCC
Confidence 4578999999998753 33221 23456899999999987
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.53 E-value=1.8e-09 Score=82.08 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=18.1
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|. ++.... .....+++|++|++++|
T Consensus 86 ~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 86 HLRHLEILQLSRNH-IRTIEI-GAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCSSCCEEECCSSC-CCEECG-GGGTTCSSCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CCccCh-hhccCCccCCEEECCCC
Confidence 45666666666643 222111 11233566666666665
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.53 E-value=2e-09 Score=82.01 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=19.7
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ 53 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~ 53 (163)
.+++|++|++++|.. +...- .....+++|++|++++|..
T Consensus 145 ~l~~L~~L~L~~N~l-~~~~~-~~~~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 145 YLSKLRELWLRNNPI-ESIPS-YAFNRVPSLMRLDLGELKK 183 (452)
T ss_dssp SCTTCCEEECCSCCC-CEECT-TTTTTCTTCCEEECCCCTT
T ss_pred ccCCCCEEECCCCCc-ceeCH-hHHhcCCcccEEeCCCCCC
Confidence 467777777777542 21110 1123355666666655433
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.53 E-value=4.2e-09 Score=77.21 Aligned_cols=63 Identities=27% Similarity=0.396 Sum_probs=34.9
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVL 143 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 143 (163)
.+++|++|+++++..... ....+ ..+++|+.|++++|....... .. ...+++|++|++++|..
T Consensus 227 ~l~~L~~L~Ls~n~~~~~-~p~~~-~~l~~L~~L~L~~n~~~~~~p-~~-~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRN-YPPIF-GGRAPLKRLILKDCSNLLTLP-LD-IHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp GCTTCCEEECTTCTTCCB-CCCCT-TCCCCCCEEECTTCTTCCBCC-TT-GGGCTTCCEEECTTCTT
T ss_pred cCCCCCEEECcCCcchhh-hHHHh-cCCCCCCEEECCCCCchhhcc-hh-hhcCCCCCEEeCCCCCc
Confidence 567777777777542221 11112 256777777777754333211 11 24567788888887743
No 73
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.52 E-value=4.1e-09 Score=72.19 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=73.2
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. +.... .....+++|++|++++| .++..... .+..+++|++|+++++ .
T Consensus 49 ~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~-------------~~~~l~~L~~L~L~~N-~ 111 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKL-QSLPN-GVFNKLTSLTYLNLSTN-QLQSLPNG-------------VFDKLTQLKELALNTN-Q 111 (208)
T ss_dssp TTCTTCSEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-C
T ss_pred cccccCcEEECCCCcc-CccCh-hhcCCCCCcCEEECCCC-cCCccCHh-------------HhcCccCCCEEEcCCC-c
Confidence 4679999999998653 32111 12346899999999998 44422110 1236789999999985 4
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
++..... ....+++|+.|+++++ .++.... .....+++|++|++++|+
T Consensus 112 l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 112 LQSLPDG-VFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCTT-TTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CcccCHh-HhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence 5432222 2237899999999985 4654221 223557999999999983
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.52 E-value=4.8e-09 Score=76.94 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=6.8
Q ss_pred CCCCCEEeccCC
Q psy9589 130 CRLLAKMDLEEC 141 (163)
Q Consensus 130 ~~~L~~L~l~~~ 141 (163)
+++|++|++++|
T Consensus 252 l~~L~~L~L~~n 263 (328)
T 4fcg_A 252 RAPLKRLILKDC 263 (328)
T ss_dssp CCCCCEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 455555555555
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.52 E-value=1.3e-09 Score=85.01 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=27.7
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|+++++ .+.......+ ..+++|++|+++++ .++...+.....++++|++|++++|
T Consensus 98 ~l~~L~~L~L~~n-~l~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 98 GLSSLQKLVAVET-NLASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCSC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred Ccccccccccccc-ccccCCCccc-cccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCC
Confidence 3455556655553 2222111112 24566666666653 2332111111233566666666665
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.51 E-value=1.9e-09 Score=81.87 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=18.0
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 52 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~ 52 (163)
.+++|++|++++|.. +...- .....+++|++|++++|.
T Consensus 134 ~l~~L~~L~L~~N~i-~~~~~-~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 134 YLSKLKELWLRNNPI-ESIPS-YAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp SCSSCCEEECCSCCC-CEECT-TTTTTCTTCCEEECCCCT
T ss_pred ccccCceeeCCCCcc-cccCH-HHhhhCcccCEeCCCCCC
Confidence 456677777766542 21110 112235555555555543
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.50 E-value=1.1e-08 Score=78.98 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=55.0
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
.+++|++|++++|....-..+......+++|++|++++| .++. .... .+..+++|++|+++++ .
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~-------------~~~~l~~L~~L~Ls~N-~ 410 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKG-------------DCSWTKSLLSLNMSSN-I 410 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGC-------------SCCCCTTCCEEECCSS-C
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccc-------------hhccCccCCEEECcCC-C
Confidence 455566666655443221223233344566666666555 2221 1000 0113455666666553 2
Q ss_pred CCHHHHHHHHHhC-CCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 92 LTDASLIVLAQRC-HQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 92 ~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
+++... ..+ ++|+.|++++| .++.-. ..+ ..+++|++|++++| .++.-.. ..+..+++|+.|
T Consensus 411 l~~~~~----~~l~~~L~~L~Ls~N-~l~~ip-~~~-~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L 473 (520)
T 2z7x_B 411 LTDTIF----RCLPPRIKVLDLHSN-KIKSIP-KQV-VKLEALQELNVASN-QLKSVPD-GIFDRLTSLQKI 473 (520)
T ss_dssp CCGGGG----GSCCTTCCEEECCSS-CCCCCC-GGG-GGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEE
T ss_pred CCcchh----hhhcccCCEEECCCC-cccccc-hhh-hcCCCCCEEECCCC-cCCccCH-HHhccCCcccEE
Confidence 332111 122 46666666653 344111 111 24566667777666 4442111 123345555544
No 78
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.50 E-value=1.3e-09 Score=85.66 Aligned_cols=62 Identities=19% Similarity=0.126 Sum_probs=27.0
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|+++++. +.......+ ..+++|++|+++++ .++...+.....++++|++|++++|
T Consensus 102 ~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 102 GLTSLENLVAVETK-LASLESFPI-GQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TCTTCCEEECTTSC-CCCSSSSCC-TTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CcccCCEEEccCCc-ccccccccc-CCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence 34555555555532 221111112 24556666666553 2332111112234566666666665
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=4.4e-08 Score=69.65 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=82.7
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. ++.. -...+++|++|++++| .++.... ...+++|++|+++++ .
T Consensus 38 ~~l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~L~~N-~i~~~~~---------------l~~l~~L~~L~L~~N-~ 96 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNI-QSLA---GMQFFTNLKELHLSHN-QISDLSP---------------LKDLTKLEELSVNRN-R 96 (263)
T ss_dssp HHHTTCSEEECTTSCC-CCCT---TGGGCTTCCEEECCSS-CCCCCGG---------------GTTCSSCCEEECCSS-C
T ss_pred hhcCcCcEEECcCCCc-ccch---HHhhCCCCCEEECCCC-ccCCChh---------------hccCCCCCEEECCCC-c
Confidence 3578999999999753 3322 2356899999999998 4544321 236899999999996 3
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
+++. ..+. . ++|+.|+++++ .+++-. . ...+++|+.|++++| .+++.. ....+++|+.|+
T Consensus 97 l~~l--~~~~-~-~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~ 156 (263)
T 1xeu_A 97 LKNL--NGIP-S-ACLSRLFLDNN-ELRDTD--S-LIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLD 156 (263)
T ss_dssp CSCC--TTCC-C-SSCCEEECCSS-CCSBSG--G-GTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEE
T ss_pred cCCc--Cccc-c-CcccEEEccCC-ccCCCh--h-hcCcccccEEECCCC-cCCCCh---HHccCCCCCEEE
Confidence 4431 2222 2 89999999985 566532 2 346899999999998 777632 345778887653
No 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.49 E-value=2.5e-09 Score=81.54 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=14.2
Q ss_pred CCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 130 CRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 130 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
+++|+.|++++| .++.... ..+..+++|+.|
T Consensus 217 l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L 247 (452)
T 3zyi_A 217 LVGLEELEMSGN-HFPEIRP-GSFHGLSSLKKL 247 (452)
T ss_dssp CTTCCEEECTTS-CCSEECG-GGGTTCTTCCEE
T ss_pred cccccEEECcCC-cCcccCc-ccccCccCCCEE
Confidence 455666666665 4433111 123355555544
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.48 E-value=4.5e-09 Score=78.53 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=31.6
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
.+++|++|+++++ .++... ..+...+++|++|+++++ .++..... ....+++|++|++++| .++.
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~ 179 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSN-RLTH 179 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSS-CCSB
T ss_pred CCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCC-cCCc
Confidence 4566666666664 233111 111225666666666663 33322111 1233566677777665 4443
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.48 E-value=1.7e-08 Score=79.27 Aligned_cols=114 Identities=19% Similarity=0.141 Sum_probs=75.7
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|+|++|.. +...- .....+++|++|++++| .++..... .+..+++|++|+++++ .
T Consensus 73 ~~l~~L~~L~Ls~N~i-~~i~~-~~f~~L~~L~~L~Ls~N-~l~~l~~~-------------~f~~L~~L~~L~Ls~N-~ 135 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEI-QTIED-GAYQSLSHLSTLILTGN-PIQSLALG-------------AFSGLSSLQKLVAVET-N 135 (635)
T ss_dssp TTCTTCCEEECTTCCC-CEECT-TTTTTCTTCCEEECTTC-CCCEECGG-------------GGTTCTTCCEEECTTS-C
T ss_pred hCCCCCCEEECCCCcC-CCcCh-hHhcCCCCCCEEEccCC-cCCCCCHH-------------HhcCCCCCCEEECCCC-c
Confidence 4689999999999753 32111 12356899999999998 45432111 2236889999999986 3
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
++......+ ..+++|++|+++++ .++...+......++.|++|++++| .++
T Consensus 136 l~~l~~~~~-~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~ 186 (635)
T 4g8a_A 136 LASLENFPI-GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ 186 (635)
T ss_dssp CCCSTTCCC-TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred CCCCChhhh-hcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-ccc
Confidence 443221122 37899999999985 4543322234456789999999998 554
No 83
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.48 E-value=4.1e-09 Score=78.77 Aligned_cols=128 Identities=12% Similarity=0.098 Sum_probs=83.9
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++++.|+++++. ++...- .+...+++|++|++++| .++...... ...+++|++|+++++ .+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~-------------~~~l~~L~~L~L~~n-~l 105 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPA-ALLDSFRQVELLNLNDL-QIEEIDTYA-------------FAYAHTIQKLYMGFN-AI 105 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECT-HHHHHCCCCSEEECTTS-CCCEECTTT-------------TTTCTTCCEEECCSS-CC
T ss_pred ccCCceEEEecCCc-hhhCCh-hHhcccccCcEEECCCC-cccccChhh-------------ccCCCCcCEEECCCC-CC
Confidence 46899999999864 333221 34466999999999997 454322111 126789999999986 35
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
+......+ ..+++|++|+++++ .++.-. ..+...+++|++|++++| .++.... ..+..+++|+.|
T Consensus 106 ~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L 170 (390)
T 3o6n_A 106 RYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNL 170 (390)
T ss_dssp CCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEE
T ss_pred CcCCHHHh-cCCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEE
Confidence 44322233 37899999999985 465322 122355899999999998 6654211 223566777765
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.46 E-value=4.9e-09 Score=82.43 Aligned_cols=126 Identities=16% Similarity=0.079 Sum_probs=64.8
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++|++|++++|.. ....- .....+++|++|++++| .++..... ....+++|++|+++++ .+
T Consensus 55 ~l~~L~~L~Ls~n~i-~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~-------------~~~~l~~L~~L~L~~n-~i 117 (606)
T 3t6q_A 55 RLINLTFLDLTRCQI-YWIHE-DTFQSQHRLDTLVLTAN-PLIFMAET-------------ALSGPKALKHLFFIQT-GI 117 (606)
T ss_dssp TCTTCSEEECTTCCC-CEECT-TTTTTCTTCCEEECTTC-CCSEECTT-------------TTSSCTTCCEEECTTS-CC
T ss_pred cCccceEEECCCCcc-ceeCh-hhccCccccCeeeCCCC-cccccChh-------------hhcccccccEeecccc-Cc
Confidence 466777777766542 22110 11234677777777766 33221100 1125677777777774 34
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCc
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE 160 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 160 (163)
+......+. .+++|++|+++++ .++......+.. +++|++|++++| .++...... +..+++|+
T Consensus 118 ~~l~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~ 180 (606)
T 3t6q_A 118 SSIDFIPLH-NQKTLESLYLGSN-HISSIKLPKGFP-TEKLKVLDFQNN-AIHYLSKED-MSSLQQAT 180 (606)
T ss_dssp SCGGGSCCT-TCTTCCEEECCSS-CCCCCCCCTTCC-CTTCCEEECCSS-CCCEECHHH-HHTTTTCC
T ss_pred ccCCcchhc-cCCcccEEECCCC-cccccCcccccC-CcccCEEEcccC-cccccChhh-hhhhcccc
Confidence 432222232 6777888888774 344322122222 677888888887 555322222 23555555
No 85
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=1.7e-08 Score=79.32 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=84.4
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD 94 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 94 (163)
..|++|++++|.. +. +.. ...+++|+.|++++| .++... .....+++|+.|+++++ .++.
