RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9589
(163 letters)
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 105 bits (264), Expect = 3e-28
Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 20/164 (12%)
Query: 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA--------- 63
NL L LSGCS ++ +L L C +L L ++ C FT+ Q
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199
Query: 64 -------RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 116
+ L S + +L CPNL +L LS L + + + L L ++ C
Sbjct: 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCY 258
Query: 117 QFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLE 160
L L L+ ++ D TL L P L+
Sbjct: 259 DIIPETLLELGEIPTL---KTLQVFGIVPDGTLQLLKEALPHLQ 299
Score = 96.9 bits (241), Expect = 6e-25
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 17/159 (10%)
Query: 6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
T+ + C L L L G L+D + LA + L L ++ CS F++ Q
Sbjct: 109 TLHGILSQCSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQT---- 162
Query: 66 LLDSAVLSLAENCPNLYYLCLSGCSQLTDASL-IVLAQRCHQLHTLEVASCSQF-TDTGF 123
L +C L L LS C T+ + + +A + L ++ + +
Sbjct: 163 --------LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214
Query: 124 QALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
L R C L +DL + V++ + L+ L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHL 252
Score = 92.6 bits (230), Expect = 3e-23
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLL 67
L+ + + ++ LS + ++L + +C +L L + +D LA+
Sbjct: 86 LAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK--- 140
Query: 68 DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQ-AL 126
NL L LSGCS ++ +L L C +L L ++ C FT+ Q A+
Sbjct: 141 ----------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190
Query: 127 ARNCRLLAKMDLEECV-LITDATLIHLALGCPRLEKL 162
A + +++L + + L L CP L L
Sbjct: 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227
Score = 69.9 bits (171), Expect = 5e-15
Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 35/143 (24%)
Query: 10 LAENCPNLYYLCLSGCSQ-LTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLD 68
+A + L LSG + L + L L +RC L L+++ + FQ +
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ---- 245
Query: 69 SAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVA--------------- 113
L +L LS C + +L+ L + L TL+V
Sbjct: 246 ---------LNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEAL 295
Query: 114 -----SCSQFTDTGFQALARNCR 131
+CS FT +
Sbjct: 296 PHLQINCSHFTTIARPTIGNKKN 318
Score = 68.4 bits (167), Expect = 2e-14
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 3/146 (2%)
Query: 18 YYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAEN 77
L +L +I + S F + S + +
Sbjct: 57 KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116
Query: 78 CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMD 137
C L L L G L+D + LA + L L ++ CS F++ Q L +C L +++
Sbjct: 117 CSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174
Query: 138 LEECVLITDATLIH-LALGCPRLEKL 162
L C T+ + +A + +L
Sbjct: 175 LSWCFDFTEKHVQVAVAHVSETITQL 200
Score = 64.5 bits (157), Expect = 5e-13
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 16/112 (14%)
Query: 6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
+ +L CPNL +L LS L + + + L L ++ C L
Sbjct: 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEI 271
Query: 66 -----------LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQ 106
+ D + L E P+L CS T + + + +Q
Sbjct: 272 PTLKTLQVFGIVPDGTLQLLKEALPHLQI----NCSHFTTIARPTIGNKKNQ 319
Score = 27.2 bits (60), Expect = 2.4
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 71 VLSLAENCPNLYYLCLSG----CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
+L ++ C Y L LT +L + C + A
Sbjct: 29 LLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE 88
Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
+ + MDL V I +TL + C +L+ L
Sbjct: 89 HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 100 bits (249), Expect = 2e-25
Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 35/188 (18%)
Query: 7 VLSLAENCPNLYYLCLSGCSQ----------LTDASLIVLAQRCHQLHTLEVASCSQFTD 56
+ LA+ C L L + + ++ LI LAQ C +L + V S T+
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392
Query: 57 TGFQALARGL---------------------LDSAVLSLAENCPNLYYLCLS-GCSQLTD 94
+++ L LD+ V SL C L LTD
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452
Query: 95 ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLAL 154
L + Q + + + + +D G +R C L K+++ C ++ +
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVT 510
Query: 155 GCPRLEKL 162
P L L
Sbjct: 511 KLPSLRYL 518
Score = 95.4 bits (237), Expect = 9e-24
