RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9589
(163 letters)
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1. Amn1
has been functionally characterized in Saccharomyces
cerevisiae as a component of the Antagonist of MEN
pathway (AMEN). The AMEN network is activated by MEN
(mitotic exit network) via an active Cdc14, and in turn
switches off MEN. Amn1 constitutes one of the
alternative mechanisms by which MEN may be disrupted.
Specifically, Amn1 binds Tem1 (Termination of M-phase, a
GTPase that belongs to the RAS superfamily), and
disrupts its association with Cdc15, the primary
downstream target. Amn1 is a leucine-rich repeat (LRR)
protein, with 12 repeats in the S. cerevisiae ortholog.
As a negative regulator of the signal transduction
pathway MEN, overexpression of AMN1 slows the growth of
wild type cells. The function of the vertebrate members
of this family has not been determined experimentally,
they have fewer LRRs that determine the extent of this
model.
Length = 226
Score = 78.5 bits (194), Expect = 2e-18
Identities = 50/153 (32%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL 72
NC L L L G + D LI LAQ C L L++ +C TD+G ALA
Sbjct: 50 NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALAT-------- 101
Query: 73 SLAENCPNLYYLCLS---GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARN 129
NCP L + L +TD SL L + C L T+ A C TD G LA
Sbjct: 102 ----NCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASG 156
Query: 130 C-RLLAKMDLEECVLITDATLIHL--ALGCPRL 159
C + L ++ L C +TD ++ + + P L
Sbjct: 157 CSKSLERLSLNNCRNLTDQSIPAILASNYFPNL 189
Score = 74.7 bits (184), Expect = 4e-17
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
+++LA++CPNL L L C +TD+ ++ LA C +L T+ + G +
Sbjct: 70 LIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINL---------GRHRNGHLI 120
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRC-HQLHTLEVASCSQFTDTGFQA 125
D ++ +L +NC L + +GC +TD + LA C L L + +C TD A
Sbjct: 121 TDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPA 179
Query: 126 L--ARNCRLLAKMDLEECVLITD 146
+ + L+ ++ C LITD
Sbjct: 180 ILASNYFPNLSVLEFRGCPLITD 202
Score = 63.9 bits (156), Expect = 5e-13
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKM 136
NC L L L G + D LI LAQ C L L++ +C TD+G ALA NC L +
Sbjct: 50 NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTI 109
Query: 137 DL---EECVLITDATLIHLALGCPRLEKL 162
+L LITD +L L C L+ +
Sbjct: 110 NLGRHRNGHLITDVSLSALGKNCTFLQTV 138
Score = 57.7 bits (140), Expect = 9e-11
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 7 VLSLAENCPNLYYLCLS---GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA 63
+++LA NCP L + L +TD SL L + C L T+ A C TD G LA
Sbjct: 96 IVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELA 154
Query: 64 RG---------------LLDSAVLSLAE--NCPNLYYLCLSGCSQLTDASLIVLAQR 103
G L D ++ ++ PNL L GC +TD S I+L +
Sbjct: 155 SGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITDFSRIILFKL 211
>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC
(cysteine-containing) subfamily.
Length = 26
Score = 31.2 bits (72), Expect = 0.019
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 14 CPNLYYLCLSGCSQLTDASLIVLAQR 39
CPNL L LSGC+ +TD L LA+
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 31.2 bits (72), Expect = 0.019
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 78 CPNLYYLCLSGCSQLTDASLIVLAQR 103
CPNL L LSGC+ +TD L LA+
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 28.5 bits (65), Expect = 0.17
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 40 CHQLHTLEVASCSQFTDTGFQALARG 65
C L L+++ C+ TD G QALA+G
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 28.5 bits (65), Expect = 0.18
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 104 CHQLHTLEVASCSQFTDTGFQALARN 129
C L L+++ C+ TD G QALA+
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALAKG 26
Score = 24.3 bits (54), Expect = 5.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 130 CRLLAKMDLEECVLITDATLIHLA 153
C L ++DL C ITD L LA
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALA 24
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 29.5 bits (66), Expect = 1.0
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
I LS+A N L L LS CS L + + Q ++L L+++ C
Sbjct: 650 IPDLSMATN---LETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLE--------- 695
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGCSQL 92
+L N +LY L LSGCS+L
Sbjct: 696 ------ILPTGINLKSLYRLNLSGCSRL 717
Score = 27.5 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 15/55 (27%)
Query: 38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQL 92
Q H+L LE+ +C + L G+ N +L L LSGCS+L
Sbjct: 799 QNLHKLEHLEIENC-----INLETLPTGI----------NLESLESLDLSGCSRL 838
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 27.8 bits (62), Expect = 2.4
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 41 HQLHTL--EVASCSQFTDTGFQALARGLLDSAVLSLAEN-CPNLYYLCLSGCSQL 92
H++ L +VA F D +G LD A S+A+ L C QL
Sbjct: 277 HKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAYECVQL 331
>gnl|CDD|215181 PLN02317, PLN02317, arogenate dehydratase.
