BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy959
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 12 HRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
HR +LL Q++ R T+Y+TDWG +I ++M GS +++I + L P
Sbjct: 192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWP 248
Query: 71 SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
+GL ID+ +YW DA IER++L G++R+A+
Sbjct: 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 45 TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREA 104
T +ILR + GS + ++ L P GLA+D+ + LYWTD+ +IE ++L G +R+
Sbjct: 136 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195
Query: 105 L 105
L
Sbjct: 196 L 196
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
LY+TD G +I + G+ +KV++ + L +P +A+ + +YWTD +IE
Sbjct: 173 LYWTDSG----TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228
Query: 94 RSDLAGNNREAL 105
S + G+ R +
Sbjct: 229 ASSMDGSGRRII 240
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 71 SGLAIDFDD--EMLYWTDAVREKIERSDLAGNNRE 103
+ +A+DF E+++W+D ++I R++L G+N E
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 62.0 bits (149), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 12 HRSLLL-QAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQP 70
HR +LL Q++ R T+Y+TDWG +I ++M GS +++I + L P
Sbjct: 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG---NTPRIEASSMDGSGRRIIADTHLFWP 205
Query: 71 SGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
+GL ID+ +YW DA IER++L G++R+A+
Sbjct: 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 45 TAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREA 104
T +ILR + GS + ++ L P GLA+D+ + LYWTD+ +IE ++L G +R+
Sbjct: 93 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152
Query: 105 L 105
L
Sbjct: 153 L 153
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
LY+TD G +I + G+ +KV++ + L +P +A+ + +YWTD +IE
Sbjct: 130 LYWTDSG----TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185
Query: 94 RSDLAGNNREAL 105
S + G+ R +
Sbjct: 186 ASSMDGSGRRII 197
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 71 SGLAIDFDD--EMLYWTDAVREKIERSDLAGNNRE 103
+ +A+DF E+++W+D ++I R++L G+N E
Sbjct: 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG KI R M GS + +II ++ P+GL +D++++ LYW DA I +
Sbjct: 136 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192
Query: 95 SDLAGNNREAL 105
S+L G NR+A+
Sbjct: 193 SNLDGTNRQAV 203
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
LY+TD +I + + GSL+KV+ ++L QP +A+D +YWTD KIE
Sbjct: 93 LYWTD----SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 148
Query: 94 RSDLAGNNR 102
R+ + G++R
Sbjct: 149 RAGMDGSSR 157
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 57 SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALY 106
S++ V++ LS P GLA D+ E LYWTD+ +IE S+L G+ R+ L+
Sbjct: 69 SVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF 117
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG KI R M GS + +II ++ P+GL +D++++ LYW DA I +
Sbjct: 133 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 189
Query: 95 SDLAGNNREAL 105
S+L G NR+A+
Sbjct: 190 SNLDGTNRQAV 200
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
LY+TD +I + + GSL+KV+ ++L QP +A+D +YWTD KIE
Sbjct: 90 LYWTD----SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 145
Query: 94 RSDLAGNNR 102
R+ + G++R
Sbjct: 146 RAGMDGSSR 154
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 57 SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALY 106
S++ V++ LS P GLA D+ E LYWTD+ +IE S+L G+ R+ L+
Sbjct: 66 SVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF 114
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG KI R M GS + +II ++ P+GL +D++++ LYW DA I +
Sbjct: 133 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 189
Query: 95 SDLAGNNREAL 105
S+L G NR+A+
Sbjct: 190 SNLDGTNRQAV 200
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG KI R + GS + V++ L P+GLA+D+D+ +YW DA +KIE