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 13/163 (7%)
Query: 8 LSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLL 67
+L + CPNL L + D L VLAQ C QL L + + + +
Sbjct: 311 CTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG--LVS 366
Query: 68 DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-------QFTD 120
+++LA+ C L Y+ + S +T+ SL + L + D
Sbjct: 367 QRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425
Query: 121 TGFQALARNCRLLAKMDLEE-CVLITDATLIHLALGCPRLEKL 162
G ++L C+ L + +TD L ++ P + +
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468
Score = 88.5 bits (219), Expect = 2e-21
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 14/167 (8%)
Query: 7 VLSLAENCPNLYYLCLS--GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
+ LA++ +L L ++++ L +A+ C L +++V GF A
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243
Query: 65 GLLDSAVLSLAE---------NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115
L + SL E N LC G S + + +L Q+ L++
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303
Query: 116 SQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
T+ L + C L ++ I D L LA C +L++L
Sbjct: 304 LLETEDHCT-LIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL 347
Score = 87.7 bits (217), Expect = 5e-21
Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 16/155 (10%)
Query: 7 VLSLAENCPNLYYLCLS-GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
V SL C L LTD L + Q + + + G
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-------------G 474
Query: 66 LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS-QFTDTGFQ 124
D ++ + CPNL L + GC ++ ++ + L L V T
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533
Query: 125 ALARNCRLLAKMDLEECVLITDATLIHLALGCPRL 159
+AR + + + I +
Sbjct: 534 QMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568
Score = 82.7 bits (204), Expect = 3e-19
Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 18/161 (11%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ-RCHQLHTLEVASCSQFTDTGFQALARG 65
V ++ N L + ++D L LA+ R L TL++ CS FT G ++
Sbjct: 104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT- 161
Query: 66 LLDSAVLSLAENCPNLYYLCLSGCS--QLTDASLIVLAQRCHQLHTLEVA--SCSQFTDT 121
+C + L + S + L LAQ L L ++ +
Sbjct: 162 -----------HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK 210
Query: 122 GFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
+ +ARNCR L + + + ++ A
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251
Score = 79.2 bits (195), Expect = 4e-18
Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 33/173 (19%)
Query: 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL 72
+L L L CS T L+ + C ++ TL + S +
Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD----------GKWLH 185
Query: 73 SLAENCPNLYYLCLS--GCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNC 130
LA++ +L L ++++ L +A+ C L +++V GF A N
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245
Query: 131 RLLA---------------------KMDLEECVLITDATLIHLALGCPRLEKL 162
K+ + + L ++ KL
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298
Score = 76.1 bits (187), Expect = 6e-17
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 20 LCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL-ARGLLDSAVLSLAENC 78
+ ++ C T L ++R L +L++ + G + V ++ N
Sbjct: 55 VTMALCYTATPDRL---SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL 111
Query: 79 PNLYYLCLSGCSQLTDASLIVLAQ-RCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMD 137
L + ++D L LA+ R L TL++ CS FT G ++ +CR + +
Sbjct: 112 RQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170
Query: 138 LEECVLIT--DATLIHLALGCPRLEKL 162
+EE L LA LE L
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVL 197
Score = 61.5 bits (149), Expect = 7e-12
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
+ + + PN+ ++ L +D L+ ++ C L LE+ C F++ A L
Sbjct: 455 LSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKL 512
Query: 67 L---------------DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHT 109
++ +A N+ + ++ I + +
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA 570
Score = 41.1 bits (96), Expect = 7e-05
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 6 TVLSLAENCPNLYYLCLSGCS-QLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
+ + P+L YL + G +T L+ +A+ + + + G
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREME 563
Query: 65 GL 66
Sbjct: 564 HP 565
Score = 30.7 bits (69), Expect = 0.19
Identities = 3/41 (7%), Positives = 12/41 (29%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHT 45
++ +A N+ + ++ I + +
Sbjct: 530 QDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA 570