T Consensus 441 ~~L~~L~Ls~n~l-~~--lp~-~~~l~~L~~L~Ls~N-~l~~lp--------------~~~~~l~~L~~L~Ls~N-~l~~ 500 (567)
T 1dce_A 441 ADVRVLHLAHKDL-TV--LCH-LEQLLLVTHLDLSHN-RLRALP--------------PALAALRCLEVLQASDN-ALEN 500 (567)
T ss_dssp TTCSEEECTTSCC-SS--CCC-GGGGTTCCEEECCSS-CCCCCC--------------GGGGGCTTCCEEECCSS-CCCC
T ss_pred cCceEEEecCCCC-CC--CcC-ccccccCcEeecCcc-cccccc--------------hhhhcCCCCCEEECCCC-CCCC
Confidence 4699999999753 33 122 456899999999998 444210 01236899999999995 4554
Q ss_pred HHHHHHHHhCCCCCEEEecCCCCCCHHH-HHHHHHcCCCCCEEeccCCCCCChH--HHHHHHhCCCCCccCC
Q psy9589 95 ASLIVLAQRCHQLHTLEVASCSQFTDTG-FQALARNCRLLAKMDLEECVLITDA--TLIHLALGCPRLEKLI 163 (163)
Q Consensus 95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~L~~L~ 163 (163)
+..+. .+++|+.|+++++ .++... ... ...+++|+.|++++| .++.. ....+...+|+|+.||
T Consensus 501 --lp~l~-~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 --VDGVA-NLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp --CGGGT-TCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred --CcccC-CCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 23343 7999999999985 566432 222 345899999999998 66542 2345566788888774
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.46 E-value=7.6e-09 Score=73.79 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=25.7
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|+++++ .++......+. .+++|++|+++++ .++...... ...+++|++|++++|
T Consensus 74 ~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 74 SLSHLSTLILTGN-PIQSLALGAFS-GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN 134 (276)
T ss_dssp TCTTCCEEECTTC-CCCEECTTTTT-TCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS
T ss_pred CCcCCCEEECCCC-ccCccChhhhc-CCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC
Confidence 3455555555553 23222111222 4555555555553 222211001 123455555555555
No 87
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.46 E-value=9.4e-09 Score=83.24 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=24.6
Q ss_pred hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 103 RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 103 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
.+++|++|++++|. ++... .. ...+++|++|++++| .++.... ..+..+++|+.|
T Consensus 198 ~l~~L~~L~Ls~n~-l~~~~-~~-l~~l~~L~~L~Ls~n-~l~~~~~-~~l~~l~~L~~L 252 (768)
T 3rgz_A 198 RCVNLEFLDVSSNN-FSTGI-PF-LGDCSALQHLDISGN-KLSGDFS-RAISTCTELKLL 252 (768)
T ss_dssp TCTTCCEEECCSSC-CCSCC-CB-CTTCCSCCEEECCSS-CCCSCHH-HHTTTCSSCCEE
T ss_pred cCCcCCEEECcCCc-CCCCC-cc-cccCCCCCEEECcCC-cCCCccc-HHHhcCCCCCEE
Confidence 45555555555532 22211 11 233556666666665 4443222 223455555544
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.44 E-value=1e-09 Score=89.67 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=32.2
Q ss_pred cCCCCceEecCCCCCCCHHHHHH-HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIV-LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|+++++ .+++..... ....+++|+.|+++++ .++.........++++|++|++++|
T Consensus 95 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 95 GLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 4566777777664 233211111 1225667777777664 3333221112244677777777776
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.43 E-value=4.2e-09 Score=76.00 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=6.7
Q ss_pred cCCCCcEEeecCC
Q psy9589 13 NCPNLYYLCLSGC 25 (163)
Q Consensus 13 ~~~~L~~L~l~~~ 25 (163)
.+++|++|++++|
T Consensus 53 ~l~~L~~L~L~~n 65 (290)
T 1p9a_G 53 PYTRLTQLNLDRA 65 (290)
T ss_dssp TCTTCCEEECTTS
T ss_pred cCCCCCEEECCCC
Confidence 3455555555554
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.43 E-value=1.6e-08 Score=70.09 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=73.9
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. +...- .....+++|++|++++| .++.... .++..+++|+.|+++++ .
T Consensus 53 ~~l~~L~~L~Ls~N~i-~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-------------~~f~~l~~L~~L~L~~N-~ 115 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQI-SELAP-DAFQGLRSLNSLVLYGN-KITELPK-------------SLFEGLFSLQLLLLNAN-K 115 (220)
T ss_dssp TTCTTCCEEECCSSCC-CEECT-TTTTTCSSCCEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-C
T ss_pred hCCCCCCEEECCCCcC-CCcCH-HHhhCCcCCCEEECCCC-cCCccCH-------------hHccCCCCCCEEECCCC-C
Confidence 3578999999998753 32111 12345899999999998 4442110 11236789999999985 4
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
++......+. .+++|+.|+++++ .++..... ....+++|++|++++|+
T Consensus 116 l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 116 INCLRVDAFQ-DLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CCEeCHHHcC-CCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEEEeCCCC
Confidence 5543333333 7899999999985 45543322 23457899999999984
No 91
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=4.9e-08 Score=80.11 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=62.7
Q ss_pred hcCCCCcEEeecCCCCCChH----------------HHHHH--HHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHH
Q psy9589 12 ENCPNLYYLCLSGCSQLTDA----------------SLIVL--AQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLS 73 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~----------------~l~~i--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (163)
..+++|++|+|++|.. +.. .+..- ...+++|++|++++|....... .
T Consensus 445 ~~L~~L~~L~Ls~N~L-sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~------------- 509 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-D------------- 509 (876)
T ss_dssp GGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-G-------------
T ss_pred hcCCCCCEEECcCCcC-CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-H-------------
Confidence 4578888888888663 331 11111 1257888888888874222110 0
Q ss_pred HHhcCCCCceEecCCCCCCCH-HHHHHHH------HhCCCCCEEEecCCCCCCHHHHHH--HHHcCCCCCEEeccCCCCC
Q psy9589 74 LAENCPNLYYLCLSGCSQLTD-ASLIVLA------QRCHQLHTLEVASCSQFTDTGFQA--LARNCRLLAKMDLEECVLI 144 (163)
Q Consensus 74 ~~~~~~~L~~L~l~~~~~~~~-~~~~~l~------~~~~~L~~L~l~~~~~i~~~~~~~--l~~~~~~L~~L~l~~~~~l 144 (163)
....+++|++|+++++..++. .....+. ..+|+|+.|+++++ .++. +.. ....+++|+.|++++| .+
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~l~~L~~L~~L~Ls~N-~l 585 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--FPASASLQKMVKLGLLDCVHN-KV 585 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--CCCHHHHTTCTTCCEEECTTS-CC
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--cCChhhhhcCCCCCEEECCCC-Cc
Confidence 112567777777777543554 2222222 23457777777764 3441 111 2344677777777776 44
Q ss_pred C
Q psy9589 145 T 145 (163)
Q Consensus 145 ~ 145 (163)
+
T Consensus 586 ~ 586 (876)
T 4ecn_A 586 R 586 (876)
T ss_dssp C
T ss_pred c
Confidence 4
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.43 E-value=2.9e-09 Score=77.64 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
...+...+++|++|++++|.. +.... .....+++|++|++++|
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n 68 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPL-SQISA-ADLAPFTKLELLNLSSN 68 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCC-CCCCH-HHHTTCTTCCEEECTTS
T ss_pred HHHHhccCCCCCEEECcCCcc-CcCCH-HHhhCCCcCCEEECCCC
Confidence 345556678999999988653 33222 22356888999999887
No 93
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.42 E-value=5e-09 Score=80.20 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=64.7
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. +.... .....+++|++|++++| .++..... .+..+++|++|+++++ .
T Consensus 77 ~~l~~L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~-------------~~~~l~~L~~L~l~~n-~ 139 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRL-KLIPL-GVFTGLSNLTKLDISEN-KIVILLDY-------------MFQDLYNLKSLEVGDN-D 139 (477)
T ss_dssp TTCTTCCEEECCSSCC-CSCCT-TSSTTCTTCCEEECTTS-CCCEECTT-------------TTTTCTTCCEEEECCT-T
T ss_pred hCCccCCEEECCCCcC-CccCc-ccccCCCCCCEEECCCC-ccccCChh-------------HccccccCCEEECCCC-c
Confidence 4578999999988653 32111 12245788999999887 34322111 1125677888888774 3
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
+.......+. .+++|+.|+++++ .++..... ....+++|+.|++++| .++
T Consensus 140 l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~n-~i~ 189 (477)
T 2id5_A 140 LVYISHRAFS-GLNSLEQLTLEKC-NLTSIPTE-ALSHLHGLIVLRLRHL-NIN 189 (477)
T ss_dssp CCEECTTSST-TCTTCCEEEEESC-CCSSCCHH-HHTTCTTCCEEEEESC-CCC
T ss_pred cceeChhhcc-CCCCCCEEECCCC-cCcccChh-HhcccCCCcEEeCCCC-cCc
Confidence 3332222222 5777777877774 34433322 2344677777777776 443
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.42 E-value=3e-07 Score=71.41 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=5.6
Q ss_pred hCCCCCEEEecC
Q psy9589 103 RCHQLHTLEVAS 114 (163)
Q Consensus 103 ~~~~L~~L~l~~ 114 (163)
.+++|++|++++
T Consensus 385 ~l~~L~~L~Ls~ 396 (549)
T 2z81_A 385 TLKNLTSLDISR 396 (549)
T ss_dssp GCTTCCEEECTT
T ss_pred cCCCCCEEECCC
Confidence 344444444444
No 95
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=3.8e-08 Score=80.76 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=70.0
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
.+++|++|++++|....... .....+++|++|++++|..++. ..-..+.. +......+|+|++|+++++ .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~------L~~~~~~l~~L~~L~Ls~N-~ 559 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKADWTR------LADDEDTGPKIQIFYMGYN-N 559 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHH------HHHCTTTTTTCCEEECCSS-C
T ss_pred cCCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCCCcccccchHHHHh------hhhcccccCCccEEEeeCC-c
Confidence 68899999999976433222 2335689999999999853665 21111111 0001235678888888885 3
Q ss_pred CCHHHHHH--HHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 92 LTDASLIV--LAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 92 ~~~~~~~~--l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
++ .+.. ....+++|+.|+++++ .++ .+. ....+++|+.|++++| .++
T Consensus 560 L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~ 608 (876)
T 4ecn_A 560 LE--EFPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIE 608 (876)
T ss_dssp CC--BCCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCS
T ss_pred CC--ccCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-ccc
Confidence 44 2222 2337788888888774 354 222 2234677777777776 444
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.41 E-value=2.8e-09 Score=79.07 Aligned_cols=114 Identities=18% Similarity=0.090 Sum_probs=58.6
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++|++|+|++|.. +...- .....+++|++|++++| .++.... ..+..+++|+.|+++++ .+
T Consensus 62 ~l~~L~~L~L~~N~i-~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~i 124 (361)
T 2xot_A 62 RLTNLHSLLLSHNHL-NFISS-EAFVPVPNLRYLDLSSN-HLHTLDE-------------FLFSDLQALEVLLLYNN-HI 124 (361)
T ss_dssp CCTTCCEEECCSSCC-CEECT-TTTTTCTTCCEEECCSS-CCCEECT-------------TTTTTCTTCCEEECCSS-CC
T ss_pred cccccCEEECCCCcC-CccCh-hhccCCCCCCEEECCCC-cCCcCCH-------------HHhCCCcCCCEEECCCC-cc
Confidence 456677777766542 22111 11234667777777765 3332110 01225677777777774 34
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHH--HHcCCCCCEEeccCCCCCCh
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL--ARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~l~~~~~l~~ 146 (163)
.......+ ..+++|+.|+++++ .++.-....+ ...+++|+.|++++| .++.