Sbjct: 441 MYWTDWGEIP---KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEV 497
Query: 95 SDLAGNNREALYLNK 109
+ G R L +K
Sbjct: 498 MNTDGTGRRVLVEDK 512
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
R LY+TD G +I T + G+++K++I +DL +P + +D +YWTD K
Sbjct: 396 RNLYWTDTG----TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPK 451
Query: 92 IERSDLAGNNREAL 105
IER+ L G++R L
Sbjct: 452 IERAALDGSDRVVL 465
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
LY+TD +I + + GSL+KV+ ++L QP +A+D +YWTD KIE
Sbjct: 90 LYWTD----SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 145
Query: 94 RSDLAGNNR 102
R+ + G++R
Sbjct: 146 RAGMDGSSR 154
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 57 SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK 109
S++ V++ LS P GLA D+ E LYWTD+ +IE S+L G+ R+ L+ +
Sbjct: 66 SVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 117
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TD I R+ + GS + ++ ++ P G+A+D+ LYWTD ++IE
Sbjct: 355 IYWTD----DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEV 410
Query: 95 SDLAGNNREAL 105
+ L G R+ L
Sbjct: 411 TRLNGTMRKIL 421
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG KI R M GS + +II ++ P+GL +D++++ LYW DA I +
Sbjct: 141 MYWTDWGE---VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 197
Query: 95 SDLAGNNREAL 105
S+L G NR+A+
Sbjct: 198 SNLDGTNRQAV 208
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG KI R + GS + V++ L P+GLA+D+D+ +YW DA +KIE
Sbjct: 449 MYWTDWGEIP---KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEV 505
Query: 95 SDLAGNNREALYLNK 109
+ G R L +K
Sbjct: 506 MNTDGTGRRVLVEDK 520
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
R LY+TD G +I T + G+++K++I +DL +P + +D +YWTD K
Sbjct: 404 RNLYWTDTG----TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPK 459
Query: 92 IERSDLAGNNREAL 105
IER+ L G++R L
Sbjct: 460 IERAALDGSDRVVL 473
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
LY+TD +I + + GSL+KV+ ++L QP +A+D +YWTD KIE
Sbjct: 98 LYWTD----SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 153
Query: 94 RSDLAGNNR 102
R+ + G++R
Sbjct: 154 RAGMDGSSR 162
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 57 SLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK 109
S++ V++ LS P GLA D+ E LYWTD+ +IE S+L G+ R+ L+ +
Sbjct: 74 SVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 125
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TD I R+ + GS + ++ ++ P G+A+D+ LYWTD ++IE
Sbjct: 363 IYWTD----DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEV 418
Query: 95 SDLAGNNREAL 105
+ L G R+ L
Sbjct: 419 TRLNGTMRKIL 429
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+T+WG KI R M GS + ++ ++ + +GL ID+ LYWTD IE
Sbjct: 135 MYWTEWG---GKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIES 190
Query: 95 SDLAGNNREAL 105
S++ G NRE +
Sbjct: 191 SNMLGLNREVI 201
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TD + I R M GS + ++E L P G+A+D+ + LYW D +IE
Sbjct: 49 IYWTDI----SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEV 104
Query: 95 SDLAGNNREAL 105
S L G +R+ L
Sbjct: 105 SKLDGQHRQVL 115
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 48 KILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
KI R + G+ ++V+ LS+P LA+D L+W D+ +IE SDL+G NR L
Sbjct: 455 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 512
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
+ LY+ D G +I + + G ++V++ KDL P LA+D + +YWT+ + K
Sbjct: 90 KNLYWADTG----TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 145
Query: 92 IERSDLAGNNREALYLN 108
I+R+ + G+ R L N
Sbjct: 146 IDRAAMDGSERTTLVPN 162
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
R LY+TD I + M G L + +I DL P GL + D +YWTD R I
Sbjct: 176 RRLYWTDL----DTNLIESSNMLG-LNREVIADDLPHPFGLT-QYQD-YIYWTDWSRRSI 228
Query: 93 ERSD-LAGNNR 102
ER++ +G NR
Sbjct: 229 ERANKTSGQNR 239
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 31 RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE 90