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 99 bits (249), Expect = 2e-25
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 8/156 (5%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
++S++ CP L + L C Q+T+A+LI +A+ + + L
Sbjct: 364 LVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY---LTLEP 419
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
LD ++ E+C +L L LSG LTD + ++ L VA +D G +
Sbjct: 420 LDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHV 476
Query: 127 ARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
C L K+++ +C A L+ A + L
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKA-LLANASKLETMRSL 511
Score = 98.0 bits (244), Expect = 1e-24
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
++ L CP L L + + DA L VLA C L L V F L
Sbjct: 306 LVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN----VAL 359
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS---------Q 117
+ ++S++ CP L + L C Q+T+A+LI +A+ + + +
Sbjct: 360 TEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418
Query: 118 FTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
D GF A+ +C+ L ++ L +TD ++ ++E L
Sbjct: 419 PLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEML 461
Score = 89.6 bits (222), Expect = 1e-21
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Query: 3 IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 62
++ + +++ + L + L +TD L ++A+ L ++SC F+ G A+
Sbjct: 93 VYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151
Query: 63 ARGLLDSAVLSLAENCPNLYYLCLSGC--SQLTDASLIVLAQRCHQLHTLEVASC-SQFT 119
A C NL L L ++ L L +L ++ S+ +
Sbjct: 152 AA------------TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199
Query: 120 DTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
+ + L C L + L V + L L P+LE+L
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEEL 240
Score = 88.4 bits (219), Expect = 3e-21
Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 29/181 (16%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
+ L CPNL L L+ L L L QR QL L + +
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260
Query: 67 L----------------DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
L + + ++ C L L LS + L+ L +C +L L
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRL 319
Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDL--------EECVLITDATLIHLALGCPRLEKL 162
V D G + LA C+ L ++ + E V +T+ L+ +++GCP+LE +
Sbjct: 320 WV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377
Query: 163 I 163
+
Sbjct: 378 L 378
Score = 83.8 bits (207), Expect = 1e-19
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 25 CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA-RGLLDSAVLSLAENCPNLYY 83
S + +R ++ ++E+ F D G + + +++ + L
Sbjct: 50 IGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109
Query: 84 LCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVL 143
+ L +TD L ++A+ L ++SC F+ G A+A CR L ++DL E +
Sbjct: 110 IRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV 168
Query: 144 --ITDATLIHLALGCPRLEKL 162
++ L H L L
Sbjct: 169 DDVSGHWLSHFPDTYTSLVSL 189
Score = 83.8 bits (207), Expect = 1e-19
Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 22/173 (12%)
Query: 7 VLSLAENCPNLYYLCLSGC-SQLTDASLIVLAQRCHQLHTLEVASCSQFTD--------- 56
+ + +L L +S S+++ ++L L RC L +L++
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235
Query: 57 -------TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHT 109
G+ A R + S + C L CLSG A L + C +L T
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKEL--RCLSGFWDAVPAYLPAVYSVCSRLTT 293
Query: 110 LEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
L ++ L C L ++ + I DA L LA C L +L
Sbjct: 294 LNLSYA-TVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLREL 343
Score = 83.4 bits (206), Expect = 1e-19
Identities = 38/178 (21%), Positives = 53/178 (29%), Gaps = 25/178 (14%)
Query: 6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC--SQFTDTGFQALA 63
+ +A++ N L LS C + L +A C L L++ +
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180
Query: 64 RGLL---------------DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLH 108
SA+ L CPNL L L+ L L L QR QL
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLE 238
Query: 109 TLEVASCSQFTD----TGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
L + +G C+ L L A L + C RL L
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKEL--RCLSGFWDAVPAYLPAVYSVCSRLTTL 294
Score = 73.4 bits (180), Expect = 5e-16
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGL 66
++ E+C +L L LSG LTD + ++ L VA G
Sbjct: 424 FGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFA-------------GD 468
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