T Consensus 125 ~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 177 (361)
T 2xot_A 125 VVVDRNAF-EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKK 177 (361)
T ss_dssp CEECTTTT-TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCC
T ss_pred cEECHHHh-CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCc
Confidence 43222222 25777888888774 3443221111 134678888888887 5554
No 97
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.41 E-value=2.5e-09 Score=84.08 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=7.0
Q ss_pred CCCCCEEeccCC
Q psy9589 130 CRLLAKMDLEEC 141 (163)
Q Consensus 130 ~~~L~~L~l~~~ 141 (163)
+++|++|++++|
T Consensus 448 l~~L~~L~L~~n 459 (606)
T 3t6q_A 448 LPALQHLNLQGN 459 (606)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 455666666655
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.41 E-value=1.6e-08 Score=70.08 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=81.5
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
.+.+++|++++|.. +...-..+...+++|++|++++| .++..... .+..+++|++|+++++ .++
T Consensus 31 ~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-------------~~~~l~~L~~L~Ls~N-~l~ 94 (220)
T 2v70_A 31 PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNN-KITDIEEG-------------AFEGASGVNEILLTSN-RLE 94 (220)
T ss_dssp CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSS-CCCEECTT-------------TTTTCTTCCEEECCSS-CCC
T ss_pred CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCC-cCCEECHH-------------HhCCCCCCCEEECCCC-ccC
Confidence 35789999999753 33211122356999999999997 45432111 1236789999999985 454
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
......+ ..+++|++|+++++ .++......+ ..+++|+.|++++| .++.... ..+..+++|+.|
T Consensus 95 ~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L 158 (220)
T 2v70_A 95 NVQHKMF-KGLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTL 158 (220)
T ss_dssp CCCGGGG-TTCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEE
T ss_pred ccCHhHh-cCCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEE
Confidence 3322223 37899999999985 4554321222 45789999999998 6654211 223466777655
No 99
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.40 E-value=1.2e-08 Score=80.41 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=59.1
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|. ++..... ....+++|++|++++| .++..... .+..+++|++|+++++ .
T Consensus 72 ~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-------------~~~~l~~L~~L~L~~n-~ 134 (597)
T 3oja_B 72 DSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPH-------------VFQNVPLLTVLVLERN-D 134 (597)
T ss_dssp HHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-C
T ss_pred ccCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCC-cCCCCCHH-------------HHcCCCCCCEEEeeCC-C
Confidence 346777777777654 2221111 1234677777777766 33321111 1125677777777774 3
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
++.... .++..+++|++|++++| .++...... ...+++|++|++++| .++.
T Consensus 135 l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~ 185 (597)
T 3oja_B 135 LSSLPR-GIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSN-RLTH 185 (597)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTS-CCSB
T ss_pred CCCCCH-HHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCC-CCCC
Confidence 432111 12235677777777764 344322111 234677777777776 5544
No 100
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.40 E-value=1.7e-09 Score=85.11 Aligned_cols=12 Identities=17% Similarity=0.011 Sum_probs=6.3
Q ss_pred CCCCCEEeccCC
Q psy9589 130 CRLLAKMDLEEC 141 (163)
Q Consensus 130 ~~~L~~L~l~~~ 141 (163)
+++|++|++++|
T Consensus 520 l~~L~~L~l~~N 531 (606)
T 3vq2_A 520 LYSLSTLDCSFN 531 (606)
T ss_dssp CTTCCEEECTTS
T ss_pred CCcCCEEECCCC
Confidence 445555555554
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.40 E-value=8.2e-09 Score=84.39 Aligned_cols=130 Identities=20% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
.++|++|+|++|.. +...- .....+++|++|++++|..+...... .+..+++|++|+++++ .+.
T Consensus 23 p~~l~~LdLs~N~i-~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~-------------~f~~L~~L~~L~Ls~N-~l~ 86 (844)
T 3j0a_A 23 LNTTERLLLSFNYI-RTVTA-SSFPFLEQLQLLELGSQYTPLTIDKE-------------AFRNLPNLRILDLGSS-KIY 86 (844)
T ss_dssp CTTCCEEEEESCCC-CEECS-SSCSSCCSCSEEEECTTCCCCEECTT-------------TTSSCTTCCEEECTTC-CCC
T ss_pred CCCcCEEECCCCcC-CccCh-hHCcccccCeEEeCCCCCCccccCHH-------------HhcCCCCCCEEECCCC-cCc
Confidence 35666666666442 22111 01134566666666665322111000 0124566666666654 233
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHH-HHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQA-LARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~-l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
......+. .+++|++|++++| .+++..... ....+++|++|++++| .++.......+..+++|++|
T Consensus 87 ~~~p~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 87 FLHPDAFQ-GLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp EECTTSSC-SCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEE
T ss_pred ccCHhHcc-CCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEE
Confidence 22222222 5566666666654 333211111 1233566666666665 43332111223455555544
No 102
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.39 E-value=9.2e-09 Score=83.31 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=20.0
Q ss_pred cCCCCcEEeecCCCCCChHHH-HHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASL-IVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l-~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|........ ......+++|++|++++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 466777777777553222111 112344556666666555
No 103
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.39 E-value=1.6e-09 Score=78.46 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=43.9
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcC-CCCCEEeccCCCCCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNC-RLLAKMDLEECVLIT 145 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~l~ 145 (163)
.+++|++|+++++. +++.....+ ..+++|+.|+++++ .++......+ ..+ ++|++|++++| .++
T Consensus 197 ~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~-~~~~~~L~~L~L~~N-~~~ 261 (306)
T 2z66_A 197 SLSSLQVLNMSHNN-FFSLDTFPY-KCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQN-DFA 261 (306)
T ss_dssp TCTTCCEEECTTSC-CSBCCSGGG-TTCTTCCEEECTTS-CCCBCSSSSC-CCCCTTCCEEECTTC-CEE
T ss_pred CCCCCCEEECCCCc-cCccChhhc-cCcccCCEeECCCC-CCcccCHHHH-HhhhccCCEEEccCC-Cee
Confidence 67899999999963 443322223 37899999999985 5654332223 335 48999999998 443
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.38 E-value=5.5e-09 Score=80.56 Aligned_cols=40 Identities=25% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 10 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
+...+++|++|++++|.. ++..- .....+++|++|++++|
T Consensus 29 l~~~~~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~N 68 (487)
T 3oja_A 29 LRQSAWNVKELDLSGNPL-SQISA-ADLAPFTKLELLNLSSN 68 (487)
T ss_dssp TSTTGGGCCEEECCSSCC-CCCCG-GGGTTCTTCCEEECTTS
T ss_pred hcccCCCccEEEeeCCcC-CCCCH-HHHhCCCCCCEEEeeCC
Confidence 334455788888877653 22111 12245777777777776
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.38 E-value=6.1e-09 Score=75.13 Aligned_cols=109 Identities=24% Similarity=0.188 Sum_probs=55.7
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. +. +......+++|++|++++| .++..... .+..+++|++|+++++ .
T Consensus 74 ~~l~~L~~L~Ls~N~l-~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~-------------~~~~l~~L~~L~L~~N-~ 135 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQL-QS--LPLLGQTLPALTVLDVSFN-RLTSLPLG-------------ALRGLGELQELYLKGN-E 135 (290)
T ss_dssp SCCTTCCEEECCSSCC-SS--CCCCTTTCTTCCEEECCSS-CCCCCCSS-------------TTTTCTTCCEEECTTS-C
T ss_pred CCCCcCCEEECCCCcC-Cc--CchhhccCCCCCEEECCCC-cCcccCHH-------------HHcCCCCCCEEECCCC-C
Confidence 3567888888887653 21 1112245777888888876 33321100 1124567777777664 2
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
++.... ..+..+++|+.|+++++ .++.-.. .....+++|+.|++++|
T Consensus 136 l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 136 LKTLPP-GLLTPTPKLEKLSLANN-NLTELPA-GLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CCCCCT-TTTTTCTTCCEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCccCh-hhcccccCCCEEECCCC-cCCccCH-HHhcCcCCCCEEECCCC
Confidence 332111 11224566777777663 3442111 12233556666666665
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.37 E-value=6.1e-08 Score=65.81 Aligned_cols=108 Identities=14% Similarity=0.066 Sum_probs=71.3
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
.++|++|+++++.. +... .....+++|++|++++| .++..... .+..+++|++|+++++ .++
T Consensus 30 ~~~l~~L~L~~n~i-~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~~-------------~f~~l~~L~~L~Ls~N-~l~ 91 (193)
T 2wfh_A 30 PRDVTELYLDGNQF-TLVP--KELSNYKHLTLIDLSNN-RISTLSNQ-------------SFSNMTQLLTLILSYN-RLR 91 (193)
T ss_dssp CTTCCEEECCSSCC-CSCC--GGGGGCTTCCEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-CCC
T ss_pred CCCCCEEECCCCcC-chhH--HHhhcccCCCEEECCCC-cCCEeCHh-------------HccCCCCCCEEECCCC-ccC
Confidence 46899999998653 3211 23456899999999997 44432111 1236789999999985 454
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
......+. .+++|+.|+++++ .++.-.. .....+++|+.|++++|+
T Consensus 92 ~i~~~~f~-~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFD-GLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTT-TCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhC-CCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence 43322333 7899999999984 4653221 223457899999999874
No 107
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.37 E-value=1.8e-08 Score=80.20 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=18.4
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|.. +...- .....+++|++|++++|
T Consensus 47 ~l~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTI-SKLEP-ELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp GGTTCSEEECCSSCC-CCCCT-THHHHCTTCCEEECCSS
T ss_pred CCCcCcEEECCCCcc-CccCH-HHHhcccCcCEEECCCC
Confidence 356666666665432 21111 12234666666666665
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.37 E-value=1.1e-08 Score=78.80 Aligned_cols=76 Identities=17% Similarity=0.074 Sum_probs=41.9
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCC
Q psy9589 78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCP 157 (163)
Q Consensus 78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 157 (163)
+++|++|+++++ .+++... . ...+++|+.|+++++ .++. +......+++|+.|++++| .++...+..+...++
T Consensus 190 l~~L~~L~Ls~N-~l~~~~~-~-~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 190 FAKLKTLDLSSN-KLAFMGP-E-FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQ 262 (487)
T ss_dssp CTTCCEEECCSS-CCCEECG-G-GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTC-CBCHHHHHHHHTTCH
T ss_pred CCCCCEEECCCC-CCCCCCH-h-HcCCCCccEEEecCC-cCcc--cchhhccCCCCCEEEcCCC-CCcCcchHHHHHhCC
Confidence 566777777764 3443211 1 225677777777774 3442 1111234577888888887 666444444444554
Q ss_pred CCc
Q psy9589 158 RLE 160 (163)
Q Consensus 158 ~L~ 160 (163)
.|+
T Consensus 263 ~L~ 265 (487)
T 3oja_A 263 RVQ 265 (487)
T ss_dssp HHH
T ss_pred CCc
Confidence 443
No 109
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.35 E-value=3.2e-08 Score=78.65 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=18.8
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD 120 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~ 120 (163)
.+++|++|+++++. +.......+. .+++|+.|+++++..++.