RL L++ D +I + ++G+ + V+ + ++ QP GL + F++ LYW D ++
Sbjct: 485 RLGKLFWAD----SDLRRIESSDLSGANRIVLEDSNILQPVGLTV-FEN-WLYWIDKQQQ 538
Query: 91 KIERSDLAG 99
IE+ D+ G
Sbjct: 539 MIEKIDMTG 547
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+T+WG KI R M GS + ++ ++ + +GL ID+ LYWTD IE
Sbjct: 142 MYWTEWG---GKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIES 197
Query: 95 SDLAGNNREAL 105
S++ G NRE +
Sbjct: 198 SNMLGLNREVI 208
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TD + I R M GS + ++E L P G+A+D+ + LYW D +IE
Sbjct: 56 IYWTDI----SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEV 111
Query: 95 SDLAGNNREAL 105
S L G +R+ L
Sbjct: 112 SKLDGQHRQVL 122
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 48 KILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
KI R + G+ ++V+ LS+P LA+D L+W D+ +IE SDL+G NR L
Sbjct: 462 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 519
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
+ LY+ D G +I + + G ++V++ KDL P LA+D + +YWT+ + K
Sbjct: 97 KNLYWADTG----TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 152
Query: 92 IERSDLAGNNREALYLN 108
I+R+ + G+ R L N
Sbjct: 153 IDRAAMDGSERTTLVPN 169
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
R LY+TD I + M G L + +I DL P GL + D +YWTD R I
Sbjct: 183 RRLYWTDL----DTNLIESSNMLG-LNREVIADDLPHPFGLT-QYQD-YIYWTDWSRRSI 235
Query: 93 ERSD-LAGNNR 102
ER++ +G NR
Sbjct: 236 ERANKTSGQNR 246
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 31 RLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE 90
RL L++ D +I + ++G+ + V+ + ++ QP GL + F++ LYW D ++
Sbjct: 492 RLGKLFWAD----SDLRRIESSDLSGANRIVLEDSNILQPVGLTV-FEN-WLYWIDKQQQ 545
Query: 91 KIERSDLAG 99
IE+ D+ G
Sbjct: 546 MIEKIDMTG 554
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+T+WG KI R M GS + ++ ++ + +GL ID+ LYWTD IE
Sbjct: 137 MYWTEWG---GKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIES 192
Query: 95 SDLAGNNREAL 105
S++ G NRE +
Sbjct: 193 SNMLGLNREVI 203
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TD + I R M GS + ++E L P G+A+D+ + LYW D +IE
Sbjct: 51 IYWTDI----SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEV 106
Query: 95 SDLAGNNREAL 105
S L G +R+ L
Sbjct: 107 SKLDGQHRQVL 117
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 48 KILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREAL 105
KI R + G+ ++V+ LS+P LA+D L+W D+ +IE SDL+G NR L
Sbjct: 457 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 514
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREK 91
+ LY+ D G +I + + G ++V++ KDL P LA+D + +YWT+ + K
Sbjct: 92 KNLYWADTG----TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK 147
Query: 92 IERSDLAGNNREALYLN 108
I+R+ + G+ R L N
Sbjct: 148 IDRAAMDGSERTTLVPN 164
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
R LY+TD I + M G L + +I DL P GL + D +YWTD R I
Sbjct: 178 RRLYWTDL----DTNLIESSNMLG-LNREVIADDLPHPFGLT-QYQD-YIYWTDWSRRSI 230
Query: 93 ERSD-LAGNNR 102
ER++ +G NR
Sbjct: 231 ERANKTSGQNR 241
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 48 KILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAG 99
+I + ++G+ + V+ + ++ QP GL + F++ LYW D ++ IE+ D+ G
Sbjct: 500 RIESSDLSGANRIVLEDSNILQPVGLTV-FEN-WLYWIDKQQQMIEKIDMTG 549
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG T KI + + G ++ +++ P+G+ +D LYW D+ I
Sbjct: 256 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
Query: 95 SDLAGNNREAL 105
D+ G NR+ +
Sbjct: 313 IDVNGGNRKTI 323
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y++D + L S +I +D+ P GLA+D+ +YWTD+V +
Sbjct: 166 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 225
Query: 95 SDLAGNNREALY 106
+D G R+ L+
Sbjct: 226 ADTKGVKRKTLF 237
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
+Y+TD G + G +K + ++ S+P + +D +YWTD KI+
Sbjct: 213 IYWTD----SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 268
Query: 94 RSDLAG 99
+ L G
Sbjct: 269 KGGLNG 274
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 56 GSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREKI 92