D + + C +L L + C D +L+ A + + +L ++SCS + + L
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS-VSFGACKLL 526
Query: 127 ARNCRLL 133
+ L
Sbjct: 527 GQKMPKL 533
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 65.6 bits (160), Expect = 3e-14
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 1 MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCH---QLHTLEVASCSQFTDT 57
I E + + L C + D L L+Q + + +E+ SC TD
Sbjct: 71 SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130
Query: 58 GFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA 101
G AL NL YL LS + + IV A
Sbjct: 131 GIIALHH-------------FRNLKYLFLSDLPGVKEKEKIVQA 161
Score = 65.2 bits (159), Expect = 4e-14
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCH---QLHTLEVASCSQFTDTGF 123
+ S E + + L C + D L L+Q + + +E+ SC TD G
Sbjct: 73 IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
Query: 124 QALARNCRLLAKMDLEECVLITDATLIHLAL--GCPRLE 160
AL R L + L + + + I A P LE
Sbjct: 133 IALHH-FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170
Score = 32.5 bits (74), Expect = 0.028
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 94 DASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLA 153
L +++ ++ A+ S GF + + K+ L +C I D L L+
Sbjct: 50 YNHLPTGPLDKYKIQAID-ATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLS 107
Query: 154 LGCPRLEKL 162
+ +
Sbjct: 108 QLENLQKSM 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 4e-11
Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 45/192 (23%)
Query: 1 MDIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS--QFTD-- 56
++I + L N P+ YL S LI + Q H + T ++ + +
Sbjct: 213 LNI-LEWLENPSNTPDKDYLLSIPIS----CPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 57 TGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLH---TL 110
G ++GL+ + ++ ++ + + ++ VL RC++ + +L
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFF--------VSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 111 EVASCSQFTDTGFQA----LARNCRLLAKMDLEECVLITDATL-----IHLAL------- 154
+ + L+ L + +++ V T++ L + ++L
Sbjct: 320 PPSILEDSLENNEGVPSPMLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 155 ---GCPR-LEKL 162
G P+ L L
Sbjct: 378 VVSGPPQSLYGL 389
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 49.2 bits (116), Expect = 1e-07
Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 15/149 (10%)
Query: 15 PNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--ASCSQFTDTGFQALARGLLDSAVL 72
PNL L + +L L L + D
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS----- 247
Query: 73 SLAENCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCR 131
+ PNL +L + + + + + QL T+++ S TD G + L +
Sbjct: 248 --KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLLDHVD 304
Query: 132 LLAKM---DLEECVLITDATLIHLALGCP 157
+ + +++ ++D L P
Sbjct: 305 KIKHLKFINMKYN-YLSDEMKKELQKSLP 332
Score = 42.6 bits (99), Expect = 2e-05
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTLEVASCSQFTDTGFQALA 63
L + PNL +L + + + + + QL T+++ S TD G + L
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLL 300
Query: 64 RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRC 104
+ + +L ++ + L+D L +
Sbjct: 301 DHV---------DKIKHLKFINMKYN-YLSDEMKKELQKSL 331
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 45.3 bits (108), Expect = 2e-06
Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 26/169 (15%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALA 63
L + L C LT+A ++ + L L + ++ D G +
Sbjct: 20 WAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNL-RSNELGDVGVHCVL 77
Query: 64 RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTD 120
+G L + L L C LT A VL+ + L L + S + D
Sbjct: 78 QG--------LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHL-SDNLLGD 127
Query: 121 TGFQALA----RNCRLLAKMDLEECVLITDATLIHLAL---GCPRLEKL 162
G Q L L K+ LE C ++ A+ LA P ++L
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKEL 175
Score = 45.0 bits (107), Expect = 2e-06
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 23/155 (14%)
Query: 9 SLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARG 65
+L E L L + C T A + + L L++ S ++ D G + L +G
Sbjct: 307 TLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQI-SNNRLEDAGVRELCQG 364
Query: 66 LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTG 122
L + L L L+ C ++D+S LA H L L++ S + D G
Sbjct: 365 --------LGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDL-SNNCLGDAG 414
Query: 123 FQALA----RNCRLLAKMDLEECVLITDATLIHLA 153
L + LL ++ L + ++ L
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQ 448
Score = 45.0 bits (107), Expect = 3e-06
Identities = 43/167 (25%), Positives = 57/167 (34%), Gaps = 28/167 (16%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARGL 66