T Consensus 247 ~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 247 NLKDLTDVEVYNCP-NLTKLPTFLK-ALPEMQLINVACNRGISG 288 (636)
T ss_dssp GCTTCCEEEEECCT-TCSSCCTTTT-TCSSCCEEECTTCTTSCH
T ss_pred ccCCCCEEEecCCc-CCccChHHHh-cCCCCCEEECcCCCCCcc
Confidence 34556666665542 2111111222 455666666655432443
No 110
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.33 E-value=2.5e-08 Score=77.72 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=59.7
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD 94 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 94 (163)
+++++|+++++.. +...-. ....+++|++|++++| .++..... .+..+++|++|+++++ .++.
T Consensus 28 ~~l~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~Ls~n-~i~~i~~~-------------~~~~l~~L~~L~L~~n-~l~~ 90 (570)
T 2z63_A 28 FSTKNLDLSFNPL-RHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG-------------AYQSLSHLSTLILTGN-PIQS 90 (570)
T ss_dssp SSCCEEECCSCCC-CEECTT-TTTTCSSCCEEECTTC-CCCEECTT-------------TTTTCTTCCEEECTTC-CCCE
T ss_pred ccccEEEccCCcc-CccChh-HhhCCCCceEEECCCC-cCCccCcc-------------cccCchhCCEEeCcCC-cCCc
Confidence 4567777766542 221111 1234667777777766 33322111 1124566777777664 2332
Q ss_pred HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
.....+. ++++|++|+++++ .++.-+... ...+++|++|++++| .++...+...+..+++|++|
T Consensus 91 ~~~~~~~-~l~~L~~L~L~~n-~l~~l~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 91 LALGAFS-GLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp ECTTTTT-TCTTCCEEECTTS-CCCCSTTCS-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEE
T ss_pred cCHhhhc-Ccccccccccccc-ccccCCCcc-ccccccccEEecCCC-ccceecChhhhcccCCCCEE
Confidence 2222222 5667777777664 333211111 234566777777766 44321111223455555544
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.33 E-value=2.4e-08 Score=78.09 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=23.8
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT 55 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~ 55 (163)
..+++|++|++++|.. ++... .....+++|++|++++| .++
T Consensus 350 ~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~L~~N-~l~ 390 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVF-TDSVF-QGCSTLKRLQTLILQRN-GLK 390 (562)
T ss_dssp SSCCCCCEEECCSSCC-CTTTT-TTCCSCSSCCEEECCSS-CCC
T ss_pred cCCCCceEEECCCCcc-ccchh-hhhcccCCCCEEECCCC-CcC
Confidence 4677888888877653 32111 11234677777777776 444
No 112
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.33 E-value=9.9e-08 Score=73.01 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=54.1
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++|++|+++++.. ++.. . ...+++|++|++++| .++... ...+++|++|+++++. +
T Consensus 40 ~l~~L~~L~Ls~n~l-~~~~--~-l~~l~~L~~L~Ls~n-~l~~~~----------------~~~l~~L~~L~Ls~N~-l 97 (457)
T 3bz5_A 40 QLATLTSLDCHNSSI-TDMT--G-IEKLTGLTKLICTSN-NITTLD----------------LSQNTNLTYLACDSNK-L 97 (457)
T ss_dssp HHTTCCEEECCSSCC-CCCT--T-GGGCTTCSEEECCSS-CCSCCC----------------CTTCTTCSEEECCSSC-C
T ss_pred HcCCCCEEEccCCCc-ccCh--h-hcccCCCCEEEccCC-cCCeEc----------------cccCCCCCEEECcCCC-C
Confidence 367888888888653 3321 1 345788888888887 344321 1145666666666642 3
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
+... + ..+++|++|+++++ .++.-. ...+++|++|++++|
T Consensus 98 ~~~~---~-~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 98 TNLD---V-TPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN 137 (457)
T ss_dssp SCCC---C-TTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS
T ss_pred ceee---c-CCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC
Confidence 3321 2 25666666666653 344321 233455666666655
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.32 E-value=1.7e-08 Score=68.43 Aligned_cols=109 Identities=20% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD 94 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 94 (163)
++|++|+++++.. +......+...+++|++|++++| .++..... .+..+++|++|+++++ .++.
T Consensus 29 ~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-------------~~~~l~~L~~L~Ls~N-~l~~ 92 (192)
T 1w8a_A 29 LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-------------AFEGASHIQELQLGEN-KIKE 92 (192)
T ss_dssp TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-------------TTTTCTTCCEEECCSC-CCCE
T ss_pred CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCC-CCCCcCHh-------------HcCCcccCCEEECCCC-cCCc
Confidence 4899999999753 32211112356899999999997 44432111 1236789999999985 4554
Q ss_pred HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
.....+. .+++|+.|+++++ .++..... ....+++|++|++++|+
T Consensus 93 ~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 93 ISNKMFL-GLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECSSSST-TCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCC
T ss_pred cCHHHhc-CCCCCCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCC
Confidence 3322233 6899999999984 56643212 22457899999999983
No 114
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.31 E-value=1.4e-08 Score=80.92 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=46.1
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD 94 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 94 (163)
++|++|+++++.. +...- .....+++|++|++++| .++......+ ..+++|++|+++++ .++.
T Consensus 25 ~~l~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-------------~~l~~L~~L~L~~n-~l~~ 87 (680)
T 1ziw_A 25 TNITVLNLTHNQL-RRLPA-ANFTRYSQLTSLDVGFN-TISKLEPELC-------------QKLPMLKVLNLQHN-ELSQ 87 (680)
T ss_dssp TTCSEEECCSSCC-CCCCG-GGGGGGTTCSEEECCSS-CCCCCCTTHH-------------HHCTTCCEEECCSS-CCCC
T ss_pred CCCcEEECCCCCC-CCcCH-HHHhCCCcCcEEECCCC-ccCccCHHHH-------------hcccCcCEEECCCC-ccCc
Confidence 6899999999753 32211 12355899999999997 4443211111 24566666666664 2332
Q ss_pred HHHHHHHHhCCCCCEEEecCC
Q psy9589 95 ASLIVLAQRCHQLHTLEVASC 115 (163)
Q Consensus 95 ~~~~~l~~~~~~L~~L~l~~~ 115 (163)
.....+. ++++|++|+++++
T Consensus 88 l~~~~~~-~l~~L~~L~L~~n 107 (680)
T 1ziw_A 88 LSDKTFA-FCTNLTELHLMSN 107 (680)
T ss_dssp CCTTTTT-TCTTCSEEECCSS
T ss_pred cChhhhc-cCCCCCEEECCCC
Confidence 1111122 4556666666553
No 115
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.31 E-value=2.2e-08 Score=78.90 Aligned_cols=128 Identities=12% Similarity=0.092 Sum_probs=83.5
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++++.|+++++.. +...- .+...+++|++|++++| .++...... +..+++|++|+++++. +
T Consensus 49 ~l~~l~~l~l~~~~l-~~lp~-~~~~~l~~L~~L~L~~n-~l~~~~~~~-------------~~~l~~L~~L~L~~n~-l 111 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM-RKLPA-ALLDSFRQVELLNLNDL-QIEEIDTYA-------------FAYAHTIQKLYMGFNA-I 111 (597)
T ss_dssp GGCCCSEEEESSCEE-SEECT-HHHHHCCCCSEEECTTS-CCCEECTTT-------------TTTCTTCCEEECCSSC-C
T ss_pred cCCCceEEEeeCCCC-CCcCH-HHHccCCCCcEEECCCC-CCCCCChHH-------------hcCCCCCCEEECCCCc-C
Confidence 357899999988642 22211 34466999999999997 454322111 1267899999999863 5
Q ss_pred CHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 93 TDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
+......+ ..+++|++|++++| .++.-. ..+...+++|++|++++| .++.... ..+..+++|+.|
T Consensus 112 ~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L 176 (597)
T 3oja_B 112 RYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNL 176 (597)
T ss_dssp CCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEE
T ss_pred CCCCHHHH-cCCCCCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCC-cCCCCCh-hhhhcCCcCcEE
Confidence 54332233 37899999999985 465322 122356899999999998 6654211 223467777765
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.30 E-value=1.4e-07 Score=72.21 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=17.0
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|.. +... ...+++|++|++++|
T Consensus 83 ~l~~L~~L~Ls~N~l-~~~~----~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 83 QNTNLTYLACDSNKL-TNLD----VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCTTCSEEECCSSCC-SCCC----CTTCTTCCEEECCSS
T ss_pred cCCCCCEEECcCCCC-ceee----cCCCCcCCEEECCCC
Confidence 355666666665442 2211 233555666666554
No 117
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.29 E-value=2.5e-06 Score=66.24 Aligned_cols=123 Identities=18% Similarity=0.120 Sum_probs=62.6
Q ss_pred cCCCCcEEeecCCCCCChHHHHHH--HHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVL--AQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
.+++|++|++++|. +++...... ...+++|++|++++| .++... ........+++|++|+++++
T Consensus 332 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-----------~~~~~~~~l~~L~~L~Ls~N- 397 (549)
T 2z81_A 332 HLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQ-----------KTGEILLTLKNLTSLDISRN- 397 (549)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHH-----------HHHHHGGGCTTCCEEECTTC-
T ss_pred cCccccEEEccCCc-cccccccchhhhhccccCcEEEccCC-cccccc-----------cchhhhhcCCCCCEEECCCC-
Confidence 35555555555543 233221111 123555666666555 332211 01122346788888888875
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
.++. +......+++|++|++++|. ++.-.- ...++|++|++++| .++.. ...+++|+.|
T Consensus 398 ~l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L 456 (549)
T 2z81_A 398 TFHP--MPDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNN-NLDSF-----SLFLPRLQEL 456 (549)
T ss_dssp CCCC--CCSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSS-CCSCC-----CCCCTTCCEE
T ss_pred CCcc--CChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCC-Chhhh-----cccCChhcEE
Confidence 3431 11112256788888888753 442110 01257888888887 65542 2356666654
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.28 E-value=4.1e-08 Score=72.79 Aligned_cols=61 Identities=21% Similarity=0.197 Sum_probs=27.0
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.+++|++|+++++ .+....... +..+++|+.|+++++ .++..... ....+++|+.|++++|
T Consensus 86 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 86 PVPNLRYLDLSSN-HLHTLDEFL-FSDLQALEVLLLYNN-HIVVVDRN-AFEDMAQLQKLYLSQN 146 (361)
T ss_dssp TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-cCCcCCHHH-hCCCcCCCEEECCCC-cccEECHH-HhCCcccCCEEECCCC
Confidence 3455666666553 233211111 124556666666553 34322111 1133455666666655
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.27 E-value=6.9e-08 Score=67.20 Aligned_cols=110 Identities=18% Similarity=0.095 Sum_probs=74.2
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. ..... .....+++|+.|++++| .++.... ..+..+++|++|+++++ .
