RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9589
(163 letters)
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 166
Score = 32.3 bits (72), Expect = 0.014
Identities = 9/64 (14%), Positives = 21/64 (32%)
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
++ + + N P+L + L+ + +L A+ ++ S A
Sbjct: 5 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF 64
Query: 127 ARNC 130
A
Sbjct: 65 ALAE 68
Score = 29.2 bits (64), Expect = 0.16
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 2 DIFITVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCS 52
D+ T+ + N P+L + L+ + +L A+ ++ S
Sbjct: 4 DVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV 54
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 32.6 bits (72), Expect = 0.016
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 11/85 (12%)
Query: 7 VLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEV--ASCSQFTDTGFQALAR 64
L + L C LT+A ++ L ++ D G + +
Sbjct: 19 WAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 77
Query: 65 GLLDSAVLSLAENCPNLYYLCLSGC 89
G L + L L C
Sbjct: 78 G--------LQTPSCKIQKLSLQNC 94
Score = 29.9 bits (65), Expect = 0.12
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 43 LHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQ 102
+ +L++ C + +D + L L + L C LT+A ++
Sbjct: 4 IQSLDI-QCEELSDARWAELLPLL------------QQCQVVRLDDC-GLTEARCKDISS 49
Query: 103 RCHQLHTLEV--ASCSQFTDTGFQALAR 128
L ++ D G + +
Sbjct: 50 ALRVNPALAELNLRSNELGDVGVHCVLQ 77
Score = 28.8 bits (62), Expect = 0.31
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 38 QRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYLCLSGCSQLTDASL 97
Q L L +A C +D+ +LA L +L L LS L DA +
Sbjct: 366 QPGSVLRVLWLADC-DVSDSSCSSLAATL---------LANHSLRELDLSNN-CLGDAGI 414
Query: 98 IVLAQRCHQLHTL 110
+ L + Q L
Sbjct: 415 LQLVESVRQPGCL 427
Score = 28.0 bits (60), Expect = 0.65
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 107 LHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALG---CPRLEKL 162
+ +L++ C + +D + L + + L++C +T+A ++ P L +L
Sbjct: 4 IQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 60
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 32.0 bits (71), Expect = 0.026
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 13 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVL 72
L +L LS C + +L+ L + L TL+V + D +
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--------------VPDGTLQ 242
Query: 73 SLAENCPNLYYLCLSGCSQLTDASLIVLAQRC 104
L E P+L CS T + + +
Sbjct: 243 LLKEALPHLQIN----CSHFTTIARPTIGNKK 270
Score = 31.2 bits (69), Expect = 0.040
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 77 NCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKM 136
CPNL +L LS L + Q + L L ++ C L L +
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG-EIPTLKTL 230
Query: 137 DLEECVLITDATLIHLALGCPRLE 160
+ V D TL L P L+
Sbjct: 231 QVFGIV--PDGTLQLLKEALPHLQ 252
Score = 30.5 bits (67), Expect = 0.067
Identities = 36/172 (20%), Positives = 55/172 (31%), Gaps = 18/172 (10%)
Query: 6 TVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARG 65
T+ + C L L L G +L+D + LA+ L L ++ CS F++ Q L
Sbjct: 62 TLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 66 LL---------------DSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
+++A + L LSG + S + R
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179
Query: 111 EVASCSQFTDTGFQALARNCRLLAKMDLEECVLITDATLIHLALGCPRLEKL 162
S S L + L C I TL+ L P L+ L
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTL 230
Score = 28.1 bits (61), Expect = 0.49
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 15/121 (12%)
Query: 25 CSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARGLLDSAVLSLAENCPNLYYL 84
C + + ++ +++++ + S + + C L L
Sbjct: 30 CPRSFMDQPLAEHFSPFRVQHMDLSNSV-------------IEVSTLHGILSQCSKLQNL 76
Query: 85 CLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQALARNCRLLAKMDLEECVLI 144
L G +L+D + LA+ L L ++ CS F++ Q L +C L +++L C
Sbjct: 77 SLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134
Query: 145 T 145
T
Sbjct: 135 T 135
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 167
Score = 26.5 bits (57), Expect = 1.5
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 67 LDSAVLSLAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTLEVASCSQFTDTGFQAL 126
++S + L E+ +L + ++ +++ + L + +E S + + +A
Sbjct: 3 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR 62
Query: 127 ARNCRLLAKMDLEECVL----ITDATLIHLALGCPRLEKL 162
+ L + +T L L + +
Sbjct: 63 GLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSI 102
>d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus
[TaxId: 10891]}
Length = 365
Score = 25.4 bits (55), Expect = 3.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 39 RCHQLHTLEVASCSQFTDTGFQALARGLLD 68
RC+Q + QF D RG+L
Sbjct: 72 RCNQQIRHQDYVDVQFADRVTAHWKRGMLS 101
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 24.8 bits (53), Expect = 4.6
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 10 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 46
+ EN P L L LS + + Q+ L L
Sbjct: 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96
Score = 24.8 bits (53), Expect = 4.6
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 74 LAENCPNLYYLCLSGCSQLTDASLIVLAQRCHQLHTL 110
+ EN P L L LS + + Q+ L L
Sbjct: 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.137 0.418
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,192
Number of extensions: 22609
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 33
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.4 bits)