L + L L C LT A VL+ + L L + S + D G Q L GL
Sbjct: 80 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHL-SDNLLGDAGLQLLCEGL 137
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTGF 123
LD L L L C L+ AS LA L V S + + G
Sbjct: 138 LD--------PQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTV-SNNDINEAGV 187
Query: 124 QALAR-----NCRLLAKMDLEECVLITDATLIHLALG---CPRLEKL 162
+ L + C+L + LE C +T L L +L
Sbjct: 188 RVLCQGLKDSPCQLE-ALKLESC-GVTSDNCRDLCGIVASKASLREL 232
Score = 42.6 bits (101), Expect = 2e-05
Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 26/167 (15%)
Query: 9 SLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTDTGFQALARG 65
L ++ L L L C +T + L L L + ++ D G L G
Sbjct: 193 GLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELAL-GSNKLGDVGMAELCPG 250
Query: 66 LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ---RCHQLHTLEVASCSQFTDTG 122
LL L L + C +T L + L L + + ++ D G
Sbjct: 251 LLHP--------SSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSL-AGNELGDEG 300
Query: 123 FQALAR----NCRLLAKMDLEECVLITDATLIHLALG---CPRLEKL 162
+ L L + ++ C T A H + L +L
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLEL 346
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-05
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 57 TGFQALA-RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASC 115
+G +A L V + +++L L C+ + L +L + +Q+ +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRS 217
Query: 116 SQFTDTGF---QALARNCRLLAKMDLEECVLITD-----ATLIHLALGCPRL 159
++ A RLL E C+L+ L C L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 41.9 bits (99), Expect = 2e-05
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 22/155 (14%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--ASCSQFTDTGFQALARGLL 67
+ N P+L + L+ + +L A+ ++ ++ D ALA
Sbjct: 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-- 88
Query: 68 DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV----ASCSQFTDTGF 123
L N L L + ++ + ++ L + +L +
Sbjct: 89 ------LKVNN-TLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140
Query: 124 QALAR----NCRLLAKMDLEECVLITDATLIHLAL 154
+A N LL K A+
Sbjct: 141 MEIANMLEKNTTLL-KFGYHFT-QQGPRLRASNAM 173
Score = 29.6 bits (67), Expect = 0.29
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--ASCSQFTDTGFQ 124
++ + + N P+L + L+ + +L A+ ++ ++ D
Sbjct: 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF 83
Query: 125 ALA---RNCRLLAKMDLEECVLITDATLIHLA 153
ALA + L +++E I+ + ++ L
Sbjct: 84 ALAEMLKVNNTLKSLNVESN-FISGSGILALV 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 40.1 bits (94), Expect = 1e-04
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 26/140 (18%)
Query: 12 ENCPNLYYLCLSGCSQLTDASLIVLA----QRCHQLHTLEVASCSQFTDTGFQALARGLL 67
++ L+ + + + + L C +L L++ FT G ALA L
Sbjct: 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIAL- 240
Query: 68 DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ-----RCHQLHTLEVASCSQFTDTG 122
++ PNL L L+ C L+ + L TL + +
Sbjct: 241 --------KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDA 290
Query: 123 FQALAR----NCRLLAKMDL 138
+ L L ++L
Sbjct: 291 VRTLKTVIDEKMPDLLFLEL 310
Score = 39.7 bits (93), Expect = 2e-04
Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 39/177 (22%)
Query: 12 ENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCS-----QFTDTGFQALA 63
++ + LSG + + L+ L E + + L
Sbjct: 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87
Query: 64 RGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQLHTLEVASCSQFTD 120
+ LL CP L+ + LS + L + L L + +
Sbjct: 88 QALL---------KCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGP 136
Query: 121 TGFQALAR------------NCRLLAKMDLEECVLITDATLIHLALG---CPRLEKL 162
+AR N L + + + ++ A L +
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTV 192
Score = 33.1 bits (76), Expect = 0.028
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 12 ENCPNLYYLCLSGCSQLTDASLIVLAQ-----RCHQLHTLEVASCSQFTDTGFQALARGL 66
++ PNL L L+ C L+ + L TL + + + L
Sbjct: 241 KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKT-- 296
Query: 67 LDSAVLSLAENCPNLYYLCLSG 88
+ E P+L +L L+G
Sbjct: 297 ------VIDEKMPDLLFLELNG 312
Score = 30.8 bits (70), Expect = 0.16
Identities = 16/127 (12%), Positives = 29/127 (22%), Gaps = 25/127 (19%)
Query: 50 SCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLA---QRCHQ 106
T +++ L ++ + LSG + + L+
Sbjct: 12 KLDAITTEDEKSVFAVL---------LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKD 61
Query: 107 LHTLEVASCS-----QFTDTGFQALA---RNCRLLAKMDLEECVLITDATLIHLA---LG 155
L E + + L C L + L + L
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSK 120