T Consensus 61 ~~l~~L~~L~L~~N~l-~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-------------~~~~~l~~L~~L~Ls~N-~ 123 (229)
T 3e6j_A 61 DSLINLKELYLGSNQL-GALPV-GVFDSLTQLTVLDLGTN-QLTVLPS-------------AVFDRLVHLKELFMCCN-K 123 (229)
T ss_dssp TTCTTCCEEECCSSCC-CCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-C
T ss_pred hCccCCcEEECCCCCC-CCcCh-hhcccCCCcCEEECCCC-cCCccCh-------------hHhCcchhhCeEeccCC-c
Confidence 4689999999999764 22111 22356899999999998 4442211 11236789999999985 4
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECV 142 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 142 (163)
++. +..-...+++|+.|+++++ .++.-.. .....+++|+.|++++|+
T Consensus 124 l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 124 LTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred ccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 542 2111247899999999985 5654322 233557999999999983
No 120
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.27 E-value=2.1e-09 Score=78.29 Aligned_cols=12 Identities=17% Similarity=0.121 Sum_probs=6.7
Q ss_pred hCCcCCEEEecC
Q psy9589 39 RCHQLHTLEVAS 50 (163)
Q Consensus 39 ~~~~L~~L~l~~ 50 (163)
.+++|++|++++
T Consensus 74 ~l~~L~~L~L~~ 85 (313)
T 1ogq_A 74 NLPYLNFLYIGG 85 (313)
T ss_dssp GCTTCSEEEEEE
T ss_pred CCCCCCeeeCCC
Confidence 355566666553
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.26 E-value=6.4e-08 Score=64.55 Aligned_cols=111 Identities=15% Similarity=0.057 Sum_probs=72.4
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
.++|++|+++++.. +...- .....+++|++|++++| .++..... .+..+++|++|+++++ .++
T Consensus 27 ~~~l~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-------------~~~~l~~L~~L~l~~N-~l~ 89 (177)
T 2o6r_A 27 PSSATRLELESNKL-QSLPH-GVFDKLTQLTKLSLSQN-QIQSLPDG-------------VFDKLTKLTILYLHEN-KLQ 89 (177)
T ss_dssp CTTCSEEECCSSCC-CCCCT-TTTTTCTTCSEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-CCC
T ss_pred CCCCcEEEeCCCcc-cEeCH-HHhcCcccccEEECCCC-cceEeChh-------------HccCCCccCEEECCCC-Ccc
Confidence 47899999999653 32111 12355899999999997 44422110 1236789999999985 454
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
..... ....+++|+.|+++++ .++.-.. .....+++|++|++++| .++
T Consensus 90 ~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 90 SLPNG-VFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp CCCTT-TTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS-CBC
T ss_pred ccCHH-HhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC-Cee
Confidence 32222 2236899999999985 5653221 23355789999999998 443
No 122
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=1.7e-06 Score=61.70 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=58.1
Q ss_pred HHhcCCCCceEecCCCCCCCH-HHHHHHHHhCCCCCEEEecCCCCCCHH-HHHHHHHcCCCCCEEeccCCCCCCh-----
Q psy9589 74 LAENCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDT-GFQALARNCRLLAKMDLEECVLITD----- 146 (163)
Q Consensus 74 ~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~l~~----- 146 (163)
+...+|+|++|+|+++ .++. .++..+...+|+|+.|+|++ +.+++. .+..+ ..+ .|++|++++| .++.
T Consensus 165 ~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l-~~l-~L~~L~L~~N-pl~~~~~~~ 239 (267)
T 3rw6_A 165 IEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKI-KGL-KLEELWLDGN-SLCDTFRDQ 239 (267)
T ss_dssp HHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGG-TTS-CCSEEECTTS-TTGGGCSSH
T ss_pred HHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhc-ccC-CcceEEccCC-cCccccCcc
Confidence 3357899999999985 4544 23444555899999999988 456653 23222 223 8999999998 5553
Q ss_pred -HHHHHHHhCCCCCccCC
Q psy9589 147 -ATLIHLALGCPRLEKLI 163 (163)
Q Consensus 147 -~~~~~l~~~~~~L~~L~ 163 (163)
.-...+...+|+|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 22346677899998876
No 123
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.22 E-value=5.6e-08 Score=75.98 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=8.9
Q ss_pred cCCCCCEEeccCCCCCC
Q psy9589 129 NCRLLAKMDLEECVLIT 145 (163)
Q Consensus 129 ~~~~L~~L~l~~~~~l~ 145 (163)
.+++|++|++++| .++
T Consensus 471 ~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 471 HLQALQELNVASN-QLK 486 (562)
T ss_dssp SSCCCSEEECCSS-CCC
T ss_pred CCCCCCEEECCCC-CCC
Confidence 3556666666665 444
No 124
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.19 E-value=4.6e-07 Score=66.14 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=6.5
Q ss_pred CCcCCEEEecCC
Q psy9589 40 CHQLHTLEVASC 51 (163)
Q Consensus 40 ~~~L~~L~l~~~ 51 (163)
+++|++|++++|
T Consensus 99 l~~L~~L~Ls~n 110 (330)
T 1xku_A 99 LVKLERLYLSKN 110 (330)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 455555555554
No 125
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.18 E-value=1e-06 Score=70.02 Aligned_cols=118 Identities=7% Similarity=0.059 Sum_probs=72.2
Q ss_pred HhcCCCCcEEeecCCCCCChH------------H----HHHHHH--hCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHH
Q psy9589 11 AENCPNLYYLCLSGCSQLTDA------------S----LIVLAQ--RCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL 72 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~------------~----l~~i~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~ 72 (163)
...+++|++|++++|.. +.. . +..-.. .+++|++|++++|....... .
T Consensus 202 l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~------------ 267 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-T------------ 267 (636)
T ss_dssp GGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-T------------
T ss_pred HhcccCCCEEECcCCcc-ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-H------------
Confidence 34688999999999774 441 0 111112 68899999999884222110 0
Q ss_pred HHHhcCCCCceEecCCCCCCCH-HHHHHHHH-----hCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 73 SLAENCPNLYYLCLSGCSQLTD-ASLIVLAQ-----RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 73 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~-----~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
....+++|++|+++++..++. .....+.. .+++|+.|+++++ .++.-.-......+++|+.|++++| .++
T Consensus 268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~l~ 343 (636)
T 4eco_A 268 -FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLE 343 (636)
T ss_dssp -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-CCE
T ss_pred -HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-cCc
Confidence 112578899999988644766 33333431 2488999999885 4552111113355788888888887 554
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.13 E-value=3.3e-07 Score=62.24 Aligned_cols=103 Identities=21% Similarity=0.186 Sum_probs=70.9
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 92 (163)
.+++|++|++++|.. +. +......+++|++|++++| .++... .+ ..+++|++|+++++ .+
T Consensus 68 ~l~~L~~L~l~~n~l-~~--l~~~~~~~~~L~~L~L~~N-~l~~l~--~~-------------~~l~~L~~L~l~~N-~i 127 (198)
T 1ds9_A 68 GMENLRILSLGRNLI-KK--IENLDAVADTLEELWISYN-QIASLS--GI-------------EKLVNLRVLYMSNN-KI 127 (198)
T ss_dssp HHTTCCEEEEEEEEE-CS--CSSHHHHHHHCSEEEEEEE-ECCCHH--HH-------------HHHHHSSEEEESEE-EC
T ss_pred cCCCCCEEECCCCCc-cc--ccchhhcCCcCCEEECcCC-cCCcCC--cc-------------ccCCCCCEEECCCC-cC
Confidence 478999999999753 32 2234455789999999998 555421 11 24678999999995 46
Q ss_pred CHHH-HHHHHHhCCCCCEEEecCCCCCCHH---------HHHHHHHcCCCCCEEe
Q psy9589 93 TDAS-LIVLAQRCHQLHTLEVASCSQFTDT---------GFQALARNCRLLAKMD 137 (163)
Q Consensus 93 ~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~---------~~~~l~~~~~~L~~L~ 137 (163)
++.. +..+. .+++|++|++++++ ++.. ........+++|+.||
T Consensus 128 ~~~~~~~~l~-~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 128 TNWGEIDKLA-ALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CCHHHHHHHT-TTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CchhHHHHHh-cCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6543 34444 89999999999853 4332 1123346689999998
No 127
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.13 E-value=4.5e-09 Score=73.51 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=30.6
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCC---EEEecCCCCCCHHHHHHHHHcCCCCC-EEeccCCCCCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLH---TLEVASCSQFTDTGFQALARNCRLLA-KMDLEECVLIT 145 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~i~~~~~~~l~~~~~~L~-~L~l~~~~~l~ 145 (163)
.+++|++|+++++. ++. +.. ...+++|+ .|++++++.++.-... ....+++|+ .|++++| .++
T Consensus 103 ~l~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n-~l~ 169 (239)
T 2xwt_C 103 ELPLLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNN-GFT 169 (239)
T ss_dssp CCTTCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSC-CCC
T ss_pred CCCCCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCC-CCc
Confidence 35566666665532 222 111 22455555 6666664344432211 123456777 7777776 444
No 128
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.12 E-value=2.4e-08 Score=73.11 Aligned_cols=127 Identities=13% Similarity=0.004 Sum_probs=68.7
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTD 94 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 94 (163)
++|++|++++|.. +..... ....+++|++|++++| .++..... ....+++|++|+++++ .++.
T Consensus 193 ~~L~~L~l~~n~i-~~~~~~-~l~~l~~L~~L~L~~N-~l~~~~~~-------------~~~~l~~L~~L~L~~N-~l~~ 255 (332)
T 2ft3_A 193 ETLNELHLDHNKI-QAIELE-DLLRYSKLYRLGLGHN-QIRMIENG-------------SLSFLPTLRELHLDNN-KLSR 255 (332)
T ss_dssp SSCSCCBCCSSCC-CCCCTT-SSTTCTTCSCCBCCSS-CCCCCCTT-------------GGGGCTTCCEEECCSS-CCCB
T ss_pred CCCCEEECCCCcC-CccCHH-HhcCCCCCCEEECCCC-cCCcCChh-------------HhhCCCCCCEEECCCC-cCee
Confidence 4666677766542 221111 1234677777777776 33321110 1235788888888875 3441
Q ss_pred HHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHH-----cCCCCCEEeccCCCCCChHH-HHHHHhCCCCCccC
Q psy9589 95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR-----NCRLLAKMDLEECVLITDAT-LIHLALGCPRLEKL 162 (163)
Q Consensus 95 ~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~-----~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L 162 (163)
+..-...+++|+.|+++++ .++..+...+.. ..+.|+.|++++| .++... ....+..+++|+.+
T Consensus 256 --lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 256 --VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp --CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTE
T ss_pred --cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhh
Confidence 1111236888888888874 455443332221 1467888888887 444221 12334566777655
No 129
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.11 E-value=3.5e-08 Score=72.21 Aligned_cols=64 Identities=22% Similarity=0.154 Sum_probs=31.0
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
.+++|++|+++++ .+++.....+ ..+++|+.|+++++ .++.-. .....+++|++|++++| .++.
T Consensus 215 ~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N-~l~~ 278 (332)
T 2ft3_A 215 RYSKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNN-KLSRVP--AGLPDLKLLQVVYLHTN-NITK 278 (332)
T ss_dssp TCTTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSS-CCCBCC--TTGGGCTTCCEEECCSS-CCCB
T ss_pred CCCCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCC-cCeecC--hhhhcCccCCEEECCCC-CCCc
Confidence 3455666666553 2332211122 25666666666663 343111 11234566777777665 4443
No 130
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.10 E-value=3.8e-08 Score=71.62 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred hcCCCCcEEeecC-CCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 12 ENCPNLYYLCLSG-CSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 12 ~~~~~L~~L~l~~-~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
..+++|++|++++ +.. ....- .....+++|++|++++|
T Consensus 73 ~~l~~L~~L~L~~~n~l-~~~~p-~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNL-VGPIP-PAIAKLTQLHYLYITHT 111 (313)
T ss_dssp GGCTTCSEEEEEEETTE-ESCCC-GGGGGCTTCSEEEEEEE
T ss_pred hCCCCCCeeeCCCCCcc-cccCC-hhHhcCCCCCEEECcCC
Confidence 3577788888874 332 11111 11245777888888776
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=1.4e-06 Score=68.42 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=72.8
Q ss_pred hcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 12 ENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 12 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
..+++|++|++++|.. +. +......+++|+.|++++| .++... . ...+++|+.|+++++ .