G +K I+E K L+ P LA+ F+D+ ++WTD + E I
Sbjct: 317 GGNRKTILEDEKRLAHPFSLAV-FEDK-VFWTDIINEAI 353
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG T KI + + G ++ +++ P+G+ +D LYW D+ I
Sbjct: 216 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272
Query: 95 SDLAGNNREAL 105
D+ G NR+ +
Sbjct: 273 IDVNGGNRKTI 283
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y++D + L S +I +D+ P GLA+D+ +YWTD+V +
Sbjct: 126 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 185
Query: 95 SDLAGNNREALY 106
+D G R+ L+
Sbjct: 186 ADTKGVKRKTLF 197
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
+Y+TD G + G +K + ++ S+P + +D +YWTD KI+
Sbjct: 173 IYWTD----SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 228
Query: 94 RSDLAG 99
+ L G
Sbjct: 229 KGGLNG 234
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 56 GSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREKI 92
G +K I+E K L+ P LA+ F+D+ ++WTD + E I
Sbjct: 277 GGNRKTILEDEKRLAHPFSLAV-FEDK-VFWTDIINEAI 313
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG T KI + + G ++ +++ P+G+ +D LYW D+ I
Sbjct: 528 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584
Query: 95 SDLAGNNREAL 105
D+ G NR+ +
Sbjct: 585 IDVNGGNRKTI 595
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y++D + L S +I +D+ P GLA+D+ +YWTD+V +
Sbjct: 438 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 497
Query: 95 SDLAGNNREALY 106
+D G R+ L+
Sbjct: 498 ADTKGVKRKTLF 509
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
+Y+TD G + G +K + ++ S+P + +D +YWTD KI+
Sbjct: 485 IYWTD----SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 540
Query: 94 RSDLAG 99
+ L G
Sbjct: 541 KGGLNG 546
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 56 GSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREKI 92
G +K I+E K L+ P LA+ F+D+ ++WTD + E I
Sbjct: 589 GGNRKTILEDEKRLAHPFSLAV-FEDK-VFWTDIINEAI 625
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG T KI + + G ++ +++ P+G+ +D LYW D+ I
Sbjct: 510 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566
Query: 95 SDLAGNNREAL 105
D+ G NR+ +
Sbjct: 567 IDVNGGNRKTI 577
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y++D + L S +I +D+ P GLA+D+ +YWTD+V +
Sbjct: 420 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 479
Query: 95 SDLAGNNREALY 106
+D G R+ L+
Sbjct: 480 ADTKGVKRKTLF 491
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
+Y+TD G + G +K + + S+P + +D +YWTD KI+
Sbjct: 467 IYWTD----SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK 522
Query: 94 RSDLAG 99
+ L G
Sbjct: 523 KGGLNG 528
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 56 GSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREKI 92
G +K I+E K L+ P LA+ F+D+ ++WTD + E I
Sbjct: 571 GGNRKTILEDEKRLAHPFSLAV-FEDK-VFWTDIINEAI 607
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKI 92
+ +Y+TD + I R ++ G II +DL P G+A+D ++WTD+ ++I
Sbjct: 48 KVVYWTDI----SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRI 103
Query: 93 ERSDLAGNNREALY 106
E + + G R L+
Sbjct: 104 EVAKMDGTQRRVLF 117
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 33 RTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVRE-- 90
RT+++TD +I M G+ ++V+ + L P G+ D LYWTD R+
Sbjct: 91 RTIFWTD----SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP 146
Query: 91 KIERSDLAGNNREAL 105
KIE S + G NR L
Sbjct: 147 KIETSHMDGTNRRIL 161
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 29 PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAV 88
P+R LY+TDW R KI + M G+ ++++ + +L P+GL D L W DA
Sbjct: 131 PVR-GNLYWTDWNRDNP--KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187
Query: 89 REKIE 93
+ E
Sbjct: 188 THRAE 192
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 43 FGTAGKILRTTMA-GSLKKVIIEKDLSQPS----GLAIDFDDEMLYWTDAVREKIERSDL 97
F GKI R + ++KK + L P+ GLA D D+++YWTD I R+ L
Sbjct: 6 FAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASL 65