Query: 156 CPRLEKL 162
LE L
Sbjct: 121 HTPLEHL 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 38.5 bits (90), Expect = 4e-04
Identities = 28/190 (14%), Positives = 55/190 (28%), Gaps = 43/190 (22%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQ----RCHQLHTLEVASCSQFTDTGFQALARG 65
LA N+ L LSG L+ S L + + L++ F+ +
Sbjct: 75 LAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQA 132
Query: 66 LL-----------------DSAVLSLAE-----NCPNLYYLCLSGCSQLTDASLIVLA-- 101
+ L + N+ L L G L + LA
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA-NVNSLNLRGN-NLASKNCAELAKF 190
Query: 102 --QRCHQLHTLEVASCSQFTDTGFQALAR----NCRLLAKMDLEECVLITDATLIHLALG 155
+ +L++++ + LA + ++L + +L +L L
Sbjct: 191 LASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLL 248
Query: 156 ---CPRLEKL 162
L+ +
Sbjct: 249 KDSLKHLQTV 258
Score = 36.6 bits (85), Expect = 0.002
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 25/167 (14%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQ----RCHQLHTLEVASCSQFTDTGFQALARG 65
+ ++ L L G L S L Q +++L + LA+
Sbjct: 133 FSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKF 190
Query: 66 LLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ----RCHQLHTLEVASCSQFTDT 121
LA ++ L LS L S LA + + +L +
Sbjct: 191 --------LASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP 240
Query: 122 GFQALA---RNCRLLAKMDLEECVL--ITDATLIHLALGCPRLEKLI 163
+ L + + L + L+ ++ ++ L P ++K+I
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Score = 30.4 bits (69), Expect = 0.21
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 20/126 (15%)
Query: 36 LAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDA 95
H + +L+++ L + A ++ L LSG L
Sbjct: 17 FTSIPHGVTSLDLSLN-NLYSISTVELIQA--------FANTPASVTSLNLSGN-SLGFK 66
Query: 96 SLIVLAQ----RCHQLHTLEVASCSQFTDTGFQALA----RNCRLLAKMDLEECVLITDA 147
+ L Q + +L ++ + L + +DL +
Sbjct: 67 NSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124
Query: 148 TLIHLA 153
+
Sbjct: 125 SSSEFK 130
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 37.0 bits (86), Expect = 0.002
Identities = 43/183 (23%), Positives = 62/183 (33%), Gaps = 35/183 (19%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQ----RCHQLHTLEVASCSQFTDTGFQALARG 65
AE +L L L+G ++T V+A H L + +ASC Q G + L
Sbjct: 67 SAEVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPV 124
Query: 66 LLDSAVLSLAEN-----------------CPNLYYLCLSGCSQLTDASLIVLA---QRCH 105
L + L L N + L LS LT A + VL
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNT 183
Query: 106 QLHTLEVASCSQFTDTGFQALA---RNCRLLAKMDLEECVLITDATLIHLALG---CPRL 159
+ L + D G + LA R L ++++ D + LA P L
Sbjct: 184 SVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSL 241
Query: 160 EKL 162
E L
Sbjct: 242 ELL 244
Score = 31.6 bits (72), Expect = 0.090
Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 9/125 (7%)
Query: 12 ENCPNLYYLCLSGCSQLTDASLIVLAQ-----RCHQLHTLEVASCSQFTDTGFQALARGL 66
P+L L L +L+ VL + + + ++ L+
Sbjct: 236 REHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294
Query: 67 LDSAVLSLAENCPNLYYLCLS-GCSQLTDASLIVLAQRCHQLHTLEV--ASCSQFTDTGF 123
+ A +L L S+ + AQ +
Sbjct: 295 RNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSG 354
Query: 124 QALAR 128
Sbjct: 355 SWSHP 359
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 35.3 bits (82), Expect = 0.004
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 20/116 (17%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
T + NL L + G +T + L+ L L+++ D+ +
Sbjct: 78 ATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSG-LTSLTLLDISHS-AHDDSILTKIN- 133
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD 120
P + + LS +TD + + +L +L + D
Sbjct: 134 ------------TLPKVNSIDLSYNGAITDIMPL---KTLPELKSLNIQFD-GVHD 173
Score = 33.8 bits (78), Expect = 0.013
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
+T L+ E N+ L ++ T+ + I L L + T L
Sbjct: 56 VTDLTGIEYAHNIKDLTINNI-HATNYNPI---SGLSNLERLRIMGK-DVTSDKIPNL-- 108
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTD 120
+L L +S D+ L + ++++++++ TD
Sbjct: 109 -----------SGLTSLTLLDISHS-AHDDSILTKINT-LPKVNSIDLSYNGAITD 151
Score = 26.5 bits (59), Expect = 3.8
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 19/86 (22%)
Query: 3 IFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 62
++L+ P + + LS +TD + + +L +L + D
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPL---KTLPELKSLNIQFD-GVHD------ 173
Query: 63 ARGLLDSAVLSLAENCPNLYYLCLSG 88
E+ P L L
Sbjct: 174 ---------YRGIEDFPKLNQLYAFS 190
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 32.5 bits (74), Expect = 0.035
Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 22/140 (15%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS--QFTDTGFQALARGLL 67