T Consensus 460 ~~l~~L~~L~Ls~N~l-~~--lp~~~~~l~~L~~L~Ls~N-~l~~lp--~-------------l~~l~~L~~L~Ls~N-~ 519 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRL-RA--LPPALAALRCLEVLQASDN-ALENVD--G-------------VANLPRLQELLLCNN-R 519 (567)
T ss_dssp GGGTTCCEEECCSSCC-CC--CCGGGGGCTTCCEEECCSS-CCCCCG--G-------------GTTCSSCCEEECCSS-C
T ss_pred cccccCcEeecCcccc-cc--cchhhhcCCCCCEEECCCC-CCCCCc--c-------------cCCCCCCcEEECCCC-C
Confidence 4578999999999764 32 2123456999999999998 454321 1 126899999999995 4
Q ss_pred CCHHH-HHHHHHhCCCCCEEEecCCCCCCHH--HHHHHHHcCCCCCEEec
Q psy9589 92 LTDAS-LIVLAQRCHQLHTLEVASCSQFTDT--GFQALARNCRLLAKMDL 138 (163)
Q Consensus 92 ~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~L~~L~l 138 (163)
++... ...+. .+++|+.|+++++ .++.. ....+...+|+|+.|++
T Consensus 520 l~~~~~p~~l~-~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLV-SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGG-GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHh-cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 55443 33444 7999999999985 45432 23345556899999874
No 132
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.07 E-value=5.6e-08 Score=67.89 Aligned_cols=65 Identities=15% Similarity=0.061 Sum_probs=30.9
Q ss_pred cCCCCc---eEecCCCCCCCHHHHHHHHHhCCCCC-EEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCC
Q psy9589 77 NCPNLY---YLCLSGCSQLTDASLIVLAQRCHQLH-TLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLIT 145 (163)
Q Consensus 77 ~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~ 145 (163)
.+++|+ +|+++++..++......+ ..+++|+ .|+++++ .++.-+.. .... ++|++|++++|..++
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n-~l~~i~~~-~~~~-~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN-GFTSVQGY-AFNG-TKLDAVYLNKNKYLT 193 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC-CCCEECTT-TTTT-CEEEEEECTTCTTCC
T ss_pred cccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC-CCcccCHh-hcCC-CCCCEEEcCCCCCcc
Confidence 345555 677766423432221112 2566677 7777663 34421111 1122 567777777663244
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=1.5e-05 Score=56.85 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=57.3
Q ss_pred HHHhCCcCCEEEecCCCCCCh-HHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH-HHHHHHHhCCCCCEEEec
Q psy9589 36 LAQRCHQLHTLEVASCSQFTD-TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA-SLIVLAQRCHQLHTLEVA 113 (163)
Q Consensus 36 i~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~ 113 (163)
+...+|+|+.|++++| .++. .++. .....+|+|+.|+|+++ .+++. .+..+. .+ +|++|++.
T Consensus 165 ~~~~l~~L~~L~Ls~N-~l~~l~~l~------------~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~ 228 (267)
T 3rw6_A 165 IEENIPELLSLNLSNN-RLYRLDDMS------------SIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLD 228 (267)
T ss_dssp HHHHCTTCCEEECTTS-CCCCCGGGT------------THHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECT
T ss_pred HHhhCCCCCEEECCCC-CCCCCccch------------hHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEcc
Confidence 4467999999999998 4443 2221 12236899999999985 45543 333332 34 89999999
Q ss_pred CCCCCCH------HHHHHHHHcCCCCCEEecc
Q psy9589 114 SCSQFTD------TGFQALARNCRLLAKMDLE 139 (163)
Q Consensus 114 ~~~~i~~------~~~~~l~~~~~~L~~L~l~ 139 (163)
+++ +.. .....+...+|+|+.||=.
T Consensus 229 ~Np-l~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 229 GNS-LCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp TST-TGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred CCc-CccccCcchhHHHHHHHHCcccCeECCc
Confidence 865 442 2233456679999998744
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.01 E-value=1.8e-07 Score=62.30 Aligned_cols=121 Identities=14% Similarity=0.071 Sum_probs=75.1
Q ss_pred CcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHH
Q psy9589 17 LYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDAS 96 (163)
Q Consensus 17 L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 96 (163)
.+.++++++. ++... ....++|++|+++++ .++..... ....+++|++|+++++ .++...
T Consensus 9 ~~~l~~~~~~-l~~~p----~~~~~~l~~L~l~~n-~l~~~~~~-------------~~~~l~~L~~L~l~~n-~l~~~~ 68 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVP----TGIPSSATRLELESN-KLQSLPHG-------------VFDKLTQLTKLSLSQN-QIQSLP 68 (177)
T ss_dssp TTEEECCSSC-CSSCC----TTCCTTCSEEECCSS-CCCCCCTT-------------TTTTCTTCSEEECCSS-CCCCCC
T ss_pred CCEEEecCCC-CccCC----CCCCCCCcEEEeCCC-cccEeCHH-------------HhcCcccccEEECCCC-cceEeC
Confidence 5677777744 33211 122578999999997 44422111 1236789999999985 454322
Q ss_pred HHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 97 LIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 97 ~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
...+ ..+++|+.|+++++ .++.... .....+++|++|++++| .++.. ...++..+++|+.|
T Consensus 69 ~~~~-~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 69 DGVF-DKLTKLTILYLHEN-KLQSLPN-GVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKI 129 (177)
T ss_dssp TTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEE
T ss_pred hhHc-cCCCccCEEECCCC-CccccCH-HHhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEE
Confidence 2222 37899999999985 5664321 22345799999999998 66532 12334567777765
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.98 E-value=3.7e-07 Score=61.89 Aligned_cols=119 Identities=17% Similarity=0.036 Sum_probs=74.1
Q ss_pred cEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHH
Q psy9589 18 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASL 97 (163)
Q Consensus 18 ~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 97 (163)
+.++++++. ++...- ...++|++|+++++ .++... . .+..+++|++|+++++ .++....
T Consensus 13 ~~l~~~~~~-l~~ip~----~~~~~l~~L~L~~n-~i~~ip-~-------------~~~~l~~L~~L~Ls~N-~i~~i~~ 71 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPK----GIPRDVTELYLDGN-QFTLVP-K-------------ELSNYKHLTLIDLSNN-RISTLSN 71 (193)
T ss_dssp TEEECTTSC-CSSCCS----CCCTTCCEEECCSS-CCCSCC-G-------------GGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CEEEcCCCC-CCcCCC----CCCCCCCEEECCCC-cCchhH-H-------------HhhcccCCCEEECCCC-cCCEeCH
Confidence 567777643 222110 12468999999997 444221 1 1236899999999985 4554322
Q ss_pred HHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 98 IVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 98 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
..+. ++++|++|+++++ .++...... ...+++|+.|++++| .++.-. ...+..+++|+.|
T Consensus 72 ~~f~-~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L 131 (193)
T 2wfh_A 72 QSFS-NMTQLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHL 131 (193)
T ss_dssp TTTT-TCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEE
T ss_pred hHcc-CCCCCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEE
Confidence 2333 7899999999985 465433222 345799999999998 665421 1223456666654
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.94 E-value=1.3e-07 Score=64.04 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=74.6
Q ss_pred cEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHH
Q psy9589 18 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASL 97 (163)
Q Consensus 18 ~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 97 (163)
++++++++. ++...- ...++|++|+++++ .++..... .++..+++|++|+++++ .++....
T Consensus 11 ~~l~~s~~~-l~~ip~----~~~~~l~~L~l~~n-~i~~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~ 71 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPR----DIPLHTTELLLNDN-ELGRISSD------------GLFGRLPHLVKLELKRN-QLTGIEP 71 (192)
T ss_dssp TEEECTTSC-CSSCCS----CCCTTCSEEECCSC-CCCSBCCS------------CSGGGCTTCCEEECCSS-CCCCBCT
T ss_pred CEEEcCCCC-cCcCcc----CCCCCCCEEECCCC-cCCccCCc------------cccccCCCCCEEECCCC-CCCCcCH
Confidence 678887754 222110 12348999999997 44322110 01236899999999995 4554322
Q ss_pred HHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 98 IVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 98 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
..+. .+++|++|+++++ .++..... ....+++|++|++++| .++... ...+..+++|+.|
T Consensus 72 ~~~~-~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L 131 (192)
T 1w8a_A 72 NAFE-GASHIQELQLGEN-KIKEISNK-MFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSL 131 (192)
T ss_dssp TTTT-TCTTCCEEECCSC-CCCEECSS-SSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEE
T ss_pred hHcC-CcccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCC-cCCeeC-HHHhhcCCCCCEE
Confidence 3333 7899999999984 56643322 2245799999999998 666421 1223456666655
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.92 E-value=1.2e-06 Score=70.77 Aligned_cols=111 Identities=21% Similarity=0.072 Sum_probs=69.4
Q ss_pred HhcCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCC
Q psy9589 11 AENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCS 90 (163)
Q Consensus 11 ~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 90 (163)
...+++|+.|+|++|... ...- .+ ..+++|++|+|++| .++... . ....+++|++|+|+++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~-~~-~~l~~L~~L~Ls~N-~l~~lp-~-------------~~~~l~~L~~L~Ls~N- 280 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISA-NI-FKYDFLTRLYLNGN-SLTELP-A-------------EIKNLSNLRVLDLSHN- 280 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCG-GG-GGCCSCSCCBCTTS-CCSCCC-G-------------GGGGGTTCCEEECTTS-
T ss_pred hccCCCCcEEECCCCCCC-CCCh-hh-cCCCCCCEEEeeCC-cCcccC-h-------------hhhCCCCCCEEeCcCC-
Confidence 345688889999886632 1110 11 25888999999887 443110 0 0136789999999985
Q ss_pred CCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 91 QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 91 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
.++.. ...+ ..+++|++|+|++| .++.-. .-...+++|+.|++++| .++.
T Consensus 281 ~l~~l-p~~~-~~l~~L~~L~L~~N-~l~~lp--~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 281 RLTSL-PAEL-GSCFQLKYFYFFDN-MVTTLP--WEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp CCSSC-CSSG-GGGTTCSEEECCSS-CCCCCC--SSTTSCTTCCCEECTTS-CCCS
T ss_pred cCCcc-Chhh-cCCCCCCEEECCCC-CCCccC--hhhhcCCCccEEeCCCC-ccCC
Confidence 45511 1223 37889999999885 455221 11355789999999998 6664
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.89 E-value=5.1e-07 Score=72.84 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=66.0
Q ss_pred HHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCC
Q psy9589 37 AQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 116 (163)
Q Consensus 37 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 116 (163)
...+++|+.|++++|. +..... .+ ..+++|++|+|+++ .++. ....+ ..+++|+.|+|+++
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~-------------~~-~~l~~L~~L~Ls~N-~l~~-lp~~~-~~l~~L~~L~Ls~N- 280 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISA-------------NI-FKYDFLTRLYLNGN-SLTE-LPAEI-KNLSNLRVLDLSHN- 280 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCG-------------GG-GGCCSCSCCBCTTS-CCSC-CCGGG-GGGTTCCEEECTTS-
T ss_pred hccCCCCcEEECCCCC-CCCCCh-------------hh-cCCCCCCEEEeeCC-cCcc-cChhh-hCCCCCCEEeCcCC-
Confidence 4567899999999984 332100 01 15789999999995 4551 11223 47899999999985
Q ss_pred CCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccCC
Q psy9589 117 QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKLI 163 (163)
Q Consensus 117 ~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 163 (163)
.++. +..-...+++|++|++++| .++. +..-+..+++|+.|+
T Consensus 281 ~l~~--lp~~~~~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 281 RLTS--LPAELGSCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSS--CCSSGGGGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEE
T ss_pred cCCc--cChhhcCCCCCCEEECCCC-CCCc--cChhhhcCCCccEEe
Confidence 4662 1122345789999999998 6653 222245677777663
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.87 E-value=4.5e-06 Score=66.26 Aligned_cols=62 Identities=26% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHH
Q psy9589 78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATL 149 (163)
Q Consensus 78 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 149 (163)
+++|+.|+++++ .++. +...+++|+.|++++| .++.- .....++++|+.|++++| .++....
T Consensus 240 l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~L~~L~L~~N-~l~~~~~ 301 (622)
T 3g06_A 240 PSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRN-QLTRL--PESLIHLSSETTVNLEGN-PLSERTL 301 (622)
T ss_dssp CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCCSC--CGGGGGSCTTCEEECCSC-CCCHHHH
T ss_pred CCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCC-CCCcC--CHHHhhccccCEEEecCC-CCCCcCH
Confidence 455666666553 2321 1114566666666664 34421 111244677777777776 5655433
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=7.6e-07 Score=65.09 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=83.2
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
..++..+.+.+. +.......+...|++|+.|+++++ .++..+-. .+..|++|+.|++... +.