Query: 98 AG 99
G
Sbjct: 66 HG 67
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTDAVREKIER 94
+Y+TDWG T KI + + G ++ +++ P+G+ +D LYW D+ I
Sbjct: 134 MYWTDWG---TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190
Query: 95 SDLAGNNREAL 105
D+ G NR+ +
Sbjct: 191 IDVNGGNRKTI 201
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 13 RSLLLQAIPGRRHFMP---PIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQ 69
RS IP R+ + + +Y++D + L S +I +D+
Sbjct: 19 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78
Query: 70 PSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALY 106
P GLA+D+ +YWTD+V + +D G R+ L+
Sbjct: 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF 115
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 35 LYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAIDFDDEMLYWTD-AVREKIE 93
+Y+TD G + G +K + ++ S+P + +D +YWTD KI+
Sbjct: 91 IYWTD----SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146
Query: 94 RSDLAG 99
+ L G
Sbjct: 147 KGGLNG 152
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 56 GSLKKVIIE--KDLSQPSGLAIDFDDEMLYWTDAVREKI 92
G +K I+E K L+ P LA+ F+D+ ++WTD + E I
Sbjct: 195 GGNRKTILEDEKRLAHPFSLAV-FEDK-VFWTDIINEAI 231
>pdb|2BSE|D Chain D, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
Protein In Complex With A Llama Vhh Domain
pdb|2BSE|E Chain E, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
Protein In Complex With A Llama Vhh Domain
pdb|2BSE|F Chain F, Structure Of Lactococcal Bacteriophage P2 Receptor Binding
Protein In Complex With A Llama Vhh Domain
pdb|2WZP|D Chain D, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|E Chain E, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|F Chain F, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|J Chain J, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|K Chain K, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
pdb|2WZP|L Chain L, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 123
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 73 LAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK 109
+A++FD +M Y+ D+V+ + S +G N L +N
Sbjct: 49 VALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNS 85
>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation.
pdb|4APS|B Chain B, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation
Length = 491
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 18/62 (29%)
Query: 14 SLLLQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGL 73
S LL AIPG +GT+GK+ + GS VI+ + L P GL
Sbjct: 367 SFLLMAIPG------------------ALYGTSGKVSPLWLVGSWALVILGEMLISPVGL 408
Query: 74 AI 75
++
Sbjct: 409 SV 410
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 64 EKDLSQPSGLAIDFDDEMLYWTDAVREKIERSDLAGNNREALYLNK 109
+K LS PSG+A +E + A R+K+ER +R AL N+
Sbjct: 197 QKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNR 242
>pdb|3L9D|A Chain A, The Crystal Structure Of Smu.1046c From Streptococcus
Mutans Ua159
pdb|3L9D|B Chain B, The Crystal Structure Of Smu.1046c From Streptococcus
Mutans Ua159
Length = 255
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 17 LQAIPGRRHFMPPIRLRTLYYTDWGRFGTAGKILRTTMAGSLKKVIIEKDLSQPSGLAID 76
+ I G+R M I++RTL W T L G + I++ L S +A
Sbjct: 159 VDTISGQRIIMAEIQIRTLAMNFW---ATIEHSLNYKYHGEFPED-IKRRLELTSKIAFQ 214
Query: 77 FDDEMLYWTDAVRE 90
D+EM D ++E
Sbjct: 215 LDEEMRQIRDDIKE 228
>pdb|3RF0|A Chain A, Crystal Structure Of Exopolyphosphatase From Yersinia
Pestis
pdb|3RF0|B Chain B, Crystal Structure Of Exopolyphosphatase From Yersinia
Pestis
Length = 209
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 67 LSQPSGLAIDFDDEMLYWTDAV 88
L+Q S + +DF+ E YW D V
Sbjct: 167 LTQNSLVQLDFEREQAYWDDVV 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,125,194
Number of Sequences: 62578
Number of extensions: 113318
Number of successful extensions: 251
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 90
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)