L E+ +L + ++ +++ + L + +E S + +D+ + L
Sbjct: 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL-- 93
Query: 68 DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGF---- 123
+ + +L L + LT L L + ++ +
Sbjct: 94 ------IETSP-SLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145
Query: 124 -----QALARNCRLLAKMDL 138
A+ N LL ++ +
Sbjct: 146 EMDMMMAIEENESLL-RVGI 164
Score = 27.9 bits (62), Expect = 1.4
Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS--QFTDTGFQ 124
++S + L E+ +L + ++ +++ + L + +E S + +D+ +
Sbjct: 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR 88
Query: 125 ALAR----NCRLLAKMDLEECVLITDATLIHLA 153
L + L +++E +T L L
Sbjct: 89 GLIELIETSPS-LRVLNVESN-FLTPELLARLL 119
Score = 27.1 bits (60), Expect = 2.2
Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 17 LYYLCLSGCSQLTDASLIVLAQ--RCHQ-LHTLEVASCSQFTDTGFQALARGLLDSAVLS 73
+ L+ ++D+ L + L L V S T L R L + +
Sbjct: 72 IEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSI- 128
Query: 74 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGF-----QALAR 128
+ S L + + + + +L F +AL R
Sbjct: 129 ------VEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI-SFASMEARHRVSEALER 181
Query: 129 NCRLLAKMDLEE 140
N + L +
Sbjct: 182 NYERVRLRRLGK 193
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 29.3 bits (65), Expect = 0.52
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 24/106 (22%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
I LS ++ L L L ++D + + QL +L + + + TD
Sbjct: 99 IKDLSSLKDLKKLKSLSLEHN-GISDINGL---VHLPQLESLYLGNN-KITD-------- 145
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
+++ L L L Q++D + +L L
Sbjct: 146 -------ITVLSRLTKLDTLSLEDN-QISDIVPL---AGLTKLQNL 180
Score = 29.3 bits (65), Expect = 0.53
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 28/123 (22%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS--QFTD-TGFQA 61
I + + PN+ L L+G +LTD + L L + D + +
Sbjct: 55 IKSVQGIQYLPNVTKLFLNGN-KLTDIKPL------TNLKNLGWLFLDENKIKDLSSLKD 107
Query: 62 LARGLLDSAVLSLAEN----------CPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLE 111
L + L LSL N P L L L ++TD +++ R +L TL
Sbjct: 108 LKK--LK--SLSLEHNGISDINGLVHLPQLESLYLGNN-KITDITVL---SRLTKLDTLS 159
Query: 112 VAS 114
+
Sbjct: 160 LED 162
Score = 27.0 bits (59), Expect = 3.1
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 27/113 (23%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
I + + L +TD + + + + + + S Q +
Sbjct: 11 IKQIFPDDAFAETIKDNLKK-KSVTD--AVTQNE-LNSIDQIIA-NNSDIKS--VQGI-- 61
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQ 117
+ PN+ L L+G +LTD + L L +
Sbjct: 62 -----------QYLPNVTKLFLNGN-KLTDIKPL------TNLKNLGWLFLDE 96
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 28.8 bits (64), Expect = 0.73
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 23 SGCSQLTDASLIVLAQRCH-QLHTLEVASCSQFTDTG----FQALARGLLDSAVLSLA-E 76
+ + +++++R L++ D L R +A L + E
Sbjct: 108 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE 167
Query: 77 NCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTL 110
N P L L LS +L + + Q+ L L
Sbjct: 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKIL 201
Score = 26.5 bits (58), Expect = 4.3
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 3 IFITVLSLA-ENCPNLYYLCLSGCSQLTD-ASLIVLAQRCHQLHTL 46
L + EN P L L LS +L + + Q+ L L
Sbjct: 157 CMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKIL 201
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 1.0
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 111 EVASCSQFTDTGFQALARNCRLLAKMD 137
E+ SCS TD +Q+ R K
Sbjct: 366 ELVSCSNCTD--YQSRNLEIRCGIKQQ 390
Score = 26.8 bits (60), Expect = 3.3
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 47 EVASCSQFTDTGFQA 61
E+ SCS TD +Q+
Sbjct: 366 ELVSCSNCTD--YQS 378
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL 72
+C L +L +S L + + + L L++++ +
Sbjct: 124 SCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVG----------W 171
Query: 73 SLAENCPNLYYLCLSGCS 90
L++ C L +L +SG
Sbjct: 172 VLSDGCGELKHLAISGNK 189
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.1 bits (63), Expect = 1.4
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 111 EVASCSQFTDTGFQALARNCR 131
E+ SCS TD +QA R
Sbjct: 391 ELVSCSNCTD--YQARRLRIR 409
Score = 27.0 bits (60), Expect = 3.5
Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 47 EVASCSQFTDTGFQA 61
E+ SCS TD +QA
Sbjct: 391 ELVSCSNCTD--YQA 403
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 27.7 bits (62), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 111 EVASCSQFTDTGFQALARNCR 131
E+ SCS TD +Q+ + NCR
Sbjct: 389 ELVSCSNCTD--YQSQSVNCR 407