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-------------aF~~~~~L~~l~l~~n--i~ 262 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-------------TFAQKKYLLKIKLPHN--LK 262 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-------------TTTTCTTCCEEECCTT--CC
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-------------hhhCCCCCCEEECCcc--cc
Confidence 456667777663 566777777788999999999986 34432211 2347899999999773 44
Q ss_pred HHHHHHHHHhCCCCC-EEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 94 DASLIVLAQRCHQLH-TLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~-~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
.-+-.++ .+|++|+ .+.+.. .++.-+-. .+.+|++|+.|+++.+ .++.-. ...+.+|++|+.+
T Consensus 263 ~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~n-~i~~I~-~~aF~~~~~L~~l 326 (329)
T 3sb4_A 263 TIGQRVF-SNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATGD-KITTLG-DELFGNGVPSKLI 326 (329)
T ss_dssp EECTTTT-TTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECSS-CCCEEC-TTTTCTTCCCCEE
T ss_pred eehHHHh-hCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCCC-ccCccc-hhhhcCCcchhhh
Confidence 3222333 4899999 999976 34433322 3356899999999875 554421 2335788888865
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.67 E-value=5.7e-06 Score=54.81 Aligned_cols=103 Identities=19% Similarity=0.055 Sum_probs=56.6
Q ss_pred CCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHH
Q psy9589 16 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA 95 (163)
Q Consensus 16 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 95 (163)
..++|+++++. ++.... ...++|++|++++| .++...-. .+..+++|++|+++++ .++..
T Consensus 10 ~~~~l~~s~n~-l~~ip~----~~~~~l~~L~L~~N-~i~~~~~~-------------~~~~l~~L~~L~Ls~N-~l~~l 69 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPT----GIPTTTQVLYLYDN-QITKLEPG-------------VFDRLTQLTRLDLDNN-QLTVL 69 (170)
T ss_dssp ETTEEECTTSC-CSSCCS----CCCTTCSEEECCSS-CCCCCCTT-------------TTTTCTTCSEEECCSS-CCCCC
T ss_pred CCCEEEeCCCC-cCccCc----cCCCCCcEEEcCCC-cCCccChh-------------hhcCcccCCEEECCCC-CcCcc
Confidence 34667777643 222110 11367888888876 33322100 1125678888888874 34422
Q ss_pred HHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 96 SLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 96 ~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.. ..+..+++|+.|+++++ .++.-.. .....+++|++|++++|
T Consensus 70 ~~-~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 70 PA-GVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred Ch-hhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCC
Confidence 21 12236788888888774 4553221 12344678888888887
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=5e-06 Score=60.69 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=21.7
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
+++|++|.+++ .++...+..+...+++|+.|+++++
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n 59 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNA 59 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcc
Confidence 34566677665 2355555555555667777777665
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.62 E-value=7.5e-06 Score=54.50 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=46.6
Q ss_pred CcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCH
Q psy9589 41 HQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD 120 (163)
Q Consensus 41 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~ 120 (163)
++|++|++++| .++..... .+..+++|++|+++++ .++.... ..+..+++|+.|+++++ .++.
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~-------------~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~ 95 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPG-------------VFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDN-HLKS 95 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTT-------------TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCC
T ss_pred CCCcEEEeCCC-CccccCHH-------------HhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCC-ccce
Confidence 67788888776 33321100 1125677888888774 3443211 12236778888888774 4543
Q ss_pred HHHHHHHHcCCCCCEEeccCC
Q psy9589 121 TGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 121 ~~~~~l~~~~~~L~~L~l~~~ 141 (163)
-. ......+++|+.|++++|
T Consensus 96 l~-~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 96 IP-RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CC-TTTTTTCTTCSEEECCSS
T ss_pred eC-HHHhccccCCCEEEeCCC
Confidence 22 112244677888888877
No 144
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.59 E-value=6.5e-05 Score=59.66 Aligned_cols=110 Identities=18% Similarity=0.062 Sum_probs=57.2
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
+++|++|++++|.. +. +....++|+.|++++| .++... ...++|+.|+++++ .++
T Consensus 180 ~~~L~~L~Ls~N~l-~~-----l~~~~~~L~~L~L~~N-~l~~l~-----------------~~~~~L~~L~Ls~N-~L~ 234 (622)
T 3g06_A 180 PSGLQELSVSDNQL-AS-----LPTLPSELYKLWAYNN-RLTSLP-----------------ALPSGLKELIVSGN-RLT 234 (622)
T ss_dssp CTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS-CCSSCC-----------------CCCTTCCEEECCSS-CCS
T ss_pred CCCCcEEECCCCCC-CC-----CCCccchhhEEECcCC-cccccC-----------------CCCCCCCEEEccCC-ccC
Confidence 46677777766542 22 1112456667776665 232110 12356777777764 343
Q ss_pred HHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
... ..+++|+.|+++++ .++.-. ..+++|+.|++++| .++. +...+..+++|+.|
T Consensus 235 ~lp-----~~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N-~L~~--lp~~l~~l~~L~~L 289 (622)
T 3g06_A 235 SLP-----VLPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTR--LPESLIHLSSETTV 289 (622)
T ss_dssp CCC-----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCCS--CCGGGGGSCTTCEE
T ss_pred cCC-----CCCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCC-CCCc--CCHHHhhccccCEE
Confidence 211 35567777777764 344211 14567777777776 5552 22223455666554
No 145
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.44 E-value=1.9e-05 Score=60.36 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=5.9
Q ss_pred CCcCCEEEecCC
Q psy9589 40 CHQLHTLEVASC 51 (163)
Q Consensus 40 ~~~L~~L~l~~~ 51 (163)
+++|++|++++|
T Consensus 152 l~~L~~L~l~~N 163 (454)
T 1jl5_A 152 SSFLKIIDVDNN 163 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 444555555444
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.37 E-value=1.5e-05 Score=52.71 Aligned_cols=85 Identities=18% Similarity=0.076 Sum_probs=56.3
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
.++|++|++++|.. +...- .....+++|++|++++| .++.... .++..+++|++|+++++ .++
T Consensus 29 ~~~l~~L~L~~N~i-~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~-------------~~f~~l~~L~~L~L~~N-~l~ 91 (170)
T 3g39_A 29 PTTTQVLYLYDNQI-TKLEP-GVFDRLTQLTRLDLDNN-QLTVLPA-------------GVFDKLTQLTQLSLNDN-QLK 91 (170)
T ss_dssp CTTCSEEECCSSCC-CCCCT-TTTTTCTTCSEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-CCC
T ss_pred CCCCcEEEcCCCcC-CccCh-hhhcCcccCCEEECCCC-CcCccCh-------------hhccCCCCCCEEECCCC-ccC
Confidence 47899999999763 22111 12245899999999998 4443211 11236789999999985 454
Q ss_pred HHHHHHHHHhCCCCCEEEecCCC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCS 116 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~ 116 (163)
...... ...+++|+.|++++++
T Consensus 92 ~~~~~~-~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 92 SIPRGA-FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCTTT-TTTCTTCCEEECCSSC
T ss_pred EeCHHH-hcCCCCCCEEEeCCCC
Confidence 322222 3378999999999854
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.34 E-value=1.6e-05 Score=52.82 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=56.3
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCC
Q psy9589 14 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLT 93 (163)
Q Consensus 14 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 93 (163)
.++|++|++++|.. +... ......+++|++|++++| .++.... .++..+++|++|+++++ .++
T Consensus 32 ~~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~-------------~~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 32 PTDKQRLWLNNNQI-TKLE-PGVFDHLVNLQQLYFNSN-KLTAIPT-------------GVFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp CTTCSEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-------------TTTTTCTTCCEEECCSS-CCC
T ss_pred CCCCcEEEeCCCCc-cccC-HHHhcCCcCCCEEECCCC-CCCccCh-------------hHhCCcchhhEEECCCC-ccc
Confidence 37899999999763 2211 112346899999999998 4443210 01236789999999985 454
Q ss_pred HHHHHHHHHhCCCCCEEEecCCC
Q psy9589 94 DASLIVLAQRCHQLHTLEVASCS 116 (163)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~ 116 (163)
.... .....+++|+.|++++++
T Consensus 95 ~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 95 SIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCT-TTTTTCTTCSEEECCSSC
T ss_pred eeCH-HHhccccCCCEEEeCCCC
Confidence 3221 223378999999999864
No 148
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.32 E-value=0.00018 Score=56.55 Aligned_cols=10 Identities=20% Similarity=0.072 Sum_probs=5.5
Q ss_pred CCcEEeecCC
Q psy9589 16 NLYYLCLSGC 25 (163)
Q Consensus 16 ~L~~L~l~~~ 25 (163)
+|++|+++++
T Consensus 60 ~L~~L~Ls~n 69 (571)
T 3cvr_A 60 QFSELQLNRL 69 (571)
T ss_dssp TCSEEECCSS
T ss_pred CccEEEeCCC
Confidence 5555555554
No 149
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.30 E-value=5.6e-05 Score=57.71 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=19.0
Q ss_pred cCCCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCC
Q psy9589 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 51 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~ 51 (163)
.+++|++|++++|.. +. +....++|++|++++|
T Consensus 151 ~l~~L~~L~l~~N~l-~~-----lp~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSL-KK-----LPDLPPSLEFIAAGNN 183 (454)
T ss_dssp TCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCcC-cc-----cCCCcccccEEECcCC
Confidence 456777777777542 21 1112347777777776
No 150
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.15 E-value=9.2e-05 Score=58.23 Aligned_cols=66 Identities=11% Similarity=0.000 Sum_probs=32.5
Q ss_pred CCCceEecCCCCCCCHHHH--HHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHH
Q psy9589 79 PNLYYLCLSGCSQLTDASL--IVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATL 149 (163)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 149 (163)
++|++|+++++ .++.... ..+....+.|+.|++++| .++.-. ..+. .+++|+.|++++| .++....
T Consensus 180 ~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l~~L~~L~L~~N-~l~~~~p 247 (571)
T 3cvr_A 180 ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SLDPTCTIILEDN-PLSSRIR 247 (571)
T ss_dssp TTCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCC-GGGG-GSCTTEEEECCSS-SCCHHHH
T ss_pred CCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecC-HHHh-cCCCCCEEEeeCC-cCCCcCH
Confidence 56777777664 2331100 011112233377777764 454211 1122 3788888888887 6766443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.96 E-value=9.3e-05 Score=54.18 Aligned_cols=86 Identities=10% Similarity=0.083 Sum_probs=44.6
Q ss_pred HhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589 38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ 117 (163)
Q Consensus 38 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 117 (163)
..+++|++|+|+++..++..... .+..+++|++|+|+++ .++......+ ..+++|+.|+|+++ .
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~-------------~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELR-------------DLRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFN-A 91 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGG-------------GSCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSS-C
T ss_pred CCCCCeeEEEccCCCCCCCcChh-------------HhccccCCCEEECCCC-ccceeCHHHh-cCCcCCCEEeCCCC-c
Confidence 34566777777752244322100 1125677777777774 4543222222 26777777777773 4
Q ss_pred CCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 118 FTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 118 i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
++.-.. ......+ |+.|++.+|
T Consensus 92 l~~~~~-~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSW-KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CSCCCS-TTTCSCC-CCEEECCSS
T ss_pred cceeCH-HHcccCC-ceEEEeeCC
Confidence 443211 1112223 777777776
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.35 E-value=0.00069 Score=49.51 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=46.3
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCCh
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITD 146 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 146 (163)
.+++|++|+|++.+.++......+. ++++|+.|+|+++ .++...- ..+.++++|++|+|++| .++.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~ 94 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFN-ALES 94 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSS-CCSC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCC-ccce
Confidence 5678999999863455543323333 7899999999985 5765332 23356899999999998 6653
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.07 E-value=3.9e-05 Score=56.48 Aligned_cols=36 Identities=14% Similarity=-0.001 Sum_probs=23.6
Q ss_pred CCCcEEeecCCCCCChHHHHHHHHhCCcCCEEEecCCC
Q psy9589 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 52 (163)
Q Consensus 15 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~ 52 (163)
+++++|+|++|. ++...- .....+++|++|++++|.