Length = 382
Score = 27.8 bits (62), Expect = 2.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 51 CSQFTDTGFQALARGLLDSAVLSLAEN 77
C QF + FQA+ L D AVL + EN
Sbjct: 123 CEQF-EAAFQAVELWLADRAVLPI-EN 147
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 27.7 bits (63), Expect = 3.3
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 46 LEVASCSQFTDTGFQA 61
E++SCS TD FQA
Sbjct: 347 REISSCSNCTD--FQA 360
Score = 27.7 bits (63), Expect = 3.3
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 110 LEVASCSQFTDTGFQA 125
E++SCS TD FQA
Sbjct: 347 REISSCSNCTD--FQA 360
>gnl|CDD|176141 cd08450, PBP2_HcaR, The C-terminal substrate binding domain of
LysR-type transcriptional regulator HcaR in involved in
3-phenylpropionic acid catabolism, contains the type2
periplasmic binding fold. HcaR, a member of the LysR
family of transcriptional regulators, controls the
expression of the hcA1, A2, B, C, and D operon, encoding
for the 3-phenylpropionate dioxygenase complex and
3-phenylpropionate-2',3'-dihydrodiol dehydrogenase, that
oxidizes 3-phenylpropionate to 3-(2,3-dihydroxyphenyl)
propionate. Dioxygenases play an important role in
protecting the cell against the toxic effects of
dioxygen. The expression of hcaR is negatively
auto-regulated, as for other members of the LysR family,
and is strongly repressed in the presence of glucose.
This substrate-binding domain shows significant homology
to the type 2 periplasmic binding proteins (PBP2), which
are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 196
Score = 26.6 bits (59), Expect = 5.5
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 46 LEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCH 105
L+V S F+ +AL RG LD A + + Y L LIV+ H
Sbjct: 29 LDVELSSLFSPQLAEALMRGKLDVAFMRPEIQSDGIDYQLLL------KEPLIVVLPADH 82
Query: 106 QLHTLEVASCSQFTDTGFQALARNCRLLA 134
+L E F + A +L
Sbjct: 83 RLAGREKIPPQDLAGENFISPAPTAPVLQ 111
>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional.
Length = 587
Score = 26.8 bits (60), Expect = 5.6
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 25 CSQLTDASL----IVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPN 80
L +A++ IV +QRC T +++ FT + + ++A L E
Sbjct: 458 FGALAEANISVDMIVQSQRCRSDGTRDIS----FT------VPKEDREAAQKVLRELAKQ 507
Query: 81 LYYLCLSGCSQLTDASLI 98
L +++ D I
Sbjct: 508 L------PGAEVEDGPAI 519
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 26.5 bits (59), Expect = 7.3
Identities = 50/180 (27%), Positives = 65/180 (36%), Gaps = 34/180 (18%)
Query: 9 SLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARG 65
L + P L L L L AS LA + L L +A+ + D G +ALA G
Sbjct: 131 GLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRALAEG 188
Query: 66 LLDSA---VLSLAENC----------------PNLYYLCLSGCSQLTDASLIVLA----Q 102
L + VL L N +L L L + LTDA LA
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS 247
Query: 103 RCHQLHTLEVASCSQFTDTGFQALARNCR---LLAKMDLEE-CVLITDATLIHLALGCPR 158
L TL SC+ TD G + LA L ++DL A L+ +L P
Sbjct: 248 PNISLLTL-SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306
>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the
attachment of serine to the 3' OH group of ribose of the
appropriate tRNA. This domain It is primarily
responsible for ATP-dependent formation of the enzyme
bound aminoacyl-adenylate. Class II assignment is based
upon its structure and the presence of three
characteristic sequence motifs in the core domain. SerRS
synthetase is a homodimer.
Length = 297
Score = 26.4 bits (59), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 47 EVASCSQFTDTGFQA 61
E++SCS TD FQA
Sbjct: 229 EISSCSNCTD--FQA 241
Score = 26.4 bits (59), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 111 EVASCSQFTDTGFQA 125
E++SCS TD FQA
Sbjct: 229 EISSCSNCTD--FQA 241
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.137 0.418
Gapped
Lambda K H
0.267 0.0891 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,711,882
Number of extensions: 659758
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 29
Length of query: 163
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 74
Effective length of database: 6,990,096
Effective search space: 517267104
Effective search space used: 517267104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.7 bits)