Score = 26.9 bits (60), Expect = 3.5
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 47 EVASCSQFTDTGFQA 61
E+ SCS TD +Q+
Sbjct: 389 ELVSCSNCTD--YQS 401
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 26.9 bits (60), Expect = 2.2
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
+ L + L +L LT + + + ++L LE L+
Sbjct: 32 GKLEGLTDEFEELEFLSTINV-GLTSIANL---PKLNKLKKLE--------------LSD 73
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
+ + LAE CPNL +L LSG ++ D S I ++ L +L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSL 118
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 27.2 bits (61), Expect = 2.4
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 46 LEVASCSQFTDTGFQA 61
EV S S TD +QA
Sbjct: 369 REVVSASNCTD--WQA 382
Score = 27.2 bits (61), Expect = 2.4
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 110 LEVASCSQFTDTGFQA 125
EV S S TD +QA
Sbjct: 369 REVVSASNCTD--WQA 382
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 47 EVASCSQFTDTGFQA 61
EV S S TD FQ+
Sbjct: 401 EVTSASNCTD--FQS 413
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 111 EVASCSQFTDTGFQA 125
EV S S TD FQ+
Sbjct: 401 EVTSASNCTD--FQS 413
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 26.9 bits (59), Expect = 3.0
Identities = 1/23 (4%), Positives = 4/23 (17%), Gaps = 2/23 (8%)
Query: 109 TLEVASCSQFTDTGFQALARNCR 131
S + + +
Sbjct: 268 PTACMSFNYHRE--HFGTTWGIQ 288
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 26.8 bits (60), Expect = 3.5
Identities = 27/158 (17%), Positives = 42/158 (26%), Gaps = 39/158 (24%)
Query: 13 NCPNLYYLCLSGCSQLT-------DASLIVLAQRCHQLHTLEVASCSQFTD--TGFQALA 63
+ L L + C +LT Q L +L + +
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASI---- 202
Query: 64 RGLLDS-AVLSLAEN-----------CPNLYYLCLSGCSQLTD--ASLIVLAQRCHQLHT 109
L + L + + P L L L GC+ L + L
Sbjct: 203 -ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF----GGRAPLKR 257
Query: 110 LEVASCSQFTD--TGFQALARNCRLLAKMDLEECVLIT 145
L + CS L K+DL CV ++
Sbjct: 258 LILKDCSNLLTLPLDI----HRLTQLEKLDLRGCVNLS 291
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 26.7 bits (60), Expect = 3.7
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 46 LEVASCSQFTDTGFQA 61
E SCS D +QA
Sbjct: 344 RETHSCSALLD--WQA 357
Score = 26.7 bits (60), Expect = 3.7
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 110 LEVASCSQFTDTGFQA 125
E SCS D +QA
Sbjct: 344 RETHSCSALLD--WQA 357
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 26.6 bits (59), Expect = 4.7
Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 2/15 (13%)
Query: 47 EVASCSQFTDTGFQA 61
E SCS D +QA
Sbjct: 454 ETHSCSALLD--WQA 466
Score = 26.6 bits (59), Expect = 4.7
Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 2/15 (13%)
Query: 111 EVASCSQFTDTGFQA 125
E SCS D +QA
Sbjct: 454 ETHSCSALLD--WQA 466
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.4 bits (58), Expect = 4.9
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 99 VLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLI--TDATLIHLALGC 156
V+ QRC +L D F +L ++ + +++ D + +
Sbjct: 37 VICQRCFRLKHYNEVQDVPLDDDDFL------SMLHRIGESKALVVNIVDIFDFNGSF-I 89
Query: 157 PRLEKLI 163
P L +
Sbjct: 90 PGLPRFA 96
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 26.5 bits (58), Expect = 5.0
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 99 VLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPR 158
V+ QRC +L TD F + + L V I D + + P
Sbjct: 35 VICQRCFRLKHYNEIQDVSLTDDDFLRILN--GIGKSDAL--VVKIVDIFDFNGSW-LPG 89
Query: 159 LEKLI 163
L + +
Sbjct: 90 LHRFV 94
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 26.3 bits (59), Expect = 5.1
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 46 LEVASCSQFTDTGFQA 61
E++SCS D FQA
Sbjct: 348 REISSCSNCED--FQA 361
Score = 26.3 bits (59), Expect = 5.1
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 110 LEVASCSQFTDTGFQA 125
E++SCS D FQA
Sbjct: 348 REISSCSNCED--FQA 361
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 26.2 bits (58), Expect = 6.2
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 21/90 (23%)
Query: 5 ITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALAR 64
+T + + L G +T + Q + L LE+ Q TD
Sbjct: 31 VTDTVTQADLDGITTLSAFGT-GVTTIEGV---QYLNNLIGLELKDN-QITD-------- 77
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGCSQLTD 94
L+ +N + L LSG L +
Sbjct: 78 -------LAPLKNLTKITELELSGN-PLKN 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.137 0.418
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,352,026
Number of extensions: 127160
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 153
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.0 bits)