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQK-GAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCC-CSEECT-TSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCc-CCCcCH-HHHcCCCCCCEEECcCCC
Confidence 578889998865 332111 122457889999998874
No 154
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.87 E-value=0.00022 Score=52.39 Aligned_cols=86 Identities=9% Similarity=-0.013 Sum_probs=50.0
Q ss_pred CCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCC
Q psy9589 40 CHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFT 119 (163)
Q Consensus 40 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~ 119 (163)
.+++++|++++| .++..... .+..+++|++|+|+++........ ..+.+++++..+.+.+++.++
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~-------------~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKG-------------AFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTT-------------SSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCCEEEccCC-cCCCcCHH-------------HHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCccc
Confidence 468999999997 55432111 123688999999998642221111 112356777665554445555
Q ss_pred HHHHHHHHHcCCCCCEEeccCC
Q psy9589 120 DTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 120 ~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.-.- .....+++|++|++++|
T Consensus 94 ~l~~-~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 94 YINP-EAFQNLPNLQYLLISNT 114 (350)
T ss_dssp EECT-TSBCCCTTCCEEEEEEE
T ss_pred ccCc-hhhhhcccccccccccc
Confidence 3221 12245678888888776
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.09 E-value=0.0077 Score=44.83 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=64.6
Q ss_pred cCCCCcEEeecCCCC-CChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 13 NCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 13 ~~~~L~~L~l~~~~~-~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
.|++|+.+.+..... +.+ .....|++|+.+.+.. .++..+-. .+..|++|+.+.+.. .
T Consensus 263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~-------------aF~~c~~L~~i~lp~--~ 321 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPES-------------VFAGCISLKSIDIPE--G 321 (394)
T ss_dssp TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTT-------------TTTTCTTCCEEECCT--T
T ss_pred ecccccEEecccccceecC----cccccccccccccCCC--cccccCce-------------eecCCCCcCEEEeCC--c
Confidence 467777777765321 222 1234578888888864 23222111 123678889888854 2
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCCCCCccC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 162 (163)
++.-+-.++ .+|.+|+++.|.. .++.-+-. .+.+|++|+.+++..+ .. .. .-+..|..|+.+
T Consensus 322 v~~I~~~aF-~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~~-~~---~~-~~~~~~~~L~~i 383 (394)
T 4gt6_A 322 ITQILDDAF-AGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSGS-RS---QW-NAISTDSGLQNL 383 (394)
T ss_dssp CCEECTTTT-TTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESSC-HH---HH-HTCBCCCCC---
T ss_pred ccEehHhHh-hCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECCc-ee---eh-hhhhccCCCCEE
Confidence 322222222 3788999998854 23332222 2356888999988874 21 12 223466666654
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.87 E-value=0.0015 Score=49.06 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=7.9
Q ss_pred HcCCCCCEEeccC
Q psy9589 128 RNCRLLAKMDLEE 140 (163)
Q Consensus 128 ~~~~~L~~L~l~~ 140 (163)
.+|++|+.+.+..
T Consensus 297 ~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 297 EGCPKLARFEIPE 309 (401)
T ss_dssp TTCTTCCEECCCT
T ss_pred hCCccCCeEEeCC
Confidence 4466666666664
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.78 E-value=0.02 Score=43.02 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=26.2
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEEC 141 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 141 (163)
.|++|+.+.+.. .+..-+-.++ .+|++|+.+.|.. +++.-+-.+ +.+| +|+.+++.++
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred CCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 455666666543 1222111222 2566666666643 233212111 2335 6666666654
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.05 E-value=0.017 Score=42.93 Aligned_cols=100 Identities=18% Similarity=0.355 Sum_probs=60.8
Q ss_pred HhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCC
Q psy9589 38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ 117 (163)
Q Consensus 38 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 117 (163)
..|++|+.+.+... +...+-. .+..|+.|+.+.+.. .+..-+-.. +.+|++|+++.|.. .
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~-------------aF~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~ 321 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTG-------------AFMNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPE--G 321 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTT-------------TTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCT--T
T ss_pred eecccccEEecccc--cceecCc-------------ccccccccccccCCC--cccccCcee-ecCCCCcCEEEeCC--c
Confidence 45788888888653 2211111 123678899998864 233222222 34799999999964 3
Q ss_pred CCHHHHHHHHHcCCCCCEEeccCC-CCCChHHHHHHHhCCCCCccC
Q psy9589 118 FTDTGFQALARNCRLLAKMDLEEC-VLITDATLIHLALGCPRLEKL 162 (163)
Q Consensus 118 i~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L 162 (163)
++.-+-. .+.+|.+|+.+.+..+ ..|.+. .+.+|++|+++
T Consensus 322 v~~I~~~-aF~~C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i 362 (394)
T 4gt6_A 322 ITQILDD-AFAGCEQLERIAIPSSVTKIPES----AFSNCTALNNI 362 (394)
T ss_dssp CCEECTT-TTTTCTTCCEEEECTTCCBCCGG----GGTTCTTCCEE
T ss_pred ccEehHh-HhhCCCCCCEEEECcccCEEhHh----HhhCCCCCCEE
Confidence 4432222 3356899999999763 234343 35789999865
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.08 E-value=0.0084 Score=44.64 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=42.8
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccCCCCCChHHHHHHHhCC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGC 156 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 156 (163)
.|++|+.+++.. .+..-+-.++ .+|.+|+.+.|.. +++.-+-. ...+|++|+.+++..+ ++.. ...+..|
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~-aF~~C~~L~~i~lp~~--~~~~--~~~F~~c 387 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPL--SLRKIGAN-AFQGCINLKKVELPKR--LEQY--RYDFEDT 387 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTT-TBTTCTTCCEEEEEGG--GGGG--GGGBCTT
T ss_pred CCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECc--cccEehHH-HhhCCCCCCEEEECCC--CEEh--hheecCC
Confidence 577888888754 2332222233 3788888888854 24332222 2356888888888763 3221 2235677
Q ss_pred CCCcc
Q psy9589 157 PRLEK 161 (163)
Q Consensus 157 ~~L~~ 161 (163)
++|+.
T Consensus 388 ~~L~~ 392 (394)
T 4fs7_A 388 TKFKW 392 (394)
T ss_dssp CEEEE
T ss_pred CCCcE
Confidence 77765
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.02 E-value=0.043 Score=40.40 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=6.3
Q ss_pred hCCcCCEEEecC
Q psy9589 39 RCHQLHTLEVAS 50 (163)
Q Consensus 39 ~~~~L~~L~l~~ 50 (163)
.|.+|+.+.+..
T Consensus 238 ~~~~L~~i~lp~ 249 (379)
T 4h09_A 238 GMKALDEIAIPK 249 (379)
T ss_dssp TCSSCCEEEECT
T ss_pred CCccceEEEcCC
Confidence 355555555543
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.93 E-value=0.11 Score=38.29 Aligned_cols=104 Identities=17% Similarity=0.325 Sum_probs=60.7
Q ss_pred cCCCCcEEeecCCC-CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 13 NCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 13 ~~~~L~~L~l~~~~-~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
.+.+|+.+.+.... .+.+ .....|.+|+.+.+... +...+.. .+..|++|+.+.+.+. .
T Consensus 238 ~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~--i~~i~~~-------------aF~~c~~L~~i~l~~~-~ 297 (379)
T 4h09_A 238 GMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAK--VKTVPYL-------------LCSGCSNLTKVVMDNS-A 297 (379)
T ss_dssp TCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCC--CSEECTT-------------TTTTCTTCCEEEECCT-T
T ss_pred CCccceEEEcCCCccEeCc----cccceeehhcccccccc--ceecccc-------------cccccccccccccccc-c
Confidence 46777777776532 1222 23356888999998753 3322111 1236889999998652 2
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEEeccC
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEE 140 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 140 (163)
+..-+-.+ +.+|++|+++.|.. .++.-+-.+ ..+|++|+.+.+..
T Consensus 298 i~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 298 IETLEPRV-FMDCVKLSSVTLPT--ALKTIQVYA-FKNCKALSTISYPK 342 (379)
T ss_dssp CCEECTTT-TTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCCCCCCT
T ss_pred cceehhhh-hcCCCCCCEEEcCc--cccEEHHHH-hhCCCCCCEEEECC
Confidence 32222222 24789999999964 244322222 35688899888865
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.68 E-value=0.35 Score=35.82 Aligned_cols=98 Identities=13% Similarity=0.228 Sum_probs=57.6
Q ss_pred cCCCCcEEeecCCC-CCChHHHHHHHHhCCcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCC
Q psy9589 13 NCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQ 91 (163)
Q Consensus 13 ~~~~L~~L~l~~~~-~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 91 (163)
.+++|+.+.+.... .+.+. ....|++|+.++|... ++..+-. .+..|.+|+.+.+...
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~-------------aF~~c~~L~~i~lp~~-- 353 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYL--VEEIGKR-------------SFRGCTSLSNINFPLS-- 353 (394)
T ss_dssp TCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTT--CCEECTT-------------TTTTCTTCCEECCCTT--
T ss_pred ccccccccccccccceechh----hhcCCCCCCEEEeCCc--ccEEhHH-------------hccCCCCCCEEEECcc--
Confidence 56788888886532 12332 2356889999998643 3322211 1237899999999652
Q ss_pred CCHHHHHHHHHhCCCCCEEEecCCCCCCHHHHHHHHHcCCCCCEE
Q psy9589 92 LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKM 136 (163)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L 136 (163)
+..-+-.++ .+|++|+.+.+.. .++... ....+|++|+.+
T Consensus 354 l~~I~~~aF-~~C~~L~~i~lp~--~~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 354 LRKIGANAF-QGCINLKKVELPK--RLEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp CCEECTTTB-TTCTTCCEEEEEG--GGGGGG--GGBCTTCEEEEE
T ss_pred ccEehHHHh-hCCCCCCEEEECC--CCEEhh--heecCCCCCcEE
Confidence 332222333 4899999999965 233222 123456777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=76.19 E-value=1.1 Score=27.72 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=23.6
Q ss_pred CCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecCCC
Q psy9589 80 NLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 116 (163)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 116 (163)
+|++|+|+++ .++..... .+..+++|+.|+|.+++
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~-~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPG-LLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTT-TGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChh-hhhhccccCEEEecCCC
Confidence 7999999884 44432222 23368889999998865
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=75.23 E-value=0.84 Score=28.36 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=32.7
Q ss_pred CcCCEEEecCCCCCChHHHHHHHhcCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHH
Q psy9589 41 HQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA 101 (163)
Q Consensus 41 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 101 (163)
++|++|+|++| .++..... ++..+++|+.|+|++++..-|-.+..+.
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~-------------~f~~l~~L~~L~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPG-------------LLDALPALRTAHLGANPWRCDCRLVPLR 77 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTT-------------TGGGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred cCCCEEECCCC-cCCccChh-------------hhhhccccCEEEecCCCeeccCccHHHH
Confidence 47999999997 55543211 2346789999999998777666555544
No 165
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=29.63 E-value=87 Score=18.23 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=28.9
Q ss_pred CCEEEecCCCCCC-hHHHHHHHhcCCHHHHHHHHhcCCCCceEe
Q psy9589 43 LHTLEVASCSQFT-DTGFQALARGLLDSAVLSLAENCPNLYYLC 85 (163)
Q Consensus 43 L~~L~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 85 (163)
|++|.+..|+.-. ..|++.+.. ..+..+....|++..+-
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~----~~l~~~k~~NP~v~i~v 58 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIE----KRYVELKKANPDLPILI 58 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHH----HTHHHHHHHSTTCCEEE
T ss_pred eeEEEEEEcCCCCCchhHHHHHH----HhhHHHHHHCCCceEEE
Confidence 8999999986544 578887765 45677777788888663
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.71 E-value=9.5 Score=22.37 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=15.9
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHHhCCCCCEEEecC
Q psy9589 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVAS 114 (163)
Q Consensus 77 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 114 (163)
.|..|+.+.|-. .++..+-.++. +|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~-~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFS-GCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSST-TCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEcHHHHh-ccCCccEEEEcC
Confidence 455555555533 12222222222 566666666644
Done!